Multiple sequence alignment - TraesCS2D01G346800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G346800 chr2D 100.000 3202 0 0 1001 4202 444759481 444762682 0.000000e+00 5914
1 TraesCS2D01G346800 chr2D 100.000 329 0 0 1 329 444758481 444758809 3.590000e-170 608
2 TraesCS2D01G346800 chr2B 97.533 3202 78 1 1001 4202 523082426 523085626 0.000000e+00 5474
3 TraesCS2D01G346800 chr2A 96.921 3215 75 7 1001 4202 587271539 587274742 0.000000e+00 5367
4 TraesCS2D01G346800 chr3D 98.784 329 4 0 1 329 75138788 75138460 1.680000e-163 586
5 TraesCS2D01G346800 chr6D 98.480 329 5 0 1 329 12748186 12748514 7.830000e-162 580
6 TraesCS2D01G346800 chr6D 97.264 329 9 0 1 329 118581477 118581805 3.670000e-155 558
7 TraesCS2D01G346800 chr1D 98.176 329 6 0 1 329 241265694 241266022 3.640000e-160 575
8 TraesCS2D01G346800 chr1D 96.657 329 11 0 1 329 418892009 418892337 7.940000e-152 547
9 TraesCS2D01G346800 chr1D 95.745 329 6 4 1 329 404237177 404236857 1.340000e-144 523
10 TraesCS2D01G346800 chr1D 94.225 329 4 4 1 329 58122102 58122415 4.880000e-134 488
11 TraesCS2D01G346800 chr7D 97.879 330 6 1 1 329 10857618 10857289 1.700000e-158 569
12 TraesCS2D01G346800 chr4D 97.872 329 6 1 1 329 50422623 50422950 6.100000e-158 568
13 TraesCS2D01G346800 chr7B 88.991 218 14 2 110 327 584235621 584235414 1.160000e-65 261


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G346800 chr2D 444758481 444762682 4201 False 3261 5914 100.000 1 4202 2 chr2D.!!$F1 4201
1 TraesCS2D01G346800 chr2B 523082426 523085626 3200 False 5474 5474 97.533 1001 4202 1 chr2B.!!$F1 3201
2 TraesCS2D01G346800 chr2A 587271539 587274742 3203 False 5367 5367 96.921 1001 4202 1 chr2A.!!$F1 3201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 218 0.035056 GTAGTCTGCCATGGCTGGTT 60.035 55.0 34.94 26.39 45.10 3.67 F
218 219 0.035152 TAGTCTGCCATGGCTGGTTG 60.035 55.0 34.94 20.85 45.10 3.77 F
1537 1538 0.683179 GGGAGATTTTTGGGGTCGGG 60.683 60.0 0.00 0.00 0.00 5.14 F
1782 1783 0.888285 AAGAGTGCCACTTCAGCAGC 60.888 55.0 0.00 0.00 41.87 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 1670 0.459759 TCTGCGATTGCTGAGCTGAG 60.460 55.000 10.29 0.0 43.17 3.35 R
2203 2204 1.163554 CAGAAGGGAGCTCTGCAAAC 58.836 55.000 14.64 0.0 34.32 2.93 R
2352 2353 3.877559 CCAGCTAATTGTGTGATCTCCA 58.122 45.455 0.00 0.0 0.00 3.86 R
4144 4158 4.017222 TCCATGAATCCATTTCCAGAACCT 60.017 41.667 0.00 0.0 33.04 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.234368 GTGACGGTTGCAACACTTG 57.766 52.632 29.55 18.00 0.00 3.16
19 20 0.450184 GTGACGGTTGCAACACTTGT 59.550 50.000 29.55 20.82 0.00 3.16
20 21 1.666700 GTGACGGTTGCAACACTTGTA 59.333 47.619 29.55 8.88 0.00 2.41
21 22 2.289547 GTGACGGTTGCAACACTTGTAT 59.710 45.455 29.55 7.43 0.00 2.29
22 23 3.495377 GTGACGGTTGCAACACTTGTATA 59.505 43.478 29.55 12.12 0.00 1.47
23 24 3.495377 TGACGGTTGCAACACTTGTATAC 59.505 43.478 29.55 9.03 0.00 1.47
24 25 2.477375 ACGGTTGCAACACTTGTATACG 59.523 45.455 29.55 21.27 33.50 3.06
25 26 2.723618 CGGTTGCAACACTTGTATACGC 60.724 50.000 29.55 7.83 0.00 4.42
26 27 2.492001 GTTGCAACACTTGTATACGCG 58.508 47.619 24.52 3.53 0.00 6.01
27 28 1.072391 TGCAACACTTGTATACGCGG 58.928 50.000 12.47 0.00 0.00 6.46
28 29 0.372334 GCAACACTTGTATACGCGGG 59.628 55.000 12.47 0.00 0.00 6.13
29 30 1.999048 CAACACTTGTATACGCGGGA 58.001 50.000 12.47 0.00 0.00 5.14
30 31 1.924524 CAACACTTGTATACGCGGGAG 59.075 52.381 12.47 0.96 0.00 4.30
31 32 0.458669 ACACTTGTATACGCGGGAGG 59.541 55.000 12.47 0.00 0.00 4.30
32 33 0.742505 CACTTGTATACGCGGGAGGA 59.257 55.000 12.47 0.00 0.00 3.71
33 34 1.340248 CACTTGTATACGCGGGAGGAT 59.660 52.381 12.47 0.00 0.00 3.24
34 35 1.612463 ACTTGTATACGCGGGAGGATC 59.388 52.381 12.47 0.00 0.00 3.36
82 83 3.435186 GGCAAGGGAGCGCTTCAC 61.435 66.667 19.50 9.57 34.64 3.18
