Multiple sequence alignment - TraesCS2D01G349600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G349600 chr2D 100.000 4580 0 0 1 4580 446947346 446942767 0.000000e+00 8458.0
1 TraesCS2D01G349600 chr2D 88.098 773 68 7 8 769 427151441 427150682 0.000000e+00 896.0
2 TraesCS2D01G349600 chr2D 77.641 407 66 16 4180 4578 447322505 447322116 1.660000e-54 224.0
3 TraesCS2D01G349600 chr2B 95.395 1759 65 8 833 2586 526780744 526778997 0.000000e+00 2785.0
4 TraesCS2D01G349600 chr2B 89.270 1370 82 31 3251 4579 526778319 526776974 0.000000e+00 1655.0
5 TraesCS2D01G349600 chr2B 93.570 591 36 1 2646 3234 526779007 526778417 0.000000e+00 880.0
6 TraesCS2D01G349600 chr2B 77.033 418 71 16 4182 4576 632404404 632403989 2.770000e-52 217.0
7 TraesCS2D01G349600 chr2B 76.413 407 71 15 4180 4578 526971108 526970719 3.610000e-46 196.0
8 TraesCS2D01G349600 chr2A 90.350 1886 88 36 789 2590 591282729 591280854 0.000000e+00 2388.0
9 TraesCS2D01G349600 chr2A 95.701 442 19 0 4139 4580 591279179 591278738 0.000000e+00 712.0
10 TraesCS2D01G349600 chr2A 92.197 487 29 5 2770 3248 591280562 591280077 0.000000e+00 680.0
11 TraesCS2D01G349600 chr2A 81.481 702 67 26 3251 3912 591279988 591279310 6.790000e-143 518.0
12 TraesCS2D01G349600 chr2A 77.317 410 62 21 4180 4578 592092504 592092115 3.590000e-51 213.0
13 TraesCS2D01G349600 chr2A 73.389 357 79 11 10 356 750753983 750753633 8.050000e-23 119.0
14 TraesCS2D01G349600 chr6B 91.260 778 58 6 1 769 500649058 500649834 0.000000e+00 1051.0
15 TraesCS2D01G349600 chr6B 90.661 771 60 4 4 766 664850566 664849800 0.000000e+00 1014.0
16 TraesCS2D01G349600 chr5D 89.269 438 47 0 4139 4576 463088619 463088182 2.410000e-152 549.0
17 TraesCS2D01G349600 chr5A 89.041 438 48 0 4139 4576 582982113 582981676 1.120000e-150 544.0
18 TraesCS2D01G349600 chr5B 88.356 438 51 0 4139 4576 569826708 569826271 1.130000e-145 527.0
19 TraesCS2D01G349600 chr3A 100.000 32 0 0 731 762 99896787 99896756 4.950000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G349600 chr2D 446942767 446947346 4579 True 8458.000000 8458 100.00000 1 4580 1 chr2D.!!$R2 4579
1 TraesCS2D01G349600 chr2D 427150682 427151441 759 True 896.000000 896 88.09800 8 769 1 chr2D.!!$R1 761
2 TraesCS2D01G349600 chr2B 526776974 526780744 3770 True 1773.333333 2785 92.74500 833 4579 3 chr2B.!!$R3 3746
3 TraesCS2D01G349600 chr2A 591278738 591282729 3991 True 1074.500000 2388 89.93225 789 4580 4 chr2A.!!$R3 3791
4 TraesCS2D01G349600 chr6B 500649058 500649834 776 False 1051.000000 1051 91.26000 1 769 1 chr6B.!!$F1 768
5 TraesCS2D01G349600 chr6B 664849800 664850566 766 True 1014.000000 1014 90.66100 4 766 1 chr6B.!!$R1 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
791 821 0.039256 CATGGGGTCAAAACTGTGCG 60.039 55.0 0.00 0.0 0.00 5.34 F
812 842 0.107268 TGTCTGCTTGCTGCTTGAGA 59.893 50.0 0.00 0.0 43.37 3.27 F
1468 1586 0.958382 TTGCCTCGGTAATTGCGCTT 60.958 50.0 9.73 0.0 0.00 4.68 F
2938 3258 0.250513 TTTGTTGTTTGGTGGGTGGC 59.749 50.0 0.00 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 1928 1.996798 ACTTCTCCCTGTCTTCGTCA 58.003 50.00 0.00 0.0 0.00 4.35 R
2644 2782 3.764434 TGCCAGTTAACCTCAAAACAACA 59.236 39.13 0.88 0.0 0.00 3.33 R
3384 3798 0.107312 CAGGAGATCAAGCACCTGGG 60.107 60.00 4.09 0.0 44.04 4.45 R
3915 4373 2.030457 CGTAATCGGCTGGAAACATCAC 59.970 50.00 0.00 0.0 41.51 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 8.711457 GGTATTTTGTTTAACTTGTAGCTCGTA 58.289 33.333 0.00 0.00 0.00 3.43
147 148 4.656112 TCCATAATTCTTCTCCAGTCTCCC 59.344 45.833 0.00 0.00 0.00 4.30
240 241 4.972286 CGCATTACGCATCTGATTAAGA 57.028 40.909 0.00 0.00 42.60 2.10
304 314 3.270027 CAACCAGCGAACATCCTTGATA 58.730 45.455 0.00 0.00 0.00 2.15
