Multiple sequence alignment - TraesCS2D01G345800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G345800 chr2D 100.000 6397 0 0 1 6397 441767106 441760710 0.000000e+00 11814
1 TraesCS2D01G345800 chr2D 92.593 162 12 0 750 911 32474471 32474310 3.860000e-57 233
2 TraesCS2D01G345800 chr2D 91.579 95 8 0 5107 5201 462859775 462859869 1.450000e-26 132
3 TraesCS2D01G345800 chr2A 97.694 4206 94 2 915 5120 585660469 585656267 0.000000e+00 7227
4 TraesCS2D01G345800 chr2A 97.255 1202 28 3 5200 6397 585656270 585655070 0.000000e+00 2032
5 TraesCS2D01G345800 chr2A 85.808 761 80 16 4 755 585661227 585660486 0.000000e+00 782
6 TraesCS2D01G345800 chr2A 88.060 134 14 2 4006 4137 718569948 718570081 2.390000e-34 158
7 TraesCS2D01G345800 chr2B 98.347 3993 66 0 1128 5120 521330712 521326720 0.000000e+00 7009
8 TraesCS2D01G345800 chr2B 97.666 557 13 0 5200 5756 521326723 521326167 0.000000e+00 957
9 TraesCS2D01G345800 chr2B 87.483 743 56 21 1 737 521331907 521331196 0.000000e+00 822
10 TraesCS2D01G345800 chr2B 97.034 236 6 1 6018 6252 521322123 521321888 4.650000e-106 396
11 TraesCS2D01G345800 chr2B 97.351 151 4 0 6247 6397 521320044 521319894 2.290000e-64 257
12 TraesCS2D01G345800 chr2B 96.503 143 5 0 5878 6020 521326170 521326028 2.980000e-58 237
13 TraesCS2D01G345800 chr2B 89.080 174 18 1 738 911 200902071 200902243 1.400000e-51 215
14 TraesCS2D01G345800 chr2B 90.244 164 15 1 748 911 769268468 769268630 5.020000e-51 213
15 TraesCS2D01G345800 chr2B 95.833 120 3 2 918 1036 521331200 521331082 6.550000e-45 193
16 TraesCS2D01G345800 chr2B 90.816 98 9 0 5114 5211 240186234 240186331 1.450000e-26 132
17 TraesCS2D01G345800 chr5B 82.709 347 51 7 4006 4345 272000168 272000512 3.750000e-77 300
18 TraesCS2D01G345800 chr5B 91.772 158 13 0 753 910 558893691 558893534 3.000000e-53 220
19 TraesCS2D01G345800 chr5B 87.640 178 21 1 750 927 106957099 106957275 8.410000e-49 206
20 TraesCS2D01G345800 chr7D 90.055 181 14 4 750 928 562185116 562184938 1.390000e-56 231
21 TraesCS2D01G345800 chr1B 90.741 162 14 1 750 911 492367946 492368106 1.400000e-51 215
22 TraesCS2D01G345800 chr5A 89.412 170 17 1 749 918 8174666 8174498 5.020000e-51 213
23 TraesCS2D01G345800 chr7B 94.815 135 7 0 1 135 655427710 655427844 1.810000e-50 211
24 TraesCS2D01G345800 chr7B 94.815 135 7 0 1 135 655434269 655434403 1.810000e-50 211
25 TraesCS2D01G345800 chr7B 88.757 169 19 0 743 911 428838955 428839123 2.340000e-49 207
26 TraesCS2D01G345800 chr7B 81.041 269 39 7 344 610 655427844 655428102 3.020000e-48 204
27 TraesCS2D01G345800 chr7B 80.741 270 40 8 344 610 655434403 655434663 3.910000e-47 200
28 TraesCS2D01G345800 chr6A 93.548 93 5 1 5117 5209 27342895 27342986 3.110000e-28 137
29 TraesCS2D01G345800 chrUn 94.318 88 5 0 5116 5203 163394521 163394434 1.120000e-27 135
30 TraesCS2D01G345800 chrUn 94.318 88 5 0 5116 5203 325472533 325472446 1.120000e-27 135
31 TraesCS2D01G345800 chrUn 94.318 88 5 0 5116 5203 384522783 384522696 1.120000e-27 135
32 TraesCS2D01G345800 chrUn 94.318 88 5 0 5116 5203 386040248 386040335 1.120000e-27 135
33 TraesCS2D01G345800 chrUn 91.667 96 7 1 5107 5201 62690565 62690470 1.450000e-26 132
34 TraesCS2D01G345800 chrUn 91.667 96 7 1 5117 5212 475637857 475637763 1.450000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G345800 chr2D 441760710 441767106 6396 True 11814.000000 11814 100.000000 1 6397 1 chr2D.!!$R2 6396
1 TraesCS2D01G345800 chr2A 585655070 585661227 6157 True 3347.000000 7227 93.585667 4 6397 3 chr2A.!!$R1 6393
2 TraesCS2D01G345800 chr2B 521319894 521331907 12013 True 1410.142857 7009 95.745286 1 6397 7 chr2B.!!$R1 6396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 604 0.251832 AACGGAGGAGAGCAAGAGGA 60.252 55.000 0.00 0.00 0.00 3.71 F
750 758 0.817654 CACCGTCAGAGCCATGACTA 59.182 55.000 14.84 0.00 46.04 2.59 F
751 759 0.818296 ACCGTCAGAGCCATGACTAC 59.182 55.000 14.84 0.00 46.04 2.73 F
752 760 1.107114 CCGTCAGAGCCATGACTACT 58.893 55.000 14.84 0.00 46.04 2.57 F
1057 1066 1.372087 CTCTGCCTCCATTTCCACGC 61.372 60.000 0.00 0.00 0.00 5.34 F
1367 1653 1.374758 CGACTTCGAAGGCAAGGCT 60.375 57.895 29.65 6.87 43.02 4.58 F
2626 2912 1.425066 TCTCATTGAACAAGCCCAGGT 59.575 47.619 0.00 0.00 0.00 4.00 F
3976 4262 0.244994 CAGGAGGTCAGTCCACTTCG 59.755 60.000 0.00 0.00 39.34 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 2352 0.183492 TTCTCTTGCACCAGCCAAGT 59.817 50.000 0.00 0.00 41.13 3.16 R
2213 2499 2.344592 ACATAACCAGGAGGACAACCA 58.655 47.619 0.00 0.00 38.69 3.67 R
2626 2912 5.485620 CACTTCTCATCTCATCAAACCAGA 58.514 41.667 0.00 0.00 0.00 3.86 R
2774 3060 9.271828 CCATCAATTAGTGCACTATATGTAACA 57.728 33.333 26.54 10.09 0.00 2.41 R
3171 3457 1.698506 AGATCACGTCTCCCATCCTC 58.301 55.000 0.00 0.00 28.45 3.71 R
3482 3768 0.313043 CCAAAAGACCAGCAGCACAG 59.687 55.000 0.00 0.00 0.00 3.66 R
4480 4766 2.156917 CTTGGAGCAAAGCATGAGACA 58.843 47.619 0.00 0.00 0.00 3.41 R
5874 6163 1.270305 GCTTCGGATATGGTAGCTGCA 60.270 52.381 3.61 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 7.819415 TGTGACTCAATTTCTAGTTGTCTATGG 59.181 37.037 0.00 0.00 0.00 2.74
138 141 8.915654 GGAACATTGTCACAAGAAAATATGTTC 58.084 33.333 17.18 17.18 38.79 3.18
156 159 1.655484 TCACATACATTCTGCAGCCG 58.345 50.000 9.47 1.78 0.00 5.52
233 236 1.078426 AGCGCACACTATCCCCAAC 60.078 57.895 11.47 0.00 0.00 3.77
263 269 3.074412 CTGGCAAAAGGAACTATCACGT 58.926 45.455 0.00 0.00 38.49 4.49
288 294 1.893801 AGAACTTCCGACGGACAGAAT 59.106 47.619 18.12 11.31 0.00 2.40
289 295 2.094649 AGAACTTCCGACGGACAGAATC 60.095 50.000 18.12 17.77 0.00 2.52