83 84 3.435186 GCAAGGGAGCGCTTCACC 61.435 66.667 19.50 17.58 0.00 4.02
84 85 3.121030 CAAGGGAGCGCTTCACCG 61.121 66.667 19.50 0.00 0.00 4.94
85 86 4.394712 AAGGGAGCGCTTCACCGG 62.395 66.667 19.50 0.00 0.00 5.28
102 103 4.451150 GCTGCGACCCCGTGATGA 62.451 66.667 0.00 0.00 38.24 2.92
103 104 2.509336 CTGCGACCCCGTGATGAC 60.509 66.667 0.00 0.00 38.24 3.06
104 105 4.429212 TGCGACCCCGTGATGACG 62.429 66.667 0.00 0.00 45.67 4.35
121 122 3.258498 CGATGACGTCGTTTTGCTG 57.742 52.632 12.40 0.00 45.19 4.41
122 123 0.785708 CGATGACGTCGTTTTGCTGC 60.786 55.000 12.40 0.00 45.19 5.25
123 124 0.234625 GATGACGTCGTTTTGCTGCA 59.765 50.000 12.40 0.00 0.00 4.41
124 125 0.660488 ATGACGTCGTTTTGCTGCAA 59.340 45.000 11.69 11.69 0.00 4.08
125 126 0.247894 TGACGTCGTTTTGCTGCAAC 60.248 50.000 15.72 4.33 0.00 4.17
126 127 0.928451 GACGTCGTTTTGCTGCAACC 60.928 55.000 15.72 7.82 0.00 3.77
127 128 2.003443 CGTCGTTTTGCTGCAACCG 61.003 57.895 15.72 19.05 0.00 4.44
128 129 1.063488 GTCGTTTTGCTGCAACCGT 59.937 52.632 24.09 0.00 0.00 4.83
129 130 0.305313 GTCGTTTTGCTGCAACCGTA 59.695 50.000 24.09 13.65 0.00 4.02
130 131 0.584396 TCGTTTTGCTGCAACCGTAG 59.416 50.000 24.09 12.39 0.00 3.51
131 132 0.306533 CGTTTTGCTGCAACCGTAGT 59.693 50.000 15.72 0.00 0.00 2.73
132 133 1.527736 CGTTTTGCTGCAACCGTAGTA 59.472 47.619 15.72 0.00 0.00 1.82
133 134 2.411031 CGTTTTGCTGCAACCGTAGTAG 60.411 50.000 15.72 0.00 0.00 2.57
134 135 2.803956 GTTTTGCTGCAACCGTAGTAGA 59.196 45.455 15.72 0.00 0.00 2.59
135 136 3.328382 TTTGCTGCAACCGTAGTAGAT 57.672 42.857 15.72 0.00 0.00 1.98
136 137 3.328382 TTGCTGCAACCGTAGTAGATT 57.672 42.857 11.69 0.00 0.00 2.40
137 138 3.328382 TGCTGCAACCGTAGTAGATTT 57.672 42.857 0.00 0.00 0.00 2.17
138 139 3.670625 TGCTGCAACCGTAGTAGATTTT 58.329 40.909 0.00 0.00 0.00 1.82
139 140 4.069304 TGCTGCAACCGTAGTAGATTTTT 58.931 39.130 0.00 0.00 0.00 1.94
140 141 4.083537 TGCTGCAACCGTAGTAGATTTTTG 60.084 41.667 0.00 0.00 0.00 2.44
141 142 4.403453 CTGCAACCGTAGTAGATTTTTGC 58.597 43.478 0.00 0.00 38.65 3.68
142 143 4.069304 TGCAACCGTAGTAGATTTTTGCT 58.931 39.130 0.00 0.00 38.89 3.91
143 144 5.239351 TGCAACCGTAGTAGATTTTTGCTA 58.761 37.500 0.00 0.00 38.89 3.49
144 145 5.121142 TGCAACCGTAGTAGATTTTTGCTAC 59.879 40.000 0.00 0.00 38.89 3.58
145 146 5.446875 GCAACCGTAGTAGATTTTTGCTACC 60.447 44.000 0.00 0.00 39.17 3.18
146 147 5.410355 ACCGTAGTAGATTTTTGCTACCA 57.590 39.130 0.00 0.00 39.17 3.25
147 148 5.173664 ACCGTAGTAGATTTTTGCTACCAC 58.826 41.667 0.00 0.00 39.17 4.16
148 149 4.569564 CCGTAGTAGATTTTTGCTACCACC 59.430 45.833 0.00 0.00 39.17 4.61
149 150 4.266976 CGTAGTAGATTTTTGCTACCACCG 59.733 45.833 0.00 0.00 39.17 4.94
150 151 3.606687 AGTAGATTTTTGCTACCACCGG 58.393 45.455 0.00 0.00 39.17 5.28
151 152 1.173913 AGATTTTTGCTACCACCGGC 58.826 50.000 0.00 0.00 0.00 6.13
152 153 0.179174 GATTTTTGCTACCACCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
153 154 0.606944 ATTTTTGCTACCACCGGCGA 60.607 50.000 9.30 0.00 0.00 5.54
154 155 0.606944 TTTTTGCTACCACCGGCGAT 60.607 50.000 9.30 0.00 0.00 4.58
155 156 0.606944 TTTTGCTACCACCGGCGATT 60.607 50.000 9.30 0.00 0.00 3.34
156 157 1.302383 TTTGCTACCACCGGCGATTG 61.302 55.000 9.30 4.78 0.00 2.67
157 158 2.173758 TTGCTACCACCGGCGATTGA 62.174 55.000 9.30 0.00 0.00 2.57
158 159 1.448893 GCTACCACCGGCGATTGAA 60.449 57.895 9.30 0.00 0.00 2.69
159 160 0.814010 GCTACCACCGGCGATTGAAT 60.814 55.000 9.30 0.00 0.00 2.57
160 161 1.663695 CTACCACCGGCGATTGAATT 58.336 50.000 9.30 0.00 0.00 2.17
161 162 1.597663 CTACCACCGGCGATTGAATTC 59.402 52.381 9.30 0.00 0.00 2.17
162 163 1.351707 CCACCGGCGATTGAATTCG 59.648 57.895 9.30 0.00 41.99 3.34
171 172 2.956386 CGATTGAATTCGCTACAACCG 58.044 47.619 0.04 0.00 31.60 4.44
172 173 2.285602 CGATTGAATTCGCTACAACCGG 60.286 50.000 0.00 0.00 31.60 5.28