350 360 5.832539 AAACAAGATCCTCTTCCTCTTCA 57.167 39.130 0.00 0.00 33.78 3.02
370 380 4.728772 TCACCATGAAGTTTCAATCCTGT 58.271 39.130 0.00 0.00 41.13 4.00
452 462 1.276622 TCTGTTCCTGAACCCTAGCC 58.723 55.000 7.51 0.00 40.46 3.93
524 534 1.997311 CTGGACATCCTGCCTCCCA 60.997 63.158 0.00 0.00 36.82 4.37
526 536 0.920763 TGGACATCCTGCCTCCCAAT 60.921 55.000 0.00 0.00 36.82 3.16
529 539 2.108952 GGACATCCTGCCTCCCAATATT 59.891 50.000 0.00 0.00 0.00 1.28
563 591 2.664851 TCAACTGCGTTGGCCTCG 60.665 61.111 17.28 10.54 42.99 4.63
605 633 1.230281 TCCTCCCTTCCCCTGCATT 60.230 57.895 0.00 0.00 0.00 3.56
626 654 3.767630 AACTGAAACCACGCCCGCT 62.768 57.895 0.00 0.00 0.00 5.52
695 723 3.219928 GAGATCTCAGCCGCCGGA 61.220 66.667 18.11 0.00 0.00 5.14
698 726 3.492311 GATCTCAGCCGCCGGAGAC 62.492 68.421 7.68 0.00 43.43 3.36
769 799 6.442885 CCTAGAGAAACCCTAGGGAAAAACTA 59.557 42.308 35.38 25.04 45.98 2.24
770 800 6.775234 AGAGAAACCCTAGGGAAAAACTAA 57.225 37.500 35.38 0.00 38.96 2.24
771 801 7.157947 AGAGAAACCCTAGGGAAAAACTAAA 57.842 36.000 35.38 0.00 38.96 1.85
772 802 7.002879 AGAGAAACCCTAGGGAAAAACTAAAC 58.997 38.462 35.38 13.34 38.96 2.01
773 803 6.675565 AGAAACCCTAGGGAAAAACTAAACA 58.324 36.000 35.38 0.00 38.96 2.83
774 804 7.302948 AGAAACCCTAGGGAAAAACTAAACAT 58.697 34.615 35.38 3.54 38.96 2.71
775 805 6.911250 AACCCTAGGGAAAAACTAAACATG 57.089 37.500 35.38 1.62 38.96 3.21
776 806 5.330233 ACCCTAGGGAAAAACTAAACATGG 58.670 41.667 35.38 1.21 38.96 3.66
777 807 4.709886 CCCTAGGGAAAAACTAAACATGGG 59.290 45.833 24.99 0.00 37.50 4.00
778 808 4.709886 CCTAGGGAAAAACTAAACATGGGG 59.290 45.833 0.00 0.00 0.00 4.96
779 809 4.207698 AGGGAAAAACTAAACATGGGGT 57.792 40.909 0.00 0.00 0.00 4.95
780 810 4.157246 AGGGAAAAACTAAACATGGGGTC 58.843 43.478 0.00 0.00 0.00 4.46
781 811 3.898741 GGGAAAAACTAAACATGGGGTCA 59.101 43.478 0.00 0.00 0.00 4.02
782 812 4.345547 GGGAAAAACTAAACATGGGGTCAA 59.654 41.667 0.00 0.00 0.00 3.18
783 813 5.163290 GGGAAAAACTAAACATGGGGTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
784 814 6.350103 GGAAAAACTAAACATGGGGTCAAAA 58.650 36.000 0.00 0.00 0.00 2.44
785 815 6.259167 GGAAAAACTAAACATGGGGTCAAAAC 59.741 38.462 0.00 0.00 0.00 2.43
786 816 6.553953 AAAACTAAACATGGGGTCAAAACT 57.446 33.333 0.00 0.00 0.00 2.66
787 817 5.529581 AACTAAACATGGGGTCAAAACTG 57.470 39.130 0.00 0.00 0.00 3.16
788 818 4.542697 ACTAAACATGGGGTCAAAACTGT 58.457 39.130 0.00 0.00 0.00 3.55
789 819 3.817709 AAACATGGGGTCAAAACTGTG 57.182 42.857 0.00 0.00 0.00 3.66
790 820 1.039856 ACATGGGGTCAAAACTGTGC 58.960 50.000 0.00 0.00 0.00 4.57
791 821 0.039256 CATGGGGTCAAAACTGTGCG 60.039 55.000 0.00 0.00 0.00 5.34
792 822 0.467290 ATGGGGTCAAAACTGTGCGT 60.467 50.000 0.00 0.00 0.00 5.24
793 823 0.681564 TGGGGTCAAAACTGTGCGTT 60.682 50.000 0.00 0.00 37.47 4.84
794 824 0.248866 GGGGTCAAAACTGTGCGTTG 60.249 55.000 0.00 0.00 35.61 4.10
811 841 0.949397 TTGTCTGCTTGCTGCTTGAG 59.051 50.000 0.00 0.00 43.37 3.02
812 842 0.107268 TGTCTGCTTGCTGCTTGAGA 59.893 50.000 0.00 0.00 43.37 3.27
816 846 1.130749 CTGCTTGCTGCTTGAGATCAC 59.869 52.381 0.00 0.00 43.37 3.06
825 855 2.104622 TGCTTGAGATCACACCACTTCA 59.895 45.455 0.00 0.00 0.00 3.02
926 956 2.718731 CACGGCGAAAAAGTGGCA 59.281 55.556 16.62 0.00 31.34 4.92
1456 1574 1.592110 CGCGTGTGATATTTTGCCTCG 60.592 52.381 0.00 0.00 0.00 4.63
1468 1586 0.958382 TTGCCTCGGTAATTGCGCTT 60.958 50.000 9.73 0.00 0.00 4.68
1733 1867 9.487790 TGGTTCTGAATTGGTTTCAATATTTTC 57.512 29.630 0.00 0.00 43.64 2.29
1762 1896 1.377690 TGGAGAAAATGGGTGGCCTA 58.622 50.000 3.32 0.00 0.00 3.93
1794 1928 1.131638 TGGAGACAGCACCTTCAAGT 58.868 50.000 0.00 0.00 35.01 3.16
1878 2012 7.502120 TCTAAATCAAATGCATTAGCTCCTC 57.498 36.000 13.39 0.00 42.74 3.71
