Multiple sequence alignment - TraesCS2D01G345600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G345600 chr2D 100.000 3263 0 0 1 3263 441570906 441574168 0.000000e+00 6026.0
1 TraesCS2D01G345600 chr2B 94.110 2343 104 15 943 3263 519182527 519184857 0.000000e+00 3531.0
2 TraesCS2D01G345600 chr2B 92.166 434 23 1 524 946 519182017 519182450 1.300000e-168 603.0
3 TraesCS2D01G345600 chr2A 93.702 2350 106 21 943 3263 585209999 585212335 0.000000e+00 3482.0
4 TraesCS2D01G345600 chr2A 92.890 436 16 5 526 946 585209487 585209922 1.290000e-173 619.0
5 TraesCS2D01G345600 chr5B 95.000 40 1 1 121 160 68046350 68046388 9.780000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G345600 chr2D 441570906 441574168 3262 False 6026.0 6026 100.000 1 3263 1 chr2D.!!$F1 3262
1 TraesCS2D01G345600 chr2B 519182017 519184857 2840 False 2067.0 3531 93.138 524 3263 2 chr2B.!!$F1 2739
2 TraesCS2D01G345600 chr2A 585209487 585212335 2848 False 2050.5 3482 93.296 526 3263 2 chr2A.!!$F1 2737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 270 0.030908 GCTACGAGCGCCTCTGTATT 59.969 55.0 2.29 0.0 0.00 1.89 F
1771 1867 0.102844 CCACACAGGTTTGGTGCAAG 59.897 55.0 0.00 0.0 39.87 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2104 0.545309 CCACTCCCAGAGGACTCCAA 60.545 60.0 0.00 0.0 37.19 3.53 R
2777 2882 0.103572 TCTTGGCGCGGTTATCTACC 59.896 55.0 8.83 0.0 44.03 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.501169 GTGAAACAACAGCAATGGGC 58.499 50.000 0.00 0.00 39.19 5.36
23 24 2.194195 GTGAAACAACAGCAATGGGCG 61.194 52.381 0.00 0.00 42.74 6.13
31 32 3.599704 GCAATGGGCGGCCTCATC 61.600 66.667 29.87 12.02 0.00 2.92
32 33 2.124193 CAATGGGCGGCCTCATCA 60.124 61.111 29.87 8.75 0.00 3.07
33 34 1.753848 CAATGGGCGGCCTCATCAA 60.754 57.895 29.87 7.89 0.00 2.57
34 35 1.000233 AATGGGCGGCCTCATCAAA 60.000 52.632 29.87 7.03 0.00 2.69
35 36 0.397535 AATGGGCGGCCTCATCAAAT 60.398 50.000 29.87 9.39 0.00 2.32
36 37 0.478072 ATGGGCGGCCTCATCAAATA 59.522 50.000 29.87 5.33 0.00 1.40
37 38 0.478072 TGGGCGGCCTCATCAAATAT 59.522 50.000 29.87 0.00 0.00 1.28
38 39 1.702401 TGGGCGGCCTCATCAAATATA 59.298 47.619 29.87 0.01 0.00 0.86
39 40 2.290260 TGGGCGGCCTCATCAAATATAG 60.290 50.000 29.87 0.00 0.00 1.31
40 41 2.359900 GGCGGCCTCATCAAATATAGG 58.640 52.381 12.87 0.00 0.00 2.57
41 42 2.290323 GGCGGCCTCATCAAATATAGGT 60.290 50.000 12.87 0.00 0.00 3.08
42 43 3.003480 GCGGCCTCATCAAATATAGGTC 58.997 50.000 0.00 0.00 0.00 3.85
43 44 3.307059 GCGGCCTCATCAAATATAGGTCT 60.307 47.826 0.00 0.00 31.32 3.85
44 45 4.499183 CGGCCTCATCAAATATAGGTCTC 58.501 47.826 0.00 0.00 31.32 3.36
45 46 4.499183 GGCCTCATCAAATATAGGTCTCG 58.501 47.826 0.00 0.00 30.83 4.04
46 47 4.021016 GGCCTCATCAAATATAGGTCTCGT 60.021 45.833 0.00 0.00 30.83 4.18
47 48 5.511545 GGCCTCATCAAATATAGGTCTCGTT 60.512 44.000 0.00 0.00 30.83 3.85
48 49 5.992217 GCCTCATCAAATATAGGTCTCGTTT 59.008 40.000 0.00 0.00 0.00 3.60
49 50 6.483640 GCCTCATCAAATATAGGTCTCGTTTT 59.516 38.462 0.00 0.00 0.00 2.43
50 51 7.656137 GCCTCATCAAATATAGGTCTCGTTTTA 59.344 37.037 0.00 0.00 0.00 1.52
51 52 9.712305 CCTCATCAAATATAGGTCTCGTTTTAT 57.288 33.333 0.00 0.00 0.00 1.40
58 59 8.888579 AATATAGGTCTCGTTTTATTGTCTGG 57.111 34.615 0.00 0.00 0.00 3.86
59 60 4.884668 AGGTCTCGTTTTATTGTCTGGA 57.115 40.909 0.00 0.00 0.00 3.86
60 61 5.223449 AGGTCTCGTTTTATTGTCTGGAA 57.777 39.130 0.00 0.00 0.00 3.53
61 62 5.805728 AGGTCTCGTTTTATTGTCTGGAAT 58.194 37.500 0.00 0.00 0.00 3.01
62 63 5.643777 AGGTCTCGTTTTATTGTCTGGAATG 59.356 40.000 0.00 0.00 0.00 2.67
63 64 5.163754 GGTCTCGTTTTATTGTCTGGAATGG 60.164 44.000 0.00 0.00 0.00 3.16
64 65 5.642063 GTCTCGTTTTATTGTCTGGAATGGA 59.358 40.000 0.00 0.00 0.00 3.41
65 66 5.874810 TCTCGTTTTATTGTCTGGAATGGAG 59.125 40.000 0.00 0.00 0.00 3.86
66 67 5.556915 TCGTTTTATTGTCTGGAATGGAGT 58.443 37.500 0.00 0.00 0.00 3.85
67 68 6.703319 TCGTTTTATTGTCTGGAATGGAGTA 58.297 36.000 0.00 0.00 0.00 2.59
68 69 7.335627 TCGTTTTATTGTCTGGAATGGAGTAT 58.664 34.615 0.00 0.00 0.00 2.12
69 70 7.827236 TCGTTTTATTGTCTGGAATGGAGTATT 59.173 33.333 0.00 0.00 0.00 1.89
70 71 8.458843 CGTTTTATTGTCTGGAATGGAGTATTT 58.541 33.333 0.00 0.00 0.00 1.40
73 74 8.519799 TTATTGTCTGGAATGGAGTATTTTCC 57.480 34.615 0.00 0.00 39.50 3.13
86 87 5.918608 GAGTATTTTCCAGCTACTCCATCA 58.081 41.667 0.00 0.00 36.80 3.07
87 88 5.923204 AGTATTTTCCAGCTACTCCATCAG 58.077 41.667 0.00 0.00 0.00 2.90
88 89 4.851639 ATTTTCCAGCTACTCCATCAGT 57.148 40.909 0.00 0.00 39.41 3.41
89 90 3.895232 TTTCCAGCTACTCCATCAGTC 57.105 47.619 0.00 0.00 36.43 3.51
90 91 2.836636 TCCAGCTACTCCATCAGTCT 57.163 50.000 0.00 0.00 36.43 3.24
91 92 3.953542 TCCAGCTACTCCATCAGTCTA 57.046 47.619 0.00 0.00 36.43 2.59
92 93 3.826524 TCCAGCTACTCCATCAGTCTAG 58.173 50.000 0.00 0.00 36.43 2.43
93 94 3.459969 TCCAGCTACTCCATCAGTCTAGA 59.540 47.826 0.00 0.00 36.43 2.43
94 95 4.105537 TCCAGCTACTCCATCAGTCTAGAT 59.894 45.833 0.00 0.00 36.43 1.98
95 96 5.310857 TCCAGCTACTCCATCAGTCTAGATA 59.689 44.000 0.00 0.00 36.43 1.98
96 97 5.647658 CCAGCTACTCCATCAGTCTAGATAG 59.352 48.000 0.00 0.00 36.43 2.08
97 98 6.472016 CAGCTACTCCATCAGTCTAGATAGA 58.528 44.000 0.00 0.00 36.43 1.98
98 99 6.939730 CAGCTACTCCATCAGTCTAGATAGAA 59.060 42.308 0.00 0.00 36.43 2.10
99 100 7.119699 CAGCTACTCCATCAGTCTAGATAGAAG 59.880 44.444 0.00 0.00 36.43 2.85
100 101 6.374333 GCTACTCCATCAGTCTAGATAGAAGG 59.626 46.154 10.66 10.66 36.43 3.46
101 102 6.274322 ACTCCATCAGTCTAGATAGAAGGT 57.726 41.667 14.46 4.83 33.47 3.50
102 103 7.395525 ACTCCATCAGTCTAGATAGAAGGTA 57.604 40.000 14.46 5.34 33.47 3.08
103 104 7.458397 ACTCCATCAGTCTAGATAGAAGGTAG 58.542 42.308 14.46 12.92 33.47 3.18
104 105 6.785076 TCCATCAGTCTAGATAGAAGGTAGG 58.215 44.000 14.46 7.29 33.47 3.18
105 106 5.949354 CCATCAGTCTAGATAGAAGGTAGGG 59.051 48.000 0.00 0.00 33.47 3.53
106 107 4.988029 TCAGTCTAGATAGAAGGTAGGGC 58.012 47.826 0.00 0.00 33.47 5.19
107 108 4.665957 TCAGTCTAGATAGAAGGTAGGGCT 59.334 45.833 0.00 0.00 33.47 5.19
108 109 4.764823 CAGTCTAGATAGAAGGTAGGGCTG 59.235 50.000 0.00 0.00 33.47 4.85
109 110 4.665957 AGTCTAGATAGAAGGTAGGGCTGA 59.334 45.833 0.00 0.00 33.47 4.26
110 111 5.134679 AGTCTAGATAGAAGGTAGGGCTGAA 59.865 44.000 0.00 0.00 33.47 3.02
111 112 5.834204 GTCTAGATAGAAGGTAGGGCTGAAA 59.166 44.000 0.00 0.00 33.47 2.69
112 113 6.495526 GTCTAGATAGAAGGTAGGGCTGAAAT 59.504 42.308 0.00 0.00 33.47 2.17
113 114 7.670559 GTCTAGATAGAAGGTAGGGCTGAAATA 59.329 40.741 0.00 0.00 33.47 1.40
114 115 6.926630 AGATAGAAGGTAGGGCTGAAATAG 57.073 41.667 0.00 0.00 0.00 1.73
115 116 6.625267 AGATAGAAGGTAGGGCTGAAATAGA 58.375 40.000 0.00 0.00 0.00 1.98
116 117 6.723977 AGATAGAAGGTAGGGCTGAAATAGAG 59.276 42.308 0.00 0.00 0.00 2.43
117 118 4.884961 AGAAGGTAGGGCTGAAATAGAGA 58.115 43.478 0.00 0.00 0.00 3.10
118 119 5.472347 AGAAGGTAGGGCTGAAATAGAGAT 58.528 41.667 0.00 0.00 0.00 2.75
119 120 5.908247 AGAAGGTAGGGCTGAAATAGAGATT 59.092 40.000 0.00 0.00 0.00 2.40
120 121 6.388394 AGAAGGTAGGGCTGAAATAGAGATTT 59.612 38.462 0.00 0.00 38.00 2.17
121 122 6.582929 AGGTAGGGCTGAAATAGAGATTTT 57.417 37.500 0.00 0.00 35.33 1.82
122 123 6.974795 AGGTAGGGCTGAAATAGAGATTTTT 58.025 36.000 0.00 0.00 35.33 1.94
123 124 7.057264 AGGTAGGGCTGAAATAGAGATTTTTC 58.943 38.462 0.00 0.00 35.33 2.29
124 125 7.057264 GGTAGGGCTGAAATAGAGATTTTTCT 58.943 38.462 0.00 0.00 35.33 2.52
125 126 7.558081 GGTAGGGCTGAAATAGAGATTTTTCTT 59.442 37.037 0.00 0.00 35.33 2.52
126 127 8.961634 GTAGGGCTGAAATAGAGATTTTTCTTT 58.038 33.333 0.00 0.00 35.33 2.52
127 128 8.427902 AGGGCTGAAATAGAGATTTTTCTTTT 57.572 30.769 0.00 0.00 35.33 2.27
128 129 8.874156 AGGGCTGAAATAGAGATTTTTCTTTTT 58.126 29.630 0.00 0.00 35.33 1.94
165 166 8.868522 ACTTCTCTTTATTGATCAATGTCCAA 57.131 30.769 27.59 13.20 32.50 3.53