173 174 2.172851 TTGAATTCGCTACAACCGGT 57.827 45.000 0.00 0.00 0.00 5.28
174 175 2.172851 TGAATTCGCTACAACCGGTT 57.827 45.000 15.86 15.86 0.00 4.44
175 176 2.070783 TGAATTCGCTACAACCGGTTC 58.929 47.619 19.24 5.13 0.00 3.62
176 177 1.395954 GAATTCGCTACAACCGGTTCC 59.604 52.381 19.24 5.31 0.00 3.62
177 178 0.322322 ATTCGCTACAACCGGTTCCA 59.678 50.000 19.24 7.06 0.00 3.53
178 179 0.320073 TTCGCTACAACCGGTTCCAG 60.320 55.000 19.24 17.83 0.00 3.86
179 180 2.388232 CGCTACAACCGGTTCCAGC 61.388 63.158 28.31 28.31 0.00 4.85
180 181 1.302192 GCTACAACCGGTTCCAGCA 60.302 57.895 31.10 9.64 0.00 4.41
181 182 0.887387 GCTACAACCGGTTCCAGCAA 60.887 55.000 31.10 10.37 0.00 3.91
182 183 1.600023 CTACAACCGGTTCCAGCAAA 58.400 50.000 19.24 0.00 0.00 3.68
183 184 1.950909 CTACAACCGGTTCCAGCAAAA 59.049 47.619 19.24 0.00 0.00 2.44
184 185 1.187087 ACAACCGGTTCCAGCAAAAA 58.813 45.000 19.24 0.00 0.00 1.94
185 186 1.760029 ACAACCGGTTCCAGCAAAAAT 59.240 42.857 19.24 0.00 0.00 1.82
186 187 2.169561 ACAACCGGTTCCAGCAAAAATT 59.830 40.909 19.24 0.00 0.00 1.82
187 188 2.799978 CAACCGGTTCCAGCAAAAATTC 59.200 45.455 19.24 0.00 0.00 2.17
188 189 2.035632 ACCGGTTCCAGCAAAAATTCA 58.964 42.857 0.00 0.00 0.00 2.57
189 190 2.223947 ACCGGTTCCAGCAAAAATTCAC 60.224 45.455 0.00 0.00 0.00 3.18
190 191 2.403259 CGGTTCCAGCAAAAATTCACC 58.597 47.619 0.00 0.00 0.00 4.02
191 192 2.403259 GGTTCCAGCAAAAATTCACCG 58.597 47.619 0.00 0.00 0.00 4.94
192 193 2.223947 GGTTCCAGCAAAAATTCACCGT 60.224 45.455 0.00 0.00 0.00 4.83
193 194 2.791383 TCCAGCAAAAATTCACCGTG 57.209 45.000 0.00 0.00 0.00 4.94
194 195 2.302260 TCCAGCAAAAATTCACCGTGA 58.698 42.857 0.00 0.00 0.00 4.35
195 196 2.293122 TCCAGCAAAAATTCACCGTGAG 59.707 45.455 0.64 0.00 0.00 3.51
207 208 2.893398 CGTGAGGGGTAGTCTGCC 59.107 66.667 0.00 0.00 0.00 4.85
208 209 1.982395 CGTGAGGGGTAGTCTGCCA 60.982 63.158 9.40 0.00 0.00 4.92
209 210 1.330655 CGTGAGGGGTAGTCTGCCAT 61.331 60.000 9.40 0.00 0.00 4.40
210 211 0.179000 GTGAGGGGTAGTCTGCCATG 59.821 60.000 9.40 0.00 0.00 3.66
211 212 0.982852 TGAGGGGTAGTCTGCCATGG 60.983 60.000 7.63 7.63 0.00 3.66
212 213 2.193248 GGGGTAGTCTGCCATGGC 59.807 66.667 30.54 30.54 42.35 4.40
213 214 2.378634 GGGGTAGTCTGCCATGGCT 61.379 63.158 35.53 19.28 42.51 4.75
214 215 1.153086 GGGTAGTCTGCCATGGCTG 60.153 63.158 35.53 33.57 42.51 4.85
215 216 1.153086 GGTAGTCTGCCATGGCTGG 60.153 63.158 34.94 27.11 46.17 4.85
216 217 1.604378 GTAGTCTGCCATGGCTGGT 59.396 57.895 34.94 26.31 45.10 4.00
217 218 0.035056 GTAGTCTGCCATGGCTGGTT 60.035 55.000 34.94 26.39 45.10 3.67
218 219 0.035152 TAGTCTGCCATGGCTGGTTG 60.035 55.000 34.94 20.85 45.10 3.77
219 220 2.677524 TCTGCCATGGCTGGTTGC 60.678 61.111 34.94 11.79 45.10 4.17
220 221 2.992689 CTGCCATGGCTGGTTGCA 60.993 61.111 35.53 14.21 45.10 4.08
221 222 2.992689 TGCCATGGCTGGTTGCAG 60.993 61.111 35.53 0.00 45.10 4.41
222 223 4.446413 GCCATGGCTGGTTGCAGC 62.446 66.667 29.98 0.00 45.10 5.25
223 224 2.678934 CCATGGCTGGTTGCAGCT 60.679 61.111 0.00 0.00 46.69 4.24
224 225 2.707849 CCATGGCTGGTTGCAGCTC 61.708 63.158 0.00 0.00 46.69 4.09
225 226 2.362120 ATGGCTGGTTGCAGCTCC 60.362 61.111 0.00 0.52 46.69 4.70
250 251 3.207669 CCGGGTCCGACGAGGTAG 61.208 72.222 11.39 0.00 42.83 3.18
251 252 3.207669 CGGGTCCGACGAGGTAGG 61.208 72.222 2.83 0.00 42.83 3.18
252 253 3.525545 GGGTCCGACGAGGTAGGC 61.526 72.222 0.00 0.00 41.99 3.93
253 254 2.753043 GGTCCGACGAGGTAGGCA 60.753 66.667 0.00 0.00 41.99 4.75
254 255 2.772691 GGTCCGACGAGGTAGGCAG 61.773 68.421 0.00 0.00 41.99 4.85
255 256 1.748122 GTCCGACGAGGTAGGCAGA 60.748 63.158 0.00 0.00 41.99 4.26
256 257 1.451567 TCCGACGAGGTAGGCAGAG 60.452 63.158 0.00 0.00 41.99 3.35
257 258 2.409651 CGACGAGGTAGGCAGAGC 59.590 66.667 0.00 0.00 0.00 4.09
258 259 2.115911 CGACGAGGTAGGCAGAGCT 61.116 63.158 0.00 0.00 0.00 4.09