2134 2268 5.664457 AGTTAAGGGTGCGGTAATACTTAC 58.336 41.667 0.00 0.00 35.39 2.34
2137 2271 2.433239 AGGGTGCGGTAATACTTACTGG 59.567 50.000 7.71 0.00 41.71 4.00
2148 2282 9.627395 CGGTAATACTTACTGGAAGATCTATTG 57.373 37.037 6.64 0.00 38.55 1.90
2169 2303 3.035942 GTGCTTTGTGCTAGTGTTTTCG 58.964 45.455 0.00 0.00 43.37 3.46
2174 2308 4.466567 TTGTGCTAGTGTTTTCGTCATG 57.533 40.909 0.00 0.00 0.00 3.07
2176 2310 2.223144 GTGCTAGTGTTTTCGTCATGCA 59.777 45.455 0.00 0.00 0.00 3.96
2234 2368 9.101655 ACTTAATCGTTTTTGTAGTGTACACTT 57.898 29.630 32.15 16.83 42.54 3.16
2414 2549 5.008613 TGGACTTGTAAGTTGCATTTGACTC 59.991 40.000 0.00 0.00 39.88 3.36
2551 2687 5.412286 GCCGGTATAGTTCTGGTTGTTTTTA 59.588 40.000 1.90 0.00 34.14 1.52
2577 2715 7.233348 ACTTCTTTGATCATGTTTACCATGGTT 59.767 33.333 25.38 7.42 45.08 3.67
2578 2716 6.923012 TCTTTGATCATGTTTACCATGGTTG 58.077 36.000 25.38 15.10 45.08 3.77
2579 2717 6.493115 TCTTTGATCATGTTTACCATGGTTGT 59.507 34.615 25.38 5.57 45.08 3.32
2580 2718 6.662865 TTGATCATGTTTACCATGGTTGTT 57.337 33.333 25.38 9.76 45.08 2.83
2581 2719 6.662865 TGATCATGTTTACCATGGTTGTTT 57.337 33.333 25.38 7.03 45.08 2.83
2582 2720 7.060383 TGATCATGTTTACCATGGTTGTTTT 57.940 32.000 25.38 2.92 45.08 2.43
2583 2721 7.504403 TGATCATGTTTACCATGGTTGTTTTT 58.496 30.769 25.38 0.00 45.08 1.94
2584 2722 8.642432 TGATCATGTTTACCATGGTTGTTTTTA 58.358 29.630 25.38 0.00 45.08 1.52
2585 2723 9.139174 GATCATGTTTACCATGGTTGTTTTTAG 57.861 33.333 25.38 7.10 45.08 1.85
2586 2724 7.650834 CATGTTTACCATGGTTGTTTTTAGG 57.349 36.000 25.38 1.72 46.03 2.69
2587 2725 6.163135 TGTTTACCATGGTTGTTTTTAGGG 57.837 37.500 25.38 0.00 0.00 3.53
2588 2726 5.661759 TGTTTACCATGGTTGTTTTTAGGGT 59.338 36.000 25.38 0.00 0.00 4.34
2589 2727 6.156429 TGTTTACCATGGTTGTTTTTAGGGTT 59.844 34.615 25.38 0.00 0.00 4.11
2590 2728 6.809976 TTACCATGGTTGTTTTTAGGGTTT 57.190 33.333 25.38 0.00 0.00 3.27
2591 2729 5.702065 ACCATGGTTGTTTTTAGGGTTTT 57.298 34.783 13.00 0.00 0.00 2.43
2592 2730 6.068461 ACCATGGTTGTTTTTAGGGTTTTT 57.932 33.333 13.00 0.00 0.00 1.94
2593 2731 7.196637 ACCATGGTTGTTTTTAGGGTTTTTA 57.803 32.000 13.00 0.00 0.00 1.52
2594 2732 7.631007 ACCATGGTTGTTTTTAGGGTTTTTAA 58.369 30.769 13.00 0.00 0.00 1.52
2595 2733 8.107729 ACCATGGTTGTTTTTAGGGTTTTTAAA 58.892 29.630 13.00 0.00 0.00 1.52
2596 2734 8.957466 CCATGGTTGTTTTTAGGGTTTTTAAAA 58.043 29.630 2.57 0.00 0.00 1.52
2646 2784 8.570068 ACCGTATATATTTCAAAACAGGTTGT 57.430 30.769 0.00 0.00 0.00 3.32
2668 2806 5.172205 GTTGTTTTGAGGTTAACTGGCAAA 58.828 37.500 5.42 10.42 0.00 3.68
2725 2863 7.422399 TGTCTTTACAAAGTTTTCATACCAGC 58.578 34.615 1.86 0.00 37.31 4.85
2741 2879 3.844640 ACCAGCCATCCTAGTTGTTTTT 58.155 40.909 0.00 0.00 0.00 1.94
2910 3230 3.633525 GCCAGATCCTATTTGAATGCACA 59.366 43.478 0.00 0.00 0.00 4.57
2932 3252 6.851837 CACATGCAATTATTTGTTGTTTGGTG 59.148 34.615 0.00 0.00 35.17 4.17
2938 3258 0.250513 TTTGTTGTTTGGTGGGTGGC 59.749 50.000 0.00 0.00 0.00 5.01
2970 3290 8.435187 TCTGAAAGCTATGATAAGTGATTCCAT 58.565 33.333 0.00 0.00 0.00 3.41
2998 3318 9.075519 GCATTCAAAATTCTTGATCGTTTCATA 57.924 29.630 4.59 0.00 33.34 2.15
3074 3394 2.031682 CAGCAAAGGTAGTGAGCACAAC 60.032 50.000 3.19 0.00 0.00 3.32
3090 3410 3.079578 CACAACTGGAGCAGATCATGTT 58.920 45.455 0.00 0.00 35.18 2.71
3091 3411 3.079578 ACAACTGGAGCAGATCATGTTG 58.920 45.455 16.50 16.50 42.89 3.33
3112 3437 9.750125 ATGTTGAACTTTACTTGAGATTTTTCC 57.250 29.630 0.00 0.00 0.00 3.13
3121 3448 9.541143 TTTACTTGAGATTTTTCCAAATTGGTC 57.459 29.630 12.28 1.64 39.03 4.02
3123 3450 5.132897 TGAGATTTTTCCAAATTGGTCGG 57.867 39.130 12.28 0.00 39.03 4.79
3129 3456 4.587584 TTTCCAAATTGGTCGGGTTAAC 57.412 40.909 12.28 0.00 39.03 2.01