290 296 1.254026 ACTTCCGACGGACAGAATCA 58.746 50.000 18.12 0.00 0.00 2.57
291 297 1.067776 ACTTCCGACGGACAGAATCAC 60.068 52.381 18.12 0.00 0.00 3.06
292 298 0.963225 TTCCGACGGACAGAATCACA 59.037 50.000 18.12 0.00 0.00 3.58
293 299 0.526211 TCCGACGGACAGAATCACAG 59.474 55.000 13.88 0.00 0.00 3.66
294 300 0.526211 CCGACGGACAGAATCACAGA 59.474 55.000 8.64 0.00 0.00 3.41
295 301 1.067846 CCGACGGACAGAATCACAGAA 60.068 52.381 8.64 0.00 0.00 3.02
304 310 6.313658 CGGACAGAATCACAGAACAATGAATA 59.686 38.462 0.00 0.00 0.00 1.75
312 318 7.320443 TCACAGAACAATGAATATGCTAACC 57.680 36.000 0.00 0.00 0.00 2.85
318 324 6.949352 ACAATGAATATGCTAACCCTTGAG 57.051 37.500 0.00 0.00 0.00 3.02
332 338 3.077359 CCCTTGAGTAAAGCCTGTGAAG 58.923 50.000 0.00 0.00 34.24 3.02
357 363 5.233988 CCATATGCCTAACAGTAAGAGCTC 58.766 45.833 5.27 5.27 0.00 4.09
358 364 2.941453 TGCCTAACAGTAAGAGCTCG 57.059 50.000 8.37 0.00 0.00 5.03
359 365 2.168496 TGCCTAACAGTAAGAGCTCGT 58.832 47.619 8.37 7.90 0.00 4.18
361 367 3.952323 TGCCTAACAGTAAGAGCTCGTAT 59.048 43.478 12.62 3.93 0.00 3.06
362 368 4.036498 TGCCTAACAGTAAGAGCTCGTATC 59.964 45.833 12.62 6.86 0.00 2.24
363 369 4.036498 GCCTAACAGTAAGAGCTCGTATCA 59.964 45.833 12.62 0.00 0.00 2.15
366 372 7.203910 CCTAACAGTAAGAGCTCGTATCAAAT 58.796 38.462 12.62 2.27 0.00 2.32
367 373 6.893958 AACAGTAAGAGCTCGTATCAAATG 57.106 37.500 12.62 4.53 0.00 2.32
369 375 6.037098 ACAGTAAGAGCTCGTATCAAATGAC 58.963 40.000 12.62 0.00 0.00 3.06
370 376 6.036470 CAGTAAGAGCTCGTATCAAATGACA 58.964 40.000 12.62 0.00 0.00 3.58
371 377 6.531594 CAGTAAGAGCTCGTATCAAATGACAA 59.468 38.462 12.62 0.00 0.00 3.18
372 378 7.063426 CAGTAAGAGCTCGTATCAAATGACAAA 59.937 37.037 12.62 0.00 0.00 2.83
373 379 6.414408 AAGAGCTCGTATCAAATGACAAAG 57.586 37.500 8.37 0.00 0.00 2.77
374 380 5.482908 AGAGCTCGTATCAAATGACAAAGT 58.517 37.500 8.37 0.00 0.00 2.66
408 414 2.309755 TGCCTCTGGGATGAAGTTCAAT 59.690 45.455 10.14 0.00 33.58 2.57
421 427 0.723981 GTTCAATCTCACCTGCGCTC 59.276 55.000 9.73 0.00 0.00 5.03
504 510 3.073274 ACCACCTAGGAAATCAAGTGC 57.927 47.619 17.98 0.00 41.22 4.40
542 548 1.672881 GACAATTCGCTCCCCAGATTG 59.327 52.381 0.00 0.00 0.00 2.67
543 549 1.027357 CAATTCGCTCCCCAGATTGG 58.973 55.000 0.00 0.00 37.25 3.16
560 566 4.338327 GGCTTACGGAGGCGTATG 57.662 61.111 0.00 0.00 41.49 2.39
561 567 1.954651 GGCTTACGGAGGCGTATGC 60.955 63.158 4.42 4.42 41.49 3.14
562 568 2.300787 GCTTACGGAGGCGTATGCG 61.301 63.158 0.00 0.00 44.10 4.73
583 589 1.400494 CCGGATTTAGCCAAGAAACGG 59.600 52.381 0.00 0.00 0.00 4.44
585 591 2.351726 CGGATTTAGCCAAGAAACGGAG 59.648 50.000 0.00 0.00 0.00 4.63
590 596 0.610687 AGCCAAGAAACGGAGGAGAG 59.389 55.000 0.00 0.00 0.00 3.20
593 599 1.270839 CCAAGAAACGGAGGAGAGCAA 60.271 52.381 0.00 0.00 0.00 3.91
598 604 0.251832 AACGGAGGAGAGCAAGAGGA 60.252 55.000 0.00 0.00 0.00 3.71
610 616 6.094186 GGAGAGCAAGAGGAAACGAATTAATT 59.906 38.462 0.00 0.00 0.00 1.40
611 617 7.280205 GGAGAGCAAGAGGAAACGAATTAATTA 59.720 37.037 0.00 0.00 0.00 1.40
613 619 8.451748 AGAGCAAGAGGAAACGAATTAATTAAC 58.548 33.333 0.00 0.00 0.00 2.01
614 620 7.241376 AGCAAGAGGAAACGAATTAATTAACG 58.759 34.615 0.00 4.28 0.00 3.18
615 621 6.468000 GCAAGAGGAAACGAATTAATTAACGG 59.532 38.462 12.31 2.86 0.00 4.44
616 622 6.673154 AGAGGAAACGAATTAATTAACGGG 57.327 37.500 12.31 2.57 0.00 5.28
617 623 6.408869 AGAGGAAACGAATTAATTAACGGGA 58.591 36.000 12.31 0.00 0.00 5.14
618 624 6.880529 AGAGGAAACGAATTAATTAACGGGAA 59.119 34.615 12.31 0.00 0.00 3.97
628 634 6.557291 TTAATTAACGGGAAAAGAAGCGAA 57.443 33.333 0.00 0.00 0.00 4.70
630 636 2.249844 AACGGGAAAAGAAGCGAAGA 57.750 45.000 0.00 0.00 0.00 2.87
631 637 2.249844 ACGGGAAAAGAAGCGAAGAA 57.750 45.000 0.00 0.00 0.00 2.52
713 720 2.347490 GGGCTGCGACTTTCTCCA 59.653 61.111 0.00 0.00 0.00 3.86
722 729 2.868044 GCGACTTTCTCCATCTGTGTGT 60.868 50.000 0.00 0.00 0.00 3.72
724 731 3.305676 CGACTTTCTCCATCTGTGTGTCT 60.306 47.826 0.00 0.00 0.00 3.41
748 756 1.448540 CCACCGTCAGAGCCATGAC 60.449 63.158 8.50 8.50 45.01 3.06
749 757 1.593787 CACCGTCAGAGCCATGACT 59.406 57.895 14.84 0.00 46.04 3.41
750 758 0.817654 CACCGTCAGAGCCATGACTA 59.182 55.000 14.84 0.00 46.04 2.59
751 759 0.818296 ACCGTCAGAGCCATGACTAC 59.182 55.000 14.84 0.00 46.04 2.73
752 760 1.107114 CCGTCAGAGCCATGACTACT 58.893 55.000 14.84 0.00 46.04 2.57
753 761 2.298610 CCGTCAGAGCCATGACTACTA 58.701 52.381 14.84 0.00 46.04 1.82
754 762 2.033550 CCGTCAGAGCCATGACTACTAC 59.966 54.545 14.84 0.00 46.04 2.73
755 763 2.946329 CGTCAGAGCCATGACTACTACT 59.054 50.000 14.84 0.00 46.04 2.57
756 764 3.002862 CGTCAGAGCCATGACTACTACTC 59.997 52.174 14.84 0.00 46.04 2.59
757 765 3.316868 GTCAGAGCCATGACTACTACTCC 59.683 52.174 10.80 0.00 45.03 3.85
758 766 2.625790 CAGAGCCATGACTACTACTCCC 59.374 54.545 0.00 0.00 0.00 4.30
759 767 2.516277 AGAGCCATGACTACTACTCCCT 59.484 50.000 0.00 0.00 0.00 4.20
760 768 2.888414 GAGCCATGACTACTACTCCCTC 59.112 54.545 0.00 0.00 0.00 4.30
761 769 1.964933 GCCATGACTACTACTCCCTCC 59.035 57.143 0.00 0.00 0.00 4.30
762 770 2.231529 CCATGACTACTACTCCCTCCG 58.768 57.143 0.00 0.00 0.00 4.63
764 772 3.288964 CATGACTACTACTCCCTCCGTT 58.711 50.000 0.00 0.00 0.00 4.44
765 773 2.996631 TGACTACTACTCCCTCCGTTC 58.003 52.381 0.00 0.00 0.00 3.95
766 774 2.296792 GACTACTACTCCCTCCGTTCC 58.703 57.143 0.00 0.00 0.00 3.62
769 777 3.525199 ACTACTACTCCCTCCGTTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
771 779 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
772 780 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