259 260 1.731093 GACGAGGTAGGCAGAGCTC 59.269 63.158 5.27 5.27 39.98 4.09
260 261 1.730451 GACGAGGTAGGCAGAGCTCC 61.730 65.000 10.93 0.00 40.20 4.70
261 262 2.840066 CGAGGTAGGCAGAGCTCCG 61.840 68.421 10.93 0.00 40.20 4.63
262 263 1.454111 GAGGTAGGCAGAGCTCCGA 60.454 63.158 10.93 0.00 37.89 4.55
263 264 0.825840 GAGGTAGGCAGAGCTCCGAT 60.826 60.000 10.93 0.00 37.89 4.18
264 265 1.112315 AGGTAGGCAGAGCTCCGATG 61.112 60.000 10.93 3.29 0.00 3.84
265 266 1.300542 GTAGGCAGAGCTCCGATGC 60.301 63.158 16.04 16.04 39.25 3.91
266 267 1.758122 TAGGCAGAGCTCCGATGCA 60.758 57.895 23.20 5.74 41.78 3.96
267 268 1.117749 TAGGCAGAGCTCCGATGCAT 61.118 55.000 23.20 19.86 41.78 3.96
268 269 2.252346 GGCAGAGCTCCGATGCATG 61.252 63.158 23.20 10.02 41.78 4.06
269 270 2.894565 GCAGAGCTCCGATGCATGC 61.895 63.158 18.64 11.82 39.75 4.06
270 271 2.279985 AGAGCTCCGATGCATGCG 60.280 61.111 14.09 7.77 34.99 4.73
271 272 2.279717 GAGCTCCGATGCATGCGA 60.280 61.111 14.09 2.83 34.99 5.10
272 273 2.279985 AGCTCCGATGCATGCGAG 60.280 61.111 14.09 14.03 34.99 5.03
273 274 3.344215 GCTCCGATGCATGCGAGG 61.344 66.667 14.09 15.68 0.00 4.63
274 275 2.418777 CTCCGATGCATGCGAGGA 59.581 61.111 21.89 21.89 0.00 3.71
275 276 1.227350 CTCCGATGCATGCGAGGAA 60.227 57.895 22.93 3.81 0.00 3.36
276 277 1.220169 CTCCGATGCATGCGAGGAAG 61.220 60.000 22.93 15.56 0.00 3.46
277 278 2.249535 CCGATGCATGCGAGGAAGG 61.250 63.158 17.68 9.43 0.00 3.46
278 279 2.890109 CGATGCATGCGAGGAAGGC 61.890 63.158 14.09 0.00 0.00 4.35
279 280 2.890109 GATGCATGCGAGGAAGGCG 61.890 63.158 14.09 0.00 0.00 5.52
280 281 3.687321 ATGCATGCGAGGAAGGCGT 62.687 57.895 14.09 0.00 0.00 5.68
281 282 3.567797 GCATGCGAGGAAGGCGTC 61.568 66.667 0.00 0.00 0.00 5.19
300 301 3.069946 CCGTGGTAGCACCCCGTA 61.070 66.667 18.90 0.00 37.43 4.02
301 302 2.493030 CGTGGTAGCACCCCGTAG 59.507 66.667 18.90 0.33 37.50 3.51
302 303 2.186125 GTGGTAGCACCCCGTAGC 59.814 66.667 14.20 0.00 37.50 3.58
303 304 2.284039 TGGTAGCACCCCGTAGCA 60.284 61.111 0.00 0.00 37.50 3.49
304 305 2.186125 GGTAGCACCCCGTAGCAC 59.814 66.667 0.00 0.00 30.04 4.40
305 306 2.356780 GGTAGCACCCCGTAGCACT 61.357 63.158 0.00 0.00 30.04 4.40
306 307 1.153628 GTAGCACCCCGTAGCACTG 60.154 63.158 0.00 0.00 0.00 3.66
307 308 2.355986 TAGCACCCCGTAGCACTGG 61.356 63.158 0.00 0.00 0.00 4.00
308 309 4.016706 GCACCCCGTAGCACTGGT 62.017 66.667 0.00 0.00 0.00 4.00
309 310 2.747686 CACCCCGTAGCACTGGTT 59.252 61.111 0.00 0.00 0.00 3.67
310 311 1.671054 CACCCCGTAGCACTGGTTG 60.671 63.158 0.00 0.00 0.00 3.77
320 321 2.177950 CACTGGTTGCAGCATCTCC 58.822 57.895 2.05 0.04 0.00 3.71
321 322 1.001641 ACTGGTTGCAGCATCTCCC 60.002 57.895 2.05 0.00 0.00 4.30
322 323 2.046023 TGGTTGCAGCATCTCCCG 60.046 61.111 2.05 0.00 0.00 5.14
323 324 2.045926 GGTTGCAGCATCTCCCGT 60.046 61.111 2.05 0.00 0.00 5.28
324 325 1.675641 GGTTGCAGCATCTCCCGTT 60.676 57.895 2.05 0.00 0.00 4.44
325 326 1.503542 GTTGCAGCATCTCCCGTTG 59.496 57.895 0.00 0.00 0.00 4.10
326 327 1.073025 TTGCAGCATCTCCCGTTGT 59.927 52.632 0.00 0.00 0.00 3.32
327 328 0.955428 TTGCAGCATCTCCCGTTGTC 60.955 55.000 0.00 0.00 0.00 3.18
328 329 1.375908 GCAGCATCTCCCGTTGTCA 60.376 57.895 0.00 0.00 0.00 3.58
1537 1538 0.683179 GGGAGATTTTTGGGGTCGGG 60.683 60.000 0.00 0.00 0.00 5.14
1549 1550 2.897972 GTCGGGTTCTACGGCCAT 59.102 61.111 2.24 0.00 0.00 4.40
1606 1607 2.808543 GTCACATTTTCTCTTGCTCGGT 59.191 45.455 0.00 0.00 0.00 4.69
1663 1664 3.714391 GAGCAACGGAAATAGTACGGAT 58.286 45.455 0.00 0.00 0.00 4.18
1669 1670 6.346359 GCAACGGAAATAGTACGGATGATAAC 60.346 42.308 0.00 0.00 0.00 1.89
1672 1673 6.263842 ACGGAAATAGTACGGATGATAACTCA 59.736 38.462 0.00 0.00 35.41 3.41
1677 1678 4.207955 AGTACGGATGATAACTCAGCTCA 58.792 43.478 0.00 0.00 37.92 4.26