3153 3480 5.504755 CGACTTAATTGTTCGATGCAGAAAC 59.495 40.000 0.00 0.00 0.00 2.78
3158 3485 3.678056 TGTTCGATGCAGAAACTAGGT 57.322 42.857 9.27 0.00 0.00 3.08
3223 3550 5.091552 TGGACTACAAGTAGGTCTTCCAAT 58.908 41.667 12.34 0.00 34.01 3.16
3267 3681 1.069906 ACGCTTTTGAACACGAGATGC 60.070 47.619 0.00 0.00 0.00 3.91
3279 3693 4.074970 ACACGAGATGCCTTTCTTTTGAT 58.925 39.130 0.00 0.00 0.00 2.57
3299 3713 1.604593 GGCAGCAAAAGGAGCAGGA 60.605 57.895 0.00 0.00 0.00 3.86
3349 3763 6.092807 CCTTCAACTGCTAACCAAGTAAGATC 59.907 42.308 0.00 0.00 0.00 2.75
3350 3764 6.109156 TCAACTGCTAACCAAGTAAGATCA 57.891 37.500 0.00 0.00 0.00 2.92
3365 3779 8.887717 CAAGTAAGATCAAGCTTAGCTACAAAT 58.112 33.333 7.32 0.00 38.25 2.32
3371 3785 6.422776 TCAAGCTTAGCTACAAATTAGTGC 57.577 37.500 7.32 0.00 38.25 4.40
3377 3791 6.092807 GCTTAGCTACAAATTAGTGCTCAGTT 59.907 38.462 0.00 0.00 35.47 3.16
3378 3792 7.596749 TTAGCTACAAATTAGTGCTCAGTTC 57.403 36.000 0.00 0.00 35.47 3.01
3383 3797 6.639632 ACAAATTAGTGCTCAGTTCAACAT 57.360 33.333 0.00 0.00 0.00 2.71
3384 3798 6.672147 ACAAATTAGTGCTCAGTTCAACATC 58.328 36.000 0.00 0.00 0.00 3.06
3388 3802 1.808945 GTGCTCAGTTCAACATCCCAG 59.191 52.381 0.00 0.00 0.00 4.45
3389 3803 1.271543 TGCTCAGTTCAACATCCCAGG 60.272 52.381 0.00 0.00 0.00 4.45
3393 3807 0.773644 AGTTCAACATCCCAGGTGCT 59.226 50.000 0.00 0.00 0.00 4.40
3448 3862 1.065551 GCAATTGCAACCTATCCCGAC 59.934 52.381 25.36 0.00 41.59 4.79
3451 3865 0.988832 TTGCAACCTATCCCGACCTT 59.011 50.000 0.00 0.00 0.00 3.50
3466 3880 4.037684 CCCGACCTTAGTAATGTGAGGTAG 59.962 50.000 0.00 0.00 42.35 3.18
3470 3884 6.017275 CGACCTTAGTAATGTGAGGTAGGTAG 60.017 46.154 0.00 0.00 42.35 3.18
3474 3888 7.506261 CCTTAGTAATGTGAGGTAGGTAGTGAT 59.494 40.741 0.00 0.00 0.00 3.06
3477 3891 8.147244 AGTAATGTGAGGTAGGTAGTGATTTT 57.853 34.615 0.00 0.00 0.00 1.82
3478 3892 8.041323 AGTAATGTGAGGTAGGTAGTGATTTTG 58.959 37.037 0.00 0.00 0.00 2.44
3482 3896 4.081087 TGAGGTAGGTAGTGATTTTGCCTC 60.081 45.833 0.00 0.00 40.08 4.70
3487 3901 6.882678 GGTAGGTAGTGATTTTGCCTCTTTTA 59.117 38.462 0.00 0.00 0.00 1.52
3488 3902 7.065923 GGTAGGTAGTGATTTTGCCTCTTTTAG 59.934 40.741 0.00 0.00 0.00 1.85
3489 3903 6.543735 AGGTAGTGATTTTGCCTCTTTTAGT 58.456 36.000 0.00 0.00 0.00 2.24
3490 3904 6.655425 AGGTAGTGATTTTGCCTCTTTTAGTC 59.345 38.462 0.00 0.00 0.00 2.59
3492 3906 6.809630 AGTGATTTTGCCTCTTTTAGTCTC 57.190 37.500 0.00 0.00 0.00 3.36
3513 3937 6.431234 GTCTCTTTTCATCAGGTAAACCACAT 59.569 38.462 1.26 0.00 38.89 3.21
3523 3947 9.173021 CATCAGGTAAACCACATCTGTTAATTA 57.827 33.333 1.26 0.00 38.89 1.40
3597 4021 4.339530 GGATAGTGGAATTTCCTGCTTTCC 59.660 45.833 21.38 21.38 37.46 3.13
3598 4022 3.243359 AGTGGAATTTCCTGCTTTCCA 57.757 42.857 16.25 0.00 45.00 3.53
3600 4024 1.885887 TGGAATTTCCTGCTTTCCACG 59.114 47.619 16.25 0.00 42.96 4.94
3602 4026 1.886542 GAATTTCCTGCTTTCCACGGT 59.113 47.619 0.00 0.00 0.00 4.83
3607 4031 0.537371 CCTGCTTTCCACGGTCCTTT 60.537 55.000 0.00 0.00 0.00 3.11
3613 4037 1.314730 TTCCACGGTCCTTTTTCTGC 58.685 50.000 0.00 0.00 0.00 4.26
3624 4048 0.597568 TTTTTCTGCTGGTGGCGATG 59.402 50.000 0.00 0.00 45.43 3.84
3633 4057 2.404789 GTGGCGATGCAATCCACG 59.595 61.111 16.23 7.63 41.39 4.94
3644 4068 2.534396 AATCCACGCAGGGGTTGGA 61.534 57.895 0.00 0.00 38.24 3.53
3661 4103 4.386312 GGTTGGATGATCCCCACTAATTCA 60.386 45.833 9.36 0.00 35.03 2.57
3668 4110 4.478317 TGATCCCCACTAATTCATTCACCT 59.522 41.667 0.00 0.00 0.00 4.00
3705 4147 3.806316 AAATCACTGCTCGGTTAAACG 57.194 42.857 6.56 6.56 0.00 3.60
3717 4159 1.543871 GGTTAAACGTCTTGCCCCTCA 60.544 52.381 0.00 0.00 0.00 3.86
3718 4160 1.534163 GTTAAACGTCTTGCCCCTCAC 59.466 52.381 0.00 0.00 0.00 3.51
3719 4161 0.035739 TAAACGTCTTGCCCCTCACC 59.964 55.000 0.00 0.00 0.00 4.02