773 781 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
774 782 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
775 783 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
776 784 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
777 785 5.427481 ACTCCCTCCGTTCCTAAATATTTGA 59.573 40.000 11.05 0.00 0.00 2.69
778 786 6.101296 ACTCCCTCCGTTCCTAAATATTTGAT 59.899 38.462 11.05 0.00 0.00 2.57
779 787 6.906848 TCCCTCCGTTCCTAAATATTTGATT 58.093 36.000 11.05 0.00 0.00 2.57
780 788 7.351166 TCCCTCCGTTCCTAAATATTTGATTT 58.649 34.615 11.05 0.00 0.00 2.17
781 789 7.837187 TCCCTCCGTTCCTAAATATTTGATTTT 59.163 33.333 11.05 0.00 0.00 1.82
782 790 8.135529 CCCTCCGTTCCTAAATATTTGATTTTC 58.864 37.037 11.05 0.00 0.00 2.29
783 791 8.903820 CCTCCGTTCCTAAATATTTGATTTTCT 58.096 33.333 11.05 0.00 0.00 2.52
800 808 9.825972 TTGATTTTCTAGACATTTCAAATCGAC 57.174 29.630 15.52 0.89 34.65 4.20
801 809 9.219603 TGATTTTCTAGACATTTCAAATCGACT 57.780 29.630 15.52 0.00 34.65 4.18
811 819 9.779237 GACATTTCAAATCGACTATAACATACG 57.221 33.333 0.00 0.00 0.00 3.06
812 820 9.524106 ACATTTCAAATCGACTATAACATACGA 57.476 29.630 0.00 0.00 37.39 3.43
855 863 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
856 864 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
857 865 7.516198 AAGTGTAGATTCACTCATTTTGCTT 57.484 32.000 0.00 0.00 46.25 3.91
858 866 7.516198 AGTGTAGATTCACTCATTTTGCTTT 57.484 32.000 0.00 0.00 44.07 3.51
859 867 7.365741 AGTGTAGATTCACTCATTTTGCTTTG 58.634 34.615 0.00 0.00 44.07 2.77
860 868 7.013655 AGTGTAGATTCACTCATTTTGCTTTGT 59.986 33.333 0.00 0.00 44.07 2.83
861 869 8.289618 GTGTAGATTCACTCATTTTGCTTTGTA 58.710 33.333 0.00 0.00 35.68 2.41
862 870 8.845227 TGTAGATTCACTCATTTTGCTTTGTAA 58.155 29.630 0.00 0.00 0.00 2.41
863 871 9.334693 GTAGATTCACTCATTTTGCTTTGTAAG 57.665 33.333 0.00 0.00 0.00 2.34
864 872 7.945134 AGATTCACTCATTTTGCTTTGTAAGT 58.055 30.769 0.00 0.00 0.00 2.24
865 873 9.066892 AGATTCACTCATTTTGCTTTGTAAGTA 57.933 29.630 0.00 0.00 0.00 2.24
866 874 9.334693 GATTCACTCATTTTGCTTTGTAAGTAG 57.665 33.333 0.00 0.00 0.00 2.57
867 875 7.801716 TCACTCATTTTGCTTTGTAAGTAGT 57.198 32.000 0.00 0.00 0.00 2.73
868 876 7.861630 TCACTCATTTTGCTTTGTAAGTAGTC 58.138 34.615 0.00 0.00 0.00 2.59
869 877 7.497579 TCACTCATTTTGCTTTGTAAGTAGTCA 59.502 33.333 0.00 0.00 0.00 3.41
870 878 8.292448 CACTCATTTTGCTTTGTAAGTAGTCAT 58.708 33.333 0.00 0.00 0.00 3.06
871 879 8.850156 ACTCATTTTGCTTTGTAAGTAGTCATT 58.150 29.630 0.00 0.00 0.00 2.57
872 880 9.334693 CTCATTTTGCTTTGTAAGTAGTCATTC 57.665 33.333 0.00 0.00 0.00 2.67
873 881 8.015087 TCATTTTGCTTTGTAAGTAGTCATTCG 58.985 33.333 0.00 0.00 0.00 3.34
874 882 6.854496 TTTGCTTTGTAAGTAGTCATTCGT 57.146 33.333 0.00 0.00 0.00 3.85
875 883 6.854496 TTGCTTTGTAAGTAGTCATTCGTT 57.146 33.333 0.00 0.00 0.00 3.85
876 884 6.223138 TGCTTTGTAAGTAGTCATTCGTTG 57.777 37.500 0.00 0.00 0.00 4.10
877 885 5.986741 TGCTTTGTAAGTAGTCATTCGTTGA 59.013 36.000 0.00 0.00 0.00 3.18
878 886 6.480651 TGCTTTGTAAGTAGTCATTCGTTGAA 59.519 34.615 0.00 0.00 35.70 2.69
879 887 7.011576 TGCTTTGTAAGTAGTCATTCGTTGAAA 59.988 33.333 0.00 0.00 35.70 2.69
880 888 8.015658 GCTTTGTAAGTAGTCATTCGTTGAAAT 58.984 33.333 0.00 0.00 35.70 2.17
881 889 9.878599 CTTTGTAAGTAGTCATTCGTTGAAATT 57.121 29.630 0.00 0.00 35.70 1.82
887 895 8.786826 AGTAGTCATTCGTTGAAATTTATGGA 57.213 30.769 0.00 0.00 35.70 3.41
888 896 9.226606 AGTAGTCATTCGTTGAAATTTATGGAA 57.773 29.630 0.00 0.00 35.70 3.53
889 897 9.834628 GTAGTCATTCGTTGAAATTTATGGAAA 57.165 29.630 0.00 0.00 35.70 3.13
890 898 8.970691 AGTCATTCGTTGAAATTTATGGAAAG 57.029 30.769 0.00 0.00 35.70 2.62
891 899 8.792633 AGTCATTCGTTGAAATTTATGGAAAGA 58.207 29.630 0.00 0.00 35.70 2.52
892 900 8.850452 GTCATTCGTTGAAATTTATGGAAAGAC 58.150 33.333 10.54 10.54 35.70 3.01
893 901 8.572185 TCATTCGTTGAAATTTATGGAAAGACA 58.428 29.630 0.00 0.00 0.00 3.41
894 902 9.190858 CATTCGTTGAAATTTATGGAAAGACAA 57.809 29.630 0.00 0.00 0.00 3.18
895 903 9.757227 ATTCGTTGAAATTTATGGAAAGACAAA 57.243 25.926 0.00 0.00 0.00 2.83
896 904 9.757227 TTCGTTGAAATTTATGGAAAGACAAAT 57.243 25.926 0.00 0.00 0.00 2.32
908 916 6.915349 TGGAAAGACAAATATTTGGTAACGG 58.085 36.000 27.43 5.66 42.34 4.44
909 917 6.715718 TGGAAAGACAAATATTTGGTAACGGA 59.284 34.615 27.43 7.98 42.34 4.69
910 918 7.094549 TGGAAAGACAAATATTTGGTAACGGAG 60.095 37.037 27.43 4.34 42.34 4.63
911 919 7.094506 GGAAAGACAAATATTTGGTAACGGAGT 60.095 37.037 27.43 7.38 42.96 3.85
912 920 8.851541 AAAGACAAATATTTGGTAACGGAGTA 57.148 30.769 27.43 0.00 41.02 2.59
913 921 8.488651 AAGACAAATATTTGGTAACGGAGTAG 57.511 34.615 27.43 3.04 41.02 2.57
1057 1066 1.372087 CTCTGCCTCCATTTCCACGC 61.372 60.000 0.00 0.00 0.00 5.34
1251 1537 3.462678 GCCTCTCCCTCCACGACC 61.463 72.222 0.00 0.00 0.00 4.79
1265 1551 1.859080 CACGACCTCGCCTTTATTAGC 59.141 52.381 0.00 0.00 44.43 3.09
1367 1653 1.374758 CGACTTCGAAGGCAAGGCT 60.375 57.895 29.65 6.87 43.02 4.58
1457 1743 2.997315 TCCCCGGAGCTCTGTGTG 60.997 66.667 21.06 9.05 0.00 3.82
1538 1824 3.382832 CTCGCCGAGGTCTTGGGT 61.383 66.667 6.13 0.00 34.60 4.51
1556 1842 3.215597 TTTCGAAGACCGCGCCAGA 62.216 57.895 0.00 0.00 34.32 3.86
1712 1998 1.740296 CTTTGGGTACAGGCCGTCG 60.740 63.158 0.00 0.00 0.00 5.12
2626 2912 1.425066 TCTCATTGAACAAGCCCAGGT 59.575 47.619 0.00 0.00 0.00 4.00
2774 3060 4.174704 TGATTCCTGCTATCCAAATGCT 57.825 40.909 0.00 0.00 0.00 3.79
3171 3457 1.665679 CCTTGATTGACCGGATGTTCG 59.334 52.381 9.46 0.00 0.00 3.95
3482 3768 8.840321 ACATACAGAATACTGATAAACCATTGC 58.160 33.333 0.00 0.00 46.03 3.56
3976 4262 0.244994 CAGGAGGTCAGTCCACTTCG 59.755 60.000 0.00 0.00 39.34 3.79