1708 1709 1.217689 ACTAGCTGCTCTCTCCCTCAT 59.782 52.381 4.91 0.00 0.00 2.90
1782 1783 0.888285 AAGAGTGCCACTTCAGCAGC 60.888 55.000 0.00 0.00 41.87 5.25
2014 2015 7.921786 TGAGATATTTGTTGAAATTCCGTCT 57.078 32.000 0.00 0.00 33.63 4.18
2449 2450 0.700564 ATGAGGTGCCATTGGACAGT 59.299 50.000 6.95 0.00 0.00 3.55
2554 2555 3.055458 TGTCGAAAACTATCCAGGCATCA 60.055 43.478 0.00 0.00 0.00 3.07
3080 3081 6.002062 AGAAATCAGAAAAGTAAAGCCACG 57.998 37.500 0.00 0.00 0.00 4.94
3173 3178 9.035607 CCATCTGTACAGTACATTATTCTTGTC 57.964 37.037 21.99 0.00 38.15 3.18
3559 3573 2.103771 GTGGCTGCCATAGATCTTCTGA 59.896 50.000 26.22 0.00 35.28 3.27
4144 4158 3.243501 GCTTCACACATTCTTCCTTGCAA 60.244 43.478 0.00 0.00 0.00 4.08
4145 4159 4.543692 CTTCACACATTCTTCCTTGCAAG 58.456 43.478 19.93 19.93 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.450184 ACAAGTGTTGCAACCGTCAC 59.550 50.000 26.14 17.20 0.00 3.67
1 2 2.025589 TACAAGTGTTGCAACCGTCA 57.974 45.000 26.14 5.18 0.00 4.35
2 3 3.422603 CGTATACAAGTGTTGCAACCGTC 60.423 47.826 26.14 16.01 0.00 4.79
3 4 2.477375 CGTATACAAGTGTTGCAACCGT 59.523 45.455 26.14 18.76 0.00 4.83
4 5 2.723618 GCGTATACAAGTGTTGCAACCG 60.724 50.000 26.14 18.57 0.00 4.44
5 6 2.723618 CGCGTATACAAGTGTTGCAACC 60.724 50.000 26.14 17.03 0.00 3.77
6 7 2.492001 CGCGTATACAAGTGTTGCAAC 58.508 47.619 22.83 22.83 0.00 4.17
7 8 1.461512 CCGCGTATACAAGTGTTGCAA 59.538 47.619 4.92 0.00 0.00 4.08
8 9 1.072391 CCGCGTATACAAGTGTTGCA 58.928 50.000 4.92 0.00 0.00 4.08
9 10 0.372334 CCCGCGTATACAAGTGTTGC 59.628 55.000 4.92 0.00 0.00 4.17
10 11 1.924524 CTCCCGCGTATACAAGTGTTG 59.075 52.381 4.92 0.00 0.00 3.33
11 12 1.134907 CCTCCCGCGTATACAAGTGTT 60.135 52.381 4.92 0.00 0.00 3.32
12 13 0.458669 CCTCCCGCGTATACAAGTGT 59.541 55.000 4.92 0.00 0.00 3.55
13 14 0.742505 TCCTCCCGCGTATACAAGTG 59.257 55.000 4.92 0.00 0.00 3.16
14 15 1.612463 GATCCTCCCGCGTATACAAGT 59.388 52.381 4.92 0.00 0.00 3.16
15 16 1.067776 GGATCCTCCCGCGTATACAAG 60.068 57.143 3.84 0.00 0.00 3.16
16 17 0.963962 GGATCCTCCCGCGTATACAA 59.036 55.000 3.84 0.00 0.00 2.41
17 18 1.239296 CGGATCCTCCCGCGTATACA 61.239 60.000 10.75 0.00 43.25 2.29
18 19 1.505353 CGGATCCTCCCGCGTATAC 59.495 63.158 10.75 0.00 43.25 1.47
19 20 3.991999 CGGATCCTCCCGCGTATA 58.008 61.111 10.75 0.00 43.25 1.47
65 66 3.435186 GTGAAGCGCTCCCTTGCC 61.435 66.667 12.06 0.00 0.00 4.52
66 67 3.435186 GGTGAAGCGCTCCCTTGC 61.435 66.667 12.06 0.00 0.00 4.01
67 68 3.121030 CGGTGAAGCGCTCCCTTG 61.121 66.667 12.06 0.00 0.00 3.61
68 69 4.394712 CCGGTGAAGCGCTCCCTT 62.395 66.667 12.06 0.00 0.00 3.95
85 86 4.451150 TCATCACGGGGTCGCAGC 62.451 66.667 0.00 0.00 40.63 5.25
86 87 2.509336 GTCATCACGGGGTCGCAG 60.509 66.667 0.00 0.00 40.63 5.18
87 88 4.429212 CGTCATCACGGGGTCGCA 62.429 66.667 0.00 0.00 42.73 5.10
88 89 3.426117 ATCGTCATCACGGGGTCGC 62.426 63.158 0.00 0.00 46.70 5.19
89 90 1.588932 CATCGTCATCACGGGGTCG 60.589 63.158 0.00 0.00 46.70 4.79
90 91 0.527817 GTCATCGTCATCACGGGGTC 60.528 60.000 0.00 0.00 46.70 4.46
91 92 1.515954 GTCATCGTCATCACGGGGT 59.484 57.895 0.00 0.00 46.70 4.95
92 93 1.588932 CGTCATCGTCATCACGGGG 60.589 63.158 0.00 0.00 46.70 5.73
93 94 3.997561 CGTCATCGTCATCACGGG 58.002 61.111 0.00 0.00 46.70 5.28
104 105 0.234625 TGCAGCAAAACGACGTCATC 59.765 50.000 17.16 0.00 0.00 2.92
105 106 0.660488 TTGCAGCAAAACGACGTCAT 59.340 45.000 17.16 0.00 0.00 3.06
106 107 0.247894 GTTGCAGCAAAACGACGTCA 60.248 50.000 17.16 0.00 0.00 4.35
107 108 0.928451 GGTTGCAGCAAAACGACGTC 60.928 55.000 10.11 5.18 0.00 4.34
108 109 1.063488 GGTTGCAGCAAAACGACGT 59.937 52.632 10.11 0.00 0.00 4.34
109 110 2.003443 CGGTTGCAGCAAAACGACG 61.003 57.895 22.49 13.14 31.07 5.12
110 111 0.305313 TACGGTTGCAGCAAAACGAC 59.695 50.000 29.67 12.07 32.85 4.34
111 112 0.584396 CTACGGTTGCAGCAAAACGA 59.416 50.000 29.67 17.12 32.85 3.85