3720 4162 2.692273 AAACGTCTTGCCCCTCACCC 62.692 60.000 0.00 0.00 0.00 4.61
3722 4164 2.843545 GTCTTGCCCCTCACCCAA 59.156 61.111 0.00 0.00 0.00 4.12
3723 4165 1.384191 GTCTTGCCCCTCACCCAAT 59.616 57.895 0.00 0.00 0.00 3.16
3724 4166 0.681243 GTCTTGCCCCTCACCCAATC 60.681 60.000 0.00 0.00 0.00 2.67
3726 4168 0.394899 CTTGCCCCTCACCCAATCTC 60.395 60.000 0.00 0.00 0.00 2.75
3727 4169 2.190578 GCCCCTCACCCAATCTCG 59.809 66.667 0.00 0.00 0.00 4.04
3728 4170 2.670148 GCCCCTCACCCAATCTCGT 61.670 63.158 0.00 0.00 0.00 4.18
3729 4171 1.522569 CCCCTCACCCAATCTCGTC 59.477 63.158 0.00 0.00 0.00 4.20
3730 4172 1.264749 CCCCTCACCCAATCTCGTCA 61.265 60.000 0.00 0.00 0.00 4.35
3731 4173 0.108138 CCCTCACCCAATCTCGTCAC 60.108 60.000 0.00 0.00 0.00 3.67
3743 4185 2.832563 TCTCGTCACTGAATTGTGCAA 58.167 42.857 0.00 0.00 37.81 4.08
3744 4186 3.402110 TCTCGTCACTGAATTGTGCAAT 58.598 40.909 0.00 0.00 37.81 3.56
3745 4187 3.814842 TCTCGTCACTGAATTGTGCAATT 59.185 39.130 9.60 9.60 43.14 2.32
3769 4211 2.346803 CTGTTACAGTGTAGCGGCAAT 58.653 47.619 12.36 0.00 0.00 3.56
3870 4327 6.417327 CATTTCATACGCAGAGAAAGTGATC 58.583 40.000 0.00 0.00 35.05 2.92
3915 4373 1.266718 ACGTAACATTGCAGCTGTTGG 59.733 47.619 20.78 15.92 37.41 3.77
3929 4387 1.270550 CTGTTGGTGATGTTTCCAGCC 59.729 52.381 0.00 0.00 34.75 4.85
4036 4517 4.154737 TCATTCTCAGCAGTCAATTTTCCG 59.845 41.667 0.00 0.00 0.00 4.30
4077 4558 3.862267 CCGAGAAACTCACATTCTAGCAG 59.138 47.826 0.00 0.00 37.26 4.24
4078 4559 3.305629 CGAGAAACTCACATTCTAGCAGC 59.694 47.826 0.00 0.00 37.26 5.25
4079 4560 4.248859 GAGAAACTCACATTCTAGCAGCA 58.751 43.478 0.00 0.00 37.26 4.41
4080 4561 3.999663 AGAAACTCACATTCTAGCAGCAC 59.000 43.478 0.00 0.00 35.43 4.40
4081 4562 3.407424 AACTCACATTCTAGCAGCACA 57.593 42.857 0.00 0.00 0.00 4.57
4082 4563 2.693069 ACTCACATTCTAGCAGCACAC 58.307 47.619 0.00 0.00 0.00 3.82
4083 4564 2.037641 ACTCACATTCTAGCAGCACACA 59.962 45.455 0.00 0.00 0.00 3.72
4084 4565 3.268330 CTCACATTCTAGCAGCACACAT 58.732 45.455 0.00 0.00 0.00 3.21
4085 4566 4.081476 ACTCACATTCTAGCAGCACACATA 60.081 41.667 0.00 0.00 0.00 2.29
4086 4567 4.831107 TCACATTCTAGCAGCACACATAA 58.169 39.130 0.00 0.00 0.00 1.90
4187 4670 1.853319 GTGCGAAACACTGACGAGG 59.147 57.895 0.00 0.00 46.41 4.63
4315 4798 4.415501 GAGCTTGTCGCGCACGTG 62.416 66.667 12.28 12.28 45.59 4.49
4354 4837 3.103911 GTACGACACGCGCTTGCT 61.104 61.111 14.54 1.04 46.04 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.281925 GAGGATCAAGGGCCTCCCAA 61.282 60.000 6.46 0.00 43.91 4.12
57 58 8.370940 CAGGAGTATGATGGTTACTATGATGTT 58.629 37.037 0.00 0.00 30.15 2.71
147 148 2.183478 TGGTACAATGTCACTGCCTG 57.817 50.000 0.00 0.00 31.92 4.85
245 246 1.001706 CACGACCTTTCAGTCACTCGA 60.002 52.381 0.00 0.00 36.52 4.04
304 314 2.821437 TCGGAAGAAGTGGAGGATCTT 58.179 47.619 0.00 0.00 37.03 2.40
350 360 7.433680 GTTTTACAGGATTGAAACTTCATGGT 58.566 34.615 0.00 0.00 37.00 3.55
370 380 3.002791 CCAGAGCTTGCTGATCGTTTTA 58.997 45.455 0.00 0.00 38.14 1.52
416 426 4.828072 ACAGAACCTGGAAGAGGAATAC 57.172 45.455 0.00 0.00 46.33 1.89
418 428 3.009584 GGAACAGAACCTGGAAGAGGAAT 59.990 47.826 0.00 0.00 46.33 3.01
452 462 3.541713 GCGGAGGAGGCAGGTAGG 61.542 72.222 0.00 0.00 0.00 3.18
524 534 1.956477 GCCGATGTGGAAGCCAATATT 59.044 47.619 0.00 0.00 42.00 1.28
526 536 0.465460 GGCCGATGTGGAAGCCAATA 60.465 55.000 0.00 0.00 45.07 1.90
533 543 0.321564 CAGTTGAGGCCGATGTGGAA 60.322 55.000 0.00 0.00 42.00 3.53
563 591 1.829096 GACGAGAGGTAGGGAGGGC 60.829 68.421 0.00 0.00 0.00 5.19
605 633 1.527380 GGGCGTGGTTTCAGTTGGA 60.527 57.895 0.00 0.00 0.00 3.53
626 654 2.782222 GCGGAGGGCGTCTGTCATA 61.782 63.158 16.63 0.00 33.49 2.15