166 167 8.954350 ACTTCTCTTTATTGATCAATGTCCAAG 58.046 33.333 27.59 21.43 32.50 3.61
167 168 8.868522 TTCTCTTTATTGATCAATGTCCAAGT 57.131 30.769 27.59 5.27 32.50 3.16
168 169 9.958180 TTCTCTTTATTGATCAATGTCCAAGTA 57.042 29.630 27.59 14.10 32.50 2.24
169 170 9.383519 TCTCTTTATTGATCAATGTCCAAGTAC 57.616 33.333 27.59 0.00 32.50 2.73
170 171 9.166173 CTCTTTATTGATCAATGTCCAAGTACA 57.834 33.333 27.59 3.86 32.50 2.90
171 172 9.685276 TCTTTATTGATCAATGTCCAAGTACAT 57.315 29.630 27.59 3.14 41.87 2.29
172 173 9.726232 CTTTATTGATCAATGTCCAAGTACATG 57.274 33.333 27.59 0.00 39.98 3.21
173 174 6.704289 ATTGATCAATGTCCAAGTACATGG 57.296 37.500 20.11 10.98 39.98 3.66
174 175 4.525996 TGATCAATGTCCAAGTACATGGG 58.474 43.478 16.76 4.31 39.98 4.00
175 176 4.227073 TGATCAATGTCCAAGTACATGGGA 59.773 41.667 16.76 6.41 39.98 4.37
176 177 4.649267 TCAATGTCCAAGTACATGGGAA 57.351 40.909 16.76 6.25 39.98 3.97
177 178 5.191727 TCAATGTCCAAGTACATGGGAAT 57.808 39.130 16.76 8.21 39.98 3.01
178 179 6.320434 TCAATGTCCAAGTACATGGGAATA 57.680 37.500 16.76 0.00 39.98 1.75
179 180 6.119536 TCAATGTCCAAGTACATGGGAATAC 58.880 40.000 16.76 8.29 39.98 1.89
180 181 5.708736 ATGTCCAAGTACATGGGAATACA 57.291 39.130 16.76 13.38 41.05 2.29
181 182 5.708736 TGTCCAAGTACATGGGAATACAT 57.291 39.130 16.76 0.00 41.05 2.29
194 195 5.891198 TGGGAATACATGAAATATCAGGGG 58.109 41.667 0.00 0.00 41.57 4.79
195 196 5.222316 TGGGAATACATGAAATATCAGGGGG 60.222 44.000 0.00 0.00 41.57 5.40
196 197 5.015178 GGGAATACATGAAATATCAGGGGGA 59.985 44.000 0.00 0.00 41.57 4.81
197 198 6.297830 GGGAATACATGAAATATCAGGGGGAT 60.298 42.308 0.00 0.00 41.57 3.85
198 199 7.184862 GGAATACATGAAATATCAGGGGGATT 58.815 38.462 0.00 0.00 41.57 3.01
199 200 7.675619 GGAATACATGAAATATCAGGGGGATTT 59.324 37.037 0.00 0.00 41.57 2.17
200 201 9.753674 GAATACATGAAATATCAGGGGGATTTA 57.246 33.333 0.00 0.00 41.57 1.40
201 202 9.759473 AATACATGAAATATCAGGGGGATTTAG 57.241 33.333 0.00 0.00 41.57 1.85
202 203 6.555711 ACATGAAATATCAGGGGGATTTAGG 58.444 40.000 0.00 0.00 41.57 2.69
203 204 6.335311 ACATGAAATATCAGGGGGATTTAGGA 59.665 38.462 0.00 0.00 41.57 2.94
204 205 6.454223 TGAAATATCAGGGGGATTTAGGAG 57.546 41.667 0.00 0.00 37.44 3.69
205 206 4.936685 AATATCAGGGGGATTTAGGAGC 57.063 45.455 0.00 0.00 37.44 4.70
206 207 1.450360 ATCAGGGGGATTTAGGAGCC 58.550 55.000 0.00 0.00 29.81 4.70
207 208 0.045623 TCAGGGGGATTTAGGAGCCA 59.954 55.000 0.00 0.00 0.00 4.75
208 209 0.183731 CAGGGGGATTTAGGAGCCAC 59.816 60.000 0.00 0.00 0.00 5.01
209 210 0.253630 AGGGGGATTTAGGAGCCACA 60.254 55.000 0.00 0.00 0.00 4.17
210 211 0.106669 GGGGGATTTAGGAGCCACAC 60.107 60.000 0.00 0.00 0.00 3.82
211 212 0.623723 GGGGATTTAGGAGCCACACA 59.376 55.000 0.00 0.00 0.00 3.72
212 213 1.215423 GGGGATTTAGGAGCCACACAT 59.785 52.381 0.00 0.00 0.00 3.21
213 214 2.441750 GGGGATTTAGGAGCCACACATA 59.558 50.000 0.00 0.00 0.00 2.29
214 215 3.496870 GGGGATTTAGGAGCCACACATAG 60.497 52.174 0.00 0.00 0.00 2.23
215 216 3.142174 GGATTTAGGAGCCACACATAGC 58.858 50.000 0.00 0.00 0.00 2.97
216 217 2.309528 TTTAGGAGCCACACATAGCG 57.690 50.000 0.00 0.00 0.00 4.26
217 218 1.191535 TTAGGAGCCACACATAGCGT 58.808 50.000 0.00 0.00 0.00 5.07
218 219 0.744874 TAGGAGCCACACATAGCGTC 59.255 55.000 0.00 0.00 0.00 5.19
219 220 1.521681 GGAGCCACACATAGCGTCC 60.522 63.158 0.00 0.00 0.00 4.79
220 221 1.517832 GAGCCACACATAGCGTCCT 59.482 57.895 0.00 0.00 0.00 3.85
221 222 0.744874 GAGCCACACATAGCGTCCTA 59.255 55.000 0.00 0.00 0.00 2.94
222 223 1.136305 GAGCCACACATAGCGTCCTAA 59.864 52.381 0.00 0.00 0.00 2.69
223 224 1.553248 AGCCACACATAGCGTCCTAAA 59.447 47.619 0.00 0.00 0.00 1.85
224 225 2.027561 AGCCACACATAGCGTCCTAAAA 60.028 45.455 0.00 0.00 0.00 1.52
225 226 2.351726 GCCACACATAGCGTCCTAAAAG 59.648 50.000 0.00 0.00 0.00 2.27
226 227 2.936498 CCACACATAGCGTCCTAAAAGG 59.064 50.000 0.00 0.00 36.46 3.11
227 228 3.369052 CCACACATAGCGTCCTAAAAGGA 60.369 47.826 0.00 0.00 43.43 3.36
228 229 3.865745 CACACATAGCGTCCTAAAAGGAG 59.134 47.826 0.00 0.00 46.90 3.69
229 230 3.767673 ACACATAGCGTCCTAAAAGGAGA 59.232 43.478 0.00 0.00 46.90 3.71
230 231 4.113354 CACATAGCGTCCTAAAAGGAGAC 58.887 47.826 0.00 0.00 46.90 3.36
231 232 3.132467 ACATAGCGTCCTAAAAGGAGACC 59.868 47.826 0.00 0.00 46.90 3.85
232 233 1.939980 AGCGTCCTAAAAGGAGACCT 58.060 50.000 0.00 0.00 46.90 3.85
233 234 3.097342 AGCGTCCTAAAAGGAGACCTA 57.903 47.619 0.00 0.00 46.90 3.08
234 235 3.438183 AGCGTCCTAAAAGGAGACCTAA 58.562 45.455 0.00 0.00 46.90 2.69
235 236 3.836562 AGCGTCCTAAAAGGAGACCTAAA 59.163 43.478 0.00 0.00 46.90 1.85
236 237 4.081586 AGCGTCCTAAAAGGAGACCTAAAG 60.082 45.833 0.00 0.00 46.90 1.85
237 238 4.322574 GCGTCCTAAAAGGAGACCTAAAGT 60.323 45.833 0.00 0.00 46.90 2.66
238 239 5.105595 GCGTCCTAAAAGGAGACCTAAAGTA 60.106 44.000 0.00 0.00 46.90 2.24
239 240 6.406737 GCGTCCTAAAAGGAGACCTAAAGTAT 60.407 42.308 0.00 0.00 46.90 2.12
240 241 6.979238 CGTCCTAAAAGGAGACCTAAAGTATG 59.021 42.308 0.00 0.00 46.90 2.39
241 242 7.363617 CGTCCTAAAAGGAGACCTAAAGTATGT 60.364 40.741 0.00 0.00 46.90 2.29
242 243 8.319881 GTCCTAAAAGGAGACCTAAAGTATGTT 58.680 37.037 0.00 0.00 46.90 2.71
243 244 8.887393 TCCTAAAAGGAGACCTAAAGTATGTTT 58.113 33.333 0.00 0.00 40.06 2.83
246 247 8.563123 AAAAGGAGACCTAAAGTATGTTTAGC 57.437 34.615 0.00 0.00 31.13 3.09
247 248 6.869206 AGGAGACCTAAAGTATGTTTAGCA 57.131 37.500 0.00 0.00 28.47 3.49
248 249 7.253905 AGGAGACCTAAAGTATGTTTAGCAA 57.746 36.000 0.00 0.00 28.47 3.91
249 250 7.331791 AGGAGACCTAAAGTATGTTTAGCAAG 58.668 38.462 0.00 0.00 28.47 4.01
250 251 6.539103 GGAGACCTAAAGTATGTTTAGCAAGG 59.461 42.308 4.58 0.00 0.00 3.61
251 252 5.880887 AGACCTAAAGTATGTTTAGCAAGGC 59.119 40.000 4.58 0.00 0.00 4.35
252 253 5.816682 ACCTAAAGTATGTTTAGCAAGGCT 58.183 37.500 0.00 0.00 43.41 4.58
253 254 6.954232 ACCTAAAGTATGTTTAGCAAGGCTA 58.046 36.000 0.00 0.00 40.44 3.93
254 255 6.822170 ACCTAAAGTATGTTTAGCAAGGCTAC 59.178 38.462 0.00 0.00 41.12 3.58
255 256 5.796350 AAAGTATGTTTAGCAAGGCTACG 57.204 39.130 0.00 0.00 41.12 3.51
256 257 4.730949 AGTATGTTTAGCAAGGCTACGA 57.269 40.909 0.00 0.00 41.12 3.43
257 258 4.683832 AGTATGTTTAGCAAGGCTACGAG 58.316 43.478 0.00 0.00 41.12 4.18
258 259 1.722011 TGTTTAGCAAGGCTACGAGC 58.278 50.000 0.00 0.00 41.12 5.03
259 260 0.645868 GTTTAGCAAGGCTACGAGCG 59.354 55.000 0.00 0.00 43.62 5.03
260 261 1.082117 TTTAGCAAGGCTACGAGCGC 61.082 55.000 0.00 0.00 43.62 5.92
261 262 2.901051 TTAGCAAGGCTACGAGCGCC 62.901 60.000 2.29 6.32 43.62 6.53
266 267 3.827898 GGCTACGAGCGCCTCTGT 61.828 66.667 2.29 0.00 43.62 3.41
267 268 2.478890 GGCTACGAGCGCCTCTGTA 61.479 63.158 2.29 0.73 43.62 2.74
268 269 1.655329 GCTACGAGCGCCTCTGTAT 59.345 57.895 2.29 0.00 0.00 2.29
269 270 0.030908 GCTACGAGCGCCTCTGTATT 59.969 55.000 2.29 0.00 0.00 1.89
270 271 1.536284 GCTACGAGCGCCTCTGTATTT 60.536 52.381 2.29 0.00 0.00 1.40
271 272 2.120232 CTACGAGCGCCTCTGTATTTG 58.880 52.381 2.29 0.00 0.00 2.32
272 273 0.530744 ACGAGCGCCTCTGTATTTGA 59.469 50.000 2.29 0.00 0.00 2.69
273 274 1.137086 ACGAGCGCCTCTGTATTTGAT 59.863 47.619 2.29 0.00 0.00 2.57
274 275 2.205074 CGAGCGCCTCTGTATTTGATT 58.795 47.619 2.29 0.00 0.00 2.57
275 276 2.219674 CGAGCGCCTCTGTATTTGATTC 59.780 50.000 2.29 0.00 0.00 2.52
276 277 2.205074 AGCGCCTCTGTATTTGATTCG 58.795 47.619 2.29 0.00 0.00 3.34
277 278 1.333258 GCGCCTCTGTATTTGATTCGC 60.333 52.381 0.00 0.00 0.00 4.70
278 279 1.071239 CGCCTCTGTATTTGATTCGCG 60.071 52.381 0.00 0.00 0.00 5.87
279 280 1.933853 GCCTCTGTATTTGATTCGCGT 59.066 47.619 5.77 0.00 0.00 6.01
280 281 2.033662 GCCTCTGTATTTGATTCGCGTC 60.034 50.000 5.77 0.00 0.00 5.19
281 282 2.540101 CCTCTGTATTTGATTCGCGTCC 59.460 50.000 5.77 0.00 0.00 4.79
282 283 3.448686 CTCTGTATTTGATTCGCGTCCT 58.551 45.455 5.77 0.00 0.00 3.85
283 284 3.857052 TCTGTATTTGATTCGCGTCCTT 58.143 40.909 5.77 0.00 0.00 3.36