4480 4766 3.829601 CCCCTAAGAAGTCGCATCTCTAT 59.170 47.826 0.00 0.00 0.00 1.98
4497 4783 3.801698 TCTATGTCTCATGCTTTGCTCC 58.198 45.455 0.00 0.00 0.00 4.70
4652 4938 3.102985 CTGCTGCTGCTGCTGATC 58.897 61.111 27.67 9.30 40.01 2.92
4756 5042 7.483059 GTCAGCAGAACTTTATTTGTCAATAGC 59.517 37.037 0.00 0.00 0.00 2.97
5046 5332 5.392380 GGTGGTGAAGATAGCATGAAAGTTG 60.392 44.000 0.00 0.00 0.00 3.16
5122 5408 8.416329 ACAATTGCTTTGATATGATTTACTCCC 58.584 33.333 5.05 0.00 38.76 4.30
5123 5409 8.636213 CAATTGCTTTGATATGATTTACTCCCT 58.364 33.333 0.00 0.00 37.53 4.20
5124 5410 7.807977 TTGCTTTGATATGATTTACTCCCTC 57.192 36.000 0.00 0.00 0.00 4.30
5125 5411 6.299141 TGCTTTGATATGATTTACTCCCTCC 58.701 40.000 0.00 0.00 0.00 4.30
5126 5412 5.409826 GCTTTGATATGATTTACTCCCTCCG 59.590 44.000 0.00 0.00 0.00 4.63
5127 5413 6.494666 TTTGATATGATTTACTCCCTCCGT 57.505 37.500 0.00 0.00 0.00 4.69
5128 5414 5.723672 TGATATGATTTACTCCCTCCGTC 57.276 43.478 0.00 0.00 0.00 4.79
5129 5415 4.527038 TGATATGATTTACTCCCTCCGTCC 59.473 45.833 0.00 0.00 0.00 4.79
5130 5416 1.492764 TGATTTACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
5131 5417 1.273381 TGATTTACTCCCTCCGTCCCA 60.273 52.381 0.00 0.00 0.00 4.37
5132 5418 2.047830 GATTTACTCCCTCCGTCCCAT 58.952 52.381 0.00 0.00 0.00 4.00
5133 5419 2.852714 TTTACTCCCTCCGTCCCATA 57.147 50.000 0.00 0.00 0.00 2.74
5134 5420 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
5135 5421 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
5136 5422 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
5137 5423 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
5138 5424 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
5139 5425 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
5140 5426 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
5141 5427 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
5142 5428 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
5144 5430 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
5145 5431 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
5146 5432 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
5147 5433 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
5148 5434 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
5174 5460 3.123804 ACTGCACTAGTGTCAAAAGACG 58.876 45.455 23.44 11.15 38.49 4.18
5175 5461 3.123804 CTGCACTAGTGTCAAAAGACGT 58.876 45.455 23.44 0.00 0.00 4.34
5176 5462 3.120792 TGCACTAGTGTCAAAAGACGTC 58.879 45.455 23.44 7.70 0.00 4.34
5177 5463 3.181479 TGCACTAGTGTCAAAAGACGTCT 60.181 43.478 23.44 13.58 0.00 4.18
5178 5464 3.802685 GCACTAGTGTCAAAAGACGTCTT 59.197 43.478 24.93 24.93 37.91 3.01
5179 5465 4.980434 GCACTAGTGTCAAAAGACGTCTTA 59.020 41.667 29.91 13.09 34.61 2.10
5180 5466 5.634020 GCACTAGTGTCAAAAGACGTCTTAT 59.366 40.000 29.91 17.27 34.61 1.73
5181 5467 6.805271 GCACTAGTGTCAAAAGACGTCTTATA 59.195 38.462 29.91 15.81 34.61 0.98
5182 5468 7.488471 GCACTAGTGTCAAAAGACGTCTTATAT 59.512 37.037 29.91 16.77 34.61 0.86
5183 5469 9.355215 CACTAGTGTCAAAAGACGTCTTATATT 57.645 33.333 29.91 18.24 34.61 1.28
5187 5473 9.314321 AGTGTCAAAAGACGTCTTATATTATGG 57.686 33.333 29.91 11.93 34.61 2.74
5188 5474 8.548721 GTGTCAAAAGACGTCTTATATTATGGG 58.451 37.037 29.91 9.91 34.61 4.00
5189 5475 8.479689 TGTCAAAAGACGTCTTATATTATGGGA 58.520 33.333 29.91 11.86 34.61 4.37
5190 5476 9.321562 GTCAAAAGACGTCTTATATTATGGGAA 57.678 33.333 29.91 5.81 34.61 3.97
5191 5477 9.542462 TCAAAAGACGTCTTATATTATGGGAAG 57.458 33.333 29.91 8.31 34.61 3.46
5192 5478 8.774586 CAAAAGACGTCTTATATTATGGGAAGG 58.225 37.037 29.91 4.28 34.61 3.46
5193 5479 7.850935 AAGACGTCTTATATTATGGGAAGGA 57.149 36.000 28.80 0.00 33.79 3.36
5194 5480 7.469537 AGACGTCTTATATTATGGGAAGGAG 57.530 40.000 13.58 0.00 0.00 3.69
5195 5481 6.437793 AGACGTCTTATATTATGGGAAGGAGG 59.562 42.308 13.58 0.00 0.00 4.30
5196 5482 6.082707 ACGTCTTATATTATGGGAAGGAGGT 58.917 40.000 0.00 0.00 0.00 3.85
5197 5483 7.243824 ACGTCTTATATTATGGGAAGGAGGTA 58.756 38.462 0.00 0.00 0.00 3.08
5198 5484 7.396623 ACGTCTTATATTATGGGAAGGAGGTAG 59.603 40.741 0.00 0.00 0.00 3.18
5306 5592 9.362151 TCAAATATCTTTCACCCTTTTGTTACT 57.638 29.630 0.00 0.00 0.00 2.24
5313 5599 3.052793 TCACCCTTTTGTTACTGGGGAAA 60.053 43.478 3.15 0.00 43.72 3.13
5521 5807 7.647715 CCTGTTTCATTTGTTTTCGTATGAAGT 59.352 33.333 0.00 0.00 38.02 3.01
5641 5927 2.087646 GAACTCTGGGAACTTGGCATC 58.912 52.381 0.00 0.00 0.00 3.91
5723 6012 4.694509 GGCATATTCTATGTCAGGAAGCAG 59.305 45.833 0.00 0.00 0.00 4.24
5752 6041 1.410517 TGACGGCTCAAAATTTGCCAA 59.589 42.857 15.92 1.33 46.39 4.52
5753 6042 2.061028 GACGGCTCAAAATTTGCCAAG 58.939 47.619 15.92 5.46 46.39 3.61
5754 6043 0.792031 CGGCTCAAAATTTGCCAAGC 59.208 50.000 15.92 8.76 46.39 4.01
5755 6044 1.606224 CGGCTCAAAATTTGCCAAGCT 60.606 47.619 15.92 0.00 46.39 3.74
5756 6045 1.802365 GGCTCAAAATTTGCCAAGCTG 59.198 47.619 14.65 0.00 45.46 4.24
5757 6046 1.196127 GCTCAAAATTTGCCAAGCTGC 59.804 47.619 9.70 0.00 0.00 5.25
5758 6047 2.485903 CTCAAAATTTGCCAAGCTGCA 58.514 42.857 1.02 0.00 40.07 4.41
5759 6048 3.071479 CTCAAAATTTGCCAAGCTGCAT 58.929 40.909 1.02 0.00 41.70 3.96
5760 6049 2.809119 TCAAAATTTGCCAAGCTGCATG 59.191 40.909 1.02 0.00 41.70 4.06
5761 6050 1.816074 AAATTTGCCAAGCTGCATGG 58.184 45.000 18.99 18.99 41.70 3.66
5762 6051 0.688487 AATTTGCCAAGCTGCATGGT 59.312 45.000 23.20 2.47 41.70 3.55
5763 6052 0.688487 ATTTGCCAAGCTGCATGGTT 59.312 45.000 23.20 5.56 41.70 3.67
5764 6053 0.469070 TTTGCCAAGCTGCATGGTTT 59.531 45.000 23.20 0.00 41.70 3.27