762 792 6.821160 CAGTTTTGACCCCATGTTTAGTTTTT 59.179 34.615 0.00 0.00 0.00 1.94
769 799 2.158971 GCACAGTTTTGACCCCATGTTT 60.159 45.455 0.00 0.00 0.00 2.83
770 800 1.412343 GCACAGTTTTGACCCCATGTT 59.588 47.619 0.00 0.00 0.00 2.71
771 801 1.039856 GCACAGTTTTGACCCCATGT 58.960 50.000 0.00 0.00 0.00 3.21
772 802 0.039256 CGCACAGTTTTGACCCCATG 60.039 55.000 0.00 0.00 0.00 3.66
773 803 0.467290 ACGCACAGTTTTGACCCCAT 60.467 50.000 0.00 0.00 0.00 4.00
774 804 0.681564 AACGCACAGTTTTGACCCCA 60.682 50.000 0.00 0.00 40.88 4.96
775 805 0.248866 CAACGCACAGTTTTGACCCC 60.249 55.000 0.00 0.00 42.02 4.95
776 806 0.454196 ACAACGCACAGTTTTGACCC 59.546 50.000 0.00 0.00 42.02 4.46
777 807 1.400494 AGACAACGCACAGTTTTGACC 59.600 47.619 0.00 0.00 42.02 4.02
778 808 2.440501 CAGACAACGCACAGTTTTGAC 58.559 47.619 0.00 0.00 42.02 3.18
779 809 1.202132 GCAGACAACGCACAGTTTTGA 60.202 47.619 0.00 0.00 42.02 2.69
780 810 1.191096 GCAGACAACGCACAGTTTTG 58.809 50.000 0.00 0.00 42.02 2.44
781 811 1.094785 AGCAGACAACGCACAGTTTT 58.905 45.000 0.00 0.00 42.02 2.43
782 812 1.094785 AAGCAGACAACGCACAGTTT 58.905 45.000 0.00 0.00 42.02 2.66
783 813 0.378257 CAAGCAGACAACGCACAGTT 59.622 50.000 0.00 0.00 45.45 3.16
784 814 2.016961 CAAGCAGACAACGCACAGT 58.983 52.632 0.00 0.00 0.00 3.55
785 815 1.369689 GCAAGCAGACAACGCACAG 60.370 57.895 0.00 0.00 0.00 3.66
786 816 1.819208 AGCAAGCAGACAACGCACA 60.819 52.632 0.00 0.00 0.00 4.57
787 817 1.369689 CAGCAAGCAGACAACGCAC 60.370 57.895 0.00 0.00 0.00 5.34
788 818 3.024784 CAGCAAGCAGACAACGCA 58.975 55.556 0.00 0.00 0.00 5.24
789 819 2.428071 GCAGCAAGCAGACAACGC 60.428 61.111 0.00 0.00 44.79 4.84
811 841 2.427506 GGTCCTTGAAGTGGTGTGATC 58.572 52.381 0.00 0.00 0.00 2.92
812 842 1.270839 CGGTCCTTGAAGTGGTGTGAT 60.271 52.381 0.00 0.00 0.00 3.06
816 846 1.227823 TGCGGTCCTTGAAGTGGTG 60.228 57.895 0.00 0.00 0.00 4.17
825 855 0.830444 TGTAGACAGGTGCGGTCCTT 60.830 55.000 0.00 0.00 35.37 3.36
926 956 3.006323 CGAGAATGGCTGCTTATCTACCT 59.994 47.826 0.00 0.00 0.00 3.08
1308 1381 3.172575 CAGTACAGCGGCGTGTCG 61.173 66.667 16.16 2.45 31.46 4.35
1309 1382 2.809601 CCAGTACAGCGGCGTGTC 60.810 66.667 16.16 9.79 31.46 3.67
1310 1383 4.373116 CCCAGTACAGCGGCGTGT 62.373 66.667 9.37 14.04 34.21 4.49
1311 1384 4.063967 TCCCAGTACAGCGGCGTG 62.064 66.667 9.37 8.36 0.00 5.34
1312 1385 4.065281 GTCCCAGTACAGCGGCGT 62.065 66.667 9.37 0.00 0.00 5.68
1456 1574 4.096732 ACTCAATCAAAGCGCAATTACC 57.903 40.909 11.47 0.00 0.00 2.85
1468 1586 2.162208 GGCTGATCGCAAACTCAATCAA 59.838 45.455 10.82 0.00 41.67 2.57
1728 1862 7.256296 CCATTTTCTCCAAAGTACCTGGAAAAT 60.256 37.037 13.76 13.66 42.43 1.82
1730 1864 5.538433 CCATTTTCTCCAAAGTACCTGGAAA 59.462 40.000 13.76 7.43 42.43 3.13
1733 1867 3.763897 CCCATTTTCTCCAAAGTACCTGG 59.236 47.826 5.40 5.40 35.05 4.45
1762 1896 5.645497 GTGCTGTCTCCAATATCTTTGAAGT 59.355 40.000 0.00 0.00 0.00 3.01
1794 1928 1.996798 ACTTCTCCCTGTCTTCGTCA 58.003 50.000 0.00 0.00 0.00 4.35
1840 1974 9.793252 CATTTGATTTAGAACCAAGGACATAAG 57.207 33.333 0.00 0.00 0.00 1.73
2134 2268 5.675575 GCACAAAGCACAATAGATCTTCCAG 60.676 44.000 0.00 0.00 44.79 3.86
2209 2343 9.365311 CAAGTGTACACTACAAAAACGATTAAG 57.635 33.333 28.13 0.00 41.58 1.85
2216 2350 6.425577 TCACCAAGTGTACACTACAAAAAC 57.574 37.500 28.13 0.00 41.58 2.43
2620 2758 9.669887 ACAACCTGTTTTGAAATATATACGGTA 57.330 29.630 0.00 0.00 0.00 4.02
2621 2759 8.570068 ACAACCTGTTTTGAAATATATACGGT 57.430 30.769 0.00 0.00 0.00 4.83
2622 2760 9.284594 CAACAACCTGTTTTGAAATATATACGG 57.715 33.333 0.00 0.00 38.77 4.02
2623 2761 9.834628 ACAACAACCTGTTTTGAAATATATACG 57.165 29.630 10.03 0.00 38.77 3.06
2637 2775 4.882842 AACCTCAAAACAACAACCTGTT 57.117 36.364 0.00 0.00 42.08 3.16