284 285 3.863424 TCTGTATTTGATTCGCGTCCTTC 59.137 43.478 5.77 0.00 0.00 3.46
285 286 2.601314 TGTATTTGATTCGCGTCCTTCG 59.399 45.455 5.77 0.00 43.12 3.79
286 287 2.004583 ATTTGATTCGCGTCCTTCGA 57.995 45.000 5.77 0.00 42.86 3.71
291 292 3.030209 TTCGCGTCCTTCGAAGATG 57.970 52.632 26.61 17.13 40.49 2.90
292 293 0.524414 TTCGCGTCCTTCGAAGATGA 59.476 50.000 26.61 13.08 40.49 2.92
293 294 0.524414 TCGCGTCCTTCGAAGATGAA 59.476 50.000 26.61 6.11 42.86 2.57
294 295 0.917259 CGCGTCCTTCGAAGATGAAG 59.083 55.000 26.61 17.62 43.98 3.02
295 296 1.467543 CGCGTCCTTCGAAGATGAAGA 60.468 52.381 26.61 11.59 46.64 2.87
296 297 2.607187 GCGTCCTTCGAAGATGAAGAA 58.393 47.619 26.61 0.15 46.64 2.52
297 298 2.993899 GCGTCCTTCGAAGATGAAGAAA 59.006 45.455 26.61 0.00 46.64 2.52
298 299 3.181529 GCGTCCTTCGAAGATGAAGAAAC 60.182 47.826 26.61 9.50 46.64 2.78
299 300 3.987868 CGTCCTTCGAAGATGAAGAAACA 59.012 43.478 26.61 0.00 46.64 2.83
300 301 4.627467 CGTCCTTCGAAGATGAAGAAACAT 59.373 41.667 26.61 0.00 46.64 2.71
301 302 5.220303 CGTCCTTCGAAGATGAAGAAACATC 60.220 44.000 26.61 0.00 46.64 3.06
302 303 4.864806 TCCTTCGAAGATGAAGAAACATCG 59.135 41.667 26.61 4.45 46.64 3.84
303 304 4.627467 CCTTCGAAGATGAAGAAACATCGT 59.373 41.667 26.61 0.00 46.64 3.73
304 305 5.120830 CCTTCGAAGATGAAGAAACATCGTT 59.879 40.000 26.61 0.00 46.64 3.85
305 306 6.011879 CTTCGAAGATGAAGAAACATCGTTG 58.988 40.000 20.74 0.00 46.64 4.10
306 307 7.365583 CTTCGAAGATGAAGAAACATCGTTGC 61.366 42.308 20.74 0.00 46.64 4.17
307 308 9.609339 CTTCGAAGATGAAGAAACATCGTTGCA 62.609 40.741 20.74 0.00 46.64 4.08
310 311 4.787598 GATGAAGAAACATCGTTGCAACT 58.212 39.130 26.09 7.25 37.50 3.16
311 312 3.951306 TGAAGAAACATCGTTGCAACTG 58.049 40.909 26.09 20.33 0.00 3.16
312 313 3.625313 TGAAGAAACATCGTTGCAACTGA 59.375 39.130 26.09 23.07 0.00 3.41
313 314 3.885484 AGAAACATCGTTGCAACTGAG 57.115 42.857 26.09 17.05 0.00 3.35
314 315 3.206150 AGAAACATCGTTGCAACTGAGT 58.794 40.909 26.09 17.65 0.00 3.41
315 316 3.248602 AGAAACATCGTTGCAACTGAGTC 59.751 43.478 26.09 18.45 0.00 3.36
316 317 1.139989 ACATCGTTGCAACTGAGTCG 58.860 50.000 26.09 12.83 0.00 4.18
317 318 1.269569 ACATCGTTGCAACTGAGTCGA 60.270 47.619 26.09 17.63 0.00 4.20
318 319 1.792367 CATCGTTGCAACTGAGTCGAA 59.208 47.619 26.09 4.70 0.00 3.71
319 320 1.487482 TCGTTGCAACTGAGTCGAAG 58.513 50.000 26.09 8.35 0.00 3.79
320 321 1.202371 TCGTTGCAACTGAGTCGAAGT 60.202 47.619 26.09 0.00 0.00 3.01
321 322 1.593006 CGTTGCAACTGAGTCGAAGTT 59.407 47.619 26.09 0.00 38.40 2.66
326 327 2.748605 CAACTGAGTCGAAGTTGCTCT 58.251 47.619 13.84 0.00 45.68 4.09
327 328 3.902150 CAACTGAGTCGAAGTTGCTCTA 58.098 45.455 13.84 0.00 45.68 2.43
328 329 4.299155 CAACTGAGTCGAAGTTGCTCTAA 58.701 43.478 13.84 0.00 45.68 2.10
329 330 4.792521 ACTGAGTCGAAGTTGCTCTAAT 57.207 40.909 0.00 0.00 0.00 1.73
330 331 4.739195 ACTGAGTCGAAGTTGCTCTAATC 58.261 43.478 0.00 0.00 0.00 1.75
331 332 4.461081 ACTGAGTCGAAGTTGCTCTAATCT 59.539 41.667 0.00 0.00 0.00 2.40
332 333 4.987832 TGAGTCGAAGTTGCTCTAATCTC 58.012 43.478 0.00 0.00 0.00 2.75
333 334 4.142359 TGAGTCGAAGTTGCTCTAATCTCC 60.142 45.833 0.00 0.00 0.00 3.71
334 335 4.020543 AGTCGAAGTTGCTCTAATCTCCT 58.979 43.478 0.00 0.00 0.00 3.69
335 336 4.464597 AGTCGAAGTTGCTCTAATCTCCTT 59.535 41.667 0.00 0.00 0.00 3.36
336 337 5.046950 AGTCGAAGTTGCTCTAATCTCCTTT 60.047 40.000 0.00 0.00 0.00 3.11
337 338 6.153000 AGTCGAAGTTGCTCTAATCTCCTTTA 59.847 38.462 0.00 0.00 0.00 1.85
338 339 6.981559 GTCGAAGTTGCTCTAATCTCCTTTAT 59.018 38.462 0.00 0.00 0.00 1.40
339 340 7.492994 GTCGAAGTTGCTCTAATCTCCTTTATT 59.507 37.037 0.00 0.00 0.00 1.40
340 341 8.692710 TCGAAGTTGCTCTAATCTCCTTTATTA 58.307 33.333 0.00 0.00 0.00 0.98
341 342 9.482627 CGAAGTTGCTCTAATCTCCTTTATTAT 57.517 33.333 0.00 0.00 0.00 1.28
347 348 9.712305 TGCTCTAATCTCCTTTATTATACTTGC 57.288 33.333 0.00 0.00 0.00 4.01
348 349 9.712305 GCTCTAATCTCCTTTATTATACTTGCA 57.288 33.333 0.00 0.00 0.00 4.08
356 357 9.331282 CTCCTTTATTATACTTGCATATAGCCC 57.669 37.037 0.00 0.00 44.83 5.19
357 358 9.057911 TCCTTTATTATACTTGCATATAGCCCT 57.942 33.333 0.00 0.00 44.83 5.19
358 359 9.331282 CCTTTATTATACTTGCATATAGCCCTC 57.669 37.037 0.00 0.00 44.83 4.30
359 360 9.331282 CTTTATTATACTTGCATATAGCCCTCC 57.669 37.037 0.00 0.00 44.83 4.30
360 361 6.891306 ATTATACTTGCATATAGCCCTCCA 57.109 37.500 0.00 0.00 44.83 3.86
361 362 4.833478 ATACTTGCATATAGCCCTCCAG 57.167 45.455 0.00 0.00 44.83 3.86
362 363 2.412591 ACTTGCATATAGCCCTCCAGT 58.587 47.619 0.00 0.00 44.83 4.00
363 364 2.105477 ACTTGCATATAGCCCTCCAGTG 59.895 50.000 0.00 0.00 44.83 3.66
364 365 1.806496 TGCATATAGCCCTCCAGTGT 58.194 50.000 0.00 0.00 44.83 3.55
365 366 1.694150 TGCATATAGCCCTCCAGTGTC 59.306 52.381 0.00 0.00 44.83 3.67
366 367 1.694150 GCATATAGCCCTCCAGTGTCA 59.306 52.381 0.00 0.00 37.23 3.58
367 368 2.104792 GCATATAGCCCTCCAGTGTCAA 59.895 50.000 0.00 0.00 37.23 3.18
368 369 3.433598 GCATATAGCCCTCCAGTGTCAAA 60.434 47.826 0.00 0.00 37.23 2.69
369 370 4.747931 GCATATAGCCCTCCAGTGTCAAAT 60.748 45.833 0.00 0.00 37.23 2.32
370 371 5.380043 CATATAGCCCTCCAGTGTCAAATT 58.620 41.667 0.00 0.00 0.00 1.82
371 372 1.915141 AGCCCTCCAGTGTCAAATTG 58.085 50.000 0.00 0.00 0.00 2.32
372 373 1.425066 AGCCCTCCAGTGTCAAATTGA 59.575 47.619 0.00 0.00 0.00 2.57
373 374 2.158475 AGCCCTCCAGTGTCAAATTGAA 60.158 45.455 0.00 0.00 0.00 2.69
374 375 2.029918 GCCCTCCAGTGTCAAATTGAAC 60.030 50.000 0.00 0.00 0.00 3.18
375 376 2.558359 CCCTCCAGTGTCAAATTGAACC 59.442 50.000 0.00 0.00 0.00 3.62
376 377 2.558359 CCTCCAGTGTCAAATTGAACCC 59.442 50.000 0.00 0.00 0.00 4.11
377 378 3.221771 CTCCAGTGTCAAATTGAACCCA 58.778 45.455 0.00 0.00 0.00 4.51
378 379 2.955660 TCCAGTGTCAAATTGAACCCAC 59.044 45.455 0.00 2.16 0.00 4.61
379 380 2.287547 CCAGTGTCAAATTGAACCCACG 60.288 50.000 0.00 0.00 29.52 4.94
380 381 2.616376 CAGTGTCAAATTGAACCCACGA 59.384 45.455 0.00 0.00 29.52 4.35
381 382 3.253188 CAGTGTCAAATTGAACCCACGAT 59.747 43.478 0.00 0.00 29.52 3.73
382 383 4.454161 CAGTGTCAAATTGAACCCACGATA 59.546 41.667 0.00 0.00 29.52 2.92
383 384 5.123820 CAGTGTCAAATTGAACCCACGATAT 59.876 40.000 0.00 0.00 29.52 1.63
384 385 5.710099 AGTGTCAAATTGAACCCACGATATT 59.290 36.000 0.00 0.00 29.52 1.28
385 386 6.027749 GTGTCAAATTGAACCCACGATATTC 58.972 40.000 0.00 0.00 0.00 1.75
386 387 5.707764 TGTCAAATTGAACCCACGATATTCA 59.292 36.000 0.00 0.00 0.00 2.57
387 388 6.027749 GTCAAATTGAACCCACGATATTCAC 58.972 40.000 0.00 0.00 32.21 3.18
388 389 4.875544 AATTGAACCCACGATATTCACG 57.124 40.909 0.00 0.00 32.21 4.35
389 390 3.596310 TTGAACCCACGATATTCACGA 57.404 42.857 0.00 0.00 32.21 4.35
390 391 3.812156 TGAACCCACGATATTCACGAT 57.188 42.857 0.00 0.00 34.70 3.73
391 392 4.922471 TGAACCCACGATATTCACGATA 57.078 40.909 0.00 0.00 34.70 2.92
392 393 4.866921 TGAACCCACGATATTCACGATAG 58.133 43.478 0.00 0.00 46.19 2.08
410 411 6.363577 CGATAGTACTGTAGTTTTACGGGA 57.636 41.667 5.39 0.00 39.94 5.14
411 412 6.785191 CGATAGTACTGTAGTTTTACGGGAA 58.215 40.000 5.39 0.00 39.94 3.97
412 413 6.688813 CGATAGTACTGTAGTTTTACGGGAAC 59.311 42.308 5.39 0.00 39.94 3.62
427 428 3.604875 GGGAACGGTGAACTATCTCAA 57.395 47.619 0.00 0.00 0.00 3.02
428 429 3.934068 GGGAACGGTGAACTATCTCAAA 58.066 45.455 0.00 0.00 0.00 2.69
429 430 4.320870 GGGAACGGTGAACTATCTCAAAA 58.679 43.478 0.00 0.00 0.00 2.44
430 431 4.758165 GGGAACGGTGAACTATCTCAAAAA 59.242 41.667 0.00 0.00 0.00 1.94
431 432 5.334646 GGGAACGGTGAACTATCTCAAAAAC 60.335 44.000 0.00 0.00 0.00 2.43
432 433 5.237779 GGAACGGTGAACTATCTCAAAAACA 59.762 40.000 0.00 0.00 0.00 2.83
433 434 6.238538 GGAACGGTGAACTATCTCAAAAACAA 60.239 38.462 0.00 0.00 0.00 2.83
434 435 6.056428 ACGGTGAACTATCTCAAAAACAAC 57.944 37.500 0.00 0.00 0.00 3.32
435 436 5.137403 CGGTGAACTATCTCAAAAACAACG 58.863 41.667 0.00 0.00 0.00 4.10