112 113 0.306533 ACTACGGTTGCAGCAAAACG 59.693 50.000 24.25 24.25 34.06 3.60
113 114 2.803956 TCTACTACGGTTGCAGCAAAAC 59.196 45.455 10.11 5.18 0.00 2.43
114 115 3.114668 TCTACTACGGTTGCAGCAAAA 57.885 42.857 10.11 0.00 0.00 2.44
115 116 2.823924 TCTACTACGGTTGCAGCAAA 57.176 45.000 10.11 0.00 0.00 3.68
116 117 3.328382 AATCTACTACGGTTGCAGCAA 57.672 42.857 2.83 2.83 0.00 3.91
117 118 3.328382 AAATCTACTACGGTTGCAGCA 57.672 42.857 2.05 0.00 0.00 4.41
118 119 4.403453 CAAAAATCTACTACGGTTGCAGC 58.597 43.478 0.00 0.00 0.00 5.25
119 120 4.154195 AGCAAAAATCTACTACGGTTGCAG 59.846 41.667 8.05 0.00 41.73 4.41
120 121 4.069304 AGCAAAAATCTACTACGGTTGCA 58.931 39.130 8.05 0.00 41.73 4.08
121 122 4.680171 AGCAAAAATCTACTACGGTTGC 57.320 40.909 0.00 0.00 40.05 4.17
122 123 5.640357 TGGTAGCAAAAATCTACTACGGTTG 59.360 40.000 0.00 0.00 36.65 3.77
123 124 5.640783 GTGGTAGCAAAAATCTACTACGGTT 59.359 40.000 0.00 0.00 38.25 4.44
124 125 5.173664 GTGGTAGCAAAAATCTACTACGGT 58.826 41.667 0.00 0.00 38.25 4.83
125 126 4.569564 GGTGGTAGCAAAAATCTACTACGG 59.430 45.833 0.00 0.00 44.41 4.02
126 127 4.266976 CGGTGGTAGCAAAAATCTACTACG 59.733 45.833 0.00 4.79 44.41 3.51
127 128 4.569564 CCGGTGGTAGCAAAAATCTACTAC 59.430 45.833 0.00 7.76 43.44 2.73
128 129 4.761975 CCGGTGGTAGCAAAAATCTACTA 58.238 43.478 0.00 0.00 37.25 1.82
129 130 3.606687 CCGGTGGTAGCAAAAATCTACT 58.393 45.455 0.00 0.00 37.25 2.57
130 131 2.096980 GCCGGTGGTAGCAAAAATCTAC 59.903 50.000 1.90 0.00 36.55 2.59
131 132 2.361789 GCCGGTGGTAGCAAAAATCTA 58.638 47.619 1.90 0.00 0.00 1.98
132 133 1.173913 GCCGGTGGTAGCAAAAATCT 58.826 50.000 1.90 0.00 0.00 2.40
133 134 0.179174 CGCCGGTGGTAGCAAAAATC 60.179 55.000 7.26 0.00 0.00 2.17
134 135 0.606944 TCGCCGGTGGTAGCAAAAAT 60.607 50.000 16.49 0.00 0.00 1.82
135 136 0.606944 ATCGCCGGTGGTAGCAAAAA 60.607 50.000 16.49 0.00 0.00 1.94
136 137 0.606944 AATCGCCGGTGGTAGCAAAA 60.607 50.000 16.49 0.00 0.00 2.44
137 138 1.003112 AATCGCCGGTGGTAGCAAA 60.003 52.632 16.49 0.00 0.00 3.68
138 139 1.743623 CAATCGCCGGTGGTAGCAA 60.744 57.895 16.49 0.00 0.00 3.91
139 140 2.125310 CAATCGCCGGTGGTAGCA 60.125 61.111 16.49 0.00 0.00 3.49
140 141 0.814010 ATTCAATCGCCGGTGGTAGC 60.814 55.000 16.49 0.00 0.00 3.58
141 142 1.597663 GAATTCAATCGCCGGTGGTAG 59.402 52.381 16.49 5.15 0.00 3.18
142 143 1.658994 GAATTCAATCGCCGGTGGTA 58.341 50.000 16.49 0.00 0.00 3.25
143 144 1.366111 CGAATTCAATCGCCGGTGGT 61.366 55.000 16.49 4.51 35.85 4.16
144 145 1.351707 CGAATTCAATCGCCGGTGG 59.648 57.895 16.49 1.03 35.85 4.61
145 146 4.974468 CGAATTCAATCGCCGGTG 57.026 55.556 9.28 9.28 35.85 4.94
151 152 2.285602 CCGGTTGTAGCGAATTCAATCG 60.286 50.000 6.22 4.50 42.41 3.34
152 153 2.676342 ACCGGTTGTAGCGAATTCAATC 59.324 45.455 0.00 0.00 42.41 2.67
153 154 2.706890 ACCGGTTGTAGCGAATTCAAT 58.293 42.857 0.00 0.00 42.41 2.57
154 155 2.172851 ACCGGTTGTAGCGAATTCAA 57.827 45.000 0.00 0.00 42.41 2.69
155 156 2.070783 GAACCGGTTGTAGCGAATTCA 58.929 47.619 27.87 0.00 42.41 2.57
156 157 1.395954 GGAACCGGTTGTAGCGAATTC 59.604 52.381 27.87 5.72 42.41 2.17
157 158 1.270947 TGGAACCGGTTGTAGCGAATT 60.271 47.619 27.87 0.00 42.41 2.17
158 159 0.322322 TGGAACCGGTTGTAGCGAAT 59.678 50.000 27.87 0.00 42.41 3.34
159 160 0.320073 CTGGAACCGGTTGTAGCGAA 60.320 55.000 27.87 1.13 42.41 4.70
160 161 1.290955 CTGGAACCGGTTGTAGCGA 59.709 57.895 27.87 6.41 42.41 4.93
161 162 2.388232 GCTGGAACCGGTTGTAGCG 61.388 63.158 27.87 9.33 39.06 4.26
162 163 0.887387 TTGCTGGAACCGGTTGTAGC 60.887 55.000 31.08 31.08 0.00 3.58
163 164 1.600023 TTTGCTGGAACCGGTTGTAG 58.400 50.000 27.87 22.10 0.00 2.74
164 165 2.054232 TTTTGCTGGAACCGGTTGTA 57.946 45.000 27.87 12.33 0.00 2.41
165 166 1.187087 TTTTTGCTGGAACCGGTTGT 58.813 45.000 27.87 0.00 0.00 3.32
166 167 2.524569 ATTTTTGCTGGAACCGGTTG 57.475 45.000 27.87 12.07 0.00 3.77