5765 6054 0.033781 TTGCCAAGCTGCATGGTTTC 59.966 50.000 23.20 9.06 41.70 2.78
5766 6055 0.828762 TGCCAAGCTGCATGGTTTCT 60.829 50.000 23.20 0.00 40.23 2.52
5767 6056 0.319405 GCCAAGCTGCATGGTTTCTT 59.681 50.000 23.20 0.00 40.23 2.52
5768 6057 1.670967 GCCAAGCTGCATGGTTTCTTC 60.671 52.381 23.20 3.74 40.23 2.87
5769 6058 1.401931 CCAAGCTGCATGGTTTCTTCG 60.402 52.381 15.42 0.00 33.63 3.79
5770 6059 1.536766 CAAGCTGCATGGTTTCTTCGA 59.463 47.619 1.02 0.00 33.63 3.71
5771 6060 1.896220 AGCTGCATGGTTTCTTCGAA 58.104 45.000 1.02 0.00 0.00 3.71
5772 6061 2.440409 AGCTGCATGGTTTCTTCGAAT 58.560 42.857 1.02 0.00 0.00 3.34
5773 6062 2.821969 AGCTGCATGGTTTCTTCGAATT 59.178 40.909 1.02 0.00 0.00 2.17
5774 6063 3.256631 AGCTGCATGGTTTCTTCGAATTT 59.743 39.130 1.02 0.00 0.00 1.82
5775 6064 3.989817 GCTGCATGGTTTCTTCGAATTTT 59.010 39.130 0.00 0.00 0.00 1.82
5776 6065 4.448732 GCTGCATGGTTTCTTCGAATTTTT 59.551 37.500 0.00 0.00 0.00 1.94
5777 6066 5.633182 GCTGCATGGTTTCTTCGAATTTTTA 59.367 36.000 0.00 0.00 0.00 1.52
5778 6067 6.183360 GCTGCATGGTTTCTTCGAATTTTTAG 60.183 38.462 0.00 0.00 0.00 1.85
5779 6068 6.976088 TGCATGGTTTCTTCGAATTTTTAGA 58.024 32.000 0.00 0.00 0.00 2.10
5780 6069 6.861055 TGCATGGTTTCTTCGAATTTTTAGAC 59.139 34.615 0.00 0.00 0.00 2.59
5781 6070 6.861055 GCATGGTTTCTTCGAATTTTTAGACA 59.139 34.615 0.00 0.00 0.00 3.41
5782 6071 7.542130 GCATGGTTTCTTCGAATTTTTAGACAT 59.458 33.333 0.00 0.00 0.00 3.06
5783 6072 9.065871 CATGGTTTCTTCGAATTTTTAGACATC 57.934 33.333 0.00 0.00 0.00 3.06
5784 6073 8.160521 TGGTTTCTTCGAATTTTTAGACATCA 57.839 30.769 0.00 0.00 0.00 3.07
5785 6074 8.625651 TGGTTTCTTCGAATTTTTAGACATCAA 58.374 29.630 0.00 0.00 0.00 2.57
5786 6075 9.458374 GGTTTCTTCGAATTTTTAGACATCAAA 57.542 29.630 0.00 0.00 0.00 2.69
5834 6123 8.743085 ATGACTCAAGCAATATGTTTGTATCT 57.257 30.769 6.79 0.00 39.23 1.98
5835 6124 8.201554 TGACTCAAGCAATATGTTTGTATCTC 57.798 34.615 6.79 0.46 39.23 2.75
5836 6125 8.043113 TGACTCAAGCAATATGTTTGTATCTCT 58.957 33.333 6.79 0.00 39.23 3.10
5837 6126 8.206325 ACTCAAGCAATATGTTTGTATCTCTG 57.794 34.615 6.79 0.00 39.23 3.35
5838 6127 7.019774 TCAAGCAATATGTTTGTATCTCTGC 57.980 36.000 6.79 0.00 39.23 4.26
5839 6128 6.598850 TCAAGCAATATGTTTGTATCTCTGCA 59.401 34.615 6.79 0.00 39.23 4.41
5840 6129 6.369059 AGCAATATGTTTGTATCTCTGCAC 57.631 37.500 0.00 0.00 0.00 4.57
5841 6130 5.882000 AGCAATATGTTTGTATCTCTGCACA 59.118 36.000 0.00 0.00 0.00 4.57
5842 6131 5.967674 GCAATATGTTTGTATCTCTGCACAC 59.032 40.000 0.00 0.00 0.00 3.82
5843 6132 6.489675 CAATATGTTTGTATCTCTGCACACC 58.510 40.000 0.00 0.00 0.00 4.16
5844 6133 3.769739 TGTTTGTATCTCTGCACACCT 57.230 42.857 0.00 0.00 0.00 4.00
5845 6134 4.882842 TGTTTGTATCTCTGCACACCTA 57.117 40.909 0.00 0.00 0.00 3.08
5846 6135 5.420725 TGTTTGTATCTCTGCACACCTAT 57.579 39.130 0.00 0.00 0.00 2.57
5847 6136 6.538945 TGTTTGTATCTCTGCACACCTATA 57.461 37.500 0.00 0.00 0.00 1.31
5848 6137 6.941857 TGTTTGTATCTCTGCACACCTATAA 58.058 36.000 0.00 0.00 0.00 0.98
5849 6138 7.041721 TGTTTGTATCTCTGCACACCTATAAG 58.958 38.462 0.00 0.00 0.00 1.73
5850 6139 7.093509 TGTTTGTATCTCTGCACACCTATAAGA 60.094 37.037 0.00 0.00 0.00 2.10
5851 6140 7.418337 TTGTATCTCTGCACACCTATAAGAA 57.582 36.000 0.00 0.00 0.00 2.52
5852 6141 7.603180 TGTATCTCTGCACACCTATAAGAAT 57.397 36.000 0.00 0.00 0.00 2.40
5853 6142 8.706322 TGTATCTCTGCACACCTATAAGAATA 57.294 34.615 0.00 0.00 0.00 1.75
5854 6143 9.314133 TGTATCTCTGCACACCTATAAGAATAT 57.686 33.333 0.00 0.00 0.00 1.28
5858 6147 9.760926 TCTCTGCACACCTATAAGAATATATCT 57.239 33.333 0.00 0.00 41.32 1.98
5910 6324 6.192234 TCCGAAGCACTAGTTACTTTCTAG 57.808 41.667 8.86 0.00 40.23 2.43
5937 6351 4.413495 TTGCGTTAGTATTTGGAAGTGC 57.587 40.909 0.00 0.00 0.00 4.40
6137 10458 7.695618 GCTTCTGCAGAACTTCTAACATTTATG 59.304 37.037 25.16 10.47 39.41 1.90
6205 10527 0.396435 CCTTGTGTAGTCAGGGTGCA 59.604 55.000 0.00 0.00 31.24 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 9.462174 TGAACATATTTTCTTGTGACAATGTTC 57.538 29.630 22.09 22.09 32.21 3.18
138 141 0.028505 GCGGCTGCAGAATGTATGTG 59.971 55.000 20.43 0.00 42.15 3.21
156 159 2.827642 GCTGTGGGGATGCTCTGC 60.828 66.667 0.00 0.00 0.00 4.26
233 236 5.006386 AGTTCCTTTTGCCAGATCTGTTAG 58.994 41.667 21.11 7.49 0.00 2.34
263 269 2.361757 TGTCCGTCGGAAGTTCTTGTTA 59.638 45.455 17.32 0.00 31.38 2.41
288 294 6.318648 GGGTTAGCATATTCATTGTTCTGTGA 59.681 38.462 0.00 0.00 0.00 3.58
289 295 6.319658 AGGGTTAGCATATTCATTGTTCTGTG 59.680 38.462 0.00 0.00 0.00 3.66
290 296 6.426587 AGGGTTAGCATATTCATTGTTCTGT 58.573 36.000 0.00 0.00 0.00 3.41
291 297 6.949352 AGGGTTAGCATATTCATTGTTCTG 57.051 37.500 0.00 0.00 0.00 3.02
292 298 7.118723 TCAAGGGTTAGCATATTCATTGTTCT 58.881 34.615 0.00 0.00 0.00 3.01
293 299 7.067494 ACTCAAGGGTTAGCATATTCATTGTTC 59.933 37.037 0.00 0.00 0.00 3.18
294 300 6.891908 ACTCAAGGGTTAGCATATTCATTGTT 59.108 34.615 0.00 0.00 0.00 2.83
295 301 6.426587 ACTCAAGGGTTAGCATATTCATTGT 58.573 36.000 0.00 0.00 0.00 2.71
304 310 3.267031 AGGCTTTACTCAAGGGTTAGCAT 59.733 43.478 8.50 0.34 32.37 3.79
312 318 3.077359 CCTTCACAGGCTTTACTCAAGG 58.923 50.000 0.00 0.00 31.53 3.61
353 359 7.667043 TTTACTTTGTCATTTGATACGAGCT 57.333 32.000 0.00 0.00 0.00 4.09
363 369 9.934190 GCAAATCATGTTTTTACTTTGTCATTT 57.066 25.926 0.00 0.00 0.00 2.32
366 372 7.271511 AGGCAAATCATGTTTTTACTTTGTCA 58.728 30.769 0.00 0.00 32.24 3.58
367 373 7.653311 AGAGGCAAATCATGTTTTTACTTTGTC 59.347 33.333 0.00 0.00 0.00 3.18
369 375 7.095523 CCAGAGGCAAATCATGTTTTTACTTTG 60.096 37.037 0.00 6.35 0.00 2.77
370 376 6.930722 CCAGAGGCAAATCATGTTTTTACTTT 59.069 34.615 0.00 0.00 0.00 2.66