436 437 5.050634 CGGTGAACTATCTCAAAAACAACGA 60.051 40.000 0.00 0.00 39.09 3.85
437 438 6.510478 CGGTGAACTATCTCAAAAACAACGAA 60.510 38.462 0.00 0.00 39.09 3.85
438 439 6.851330 GGTGAACTATCTCAAAAACAACGAAG 59.149 38.462 0.00 0.00 0.00 3.79
439 440 6.851330 GTGAACTATCTCAAAAACAACGAAGG 59.149 38.462 0.00 0.00 0.00 3.46
440 441 6.540914 TGAACTATCTCAAAAACAACGAAGGT 59.459 34.615 0.00 0.00 0.00 3.50
441 442 6.300354 ACTATCTCAAAAACAACGAAGGTG 57.700 37.500 0.00 0.00 0.00 4.00
442 443 5.820947 ACTATCTCAAAAACAACGAAGGTGT 59.179 36.000 0.00 0.00 0.00 4.16
443 444 5.576447 ATCTCAAAAACAACGAAGGTGTT 57.424 34.783 0.00 0.00 0.00 3.32
444 445 4.976987 TCTCAAAAACAACGAAGGTGTTC 58.023 39.130 3.80 0.00 0.00 3.18
445 446 4.099380 TCAAAAACAACGAAGGTGTTCC 57.901 40.909 3.80 0.00 0.00 3.62
446 447 2.836479 AAAACAACGAAGGTGTTCCG 57.164 45.000 3.80 0.00 39.05 4.30
447 448 1.741528 AAACAACGAAGGTGTTCCGT 58.258 45.000 3.80 0.00 39.05 4.69
448 449 2.600470 AACAACGAAGGTGTTCCGTA 57.400 45.000 0.00 0.00 39.05 4.02
449 450 2.600470 ACAACGAAGGTGTTCCGTAA 57.400 45.000 0.00 0.00 39.05 3.18
450 451 2.204237 ACAACGAAGGTGTTCCGTAAC 58.796 47.619 0.00 0.00 39.05 2.50
451 452 1.190763 CAACGAAGGTGTTCCGTAACG 59.809 52.381 0.00 0.00 38.53 3.18
452 453 0.667993 ACGAAGGTGTTCCGTAACGA 59.332 50.000 0.00 0.00 38.53 3.85
453 454 1.270550 ACGAAGGTGTTCCGTAACGAT 59.729 47.619 0.00 0.00 38.53 3.73
454 455 1.916000 CGAAGGTGTTCCGTAACGATC 59.084 52.381 0.00 0.00 38.53 3.69
455 456 2.415090 CGAAGGTGTTCCGTAACGATCT 60.415 50.000 0.00 0.00 38.53 2.75
456 457 3.181507 CGAAGGTGTTCCGTAACGATCTA 60.182 47.826 0.00 0.00 38.53 1.98
457 458 3.772060 AGGTGTTCCGTAACGATCTAC 57.228 47.619 0.00 0.00 38.53 2.59
458 459 2.096496 AGGTGTTCCGTAACGATCTACG 59.904 50.000 7.38 7.38 43.40 3.51
460 461 5.156001 AGGTGTTCCGTAACGATCTACGTA 61.156 45.833 12.03 0.00 46.11 3.57
461 462 6.427704 AGGTGTTCCGTAACGATCTACGTAT 61.428 44.000 12.03 0.00 46.11 3.06
462 463 7.179872 AGGTGTTCCGTAACGATCTACGTATA 61.180 42.308 12.03 0.00 46.11 1.47
463 464 8.432006 AGGTGTTCCGTAACGATCTACGTATAT 61.432 40.741 12.03 0.00 46.11 0.86
509 510 4.461992 TTTTGTTCCGAAACGATCTGAC 57.538 40.909 0.00 0.00 38.28 3.51
510 511 2.804697 TGTTCCGAAACGATCTGACA 57.195 45.000 0.00 0.00 38.28 3.58
511 512 3.100658 TGTTCCGAAACGATCTGACAA 57.899 42.857 0.00 0.00 38.28 3.18
512 513 3.659786 TGTTCCGAAACGATCTGACAAT 58.340 40.909 0.00 0.00 38.28 2.71
513 514 4.811908 TGTTCCGAAACGATCTGACAATA 58.188 39.130 0.00 0.00 38.28 1.90
514 515 5.231702 TGTTCCGAAACGATCTGACAATAA 58.768 37.500 0.00 0.00 38.28 1.40
515 516 5.347635 TGTTCCGAAACGATCTGACAATAAG 59.652 40.000 0.00 0.00 38.28 1.73
516 517 4.430007 TCCGAAACGATCTGACAATAAGG 58.570 43.478 0.00 0.00 0.00 2.69
517 518 3.001330 CCGAAACGATCTGACAATAAGGC 59.999 47.826 0.00 0.00 0.00 4.35
518 519 3.301835 CGAAACGATCTGACAATAAGGCG 60.302 47.826 0.00 0.00 0.00 5.52
519 520 2.961526 ACGATCTGACAATAAGGCGT 57.038 45.000 0.00 0.00 0.00 5.68
520 521 3.247006 ACGATCTGACAATAAGGCGTT 57.753 42.857 0.00 0.00 0.00 4.84
521 522 3.187700 ACGATCTGACAATAAGGCGTTC 58.812 45.455 0.00 0.00 0.00 3.95
522 523 3.119101 ACGATCTGACAATAAGGCGTTCT 60.119 43.478 0.00 0.00 0.00 3.01
583 599 1.392710 CCCTCTTCTCGTATGCCGGT 61.393 60.000 1.90 0.00 37.11 5.28
585 601 0.317103 CTCTTCTCGTATGCCGGTCG 60.317 60.000 1.90 3.66 37.11 4.79
1067 1163 2.284699 CAGGGGAGGGAGGTTCGT 60.285 66.667 0.00 0.00 0.00 3.85
1198 1294 1.961277 CACGGGTGGTGTCTCAAGC 60.961 63.158 0.00 0.00 41.89 4.01
1201 1297 3.050275 GGTGGTGTCTCAAGCGGC 61.050 66.667 0.00 0.00 0.00 6.53
1237 1333 2.489329 CTCATCGTTGGGAATGCTTTGT 59.511 45.455 0.00 0.00 0.00 2.83
1267 1363 0.937304 TGTCAAGTGCGAGAAGTTGC 59.063 50.000 0.00 0.00 31.68 4.17
1296 1392 2.030562 CGGGTGTTCGACAGGCTT 59.969 61.111 0.00 0.00 0.00 4.35
1359 1455 2.282040 GTGCACTGCAGGCTTCCT 60.282 61.111 19.93 0.00 40.08 3.36
1521 1617 1.496060 AAGGCATCGAGTGGGATGTA 58.504 50.000 4.67 0.00 44.47 2.29
1771 1867 0.102844 CCACACAGGTTTGGTGCAAG 59.897 55.000 0.00 0.00 39.87 4.01
1800 1896 6.630071 CCTCGGGTTGTTTAATTTGATGAAT 58.370 36.000 0.00 0.00 0.00 2.57
2008 2104 4.411540 AGATTCTAAGGCATGTCCATGAGT 59.588 41.667 11.35 0.00 41.20 3.41
2029 2125 1.079438 GAGTCCTCTGGGAGTGGGT 59.921 63.158 0.00 0.00 44.70 4.51
2108 2204 0.681733 GTGAGAGGGCTGTTGAGTGA 59.318 55.000 0.00 0.00 0.00 3.41
2217 2313 3.801698 AGATATGGATGCGATATGTGCC 58.198 45.455 0.00 0.00 0.00 5.01
2218 2314 2.008752 TATGGATGCGATATGTGCCG 57.991 50.000 0.00 0.00 0.00 5.69
2255 2351 6.913873 AATGAAGCAAATACATTTGGATGC 57.086 33.333 14.73 3.18 45.44 3.91
2257 2353 4.082300 TGAAGCAAATACATTTGGATGCGT 60.082 37.500 14.73 1.62 45.44 5.24
2273 2369 1.810151 TGCGTTGTAATTCTTCAGGCC 59.190 47.619 0.00 0.00 0.00 5.19
2376 2472 9.277783 GATATCAACTTTAGGTAGTCATTGCAT 57.722 33.333 0.00 0.00 0.00 3.96
2378 2474 7.843490 TCAACTTTAGGTAGTCATTGCATAC 57.157 36.000 0.00 0.00 0.00 2.39
2419 2515 3.703001 ACCTATTTCTGTGGGTGAGTG 57.297 47.619 0.00 0.00 0.00 3.51
2429 2525 0.692476 TGGGTGAGTGGGTGATCAAG 59.308 55.000 0.00 0.00 0.00 3.02
2444 2540 5.946377 GGTGATCAAGTCTAACCTTGGAATT 59.054 40.000 0.00 0.00 41.72 2.17
2489 2585 4.027572 TGTTTGTTGCTCTTGTGCTTAC 57.972 40.909 0.00 0.00 0.00 2.34
2558 2654 6.992063 AAGTTAGCCAGACATGATTAACAG 57.008 37.500 0.00 0.00 32.23 3.16
2592 2689 1.973812 GTTGGGTGCCTCTTGGAGC 60.974 63.158 0.00 0.00 34.57 4.70
2593 2690 3.210012 TTGGGTGCCTCTTGGAGCC 62.210 63.158 0.00 0.00 34.57 4.70
2632 2736 7.092079 TGAACATGATTGATGGTGAATTTCAC 58.908 34.615 19.17 19.17 46.23 3.18
2678 2783 2.258109 GGACTCTGACCCTTACAAGGT 58.742 52.381 7.23 0.00 44.98 3.50
2690 2795 3.502211 CCTTACAAGGTACTGGCACAAAG 59.498 47.826 0.00 0.00 40.86 2.77
2768 2873 8.449397 CCTTTTAACATCAGATTGAGTTGAGAG 58.551 37.037 0.00 0.00 0.00 3.20
2770 2875 8.908786 TTTAACATCAGATTGAGTTGAGAGTT 57.091 30.769 0.00 0.00 33.21 3.01
2772 2877 6.106648 ACATCAGATTGAGTTGAGAGTTGA 57.893 37.500 0.00 0.00 0.00 3.18
2773 2878 6.164876 ACATCAGATTGAGTTGAGAGTTGAG 58.835 40.000 0.00 0.00 0.00 3.02
2774 2879 6.014755 ACATCAGATTGAGTTGAGAGTTGAGA 60.015 38.462 0.00 0.00 0.00 3.27
2775 2880 5.777802 TCAGATTGAGTTGAGAGTTGAGAC 58.222 41.667 0.00 0.00 0.00 3.36
2776 2881 5.538053 TCAGATTGAGTTGAGAGTTGAGACT 59.462 40.000 0.00 0.00 39.32 3.24
2777 2882 5.634439 CAGATTGAGTTGAGAGTTGAGACTG 59.366 44.000 0.00 0.00 35.88 3.51
2778 2883 4.327982 TTGAGTTGAGAGTTGAGACTGG 57.672 45.455 0.00 0.00 35.88 4.00
2780 2885 4.470602 TGAGTTGAGAGTTGAGACTGGTA 58.529 43.478 0.00 0.00 35.88 3.25
2781 2886 4.520874 TGAGTTGAGAGTTGAGACTGGTAG 59.479 45.833 0.00 0.00 35.88 3.18
2806 2920 1.522355 GCGCCAAGAGCTATGCAGA 60.522 57.895 0.00 0.00 40.39 4.26
2807 2921 1.497223 GCGCCAAGAGCTATGCAGAG 61.497 60.000 3.34 3.34 40.39 3.35
2808 2922 1.497223 CGCCAAGAGCTATGCAGAGC 61.497 60.000 25.57 25.57 43.19 4.09
2846 2967 7.066525 GCCTTGTAAACATGCCTGTTATTAGTA 59.933 37.037 7.84 0.00 44.83 1.82
2993 3116 2.684881 CAGGGACAGTTGTTGGATATGC 59.315 50.000 0.00 0.00 0.00 3.14
3094 3220 4.202419 ACCCTGTTTAGTACTTGCATGACA 60.202 41.667 0.00 0.00 0.00 3.58
3095 3221 4.154195 CCCTGTTTAGTACTTGCATGACAC 59.846 45.833 0.00 4.08 0.00 3.67
3107 3233 7.145932 ACTTGCATGACACTAGTTAAATTCC 57.854 36.000 6.60 0.00 0.00 3.01
3124 3250 4.870021 ATTCCTTCTGAAAGCACCCTAT 57.130 40.909 0.00 0.00 36.33 2.57
3125 3251 4.657814 TTCCTTCTGAAAGCACCCTATT 57.342 40.909 0.00 0.00 0.00 1.73
3126 3252 4.657814 TCCTTCTGAAAGCACCCTATTT 57.342 40.909 0.00 0.00 0.00 1.40
3127 3253 5.772393 TCCTTCTGAAAGCACCCTATTTA 57.228 39.130 0.00 0.00 0.00 1.40
3143 3269 7.931407 CACCCTATTTAGTACTTGCATACATGA 59.069 37.037 0.00 0.00 0.00 3.07
3211 3337 1.523154 TTGCTTTGCGATGTGGACCC 61.523 55.000 0.00 0.00 0.00 4.46
3219 3345 1.940613 GCGATGTGGACCCTGTTTATC 59.059 52.381 0.00 0.00 0.00 1.75