167 168 2.432510 TGAATTTTTGCTGGAACCGGTT 59.567 40.909 22.50 22.50 0.00 4.44
168 169 2.035632 TGAATTTTTGCTGGAACCGGT 58.964 42.857 0.00 0.00 0.00 5.28
169 170 2.403259 GTGAATTTTTGCTGGAACCGG 58.597 47.619 0.00 0.00 0.00 5.28
170 171 2.403259 GGTGAATTTTTGCTGGAACCG 58.597 47.619 0.00 0.00 0.00 4.44
171 172 2.223947 ACGGTGAATTTTTGCTGGAACC 60.224 45.455 0.00 0.00 0.00 3.62
172 173 2.794350 CACGGTGAATTTTTGCTGGAAC 59.206 45.455 0.74 0.00 0.00 3.62
173 174 2.690497 TCACGGTGAATTTTTGCTGGAA 59.310 40.909 8.68 0.00 0.00 3.53
174 175 2.293122 CTCACGGTGAATTTTTGCTGGA 59.707 45.455 12.54 0.00 0.00 3.86
175 176 2.607771 CCTCACGGTGAATTTTTGCTGG 60.608 50.000 12.54 2.75 0.00 4.85
176 177 2.607771 CCCTCACGGTGAATTTTTGCTG 60.608 50.000 12.54 0.00 0.00 4.41
177 178 1.613437 CCCTCACGGTGAATTTTTGCT 59.387 47.619 12.54 0.00 0.00 3.91
178 179 1.336795 CCCCTCACGGTGAATTTTTGC 60.337 52.381 12.54 0.00 0.00 3.68
179 180 1.960689 ACCCCTCACGGTGAATTTTTG 59.039 47.619 12.54 0.00 33.77 2.44
180 181 2.375014 ACCCCTCACGGTGAATTTTT 57.625 45.000 12.54 0.00 33.77 1.94
181 182 2.374170 ACTACCCCTCACGGTGAATTTT 59.626 45.455 12.54 0.23 36.56 1.82
182 183 1.982958 ACTACCCCTCACGGTGAATTT 59.017 47.619 12.54 0.00 36.56 1.82
183 184 1.553704 GACTACCCCTCACGGTGAATT 59.446 52.381 12.54 0.00 36.56 2.17
184 185 1.192428 GACTACCCCTCACGGTGAAT 58.808 55.000 12.54 1.16 36.56 2.57
185 186 0.113776 AGACTACCCCTCACGGTGAA 59.886 55.000 12.54 0.00 36.56 3.18
186 187 0.611062 CAGACTACCCCTCACGGTGA 60.611 60.000 10.88 10.88 36.56 4.02
187 188 1.890894 CAGACTACCCCTCACGGTG 59.109 63.158 0.56 0.56 36.56 4.94
188 189 1.982938 GCAGACTACCCCTCACGGT 60.983 63.158 0.00 0.00 40.13 4.83
189 190 2.722201 GGCAGACTACCCCTCACGG 61.722 68.421 0.00 0.00 0.00 4.94
190 191 1.330655 ATGGCAGACTACCCCTCACG 61.331 60.000 0.00 0.00 0.00 4.35
191 192 0.179000 CATGGCAGACTACCCCTCAC 59.821 60.000 0.00 0.00 0.00 3.51
192 193 0.982852 CCATGGCAGACTACCCCTCA 60.983 60.000 0.00 0.00 0.00 3.86
193 194 1.832912 CCATGGCAGACTACCCCTC 59.167 63.158 0.00 0.00 0.00 4.30
194 195 2.378634 GCCATGGCAGACTACCCCT 61.379 63.158 32.08 0.00 41.49 4.79
195 196 2.193248 GCCATGGCAGACTACCCC 59.807 66.667 32.08 0.00 41.49 4.95
196 197 1.153086 CAGCCATGGCAGACTACCC 60.153 63.158 37.18 5.77 44.88 3.69
197 198 1.153086 CCAGCCATGGCAGACTACC 60.153 63.158 37.18 6.56 44.88 3.18
198 199 4.547859 CCAGCCATGGCAGACTAC 57.452 61.111 37.18 7.37 44.88 2.73
233 234 3.207669 CTACCTCGTCGGACCCGG 61.208 72.222 8.73 5.74 40.25 5.73
234 235 3.207669 CCTACCTCGTCGGACCCG 61.208 72.222 1.91 1.31 41.35 5.28
235 236 3.525545 GCCTACCTCGTCGGACCC 61.526 72.222 1.91 0.00 36.31 4.46
236 237 2.753043 TGCCTACCTCGTCGGACC 60.753 66.667 1.91 0.00 36.31 4.46
237 238 1.716826 CTCTGCCTACCTCGTCGGAC 61.717 65.000 0.00 0.00 36.31 4.79
238 239 1.451567 CTCTGCCTACCTCGTCGGA 60.452 63.158 0.00 0.00 36.31 4.55
239 240 3.111939 CTCTGCCTACCTCGTCGG 58.888 66.667 0.00 0.00 39.35 4.79
240 241 2.054140 GAGCTCTGCCTACCTCGTCG 62.054 65.000 6.43 0.00 0.00 5.12
241 242 1.730451 GGAGCTCTGCCTACCTCGTC 61.730 65.000 14.64 0.00 0.00 4.20
242 243 1.755008 GGAGCTCTGCCTACCTCGT 60.755 63.158 14.64 0.00 0.00 4.18
243 244 2.840066 CGGAGCTCTGCCTACCTCG 61.840 68.421 14.64 0.96 0.00 4.63
244 245 0.825840 ATCGGAGCTCTGCCTACCTC 60.826 60.000 18.28 0.00 0.00 3.85
245 246 1.112315 CATCGGAGCTCTGCCTACCT 61.112 60.000 18.28 0.00 0.00 3.08
246 247 1.365633 CATCGGAGCTCTGCCTACC 59.634 63.158 18.28 0.00 0.00 3.18
247 248 1.300542 GCATCGGAGCTCTGCCTAC 60.301 63.158 18.28 3.45 0.00 3.18
248 249 1.117749 ATGCATCGGAGCTCTGCCTA 61.118 55.000 18.28 0.75 35.02 3.93
249 250 2.441675 ATGCATCGGAGCTCTGCCT 61.442 57.895 18.28 7.98 35.02 4.75
250 251 2.110627 ATGCATCGGAGCTCTGCC 59.889 61.111 18.28 8.95 35.02 4.85
251 252 2.894565 GCATGCATCGGAGCTCTGC 61.895 63.158 18.28 17.65 36.96 4.26