371 377 6.458210 CCAGAGGCAAATCATGTTTTTACTT 58.542 36.000 0.00 0.00 0.00 2.24
372 378 5.047092 CCCAGAGGCAAATCATGTTTTTACT 60.047 40.000 0.00 1.47 0.00 2.24
373 379 5.047377 TCCCAGAGGCAAATCATGTTTTTAC 60.047 40.000 0.00 0.00 0.00 2.01
374 380 5.083122 TCCCAGAGGCAAATCATGTTTTTA 58.917 37.500 0.00 0.00 0.00 1.52
421 427 0.332632 TCTTCTCTGCCATTTGGGGG 59.667 55.000 0.00 0.00 37.04 5.40
481 487 3.191371 CACTTGATTTCCTAGGTGGTTGC 59.809 47.826 9.08 0.00 37.07 4.17
504 510 1.079543 CGACTCACCTGCCCTCAAG 60.080 63.158 0.00 0.00 0.00 3.02
557 563 0.179043 TTGGCTAAATCCGGCGCATA 60.179 50.000 10.83 0.00 0.00 3.14
559 565 2.045829 TTGGCTAAATCCGGCGCA 60.046 55.556 10.83 0.00 0.00 6.09
560 566 1.373590 TTCTTGGCTAAATCCGGCGC 61.374 55.000 0.00 0.00 0.00 6.53
561 567 1.091537 TTTCTTGGCTAAATCCGGCG 58.908 50.000 0.00 0.00 0.00 6.46
562 568 1.202143 CGTTTCTTGGCTAAATCCGGC 60.202 52.381 0.00 0.00 0.00 6.13
563 569 1.400494 CCGTTTCTTGGCTAAATCCGG 59.600 52.381 0.00 0.00 0.00 5.14
583 589 1.546476 TCGTTTCCTCTTGCTCTCCTC 59.454 52.381 0.00 0.00 0.00 3.71
585 591 2.457366 TTCGTTTCCTCTTGCTCTCC 57.543 50.000 0.00 0.00 0.00 3.71
590 596 6.468000 CCGTTAATTAATTCGTTTCCTCTTGC 59.532 38.462 3.39 0.00 0.00 4.01
593 599 6.408869 TCCCGTTAATTAATTCGTTTCCTCT 58.591 36.000 3.39 0.00 0.00 3.69
598 604 9.401873 CTTCTTTTCCCGTTAATTAATTCGTTT 57.598 29.630 3.39 0.00 0.00 3.60
610 616 3.389925 TCTTCGCTTCTTTTCCCGTTA 57.610 42.857 0.00 0.00 0.00 3.18
611 617 2.249844 TCTTCGCTTCTTTTCCCGTT 57.750 45.000 0.00 0.00 0.00 4.44
613 619 2.806244 TCTTTCTTCGCTTCTTTTCCCG 59.194 45.455 0.00 0.00 0.00 5.14
614 620 3.815962 AGTCTTTCTTCGCTTCTTTTCCC 59.184 43.478 0.00 0.00 0.00 3.97
615 621 4.511826 TCAGTCTTTCTTCGCTTCTTTTCC 59.488 41.667 0.00 0.00 0.00 3.13
616 622 5.463724 TCTCAGTCTTTCTTCGCTTCTTTTC 59.536 40.000 0.00 0.00 0.00 2.29
617 623 5.235401 GTCTCAGTCTTTCTTCGCTTCTTTT 59.765 40.000 0.00 0.00 0.00 2.27
618 624 4.747605 GTCTCAGTCTTTCTTCGCTTCTTT 59.252 41.667 0.00 0.00 0.00 2.52
628 634 4.042809 TCCTCTCTCAGTCTCAGTCTTTCT 59.957 45.833 0.00 0.00 0.00 2.52
630 636 4.380843 TCCTCTCTCAGTCTCAGTCTTT 57.619 45.455 0.00 0.00 0.00 2.52
631 637 4.335416 CTTCCTCTCTCAGTCTCAGTCTT 58.665 47.826 0.00 0.00 0.00 3.01
713 720 2.606587 GGGGCCCAGACACACAGAT 61.607 63.158 26.86 0.00 0.00 2.90
748 756 2.732844 AGGAACGGAGGGAGTAGTAG 57.267 55.000 0.00 0.00 0.00 2.57
749 757 4.591321 TTTAGGAACGGAGGGAGTAGTA 57.409 45.455 0.00 0.00 0.00 1.82
750 758 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
751 759 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
752 760 6.612456 TCAAATATTTAGGAACGGAGGGAGTA 59.388 38.462 0.00 0.00 0.00 2.59
753 761 5.427481 TCAAATATTTAGGAACGGAGGGAGT 59.573 40.000 0.00 0.00 0.00 3.85
754 762 5.925509 TCAAATATTTAGGAACGGAGGGAG 58.074 41.667 0.00 0.00 0.00 4.30
755 763 5.961398 TCAAATATTTAGGAACGGAGGGA 57.039 39.130 0.00 0.00 0.00 4.20
756 764 7.582667 AAATCAAATATTTAGGAACGGAGGG 57.417 36.000 0.00 0.00 0.00 4.30
757 765 8.903820 AGAAAATCAAATATTTAGGAACGGAGG 58.096 33.333 0.00 0.00 0.00 4.30
774 782 9.825972 GTCGATTTGAAATGTCTAGAAAATCAA 57.174 29.630 18.57 14.37 34.98 2.57
775 783 9.219603 AGTCGATTTGAAATGTCTAGAAAATCA 57.780 29.630 18.57 10.38 34.98 2.57
785 793 9.779237 CGTATGTTATAGTCGATTTGAAATGTC 57.221 33.333 0.00 0.00 0.00 3.06
786 794 9.524106 TCGTATGTTATAGTCGATTTGAAATGT 57.476 29.630 0.00 0.00 0.00 2.71
790 798 9.524106 ACATTCGTATGTTATAGTCGATTTGAA 57.476 29.630 1.31 0.00 42.29 2.69
835 843 7.141363 ACAAAGCAAAATGAGTGAATCTACAC 58.859 34.615 0.00 0.00 40.60 2.90
836 844 7.275888 ACAAAGCAAAATGAGTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
837 845 9.334693 CTTACAAAGCAAAATGAGTGAATCTAC 57.665 33.333 0.00 0.00 0.00 2.59
838 846 9.066892 ACTTACAAAGCAAAATGAGTGAATCTA 57.933 29.630 0.00 0.00 0.00 1.98
839 847 7.945134 ACTTACAAAGCAAAATGAGTGAATCT 58.055 30.769 0.00 0.00 0.00 2.40
840 848 9.334693 CTACTTACAAAGCAAAATGAGTGAATC 57.665 33.333 0.00 0.00 0.00 2.52
841 849 8.850156 ACTACTTACAAAGCAAAATGAGTGAAT 58.150 29.630 0.00 0.00 0.00 2.57
842 850 8.220755 ACTACTTACAAAGCAAAATGAGTGAA 57.779 30.769 0.00 0.00 0.00 3.18
843 851 7.497579 TGACTACTTACAAAGCAAAATGAGTGA 59.502 33.333 0.00 0.00 0.00 3.41
844 852 7.639039 TGACTACTTACAAAGCAAAATGAGTG 58.361 34.615 0.00 0.00 0.00 3.51
845 853 7.801716 TGACTACTTACAAAGCAAAATGAGT 57.198 32.000 0.00 0.00 0.00 3.41
846 854 9.334693 GAATGACTACTTACAAAGCAAAATGAG 57.665 33.333 0.00 0.00 0.00 2.90
847 855 8.015087 CGAATGACTACTTACAAAGCAAAATGA 58.985 33.333 0.00 0.00 0.00 2.57
848 856 7.803189 ACGAATGACTACTTACAAAGCAAAATG 59.197 33.333 0.00 0.00 0.00 2.32
849 857 7.871853 ACGAATGACTACTTACAAAGCAAAAT 58.128 30.769 0.00 0.00 0.00 1.82
850 858 7.254227 ACGAATGACTACTTACAAAGCAAAA 57.746 32.000 0.00 0.00 0.00 2.44
851 859 6.854496 ACGAATGACTACTTACAAAGCAAA 57.146 33.333 0.00 0.00 0.00 3.68
852 860 6.480651 TCAACGAATGACTACTTACAAAGCAA 59.519 34.615 0.00 0.00 31.50 3.91
853 861 5.986741 TCAACGAATGACTACTTACAAAGCA 59.013 36.000 0.00 0.00 31.50 3.91
854 862 6.462073 TCAACGAATGACTACTTACAAAGC 57.538 37.500 0.00 0.00 31.50 3.51
855 863 9.878599 AATTTCAACGAATGACTACTTACAAAG 57.121 29.630 0.00 0.00 37.92 2.77
861 869 9.226606 TCCATAAATTTCAACGAATGACTACTT 57.773 29.630 0.00 0.00 37.92 2.24
862 870 8.786826 TCCATAAATTTCAACGAATGACTACT 57.213 30.769 0.00 0.00 37.92 2.57
863 871 9.834628 TTTCCATAAATTTCAACGAATGACTAC 57.165 29.630 0.00 0.00 37.92 2.73
865 873 8.792633 TCTTTCCATAAATTTCAACGAATGACT 58.207 29.630 0.00 0.00 37.92 3.41
866 874 8.850452 GTCTTTCCATAAATTTCAACGAATGAC 58.150 33.333 0.00 7.09 37.92 3.06