3228 3354 4.254492 GGACCCTGTTTATCTTCTCACAC 58.746 47.826 0.00 0.00 0.00 3.82
3247 3373 5.063880 CACACTTTAGTTAAACCTCCTGCT 58.936 41.667 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.741228 GCCCATTGCTGTTGTTTCACAA 60.741 45.455 0.00 0.00 34.46 3.33
2 3 1.202510 GCCCATTGCTGTTGTTTCACA 60.203 47.619 0.00 0.00 36.87 3.58
3 4 1.501169 GCCCATTGCTGTTGTTTCAC 58.499 50.000 0.00 0.00 36.87 3.18
4 5 0.031857 CGCCCATTGCTGTTGTTTCA 59.968 50.000 0.00 0.00 38.05 2.69
5 6 0.667184 CCGCCCATTGCTGTTGTTTC 60.667 55.000 0.00 0.00 38.05 2.78
6 7 1.367102 CCGCCCATTGCTGTTGTTT 59.633 52.632 0.00 0.00 38.05 2.83
7 8 3.050339 CCGCCCATTGCTGTTGTT 58.950 55.556 0.00 0.00 38.05 2.83
8 9 3.683937 GCCGCCCATTGCTGTTGT 61.684 61.111 0.00 0.00 38.05 3.32
9 10 4.440127 GGCCGCCCATTGCTGTTG 62.440 66.667 0.00 0.00 38.05 3.33
10 11 4.684134 AGGCCGCCCATTGCTGTT 62.684 61.111 5.55 0.00 38.05 3.16
13 14 4.133373 ATGAGGCCGCCCATTGCT 62.133 61.111 5.55 0.00 38.05 3.91
14 15 3.599704 GATGAGGCCGCCCATTGC 61.600 66.667 5.55 0.00 0.00 3.56
15 16 1.321805 TTTGATGAGGCCGCCCATTG 61.322 55.000 5.55 0.00 0.00 2.82
16 17 0.397535 ATTTGATGAGGCCGCCCATT 60.398 50.000 5.55 0.00 0.00 3.16
17 18 0.478072 TATTTGATGAGGCCGCCCAT 59.522 50.000 5.55 9.41 0.00 4.00
18 19 0.478072 ATATTTGATGAGGCCGCCCA 59.522 50.000 5.55 4.29 0.00 5.36
19 20 2.359900 CTATATTTGATGAGGCCGCCC 58.640 52.381 5.55 0.00 0.00 6.13
20 21 2.290323 ACCTATATTTGATGAGGCCGCC 60.290 50.000 3.22 0.00 31.81 6.13
21 22 3.003480 GACCTATATTTGATGAGGCCGC 58.997 50.000 0.00 0.00 31.81 6.53
22 23 4.499183 GAGACCTATATTTGATGAGGCCG 58.501 47.826 0.00 0.00 31.81 6.13
23 24 4.021016 ACGAGACCTATATTTGATGAGGCC 60.021 45.833 0.00 0.00 31.81 5.19
24 25 5.140747 ACGAGACCTATATTTGATGAGGC 57.859 43.478 0.00 0.00 31.81 4.70
25 26 9.712305 ATAAAACGAGACCTATATTTGATGAGG 57.288 33.333 0.00 0.00 35.05 3.86
32 33 9.326413 CCAGACAATAAAACGAGACCTATATTT 57.674 33.333 0.00 0.00 0.00 1.40
33 34 8.701895 TCCAGACAATAAAACGAGACCTATATT 58.298 33.333 0.00 0.00 0.00 1.28
34 35 8.246430 TCCAGACAATAAAACGAGACCTATAT 57.754 34.615 0.00 0.00 0.00 0.86
35 36 7.649533 TCCAGACAATAAAACGAGACCTATA 57.350 36.000 0.00 0.00 0.00 1.31
36 37 6.540438 TCCAGACAATAAAACGAGACCTAT 57.460 37.500 0.00 0.00 0.00 2.57
37 38 5.988310 TCCAGACAATAAAACGAGACCTA 57.012 39.130 0.00 0.00 0.00 3.08
38 39 4.884668 TCCAGACAATAAAACGAGACCT 57.115 40.909 0.00 0.00 0.00 3.85
39 40 5.163754 CCATTCCAGACAATAAAACGAGACC 60.164 44.000 0.00 0.00 0.00 3.85
40 41 5.642063 TCCATTCCAGACAATAAAACGAGAC 59.358 40.000 0.00 0.00 0.00 3.36
41 42 5.800296 TCCATTCCAGACAATAAAACGAGA 58.200 37.500 0.00 0.00 0.00 4.04
42 43 5.643777 ACTCCATTCCAGACAATAAAACGAG 59.356 40.000 0.00 0.00 0.00 4.18
43 44 5.556915 ACTCCATTCCAGACAATAAAACGA 58.443 37.500 0.00 0.00 0.00 3.85
44 45 5.880054 ACTCCATTCCAGACAATAAAACG 57.120 39.130 0.00 0.00 0.00 3.60
47 48 8.966868 GGAAAATACTCCATTCCAGACAATAAA 58.033 33.333 0.00 0.00 41.80 1.40
48 49 8.112822 TGGAAAATACTCCATTCCAGACAATAA 58.887 33.333 2.48 0.00 45.71 1.40
49 50 7.638444 TGGAAAATACTCCATTCCAGACAATA 58.362 34.615 2.48 0.00 45.71 1.90
50 51 6.493166 TGGAAAATACTCCATTCCAGACAAT 58.507 36.000 2.48 0.00 45.71 2.71
51 52 5.886609 TGGAAAATACTCCATTCCAGACAA 58.113 37.500 2.48 0.00 45.71 3.18
52 53 5.512942 TGGAAAATACTCCATTCCAGACA 57.487 39.130 2.48 0.00 45.71 3.41
57 58 5.685728 AGTAGCTGGAAAATACTCCATTCC 58.314 41.667 0.00 0.00 44.59 3.01
58 59 6.852858 GAGTAGCTGGAAAATACTCCATTC 57.147 41.667 0.00 0.00 44.59 2.67
63 64 5.918608 TGATGGAGTAGCTGGAAAATACTC 58.081 41.667 0.00 0.00 43.00 2.59
64 65 5.426833 ACTGATGGAGTAGCTGGAAAATACT 59.573 40.000 0.00 0.00 30.86 2.12
65 66 5.675538 ACTGATGGAGTAGCTGGAAAATAC 58.324 41.667 0.00 0.00 30.86 1.89
66 67 5.663106 AGACTGATGGAGTAGCTGGAAAATA 59.337 40.000 0.00 0.00 33.83 1.40
67 68 4.472833 AGACTGATGGAGTAGCTGGAAAAT 59.527 41.667 0.00 0.00 33.83 1.82
68 69 3.840666 AGACTGATGGAGTAGCTGGAAAA 59.159 43.478 0.00 0.00 33.83 2.29
69 70 3.445008 AGACTGATGGAGTAGCTGGAAA 58.555 45.455 0.00 0.00 33.83 3.13
70 71 3.107402 AGACTGATGGAGTAGCTGGAA 57.893 47.619 0.00 0.00 33.83 3.53
71 72 2.836636 AGACTGATGGAGTAGCTGGA 57.163 50.000 0.00 0.00 33.83 3.86
72 73 3.826524 TCTAGACTGATGGAGTAGCTGG 58.173 50.000 0.00 0.00 33.83 4.85
73 74 6.472016 TCTATCTAGACTGATGGAGTAGCTG 58.528 44.000 0.00 0.00 33.83 4.24
74 75 6.696042 TCTATCTAGACTGATGGAGTAGCT 57.304 41.667 0.00 0.00 33.83 3.32
75 76 6.374333 CCTTCTATCTAGACTGATGGAGTAGC 59.626 46.154 17.06 0.00 35.81 3.58
76 77 7.458397 ACCTTCTATCTAGACTGATGGAGTAG 58.542 42.308 23.71 9.24 35.81 2.57
77 78 7.395525 ACCTTCTATCTAGACTGATGGAGTA 57.604 40.000 23.71 1.31 35.81 2.59
78 79 6.274322 ACCTTCTATCTAGACTGATGGAGT 57.726 41.667 23.71 9.29 35.81 3.85
79 80 6.884295 CCTACCTTCTATCTAGACTGATGGAG 59.116 46.154 23.71 18.05 35.81 3.86
80 81 6.240321 CCCTACCTTCTATCTAGACTGATGGA 60.240 46.154 23.71 4.87 33.20 3.41
81 82 5.949354 CCCTACCTTCTATCTAGACTGATGG 59.051 48.000 18.93 18.93 30.81 3.51
82 83 5.417580 GCCCTACCTTCTATCTAGACTGATG 59.582 48.000 0.00 0.00 30.81 3.07
83 84 5.314841 AGCCCTACCTTCTATCTAGACTGAT 59.685 44.000 0.00 0.00 30.81 2.90
84 85 4.665957 AGCCCTACCTTCTATCTAGACTGA 59.334 45.833 0.00 0.00 30.81 3.41
85 86 4.764823 CAGCCCTACCTTCTATCTAGACTG 59.235 50.000 0.00 0.00 30.81 3.51
86 87 4.665957 TCAGCCCTACCTTCTATCTAGACT 59.334 45.833 0.00 0.00 30.81 3.24
87 88 4.988029 TCAGCCCTACCTTCTATCTAGAC 58.012 47.826 0.00 0.00 30.81 2.59
88 89 5.664815 TTCAGCCCTACCTTCTATCTAGA 57.335 43.478 0.00 0.00 0.00 2.43
89 90 6.926630 ATTTCAGCCCTACCTTCTATCTAG 57.073 41.667 0.00 0.00 0.00 2.43
90 91 7.766628 TCTATTTCAGCCCTACCTTCTATCTA 58.233 38.462 0.00 0.00 0.00 1.98
91 92 6.625267 TCTATTTCAGCCCTACCTTCTATCT 58.375 40.000 0.00 0.00 0.00 1.98
92 93 6.722129 TCTCTATTTCAGCCCTACCTTCTATC 59.278 42.308 0.00 0.00 0.00 2.08
93 94 6.625267 TCTCTATTTCAGCCCTACCTTCTAT 58.375 40.000 0.00 0.00 0.00 1.98
94 95 6.027025 TCTCTATTTCAGCCCTACCTTCTA 57.973 41.667 0.00 0.00 0.00 2.10
95 96 4.884961 TCTCTATTTCAGCCCTACCTTCT 58.115 43.478 0.00 0.00 0.00 2.85
96 97 5.816955 ATCTCTATTTCAGCCCTACCTTC 57.183 43.478 0.00 0.00 0.00 3.46
97 98 6.582929 AAATCTCTATTTCAGCCCTACCTT 57.417 37.500 0.00 0.00 28.88 3.50
98 99 6.582929 AAAATCTCTATTTCAGCCCTACCT 57.417 37.500 0.00 0.00 34.12 3.08
99 100 7.057264 AGAAAAATCTCTATTTCAGCCCTACC 58.943 38.462 0.00 0.00 37.87 3.18
100 101 8.512966 AAGAAAAATCTCTATTTCAGCCCTAC 57.487 34.615 0.00 0.00 37.87 3.18
101 102 9.533831 AAAAGAAAAATCTCTATTTCAGCCCTA 57.466 29.630 0.00 0.00 37.87 3.53
102 103 8.427902 AAAAGAAAAATCTCTATTTCAGCCCT 57.572 30.769 0.00 0.00 37.87 5.19
139 140 9.958180 TTGGACATTGATCAATAAAGAGAAGTA 57.042 29.630 20.32 0.00 0.00 2.24
140 141 8.868522 TTGGACATTGATCAATAAAGAGAAGT 57.131 30.769 20.32 11.43 0.00 3.01
141 142 8.954350 ACTTGGACATTGATCAATAAAGAGAAG 58.046 33.333 20.32 17.29 0.00 2.85
142 143 8.868522 ACTTGGACATTGATCAATAAAGAGAA 57.131 30.769 20.32 8.20 0.00 2.87
143 144 9.383519 GTACTTGGACATTGATCAATAAAGAGA 57.616 33.333 20.32 11.71 0.00 3.10
144 145 9.166173 TGTACTTGGACATTGATCAATAAAGAG 57.834 33.333 20.32 15.57 0.00 2.85
145 146 9.685276 ATGTACTTGGACATTGATCAATAAAGA 57.315 29.630 20.32 3.29 36.64 2.52
146 147 9.726232 CATGTACTTGGACATTGATCAATAAAG 57.274 33.333 20.32 20.19 37.99 1.85
147 148 8.685427 CCATGTACTTGGACATTGATCAATAAA 58.315 33.333 20.32 11.44 37.99 1.40
148 149 7.285172 CCCATGTACTTGGACATTGATCAATAA 59.715 37.037 25.43 10.39 37.99 1.40
149 150 6.772233 CCCATGTACTTGGACATTGATCAATA 59.228 38.462 25.43 2.51 37.99 1.90
150 151 5.595542 CCCATGTACTTGGACATTGATCAAT 59.404 40.000 25.43 15.36 37.99 2.57
151 152 4.949238 CCCATGTACTTGGACATTGATCAA 59.051 41.667 25.43 11.26 37.99 2.57
152 153 4.227073 TCCCATGTACTTGGACATTGATCA 59.773 41.667 25.43 0.00 37.99 2.92