252 253 2.595878 CGCATGCATCGGAGCTCTG 61.596 63.158 19.57 16.98 34.99 3.35
253 254 2.279985 CGCATGCATCGGAGCTCT 60.280 61.111 19.57 0.00 34.99 4.09
254 255 2.279717 TCGCATGCATCGGAGCTC 60.280 61.111 19.57 4.71 34.99 4.09
255 256 2.279985 CTCGCATGCATCGGAGCT 60.280 61.111 19.57 0.00 34.99 4.09
256 257 3.344215 CCTCGCATGCATCGGAGC 61.344 66.667 19.57 7.23 0.00 4.70
257 258 1.220169 CTTCCTCGCATGCATCGGAG 61.220 60.000 19.57 15.19 0.00 4.63
258 259 1.227350 CTTCCTCGCATGCATCGGA 60.227 57.895 19.57 16.20 0.00 4.55
259 260 2.249535 CCTTCCTCGCATGCATCGG 61.250 63.158 19.57 14.07 0.00 4.18
260 261 2.890109 GCCTTCCTCGCATGCATCG 61.890 63.158 19.57 4.09 0.00 3.84
261 262 2.890109 CGCCTTCCTCGCATGCATC 61.890 63.158 19.57 0.00 0.00 3.91
262 263 2.898840 CGCCTTCCTCGCATGCAT 60.899 61.111 19.57 0.00 0.00 3.96
263 264 4.393155 ACGCCTTCCTCGCATGCA 62.393 61.111 19.57 4.02 0.00 3.96
264 265 3.567797 GACGCCTTCCTCGCATGC 61.568 66.667 7.91 7.91 0.00 4.06
265 266 3.257561 CGACGCCTTCCTCGCATG 61.258 66.667 0.00 0.00 0.00 4.06
285 286 2.186125 GCTACGGGGTGCTACCAC 59.814 66.667 7.49 3.03 41.02 4.16
286 287 2.284039 TGCTACGGGGTGCTACCA 60.284 61.111 7.49 0.00 41.02 3.25
287 288 2.186125 GTGCTACGGGGTGCTACC 59.814 66.667 0.00 0.00 37.60 3.18
288 289 1.153628 CAGTGCTACGGGGTGCTAC 60.154 63.158 0.00 0.00 0.00 3.58
289 290 2.355986 CCAGTGCTACGGGGTGCTA 61.356 63.158 0.00 0.00 29.33 3.49
290 291 3.706373 CCAGTGCTACGGGGTGCT 61.706 66.667 0.00 0.00 29.33 4.40
291 292 3.546714 AACCAGTGCTACGGGGTGC 62.547 63.158 9.46 0.00 37.79 5.01
292 293 1.671054 CAACCAGTGCTACGGGGTG 60.671 63.158 8.54 8.54 44.25 4.61
293 294 2.747686 CAACCAGTGCTACGGGGT 59.252 61.111 9.46 1.30 37.79 4.95
302 303 1.310933 GGGAGATGCTGCAACCAGTG 61.311 60.000 6.36 0.00 41.26 3.66
303 304 1.001641 GGGAGATGCTGCAACCAGT 60.002 57.895 6.36 0.00 41.26 4.00
304 305 2.110967 CGGGAGATGCTGCAACCAG 61.111 63.158 6.36 7.93 42.13 4.00
305 306 2.046023 CGGGAGATGCTGCAACCA 60.046 61.111 6.36 0.00 0.00 3.67
306 307 1.675641 AACGGGAGATGCTGCAACC 60.676 57.895 6.36 10.66 0.00 3.77
307 308 1.237285 ACAACGGGAGATGCTGCAAC 61.237 55.000 6.36 3.53 35.89 4.17
308 309 0.955428 GACAACGGGAGATGCTGCAA 60.955 55.000 6.36 0.00 35.89 4.08
309 310 1.375908 GACAACGGGAGATGCTGCA 60.376 57.895 4.13 4.13 35.89 4.41
310 311 1.375908 TGACAACGGGAGATGCTGC 60.376 57.895 0.00 0.00 35.89 5.25
1016 1017 2.925162 GATCGAACGGGGAAGGCTGG 62.925 65.000 0.00 0.00 0.00 4.85
1435 1436 5.261216 CAACCCTTAATCACCTGTAATGGT 58.739 41.667 0.00 0.00 41.77 3.55
1454 1455 1.734465 CTTCTTCTCGGTGATGCAACC 59.266 52.381 0.00 0.00 36.82 3.77
1549 1550 1.134280 GCTCTCTTGGCAGCCAATAGA 60.134 52.381 30.66 30.66 43.07 1.98
1570 1571 2.041115 TGACTCTGTCTCCTCCGCG 61.041 63.158 0.00 0.00 33.15 6.46
1663 1664 3.451526 CGATTGCTGAGCTGAGTTATCA 58.548 45.455 5.83 0.00 0.00 2.15
1669 1670 0.459759 TCTGCGATTGCTGAGCTGAG 60.460 55.000 10.29 0.00 43.17 3.35
1677 1678 3.359194 CAGCTAGTCTGCGATTGCT 57.641 52.632 6.47 0.00 43.34 3.91
1708 1709 5.073554 ACCAGATTTATCATCCATGGCACTA 59.926 40.000 6.96 0.00 0.00 2.74
1782 1783 1.280133 TCTTCCTGACATGGGAGCTTG 59.720 52.381 0.00 0.00 32.69 4.01
2014 2015 3.056080 AGAAGCCATAGCCTTCCCAATA 58.944 45.455 0.00 0.00 41.25 1.90
2203 2204 1.163554 CAGAAGGGAGCTCTGCAAAC 58.836 55.000 14.64 0.00 34.32 2.93
2352 2353 3.877559 CCAGCTAATTGTGTGATCTCCA 58.122 45.455 0.00 0.00 0.00 3.86
2403 2404 7.600375 TGTTATCACTCTCATTTTCACTCTCAC 59.400 37.037 0.00 0.00 0.00 3.51
2410 2411 7.884877 ACCTCATTGTTATCACTCTCATTTTCA 59.115 33.333 0.00 0.00 0.00 2.69
4144 4158 4.017222 TCCATGAATCCATTTCCAGAACCT 60.017 41.667 0.00 0.00 33.04 3.50
4145 4159 4.280819 TCCATGAATCCATTTCCAGAACC 58.719 43.478 0.00 0.00 33.04 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.