867 875 8.572185 TGTCTTTCCATAAATTTCAACGAATGA 58.428 29.630 0.00 0.00 35.85 2.57
868 876 8.741101 TGTCTTTCCATAAATTTCAACGAATG 57.259 30.769 0.00 0.00 0.00 2.67
869 877 9.757227 TTTGTCTTTCCATAAATTTCAACGAAT 57.243 25.926 0.00 0.00 0.00 3.34
870 878 9.757227 ATTTGTCTTTCCATAAATTTCAACGAA 57.243 25.926 0.00 0.00 0.00 3.85
882 890 8.679100 CCGTTACCAAATATTTGTCTTTCCATA 58.321 33.333 23.24 3.95 36.45 2.74
883 891 7.394923 TCCGTTACCAAATATTTGTCTTTCCAT 59.605 33.333 23.24 4.72 36.45 3.41
884 892 6.715718 TCCGTTACCAAATATTTGTCTTTCCA 59.284 34.615 23.24 3.62 36.45 3.53
885 893 7.094506 ACTCCGTTACCAAATATTTGTCTTTCC 60.095 37.037 23.24 8.09 36.45 3.13
886 894 7.813645 ACTCCGTTACCAAATATTTGTCTTTC 58.186 34.615 23.24 10.84 36.45 2.62
887 895 7.754851 ACTCCGTTACCAAATATTTGTCTTT 57.245 32.000 23.24 9.78 36.45 2.52
888 896 8.316214 TCTACTCCGTTACCAAATATTTGTCTT 58.684 33.333 23.24 11.86 36.45 3.01
889 897 7.844009 TCTACTCCGTTACCAAATATTTGTCT 58.156 34.615 23.24 12.47 36.45 3.41
890 898 8.658499 ATCTACTCCGTTACCAAATATTTGTC 57.342 34.615 23.24 11.68 36.45 3.18
898 906 9.369904 GTAATTGTAATCTACTCCGTTACCAAA 57.630 33.333 0.00 0.00 0.00 3.28
899 907 8.530311 TGTAATTGTAATCTACTCCGTTACCAA 58.470 33.333 0.00 0.00 0.00 3.67
900 908 8.065473 TGTAATTGTAATCTACTCCGTTACCA 57.935 34.615 0.00 0.00 0.00 3.25
901 909 8.408601 TCTGTAATTGTAATCTACTCCGTTACC 58.591 37.037 0.00 0.00 0.00 2.85
902 910 9.793252 TTCTGTAATTGTAATCTACTCCGTTAC 57.207 33.333 0.00 0.00 0.00 2.50
904 912 7.491696 GCTTCTGTAATTGTAATCTACTCCGTT 59.508 37.037 0.00 0.00 0.00 4.44
905 913 6.979238 GCTTCTGTAATTGTAATCTACTCCGT 59.021 38.462 0.00 0.00 0.00 4.69
906 914 6.142480 CGCTTCTGTAATTGTAATCTACTCCG 59.858 42.308 0.00 0.00 0.00 4.63
907 915 6.979238 ACGCTTCTGTAATTGTAATCTACTCC 59.021 38.462 0.00 0.00 0.00 3.85
908 916 7.988904 ACGCTTCTGTAATTGTAATCTACTC 57.011 36.000 0.00 0.00 0.00 2.59
909 917 8.773404 AAACGCTTCTGTAATTGTAATCTACT 57.227 30.769 0.00 0.00 0.00 2.57
910 918 9.821662 AAAAACGCTTCTGTAATTGTAATCTAC 57.178 29.630 0.00 0.00 0.00 2.59
947 956 2.132352 CCCTAGTGGCGGAGGGTAC 61.132 68.421 9.46 0.00 46.57 3.34
1358 1644 3.909086 GAACCGCTCAGCCTTGCCT 62.909 63.158 0.00 0.00 0.00 4.75
1367 1653 4.717629 CGTCGCAGGAACCGCTCA 62.718 66.667 0.00 0.00 0.00 4.26
1538 1824 2.702751 TTCTGGCGCGGTCTTCGAAA 62.703 55.000 8.83 0.00 42.43 3.46
1556 1842 1.544825 TAAGCAGCCTCTCAGCGGTT 61.545 55.000 0.00 0.00 38.01 4.44
1667 1953 1.306482 CCTCCCAAGCTCCTCCAGA 60.306 63.158 0.00 0.00 0.00 3.86
1712 1998 1.376683 TGCATTGTAGGTGACCGCC 60.377 57.895 0.00 0.00 0.00 6.13
1755 2041 2.755469 CCCCATTTCCACCTGCCG 60.755 66.667 0.00 0.00 0.00 5.69
1829 2115 3.521796 GCCTGCGCAAAGGATCCC 61.522 66.667 19.14 0.00 40.02 3.85
2066 2352 0.183492 TTCTCTTGCACCAGCCAAGT 59.817 50.000 0.00 0.00 41.13 3.16
2213 2499 2.344592 ACATAACCAGGAGGACAACCA 58.655 47.619 0.00 0.00 38.69 3.67
2626 2912 5.485620 CACTTCTCATCTCATCAAACCAGA 58.514 41.667 0.00 0.00 0.00 3.86
2774 3060 9.271828 CCATCAATTAGTGCACTATATGTAACA 57.728 33.333 26.54 10.09 0.00 2.41
3171 3457 1.698506 AGATCACGTCTCCCATCCTC 58.301 55.000 0.00 0.00 28.45 3.71
3482 3768 0.313043 CCAAAAGACCAGCAGCACAG 59.687 55.000 0.00 0.00 0.00 3.66
3976 4262 5.520288 AGATGTGTTCGAACAGTATATGCAC 59.480 40.000 30.38 15.71 40.05 4.57
4480 4766 2.156917 CTTGGAGCAAAGCATGAGACA 58.843 47.619 0.00 0.00 0.00 3.41
4497 4783 3.005554 GACTGGATCACACCACATCTTG 58.994 50.000 0.00 0.00 35.91 3.02
4756 5042 1.935933 ACGACCTAAATTAGCTGCCG 58.064 50.000 0.00 0.00 0.00 5.69
5046 5332 9.468532 GAAATGATGAATAAAGAAGGGTTATGC 57.531 33.333 0.00 0.00 0.00 3.14
5120 5406 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
5121 5407 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
5122 5408 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
5123 5409 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
5164 5450 8.882415 TCCCATAATATAAGACGTCTTTTGAC 57.118 34.615 33.82 0.00 45.55 3.18
5165 5451 9.542462 CTTCCCATAATATAAGACGTCTTTTGA 57.458 33.333 33.82 18.19 37.40 2.69
5166 5452 8.774586 CCTTCCCATAATATAAGACGTCTTTTG 58.225 37.037 33.82 20.03 37.40 2.44
5167 5453 8.711170 TCCTTCCCATAATATAAGACGTCTTTT 58.289 33.333 33.82 27.47 37.40 2.27
5168 5454 8.258850 TCCTTCCCATAATATAAGACGTCTTT 57.741 34.615 33.82 22.67 37.40 2.52
5169 5455 7.038941 CCTCCTTCCCATAATATAAGACGTCTT 60.039 40.741 31.70 31.70 39.85 3.01
5170 5456 6.437793 CCTCCTTCCCATAATATAAGACGTCT 59.562 42.308 13.58 13.58 0.00 4.18
5171 5457 6.210984 ACCTCCTTCCCATAATATAAGACGTC 59.789 42.308 7.70 7.70 0.00 4.34
5172 5458 6.082707 ACCTCCTTCCCATAATATAAGACGT 58.917 40.000 0.00 0.00 0.00 4.34
5173 5459 6.607004 ACCTCCTTCCCATAATATAAGACG 57.393 41.667 0.00 0.00 0.00 4.18
5174 5460 8.667592 ACTACCTCCTTCCCATAATATAAGAC 57.332 38.462 0.00 0.00 0.00 3.01
5175 5461 9.765295 GTACTACCTCCTTCCCATAATATAAGA 57.235 37.037 0.00 0.00 0.00 2.10
5176 5462 9.771140 AGTACTACCTCCTTCCCATAATATAAG 57.229 37.037 0.00 0.00 0.00 1.73
5178 5464 9.543231 CAAGTACTACCTCCTTCCCATAATATA 57.457 37.037 0.00 0.00 0.00 0.86
5179 5465 8.239478 TCAAGTACTACCTCCTTCCCATAATAT 58.761 37.037 0.00 0.00 0.00 1.28
5180 5466 7.598248 TCAAGTACTACCTCCTTCCCATAATA 58.402 38.462 0.00 0.00 0.00 0.98
5181 5467 6.449956 TCAAGTACTACCTCCTTCCCATAAT 58.550 40.000 0.00 0.00 0.00 1.28
5182 5468 5.845734 TCAAGTACTACCTCCTTCCCATAA 58.154 41.667 0.00 0.00 0.00 1.90
5183 5469 5.043582 ACTCAAGTACTACCTCCTTCCCATA 60.044 44.000 0.00 0.00 0.00 2.74
5184 5470 4.264895 ACTCAAGTACTACCTCCTTCCCAT 60.265 45.833 0.00 0.00 0.00 4.00
5185 5471 3.077088 ACTCAAGTACTACCTCCTTCCCA 59.923 47.826 0.00 0.00 0.00 4.37