153 154 4.780815 TCCCATGTACTTGGACATTGATC 58.219 43.478 25.43 0.00 37.99 2.92
154 155 4.860802 TCCCATGTACTTGGACATTGAT 57.139 40.909 25.43 0.00 37.99 2.57
155 156 4.649267 TTCCCATGTACTTGGACATTGA 57.351 40.909 25.43 12.88 37.99 2.57
156 157 5.885352 TGTATTCCCATGTACTTGGACATTG 59.115 40.000 25.43 10.99 37.99 2.82
157 158 6.073447 TGTATTCCCATGTACTTGGACATT 57.927 37.500 25.43 12.12 37.99 2.71
158 159 5.708736 TGTATTCCCATGTACTTGGACAT 57.291 39.130 25.43 18.42 40.78 3.06
159 160 5.190726 TCATGTATTCCCATGTACTTGGACA 59.809 40.000 25.43 20.86 42.29 4.02
160 161 5.680619 TCATGTATTCCCATGTACTTGGAC 58.319 41.667 25.43 16.72 42.29 4.02
161 162 5.966853 TCATGTATTCCCATGTACTTGGA 57.033 39.130 25.43 11.20 42.29 3.53
162 163 7.587037 ATTTCATGTATTCCCATGTACTTGG 57.413 36.000 18.69 18.69 42.29 3.61
165 166 9.730705 CTGATATTTCATGTATTCCCATGTACT 57.269 33.333 0.00 0.00 42.29 2.73
166 167 8.950210 CCTGATATTTCATGTATTCCCATGTAC 58.050 37.037 0.00 0.00 42.29 2.90
167 168 8.108999 CCCTGATATTTCATGTATTCCCATGTA 58.891 37.037 0.00 0.00 42.29 2.29
168 169 6.950041 CCCTGATATTTCATGTATTCCCATGT 59.050 38.462 0.00 0.00 42.29 3.21
169 170 6.379133 CCCCTGATATTTCATGTATTCCCATG 59.621 42.308 0.00 0.00 42.89 3.66
170 171 6.496743 CCCCTGATATTTCATGTATTCCCAT 58.503 40.000 0.00 0.00 0.00 4.00
171 172 5.222316 CCCCCTGATATTTCATGTATTCCCA 60.222 44.000 0.00 0.00 0.00 4.37
172 173 5.015178 TCCCCCTGATATTTCATGTATTCCC 59.985 44.000 0.00 0.00 0.00 3.97
173 174 6.139679 TCCCCCTGATATTTCATGTATTCC 57.860 41.667 0.00 0.00 0.00 3.01
174 175 8.655935 AAATCCCCCTGATATTTCATGTATTC 57.344 34.615 0.00 0.00 31.83 1.75
175 176 9.759473 CTAAATCCCCCTGATATTTCATGTATT 57.241 33.333 0.00 0.00 31.83 1.89
176 177 8.339247 CCTAAATCCCCCTGATATTTCATGTAT 58.661 37.037 0.00 0.00 31.83 2.29
177 178 7.519355 TCCTAAATCCCCCTGATATTTCATGTA 59.481 37.037 0.00 0.00 31.83 2.29
178 179 6.335311 TCCTAAATCCCCCTGATATTTCATGT 59.665 38.462 0.00 0.00 31.83 3.21
179 180 6.793478 TCCTAAATCCCCCTGATATTTCATG 58.207 40.000 0.00 0.00 31.83 3.07
180 181 6.524891 GCTCCTAAATCCCCCTGATATTTCAT 60.525 42.308 0.00 0.00 31.83 2.57
181 182 5.222130 GCTCCTAAATCCCCCTGATATTTCA 60.222 44.000 0.00 0.00 31.83 2.69
182 183 5.257262 GCTCCTAAATCCCCCTGATATTTC 58.743 45.833 0.00 0.00 31.83 2.17
183 184 4.044698 GGCTCCTAAATCCCCCTGATATTT 59.955 45.833 0.00 0.00 31.83 1.40
184 185 3.593780 GGCTCCTAAATCCCCCTGATATT 59.406 47.826 0.00 0.00 31.83 1.28
185 186 3.193782 GGCTCCTAAATCCCCCTGATAT 58.806 50.000 0.00 0.00 31.83 1.63
186 187 2.089638 TGGCTCCTAAATCCCCCTGATA 60.090 50.000 0.00 0.00 31.83 2.15
187 188 1.346465 TGGCTCCTAAATCCCCCTGAT 60.346 52.381 0.00 0.00 34.22 2.90
188 189 0.045623 TGGCTCCTAAATCCCCCTGA 59.954 55.000 0.00 0.00 0.00 3.86
189 190 0.183731 GTGGCTCCTAAATCCCCCTG 59.816 60.000 0.00 0.00 0.00 4.45
190 191 0.253630 TGTGGCTCCTAAATCCCCCT 60.254 55.000 0.00 0.00 0.00 4.79
191 192 0.106669 GTGTGGCTCCTAAATCCCCC 60.107 60.000 0.00 0.00 0.00 5.40
192 193 0.623723 TGTGTGGCTCCTAAATCCCC 59.376 55.000 0.00 0.00 0.00 4.81
193 194 2.736670 ATGTGTGGCTCCTAAATCCC 57.263 50.000 0.00 0.00 0.00 3.85
194 195 3.142174 GCTATGTGTGGCTCCTAAATCC 58.858 50.000 0.00 0.00 0.00 3.01
195 196 2.802816 CGCTATGTGTGGCTCCTAAATC 59.197 50.000 0.00 0.00 0.00 2.17
196 197 2.170607 ACGCTATGTGTGGCTCCTAAAT 59.829 45.455 0.00 0.00 0.00 1.40
197 198 1.553248 ACGCTATGTGTGGCTCCTAAA 59.447 47.619 0.00 0.00 0.00 1.85
198 199 1.136305 GACGCTATGTGTGGCTCCTAA 59.864 52.381 0.00 0.00 0.00 2.69
199 200 0.744874 GACGCTATGTGTGGCTCCTA 59.255 55.000 0.00 0.00 0.00 2.94
200 201 1.517832 GACGCTATGTGTGGCTCCT 59.482 57.895 0.00 0.00 0.00 3.69
201 202 1.521681 GGACGCTATGTGTGGCTCC 60.522 63.158 0.00 0.00 33.89 4.70
202 203 0.744874 TAGGACGCTATGTGTGGCTC 59.255 55.000 0.00 0.00 33.89 4.70
203 204 1.191535 TTAGGACGCTATGTGTGGCT 58.808 50.000 0.00 0.00 33.89 4.75
204 205 2.018542 TTTAGGACGCTATGTGTGGC 57.981 50.000 0.00 0.00 0.00 5.01
205 206 2.936498 CCTTTTAGGACGCTATGTGTGG 59.064 50.000 0.00 0.00 37.67 4.17
206 207 3.857052 TCCTTTTAGGACGCTATGTGTG 58.143 45.455 0.00 0.00 40.06 3.82
207 208 3.767673 TCTCCTTTTAGGACGCTATGTGT 59.232 43.478 0.00 0.00 40.06 3.72
208 209 4.113354 GTCTCCTTTTAGGACGCTATGTG 58.887 47.826 0.00 0.00 40.06 3.21
209 210 3.132467 GGTCTCCTTTTAGGACGCTATGT 59.868 47.826 0.00 0.00 40.06 2.29
210 211 3.385111 AGGTCTCCTTTTAGGACGCTATG 59.615 47.826 0.00 0.00 40.06 2.23
211 212 3.644335 AGGTCTCCTTTTAGGACGCTAT 58.356 45.455 0.00 0.00 40.06 2.97
212 213 3.097342 AGGTCTCCTTTTAGGACGCTA 57.903 47.619 0.00 0.00 40.06 4.26
213 214 1.939980 AGGTCTCCTTTTAGGACGCT 58.060 50.000 0.00 0.00 40.06 5.07
214 215 3.881937 TTAGGTCTCCTTTTAGGACGC 57.118 47.619 0.00 0.00 40.06 5.19
215 216 5.402997 ACTTTAGGTCTCCTTTTAGGACG 57.597 43.478 0.00 0.00 40.06 4.79
216 217 7.849160 ACATACTTTAGGTCTCCTTTTAGGAC 58.151 38.462 0.00 0.00 40.06 3.85
217 218 8.445361 AACATACTTTAGGTCTCCTTTTAGGA 57.555 34.615 0.00 0.00 43.43 2.94
220 221 9.662947 GCTAAACATACTTTAGGTCTCCTTTTA 57.337 33.333 0.00 0.00 34.61 1.52
221 222 8.161425 TGCTAAACATACTTTAGGTCTCCTTTT 58.839 33.333 0.00 0.00 34.61 2.27
222 223 7.686434 TGCTAAACATACTTTAGGTCTCCTTT 58.314 34.615 0.00 0.00 34.61 3.11
223 224 7.253905 TGCTAAACATACTTTAGGTCTCCTT 57.746 36.000 0.00 0.00 34.61 3.36
224 225 6.869206 TGCTAAACATACTTTAGGTCTCCT 57.131 37.500 2.81 0.00 37.71 3.69
225 226 6.539103 CCTTGCTAAACATACTTTAGGTCTCC 59.461 42.308 2.81 0.00 33.72 3.71
226 227 6.037281 GCCTTGCTAAACATACTTTAGGTCTC 59.963 42.308 2.81 0.00 33.72 3.36
227 228 5.880887 GCCTTGCTAAACATACTTTAGGTCT 59.119 40.000 2.81 0.00 33.72 3.85
228 229 5.880887 AGCCTTGCTAAACATACTTTAGGTC 59.119 40.000 2.81 0.00 36.99 3.85
229 230 5.816682 AGCCTTGCTAAACATACTTTAGGT 58.183 37.500 2.81 0.00 36.99 3.08
230 231 6.018994 CGTAGCCTTGCTAAACATACTTTAGG 60.019 42.308 0.00 0.00 43.07 2.69
231 232 6.755141 TCGTAGCCTTGCTAAACATACTTTAG 59.245 38.462 0.00 0.00 43.07 1.85
232 233 6.632909 TCGTAGCCTTGCTAAACATACTTTA 58.367 36.000 0.00 0.00 43.07 1.85
233 234 5.484715 TCGTAGCCTTGCTAAACATACTTT 58.515 37.500 0.00 0.00 43.07 2.66
234 235 5.080969 TCGTAGCCTTGCTAAACATACTT 57.919 39.130 0.00 0.00 43.07 2.24
235 236 4.683832 CTCGTAGCCTTGCTAAACATACT 58.316 43.478 0.00 0.00 43.07 2.12
236 237 3.245519 GCTCGTAGCCTTGCTAAACATAC 59.754 47.826 0.00 0.00 43.07 2.39
237 238 3.454375 GCTCGTAGCCTTGCTAAACATA 58.546 45.455 0.00 0.00 43.07 2.29
238 239 2.280628 GCTCGTAGCCTTGCTAAACAT 58.719 47.619 0.00 0.00 43.07 2.71
239 240 1.722011 GCTCGTAGCCTTGCTAAACA 58.278 50.000 0.00 0.00 43.07 2.83
240 241 0.645868 CGCTCGTAGCCTTGCTAAAC 59.354 55.000 0.00 0.00 43.07 2.01
241 242 1.082117 GCGCTCGTAGCCTTGCTAAA 61.082 55.000 0.00 0.00 43.07 1.85
242 243 1.518572 GCGCTCGTAGCCTTGCTAA 60.519 57.895 0.00 0.00 43.07 3.09
243 244 2.104331 GCGCTCGTAGCCTTGCTA 59.896 61.111 0.00 0.00 40.44 3.49
250 251 0.030908 AATACAGAGGCGCTCGTAGC 59.969 55.000 7.64 0.00 38.02 3.58
251 252 2.120232 CAAATACAGAGGCGCTCGTAG 58.880 52.381 7.64 0.00 35.36 3.51
252 253 1.746787 TCAAATACAGAGGCGCTCGTA 59.253 47.619 7.64 9.93 35.36 3.43
253 254 0.530744 TCAAATACAGAGGCGCTCGT 59.469 50.000 7.64 8.18 35.36 4.18
254 255 1.858091 ATCAAATACAGAGGCGCTCG 58.142 50.000 7.64 2.67 35.36 5.03
255 256 2.219674 CGAATCAAATACAGAGGCGCTC 59.780 50.000 7.64 2.67 0.00 5.03
256 257 2.205074 CGAATCAAATACAGAGGCGCT 58.795 47.619 7.64 0.00 0.00 5.92
257 258 1.333258 GCGAATCAAATACAGAGGCGC 60.333 52.381 0.00 0.00 35.47 6.53
258 259 1.071239 CGCGAATCAAATACAGAGGCG 60.071 52.381 0.00 0.00 34.99 5.52
259 260 1.933853 ACGCGAATCAAATACAGAGGC 59.066 47.619 15.93 0.00 0.00 4.70
260 261 2.540101 GGACGCGAATCAAATACAGAGG 59.460 50.000 15.93 0.00 0.00 3.69
261 262 3.448686 AGGACGCGAATCAAATACAGAG 58.551 45.455 15.93 0.00 0.00 3.35
262 263 3.520290 AGGACGCGAATCAAATACAGA 57.480 42.857 15.93 0.00 0.00 3.41