2638 2776 5.479027 AGTTAACCTCAAAACAACAACCTGT 59.521 36.000 0.88 0.00 0.00 4.00
2639 2777 5.804979 CAGTTAACCTCAAAACAACAACCTG 59.195 40.000 0.88 0.00 0.00 4.00
2640 2778 5.105513 CCAGTTAACCTCAAAACAACAACCT 60.106 40.000 0.88 0.00 0.00 3.50
2641 2779 5.106442 CCAGTTAACCTCAAAACAACAACC 58.894 41.667 0.88 0.00 0.00 3.77
2642 2780 4.565166 GCCAGTTAACCTCAAAACAACAAC 59.435 41.667 0.88 0.00 0.00 3.32
2643 2781 4.220821 TGCCAGTTAACCTCAAAACAACAA 59.779 37.500 0.88 0.00 0.00 2.83
2644 2782 3.764434 TGCCAGTTAACCTCAAAACAACA 59.236 39.130 0.88 0.00 0.00 3.33
2645 2783 4.379339 TGCCAGTTAACCTCAAAACAAC 57.621 40.909 0.88 0.00 0.00 3.32
2646 2784 5.186021 TCTTTGCCAGTTAACCTCAAAACAA 59.814 36.000 14.36 4.33 0.00 2.83
2668 2806 4.142534 CGCTGATTCACATTTTGGTGATCT 60.143 41.667 0.00 0.00 46.37 2.75
2718 2856 4.862641 AAACAACTAGGATGGCTGGTAT 57.137 40.909 0.00 0.00 0.00 2.73
2910 3230 5.472820 CCCACCAAACAACAAATAATTGCAT 59.527 36.000 0.00 0.00 40.34 3.96
2932 3252 4.092116 AGCTTTCAGAATATAGCCACCC 57.908 45.455 2.23 0.00 34.19 4.61
2970 3290 5.389859 ACGATCAAGAATTTTGAATGCCA 57.610 34.783 0.00 0.00 31.55 4.92
2998 3318 4.717233 TTTTAACATCATCGCCTGCAAT 57.283 36.364 0.00 0.00 0.00 3.56
3074 3394 3.607741 AGTTCAACATGATCTGCTCCAG 58.392 45.455 0.00 0.00 0.00 3.86
3111 3436 2.152830 TCGTTAACCCGACCAATTTGG 58.847 47.619 14.02 14.02 45.02 3.28
3121 3448 4.385447 TCGAACAATTAAGTCGTTAACCCG 59.615 41.667 0.00 0.00 30.79 5.28
3123 3450 5.731263 GCATCGAACAATTAAGTCGTTAACC 59.269 40.000 0.00 0.00 30.79 2.85
3129 3456 4.840401 TCTGCATCGAACAATTAAGTCG 57.160 40.909 0.00 0.00 0.00 4.18
3153 3480 5.113502 CAGTTCTTGCTTTCCAAACCTAG 57.886 43.478 0.00 0.00 31.94 3.02
3182 3509 4.835615 AGTCCAATGACACTGTCTTCTACT 59.164 41.667 10.54 6.08 44.33 2.57
3234 3561 6.255453 TGTTCAAAAGCGTACGTTTAGTAAGT 59.745 34.615 17.86 0.00 37.18 2.24
3236 3563 6.410038 GTGTTCAAAAGCGTACGTTTAGTAA 58.590 36.000 17.86 9.21 37.02 2.24
3237 3564 5.331458 CGTGTTCAAAAGCGTACGTTTAGTA 60.331 40.000 17.86 5.29 0.00 1.82
3239 3566 3.890246 CGTGTTCAAAAGCGTACGTTTAG 59.110 43.478 17.86 13.24 0.00 1.85
3240 3567 3.549471 TCGTGTTCAAAAGCGTACGTTTA 59.451 39.130 17.86 0.00 33.68 2.01
3243 3570 1.519758 CTCGTGTTCAAAAGCGTACGT 59.480 47.619 17.90 0.00 33.68 3.57
3244 3571 1.782569 TCTCGTGTTCAAAAGCGTACG 59.217 47.619 11.84 11.84 0.00 3.67
3245 3572 3.722123 CATCTCGTGTTCAAAAGCGTAC 58.278 45.455 0.00 0.00 0.00 3.67
3246 3573 2.156891 GCATCTCGTGTTCAAAAGCGTA 59.843 45.455 0.00 0.00 0.00 4.42
3247 3574 1.069906 GCATCTCGTGTTCAAAAGCGT 60.070 47.619 0.00 0.00 0.00 5.07
3248 3575 1.595609 GCATCTCGTGTTCAAAAGCG 58.404 50.000 0.00 0.00 0.00 4.68
3249 3576 1.537202 AGGCATCTCGTGTTCAAAAGC 59.463 47.619 0.00 0.00 0.00 3.51
3267 3681 4.789012 TTGCTGCCTATCAAAAGAAAGG 57.211 40.909 0.00 0.00 0.00 3.11
3279 3693 0.322816 CCTGCTCCTTTTGCTGCCTA 60.323 55.000 0.00 0.00 0.00 3.93
3333 3747 6.238239 GCTAAGCTTGATCTTACTTGGTTAGC 60.238 42.308 9.86 15.42 46.43 3.09
3349 3763 6.092670 TGAGCACTAATTTGTAGCTAAGCTTG 59.907 38.462 9.86 0.01 40.44 4.01
3350 3764 6.173339 TGAGCACTAATTTGTAGCTAAGCTT 58.827 36.000 3.48 3.48 40.44 3.74
3365 3779 3.072330 TGGGATGTTGAACTGAGCACTAA 59.928 43.478 0.00 0.00 0.00 2.24
3368 3782 1.808945 CTGGGATGTTGAACTGAGCAC 59.191 52.381 0.00 0.00 0.00 4.40
3371 3785 2.430465 CACCTGGGATGTTGAACTGAG 58.570 52.381 0.00 0.00 0.00 3.35
3377 3791 0.770499 TCAAGCACCTGGGATGTTGA 59.230 50.000 0.00 0.00 0.00 3.18
3378 3792 1.747355 GATCAAGCACCTGGGATGTTG 59.253 52.381 0.00 0.00 0.00 3.33
3383 3797 0.252881 AGGAGATCAAGCACCTGGGA 60.253 55.000 0.00 0.00 0.00 4.37
3384 3798 0.107312 CAGGAGATCAAGCACCTGGG 60.107 60.000 4.09 0.00 44.04 4.45
3388 3802 4.704057 AGAAAATTCAGGAGATCAAGCACC 59.296 41.667 0.00 0.00 0.00 5.01