5186 5472 3.710724 ACTCAAGTACTACCTCCTTCCC 58.289 50.000 0.00 0.00 0.00 3.97
5187 5473 5.535783 GGATACTCAAGTACTACCTCCTTCC 59.464 48.000 0.00 0.00 32.72 3.46
5188 5474 6.638096 GGATACTCAAGTACTACCTCCTTC 57.362 45.833 0.00 0.00 32.72 3.46
5306 5592 5.777732 AGCAATACACACTAAAATTTCCCCA 59.222 36.000 0.00 0.00 0.00 4.96
5313 5599 9.762933 AAACATCAAAGCAATACACACTAAAAT 57.237 25.926 0.00 0.00 0.00 1.82
5589 5875 5.279384 ACTCGTTGCAAGTATACTATTCCG 58.721 41.667 5.65 5.79 0.00 4.30
5591 5877 7.063074 ACACAACTCGTTGCAAGTATACTATTC 59.937 37.037 5.65 0.00 44.03 1.75
5641 5927 4.718961 ACCATAGCAGCCCAGTTATAAAG 58.281 43.478 0.00 0.00 0.00 1.85
5752 6041 1.896220 TTCGAAGAAACCATGCAGCT 58.104 45.000 0.00 0.00 45.90 4.24
5753 6042 2.927553 ATTCGAAGAAACCATGCAGC 57.072 45.000 3.35 0.00 45.90 5.25
5754 6043 7.061094 GTCTAAAAATTCGAAGAAACCATGCAG 59.939 37.037 3.35 0.00 45.90 4.41
5755 6044 6.861055 GTCTAAAAATTCGAAGAAACCATGCA 59.139 34.615 3.35 0.00 45.90 3.96
5756 6045 6.861055 TGTCTAAAAATTCGAAGAAACCATGC 59.139 34.615 3.35 0.00 45.90 4.06
5757 6046 8.970691 ATGTCTAAAAATTCGAAGAAACCATG 57.029 30.769 3.35 0.00 45.90 3.66
5758 6047 8.792633 TGATGTCTAAAAATTCGAAGAAACCAT 58.207 29.630 3.35 0.00 45.90 3.55
5759 6048 8.160521 TGATGTCTAAAAATTCGAAGAAACCA 57.839 30.769 3.35 0.00 45.90 3.67
5760 6049 9.458374 TTTGATGTCTAAAAATTCGAAGAAACC 57.542 29.630 3.35 0.00 45.90 3.27
5808 6097 9.182214 AGATACAAACATATTGCTTGAGTCATT 57.818 29.630 0.00 0.00 28.90 2.57
5809 6098 8.743085 AGATACAAACATATTGCTTGAGTCAT 57.257 30.769 0.00 0.00 28.90 3.06
5810 6099 8.043113 AGAGATACAAACATATTGCTTGAGTCA 58.957 33.333 0.00 0.00 28.90 3.41
5811 6100 8.333908 CAGAGATACAAACATATTGCTTGAGTC 58.666 37.037 0.00 0.00 28.90 3.36
5812 6101 7.201679 GCAGAGATACAAACATATTGCTTGAGT 60.202 37.037 0.00 0.00 28.90 3.41
5813 6102 7.130917 GCAGAGATACAAACATATTGCTTGAG 58.869 38.462 0.00 0.00 28.90 3.02
5814 6103 6.598850 TGCAGAGATACAAACATATTGCTTGA 59.401 34.615 0.00 0.00 28.90 3.02
5815 6104 6.690098 GTGCAGAGATACAAACATATTGCTTG 59.310 38.462 0.00 0.00 30.36 4.01
5816 6105 6.375174 TGTGCAGAGATACAAACATATTGCTT 59.625 34.615 0.00 0.00 0.00 3.91
5817 6106 5.882000 TGTGCAGAGATACAAACATATTGCT 59.118 36.000 0.00 0.00 0.00 3.91
5818 6107 5.967674 GTGTGCAGAGATACAAACATATTGC 59.032 40.000 0.00 0.00 0.00 3.56
5819 6108 6.317140 AGGTGTGCAGAGATACAAACATATTG 59.683 38.462 0.00 0.00 0.00 1.90
5820 6109 6.418101 AGGTGTGCAGAGATACAAACATATT 58.582 36.000 0.00 0.00 0.00 1.28
5821 6110 5.994250 AGGTGTGCAGAGATACAAACATAT 58.006 37.500 0.00 0.00 0.00 1.78
5822 6111 5.420725 AGGTGTGCAGAGATACAAACATA 57.579 39.130 0.00 0.00 0.00 2.29
5823 6112 4.292186 AGGTGTGCAGAGATACAAACAT 57.708 40.909 0.00 0.00 0.00 2.71
5824 6113 3.769739 AGGTGTGCAGAGATACAAACA 57.230 42.857 0.00 0.00 0.00 2.83
5825 6114 7.265673 TCTTATAGGTGTGCAGAGATACAAAC 58.734 38.462 0.00 0.00 0.00 2.93
5826 6115 7.418337 TCTTATAGGTGTGCAGAGATACAAA 57.582 36.000 0.00 0.00 0.00 2.83
5827 6116 7.418337 TTCTTATAGGTGTGCAGAGATACAA 57.582 36.000 0.00 0.00 0.00 2.41
5828 6117 7.603180 ATTCTTATAGGTGTGCAGAGATACA 57.397 36.000 0.00 0.00 0.00 2.29
5832 6121 9.760926 AGATATATTCTTATAGGTGTGCAGAGA 57.239 33.333 0.00 0.00 0.00 3.10
5853 6142 9.883142 GCTGCATCTAGAAAAGGTATAAGATAT 57.117 33.333 0.00 0.00 0.00 1.63
5854 6143 9.094578 AGCTGCATCTAGAAAAGGTATAAGATA 57.905 33.333 1.02 0.00 0.00 1.98
5855 6144 7.972301 AGCTGCATCTAGAAAAGGTATAAGAT 58.028 34.615 1.02 0.00 0.00 2.40
5856 6145 7.366847 AGCTGCATCTAGAAAAGGTATAAGA 57.633 36.000 1.02 0.00 0.00 2.10
5857 6146 7.600752 GGTAGCTGCATCTAGAAAAGGTATAAG 59.399 40.741 3.61 0.00 0.00 1.73
5858 6147 7.070696 TGGTAGCTGCATCTAGAAAAGGTATAA 59.929 37.037 3.61 4.72 0.00 0.98
5859 6148 6.553476 TGGTAGCTGCATCTAGAAAAGGTATA 59.447 38.462 3.61 5.48 0.00 1.47
5860 6149 5.366768 TGGTAGCTGCATCTAGAAAAGGTAT 59.633 40.000 3.61 0.00 0.00 2.73
5861 6150 4.714802 TGGTAGCTGCATCTAGAAAAGGTA 59.285 41.667 3.61 2.19 0.00 3.08
5862 6151 3.519510 TGGTAGCTGCATCTAGAAAAGGT 59.480 43.478 3.61 3.19 0.00 3.50
5863 6152 4.142609 TGGTAGCTGCATCTAGAAAAGG 57.857 45.455 3.61 0.00 0.00 3.11
5864 6153 6.593382 GGATATGGTAGCTGCATCTAGAAAAG 59.407 42.308 3.61 0.00 0.00 2.27
5865 6154 6.467677 GGATATGGTAGCTGCATCTAGAAAA 58.532 40.000 3.61 0.00 0.00 2.29
5866 6155 5.336770 CGGATATGGTAGCTGCATCTAGAAA 60.337 44.000 3.61 0.00 0.00 2.52
5867 6156 4.158579 CGGATATGGTAGCTGCATCTAGAA 59.841 45.833 3.61 0.00 0.00 2.10
5868 6157 3.696548 CGGATATGGTAGCTGCATCTAGA 59.303 47.826 3.61 0.00 0.00 2.43
5869 6158 3.696548 TCGGATATGGTAGCTGCATCTAG 59.303 47.826 3.61 0.00 0.00 2.43
5870 6159 3.697166 TCGGATATGGTAGCTGCATCTA 58.303 45.455 3.61 0.00 0.00 1.98
5871 6160 2.529632 TCGGATATGGTAGCTGCATCT 58.470 47.619 3.61 0.00 0.00 2.90
5872 6161 3.257393 CTTCGGATATGGTAGCTGCATC 58.743 50.000 3.61 0.00 0.00 3.91
5873 6162 2.613977 GCTTCGGATATGGTAGCTGCAT 60.614 50.000 3.61 0.00 0.00 3.96
5874 6163 1.270305 GCTTCGGATATGGTAGCTGCA 60.270 52.381 3.61 0.00 0.00 4.41
5875 6164 1.270305 TGCTTCGGATATGGTAGCTGC 60.270 52.381 0.00 0.00 33.15 5.25
5876 6165 2.036475 AGTGCTTCGGATATGGTAGCTG 59.964 50.000 0.00 0.00 33.15 4.24
5910 6324 5.098218 TCCAAATACTAACGCAAACACAC 57.902 39.130 0.00 0.00 0.00 3.82
5937 6351 2.430465 AGAAGCCATACAAGCACACAG 58.570 47.619 0.00 0.00 0.00 3.66
6137 10458 3.676291 TGTTCCCCTGCAAATTAAAGC 57.324 42.857 0.00 0.00 0.00 3.51
6187 10509 1.873591 GTTGCACCCTGACTACACAAG 59.126 52.381 0.00 0.00 0.00 3.16
6205 10527 5.913137 TTCCACATTCAGTCACAAAAGTT 57.087 34.783 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.