263 264 3.301835 CGAAGGACGCGAATCAAATACAG 60.302 47.826 15.93 0.00 34.51 2.74
264 265 2.601314 CGAAGGACGCGAATCAAATACA 59.399 45.455 15.93 0.00 34.51 2.29
265 266 2.855963 TCGAAGGACGCGAATCAAATAC 59.144 45.455 15.93 0.00 42.26 1.89
266 267 3.153676 TCGAAGGACGCGAATCAAATA 57.846 42.857 15.93 0.00 42.26 1.40
267 268 2.004583 TCGAAGGACGCGAATCAAAT 57.995 45.000 15.93 0.00 42.26 2.32
268 269 1.724623 CTTCGAAGGACGCGAATCAAA 59.275 47.619 15.93 0.00 45.38 2.69
269 270 1.068125 TCTTCGAAGGACGCGAATCAA 60.068 47.619 24.37 0.00 45.38 2.57
270 271 0.524414 TCTTCGAAGGACGCGAATCA 59.476 50.000 24.37 0.00 45.38 2.57
271 272 1.518929 CATCTTCGAAGGACGCGAATC 59.481 52.381 24.37 0.00 45.38 2.52
272 273 1.134367 TCATCTTCGAAGGACGCGAAT 59.866 47.619 24.37 6.39 45.38 3.34
273 274 0.524414 TCATCTTCGAAGGACGCGAA 59.476 50.000 24.37 4.09 44.48 4.70
274 275 0.524414 TTCATCTTCGAAGGACGCGA 59.476 50.000 24.37 11.17 42.26 5.87
275 276 0.917259 CTTCATCTTCGAAGGACGCG 59.083 55.000 24.37 3.53 39.01 6.01
276 277 2.279582 TCTTCATCTTCGAAGGACGC 57.720 50.000 24.37 0.00 42.27 5.19
277 278 3.987868 TGTTTCTTCATCTTCGAAGGACG 59.012 43.478 24.37 12.44 42.27 4.79
278 279 5.220303 CGATGTTTCTTCATCTTCGAAGGAC 60.220 44.000 24.37 10.77 42.27 3.85
279 280 4.864806 CGATGTTTCTTCATCTTCGAAGGA 59.135 41.667 24.37 12.28 42.27 3.36
280 281 4.627467 ACGATGTTTCTTCATCTTCGAAGG 59.373 41.667 24.37 10.04 42.27 3.46
281 282 5.769967 ACGATGTTTCTTCATCTTCGAAG 57.230 39.130 19.35 19.35 43.17 3.79
282 283 5.614668 GCAACGATGTTTCTTCATCTTCGAA 60.615 40.000 0.00 0.00 41.17 3.71
283 284 4.143115 GCAACGATGTTTCTTCATCTTCGA 60.143 41.667 0.00 0.00 41.17 3.71
284 285 4.084507 GCAACGATGTTTCTTCATCTTCG 58.915 43.478 0.00 0.00 41.17 3.79
285 286 5.034554 TGCAACGATGTTTCTTCATCTTC 57.965 39.130 0.00 0.00 41.17 2.87
286 287 5.009010 AGTTGCAACGATGTTTCTTCATCTT 59.991 36.000 23.21 0.00 41.17 2.40
287 288 4.516698 AGTTGCAACGATGTTTCTTCATCT 59.483 37.500 23.21 0.00 41.17 2.90
288 289 4.614284 CAGTTGCAACGATGTTTCTTCATC 59.386 41.667 23.21 0.00 40.29 2.92
289 290 4.275689 TCAGTTGCAACGATGTTTCTTCAT 59.724 37.500 23.21 0.00 0.00 2.57
290 291 3.625313 TCAGTTGCAACGATGTTTCTTCA 59.375 39.130 23.21 0.00 0.00 3.02
291 292 4.209452 TCAGTTGCAACGATGTTTCTTC 57.791 40.909 23.21 0.00 0.00 2.87
292 293 3.627577 ACTCAGTTGCAACGATGTTTCTT 59.372 39.130 23.21 0.00 0.00 2.52
293 294 3.206150 ACTCAGTTGCAACGATGTTTCT 58.794 40.909 23.21 0.64 0.00 2.52
294 295 3.545633 GACTCAGTTGCAACGATGTTTC 58.454 45.455 23.21 13.22 0.00 2.78
295 296 2.032894 CGACTCAGTTGCAACGATGTTT 60.033 45.455 23.21 8.85 0.00 2.83
296 297 1.526887 CGACTCAGTTGCAACGATGTT 59.473 47.619 23.21 8.54 0.00 2.71
297 298 1.139989 CGACTCAGTTGCAACGATGT 58.860 50.000 23.21 20.73 0.00 3.06
298 299 1.418373 TCGACTCAGTTGCAACGATG 58.582 50.000 23.21 17.01 0.00 3.84
299 300 2.061773 CTTCGACTCAGTTGCAACGAT 58.938 47.619 23.21 10.45 0.00 3.73
300 301 1.202371 ACTTCGACTCAGTTGCAACGA 60.202 47.619 23.21 20.45 0.00 3.85
301 302 1.209128 ACTTCGACTCAGTTGCAACG 58.791 50.000 23.21 17.58 0.00 4.10
302 303 2.974165 CAACTTCGACTCAGTTGCAAC 58.026 47.619 22.17 22.17 43.48 4.17
307 308 4.585955 TTAGAGCAACTTCGACTCAGTT 57.414 40.909 3.20 0.00 34.67 3.16
308 309 4.461081 AGATTAGAGCAACTTCGACTCAGT 59.539 41.667 3.20 0.00 32.71 3.41
309 310 4.992688 AGATTAGAGCAACTTCGACTCAG 58.007 43.478 3.20 0.00 32.71 3.35
310 311 4.142359 GGAGATTAGAGCAACTTCGACTCA 60.142 45.833 3.20 0.00 32.71 3.41
311 312 4.097286 AGGAGATTAGAGCAACTTCGACTC 59.903 45.833 0.00 0.00 0.00 3.36
312 313 4.020543 AGGAGATTAGAGCAACTTCGACT 58.979 43.478 0.00 0.00 0.00 4.18
313 314 4.379339 AGGAGATTAGAGCAACTTCGAC 57.621 45.455 0.00 0.00 0.00 4.20
314 315 5.407407 AAAGGAGATTAGAGCAACTTCGA 57.593 39.130 0.00 0.00 0.00 3.71
315 316 7.778470 AATAAAGGAGATTAGAGCAACTTCG 57.222 36.000 0.00 0.00 0.00 3.79
321 322 9.712305 GCAAGTATAATAAAGGAGATTAGAGCA 57.288 33.333 0.00 0.00 0.00 4.26
322 323 9.712305 TGCAAGTATAATAAAGGAGATTAGAGC 57.288 33.333 0.00 0.00 0.00 4.09
330 331 9.331282 GGGCTATATGCAAGTATAATAAAGGAG 57.669 37.037 0.00 0.00 45.15 3.69
331 332 9.057911 AGGGCTATATGCAAGTATAATAAAGGA 57.942 33.333 0.00 0.00 45.15 3.36
332 333 9.331282 GAGGGCTATATGCAAGTATAATAAAGG 57.669 37.037 0.00 0.00 45.15 3.11
333 334 9.331282 GGAGGGCTATATGCAAGTATAATAAAG 57.669 37.037 0.00 0.00 45.15 1.85
334 335 8.831738 TGGAGGGCTATATGCAAGTATAATAAA 58.168 33.333 0.00 0.00 45.15 1.40
335 336 8.387333 TGGAGGGCTATATGCAAGTATAATAA 57.613 34.615 0.00 0.00 45.15 1.40
336 337 7.623677 ACTGGAGGGCTATATGCAAGTATAATA 59.376 37.037 0.00 0.00 45.15 0.98
337 338 6.445139 ACTGGAGGGCTATATGCAAGTATAAT 59.555 38.462 0.00 0.00 45.15 1.28
338 339 5.785423 ACTGGAGGGCTATATGCAAGTATAA 59.215 40.000 0.00 0.00 45.15 0.98
339 340 5.187772 CACTGGAGGGCTATATGCAAGTATA 59.812 44.000 0.00 0.00 45.15 1.47
340 341 4.019860 CACTGGAGGGCTATATGCAAGTAT 60.020 45.833 0.00 0.00 45.15 2.12
341 342 3.324846 CACTGGAGGGCTATATGCAAGTA 59.675 47.826 0.00 0.00 45.15 2.24
342 343 2.105477 CACTGGAGGGCTATATGCAAGT 59.895 50.000 0.00 0.00 45.15 3.16
343 344 2.105477 ACACTGGAGGGCTATATGCAAG 59.895 50.000 0.00 0.00 45.15 4.01
344 345 2.104792 GACACTGGAGGGCTATATGCAA 59.895 50.000 0.00 0.00 45.15 4.08
345 346 1.694150 GACACTGGAGGGCTATATGCA 59.306 52.381 0.00 0.00 45.15 3.96
346 347 1.694150 TGACACTGGAGGGCTATATGC 59.306 52.381 0.00 0.00 41.94 3.14
347 348 4.422073 TTTGACACTGGAGGGCTATATG 57.578 45.455 0.00 0.00 0.00 1.78
348 349 5.132648 TCAATTTGACACTGGAGGGCTATAT 59.867 40.000 0.00 0.00 0.00 0.86
349 350 4.473196 TCAATTTGACACTGGAGGGCTATA 59.527 41.667 0.00 0.00 0.00 1.31
350 351 3.266772 TCAATTTGACACTGGAGGGCTAT 59.733 43.478 0.00 0.00 0.00 2.97
351 352 2.642311 TCAATTTGACACTGGAGGGCTA 59.358 45.455 0.00 0.00 0.00 3.93
352 353 1.425066 TCAATTTGACACTGGAGGGCT 59.575 47.619 0.00 0.00 0.00 5.19
353 354 1.909700 TCAATTTGACACTGGAGGGC 58.090 50.000 0.00 0.00 0.00 5.19
354 355 2.558359 GGTTCAATTTGACACTGGAGGG 59.442 50.000 0.00 0.00 0.00 4.30
355 356 2.558359 GGGTTCAATTTGACACTGGAGG 59.442 50.000 0.00 0.00 0.00 4.30
356 357 3.004734 GTGGGTTCAATTTGACACTGGAG 59.995 47.826 0.00 0.00 0.00 3.86
357 358 2.955660 GTGGGTTCAATTTGACACTGGA 59.044 45.455 0.00 0.00 0.00 3.86
358 359 2.287547 CGTGGGTTCAATTTGACACTGG 60.288 50.000 13.53 0.69 0.00 4.00
359 360 2.616376 TCGTGGGTTCAATTTGACACTG 59.384 45.455 13.53 9.08 0.00 3.66
360 361 2.925724 TCGTGGGTTCAATTTGACACT 58.074 42.857 13.53 0.00 0.00 3.55
361 362 3.915437 ATCGTGGGTTCAATTTGACAC 57.085 42.857 0.00 3.85 0.00 3.67
362 363 5.707764 TGAATATCGTGGGTTCAATTTGACA 59.292 36.000 0.00 0.00 0.00 3.58
363 364 6.027749 GTGAATATCGTGGGTTCAATTTGAC 58.972 40.000 0.00 0.00 34.04 3.18
364 365 5.163804 CGTGAATATCGTGGGTTCAATTTGA 60.164 40.000 0.00 0.00 34.04 2.69
365 366 5.027737 CGTGAATATCGTGGGTTCAATTTG 58.972 41.667 0.00 0.00 34.04 2.32
366 367 4.938832 TCGTGAATATCGTGGGTTCAATTT 59.061 37.500 0.00 0.00 34.04 1.82
367 368 4.509616 TCGTGAATATCGTGGGTTCAATT 58.490 39.130 0.00 0.00 34.04 2.32
368 369 4.131649 TCGTGAATATCGTGGGTTCAAT 57.868 40.909 0.00 0.00 34.04 2.57
369 370 3.596310 TCGTGAATATCGTGGGTTCAA 57.404 42.857 0.00 0.00 34.04 2.69
370 371 3.812156 ATCGTGAATATCGTGGGTTCA 57.188 42.857 0.00 0.00 0.00 3.18
371 372 4.868067 ACTATCGTGAATATCGTGGGTTC 58.132 43.478 0.00 0.00 0.00 3.62
372 373 4.931661 ACTATCGTGAATATCGTGGGTT 57.068 40.909 0.00 0.00 0.00 4.11
373 374 5.048921 CAGTACTATCGTGAATATCGTGGGT 60.049 44.000 0.00 0.00 0.00 4.51
374 375 5.048921 ACAGTACTATCGTGAATATCGTGGG 60.049 44.000 0.00 0.00 0.00 4.61
375 376 5.998553 ACAGTACTATCGTGAATATCGTGG 58.001 41.667 0.00 0.00 0.00 4.94
376 377 7.794880 ACTACAGTACTATCGTGAATATCGTG 58.205 38.462 0.00 0.00 0.00 4.35
377 378 7.959689 ACTACAGTACTATCGTGAATATCGT 57.040 36.000 0.00 0.00 0.00 3.73