3389 3803 5.182760 ACAGAAAATTCAGGAGATCAAGCAC 59.817 40.000 0.00 0.00 0.00 4.40
3393 3807 7.257790 TCCTACAGAAAATTCAGGAGATCAA 57.742 36.000 0.00 0.00 31.76 2.57
3445 3859 4.643784 ACCTACCTCACATTACTAAGGTCG 59.356 45.833 0.00 0.00 41.20 4.79
3448 3862 6.832384 TCACTACCTACCTCACATTACTAAGG 59.168 42.308 0.00 0.00 34.94 2.69
3451 3865 8.834004 AAATCACTACCTACCTCACATTACTA 57.166 34.615 0.00 0.00 0.00 1.82
3466 3880 6.655425 AGACTAAAAGAGGCAAAATCACTACC 59.345 38.462 0.00 0.00 34.40 3.18
3470 3884 6.809630 AGAGACTAAAAGAGGCAAAATCAC 57.190 37.500 0.00 0.00 34.40 3.06
3474 3888 7.639113 TGAAAAGAGACTAAAAGAGGCAAAA 57.361 32.000 0.00 0.00 34.40 2.44
3477 3891 6.533730 TGATGAAAAGAGACTAAAAGAGGCA 58.466 36.000 0.00 0.00 34.40 4.75
3478 3892 6.093357 CCTGATGAAAAGAGACTAAAAGAGGC 59.907 42.308 0.00 0.00 0.00 4.70
3487 3901 5.998363 GTGGTTTACCTGATGAAAAGAGACT 59.002 40.000 0.00 0.00 36.82 3.24
3488 3902 5.763204 TGTGGTTTACCTGATGAAAAGAGAC 59.237 40.000 0.00 0.00 36.82 3.36
3489 3903 5.935945 TGTGGTTTACCTGATGAAAAGAGA 58.064 37.500 0.00 0.00 36.82 3.10
3490 3904 6.656693 AGATGTGGTTTACCTGATGAAAAGAG 59.343 38.462 0.00 0.00 36.82 2.85
3492 3906 6.207417 ACAGATGTGGTTTACCTGATGAAAAG 59.793 38.462 0.00 0.00 36.82 2.27
3513 3937 8.325787 TCCTCAAGCCTGTAAATAATTAACAGA 58.674 33.333 14.65 0.00 0.00 3.41
3523 3947 3.356529 CAGGTCCTCAAGCCTGTAAAT 57.643 47.619 2.66 0.00 45.28 1.40
3597 4021 0.593128 CCAGCAGAAAAAGGACCGTG 59.407 55.000 0.00 0.00 0.00 4.94
3598 4022 0.182775 ACCAGCAGAAAAAGGACCGT 59.817 50.000 0.00 0.00 0.00 4.83
3600 4024 0.961753 CCACCAGCAGAAAAAGGACC 59.038 55.000 0.00 0.00 0.00 4.46
3602 4026 1.172180 CGCCACCAGCAGAAAAAGGA 61.172 55.000 0.00 0.00 44.04 3.36
3607 4031 2.334946 GCATCGCCACCAGCAGAAA 61.335 57.895 0.00 0.00 44.04 2.52
3613 4037 1.750018 TGGATTGCATCGCCACCAG 60.750 57.895 0.00 0.00 0.00 4.00
3624 4048 2.676471 AACCCCTGCGTGGATTGC 60.676 61.111 0.00 0.00 38.35 3.56
3633 4057 1.152673 GGGATCATCCAACCCCTGC 60.153 63.158 5.89 0.00 38.64 4.85
3644 4068 5.135020 AGGTGAATGAATTAGTGGGGATCAT 59.865 40.000 0.00 0.00 32.36 2.45
3661 4103 2.566746 AGAGGGATTGTGGAGGTGAAT 58.433 47.619 0.00 0.00 0.00 2.57
3668 4110 5.964477 AGTGATTTAGTAGAGGGATTGTGGA 59.036 40.000 0.00 0.00 0.00 4.02
3705 4147 0.681243 GATTGGGTGAGGGGCAAGAC 60.681 60.000 0.00 0.00 0.00 3.01
3717 4159 3.244561 ACAATTCAGTGACGAGATTGGGT 60.245 43.478 16.07 0.00 0.00 4.51
3718 4160 3.125829 CACAATTCAGTGACGAGATTGGG 59.874 47.826 16.07 10.45 42.05 4.12
3719 4161 3.425359 GCACAATTCAGTGACGAGATTGG 60.425 47.826 16.07 8.71 42.05 3.16
3720 4162 3.187022 TGCACAATTCAGTGACGAGATTG 59.813 43.478 11.90 11.90 42.05 2.67
3722 4164 3.044235 TGCACAATTCAGTGACGAGAT 57.956 42.857 0.00 0.00 42.05 2.75
3723 4165 2.524569 TGCACAATTCAGTGACGAGA 57.475 45.000 0.00 0.00 42.05 4.04
3724 4166 3.818961 ATTGCACAATTCAGTGACGAG 57.181 42.857 0.00 0.00 42.05 4.18
3726 4168 4.997107 CAAAATTGCACAATTCAGTGACG 58.003 39.130 8.94 0.00 42.05 4.35
3743 4185 3.188460 CCGCTACACTGTAACAGCAAAAT 59.812 43.478 3.84 0.00 34.37 1.82
3744 4186 2.546368 CCGCTACACTGTAACAGCAAAA 59.454 45.455 3.84 0.00 34.37 2.44
3745 4187 2.139917 CCGCTACACTGTAACAGCAAA 58.860 47.619 3.84 0.00 34.37 3.68
3769 4211 5.417811 TGTCGTTGTTGTAACTCCAAACTA 58.582 37.500 0.00 0.00 0.00 2.24
3897 4355 2.293122 TCACCAACAGCTGCAATGTTAC 59.707 45.455 15.27 0.00 38.80 2.50
3915 4373 2.030457 CGTAATCGGCTGGAAACATCAC 59.970 50.000 0.00 0.00 41.51 3.06
3929 4387 2.093152 GCAAACAGTACCACCGTAATCG 59.907 50.000 0.00 0.00 0.00 3.34
4003 4484 6.097981 TGACTGCTGAGAATGAGATGATAGTT 59.902 38.462 0.00 0.00 0.00 2.24
4077 4558 2.485122 GCCCGTGCTTATGTGTGC 59.515 61.111 0.00 0.00 33.53 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.