378 379 9.661187 AAAACTACAGTACTATCGTGAATATCG 57.339 33.333 0.00 0.00 0.00 2.92
381 382 9.920826 CGTAAAACTACAGTACTATCGTGAATA 57.079 33.333 0.00 0.00 0.00 1.75
382 383 7.912250 CCGTAAAACTACAGTACTATCGTGAAT 59.088 37.037 0.00 0.00 0.00 2.57
383 384 7.243487 CCGTAAAACTACAGTACTATCGTGAA 58.757 38.462 0.00 0.00 0.00 3.18
384 385 6.183360 CCCGTAAAACTACAGTACTATCGTGA 60.183 42.308 0.00 0.00 0.00 4.35
385 386 5.967674 CCCGTAAAACTACAGTACTATCGTG 59.032 44.000 0.00 0.00 0.00 4.35
386 387 5.880332 TCCCGTAAAACTACAGTACTATCGT 59.120 40.000 0.00 0.00 0.00 3.73
387 388 6.363577 TCCCGTAAAACTACAGTACTATCG 57.636 41.667 0.00 0.00 0.00 2.92
388 389 6.688813 CGTTCCCGTAAAACTACAGTACTATC 59.311 42.308 0.00 0.00 0.00 2.08
389 390 6.404734 CCGTTCCCGTAAAACTACAGTACTAT 60.405 42.308 0.00 0.00 0.00 2.12
390 391 5.106317 CCGTTCCCGTAAAACTACAGTACTA 60.106 44.000 0.00 0.00 0.00 1.82
391 392 4.321230 CCGTTCCCGTAAAACTACAGTACT 60.321 45.833 0.00 0.00 0.00 2.73
392 393 3.920412 CCGTTCCCGTAAAACTACAGTAC 59.080 47.826 0.00 0.00 0.00 2.73
393 394 3.572255 ACCGTTCCCGTAAAACTACAGTA 59.428 43.478 0.00 0.00 0.00 2.74
394 395 2.365293 ACCGTTCCCGTAAAACTACAGT 59.635 45.455 0.00 0.00 0.00 3.55
395 396 2.733026 CACCGTTCCCGTAAAACTACAG 59.267 50.000 0.00 0.00 0.00 2.74
396 397 2.363680 TCACCGTTCCCGTAAAACTACA 59.636 45.455 0.00 0.00 0.00 2.74
397 398 3.025287 TCACCGTTCCCGTAAAACTAC 57.975 47.619 0.00 0.00 0.00 2.73
398 399 3.069443 AGTTCACCGTTCCCGTAAAACTA 59.931 43.478 0.00 0.00 30.28 2.24
399 400 2.158914 AGTTCACCGTTCCCGTAAAACT 60.159 45.455 0.00 0.00 0.00 2.66
400 401 2.212652 AGTTCACCGTTCCCGTAAAAC 58.787 47.619 0.00 0.00 0.00 2.43
401 402 2.618442 AGTTCACCGTTCCCGTAAAA 57.382 45.000 0.00 0.00 0.00 1.52
402 403 3.511146 AGATAGTTCACCGTTCCCGTAAA 59.489 43.478 0.00 0.00 0.00 2.01
403 404 3.091545 AGATAGTTCACCGTTCCCGTAA 58.908 45.455 0.00 0.00 0.00 3.18
404 405 2.684881 GAGATAGTTCACCGTTCCCGTA 59.315 50.000 0.00 0.00 0.00 4.02
405 406 1.475682 GAGATAGTTCACCGTTCCCGT 59.524 52.381 0.00 0.00 0.00 5.28
406 407 1.475280 TGAGATAGTTCACCGTTCCCG 59.525 52.381 0.00 0.00 0.00 5.14
407 408 3.604875 TTGAGATAGTTCACCGTTCCC 57.395 47.619 0.00 0.00 0.00 3.97
408 409 5.237779 TGTTTTTGAGATAGTTCACCGTTCC 59.762 40.000 0.00 0.00 0.00 3.62
409 410 6.295039 TGTTTTTGAGATAGTTCACCGTTC 57.705 37.500 0.00 0.00 0.00 3.95
410 411 6.492254 GTTGTTTTTGAGATAGTTCACCGTT 58.508 36.000 0.00 0.00 0.00 4.44
411 412 5.277154 CGTTGTTTTTGAGATAGTTCACCGT 60.277 40.000 0.00 0.00 0.00 4.83
412 413 5.050634 TCGTTGTTTTTGAGATAGTTCACCG 60.051 40.000 0.00 0.00 0.00 4.94
413 414 6.295039 TCGTTGTTTTTGAGATAGTTCACC 57.705 37.500 0.00 0.00 0.00 4.02
414 415 6.851330 CCTTCGTTGTTTTTGAGATAGTTCAC 59.149 38.462 0.00 0.00 0.00 3.18
415 416 6.540914 ACCTTCGTTGTTTTTGAGATAGTTCA 59.459 34.615 0.00 0.00 0.00 3.18
416 417 6.851330 CACCTTCGTTGTTTTTGAGATAGTTC 59.149 38.462 0.00 0.00 0.00 3.01
417 418 6.317893 ACACCTTCGTTGTTTTTGAGATAGTT 59.682 34.615 0.00 0.00 0.00 2.24
418 419 5.820947 ACACCTTCGTTGTTTTTGAGATAGT 59.179 36.000 0.00 0.00 0.00 2.12
419 420 6.300354 ACACCTTCGTTGTTTTTGAGATAG 57.700 37.500 0.00 0.00 0.00 2.08
420 421 6.238538 GGAACACCTTCGTTGTTTTTGAGATA 60.239 38.462 0.00 0.00 0.00 1.98
421 422 5.449999 GGAACACCTTCGTTGTTTTTGAGAT 60.450 40.000 0.00 0.00 0.00 2.75
422 423 4.142556 GGAACACCTTCGTTGTTTTTGAGA 60.143 41.667 0.00 0.00 0.00 3.27
423 424 4.102649 GGAACACCTTCGTTGTTTTTGAG 58.897 43.478 0.00 0.00 0.00 3.02
424 425 3.426426 CGGAACACCTTCGTTGTTTTTGA 60.426 43.478 0.00 0.00 0.00 2.69
425 426 2.849473 CGGAACACCTTCGTTGTTTTTG 59.151 45.455 0.00 0.00 0.00 2.44
426 427 2.488937 ACGGAACACCTTCGTTGTTTTT 59.511 40.909 0.00 0.00 32.95 1.94
427 428 2.086094 ACGGAACACCTTCGTTGTTTT 58.914 42.857 0.00 0.00 32.95 2.43
428 429 1.741528 ACGGAACACCTTCGTTGTTT 58.258 45.000 0.00 0.00 32.95 2.83
429 430 2.600470 TACGGAACACCTTCGTTGTT 57.400 45.000 0.00 0.00 38.19 2.83
430 431 2.204237 GTTACGGAACACCTTCGTTGT 58.796 47.619 5.39 0.00 38.19 3.32
431 432 1.190763 CGTTACGGAACACCTTCGTTG 59.809 52.381 11.86 0.00 38.19 4.10
432 433 1.066908 TCGTTACGGAACACCTTCGTT 59.933 47.619 11.86 0.00 38.19 3.85
433 434 0.667993 TCGTTACGGAACACCTTCGT 59.332 50.000 11.86 0.00 40.40 3.85
434 435 1.916000 GATCGTTACGGAACACCTTCG 59.084 52.381 11.86 0.00 35.06 3.79
435 436 3.227810 AGATCGTTACGGAACACCTTC 57.772 47.619 11.86 1.32 35.06 3.46
436 437 3.426695 CGTAGATCGTTACGGAACACCTT 60.427 47.826 11.86 0.00 41.93 3.50
437 438 2.096496 CGTAGATCGTTACGGAACACCT 59.904 50.000 11.86 6.44 41.93 4.00
438 439 2.444351 CGTAGATCGTTACGGAACACC 58.556 52.381 11.86 0.00 41.93 4.16
487 488 4.333095 TGTCAGATCGTTTCGGAACAAAAA 59.667 37.500 7.49 0.00 35.44 1.94
488 489 3.872182 TGTCAGATCGTTTCGGAACAAAA 59.128 39.130 7.49 0.00 35.44 2.44
489 490 3.459145 TGTCAGATCGTTTCGGAACAAA 58.541 40.909 7.49 0.00 35.44 2.83
490 491 3.100658 TGTCAGATCGTTTCGGAACAA 57.899 42.857 7.49 0.00 35.44 2.83
491 492 2.804697 TGTCAGATCGTTTCGGAACA 57.195 45.000 7.49 0.00 35.44 3.18
492 493 5.220416 CCTTATTGTCAGATCGTTTCGGAAC 60.220 44.000 0.00 0.00 29.97 3.62
493 494 4.868171 CCTTATTGTCAGATCGTTTCGGAA 59.132 41.667 0.00 0.00 29.97 4.30
494 495 4.430007 CCTTATTGTCAGATCGTTTCGGA 58.570 43.478 0.00 0.00 0.00 4.55
495 496 3.001330 GCCTTATTGTCAGATCGTTTCGG 59.999 47.826 0.00 0.00 0.00 4.30
496 497 3.301835 CGCCTTATTGTCAGATCGTTTCG 60.302 47.826 0.00 0.00 0.00 3.46
497 498 3.617263 ACGCCTTATTGTCAGATCGTTTC 59.383 43.478 0.00 0.00 0.00 2.78
498 499 3.596214 ACGCCTTATTGTCAGATCGTTT 58.404 40.909 0.00 0.00 0.00 3.60
499 500 3.247006 ACGCCTTATTGTCAGATCGTT 57.753 42.857 0.00 0.00 0.00 3.85
500 501 2.961526 ACGCCTTATTGTCAGATCGT 57.038 45.000 0.00 0.00 0.00 3.73
501 502 3.243877 CAGAACGCCTTATTGTCAGATCG 59.756 47.826 0.00 0.00 0.00 3.69
502 503 4.433615 TCAGAACGCCTTATTGTCAGATC 58.566 43.478 0.00 0.00 0.00 2.75
503 504 4.471904 TCAGAACGCCTTATTGTCAGAT 57.528 40.909 0.00 0.00 0.00 2.90
504 505 3.953712 TCAGAACGCCTTATTGTCAGA 57.046 42.857 0.00 0.00 0.00 3.27
505 506 4.712763 GTTTCAGAACGCCTTATTGTCAG 58.287 43.478 0.00 0.00 0.00 3.51
506 507 4.742438 GTTTCAGAACGCCTTATTGTCA 57.258 40.909 0.00 0.00 0.00 3.58
517 518 5.459532 TGGAGTAGCCTCGTTTCAGAACG 62.460 52.174 5.40 5.40 46.22 3.95
518 519 2.029290 TGGAGTAGCCTCGTTTCAGAAC 60.029 50.000 0.00 0.00 38.70 3.01
519 520 2.244695 TGGAGTAGCCTCGTTTCAGAA 58.755 47.619 0.00 0.00 38.70 3.02
520 521 1.919240 TGGAGTAGCCTCGTTTCAGA 58.081 50.000 0.00 0.00 38.70 3.27
521 522 2.544685 CATGGAGTAGCCTCGTTTCAG 58.455 52.381 0.00 0.00 38.70 3.02
522 523 1.405526 GCATGGAGTAGCCTCGTTTCA 60.406 52.381 0.00 0.00 38.70 2.69
641 657 2.685380 AGGAGGAGGGCTTGGACG 60.685 66.667 0.00 0.00 0.00 4.79
643 659 1.613630 GTGAGGAGGAGGGCTTGGA 60.614 63.158 0.00 0.00 0.00 3.53
981 1077 0.316204 TTTCGTCGAACACCCTCCTC 59.684 55.000 7.29 0.00 0.00 3.71
1186 1282 2.031012 CTGCCGCTTGAGACACCA 59.969 61.111 0.00 0.00 0.00 4.17
1194 1290 4.093291 AGCTCCCTCTGCCGCTTG 62.093 66.667 0.00 0.00 0.00 4.01
1198 1294 3.393970 TTCCAGCTCCCTCTGCCG 61.394 66.667 0.00 0.00 32.87 5.69
1201 1297 1.138661 GATGAGTTCCAGCTCCCTCTG 59.861 57.143 0.00 0.00 34.74 3.35
1237 1333 7.272037 TCTCGCACTTGACATACATATCTAA 57.728 36.000 0.00 0.00 0.00 2.10
1267 1363 1.526575 AACACCCGCCTTGCAAGATG 61.527 55.000 28.05 17.98 0.00 2.90
1296 1392 3.909732 AGAAACAATGTCCCTCACCAAA 58.090 40.909 0.00 0.00 0.00 3.28
1359 1455 2.364317 AGCTCCAAGGCCTCGCTA 60.364 61.111 5.23 0.00 0.00 4.26
1368 1464 2.205022 TCCCATTGAACAGCTCCAAG 57.795 50.000 0.00 0.00 0.00 3.61
1521 1617 1.358787 ACCAATGATGTCCCCACATGT 59.641 47.619 0.00 0.00 43.79 3.21
1605 1701 6.319658 ACGCATTCCAAGATGATACATTCTTT 59.680 34.615 0.00 0.00 29.85 2.52
1771 1867 1.900245 TTAAACAACCCGAGGCCTTC 58.100 50.000 6.77 0.00 0.00 3.46
1800 1896 5.934043 CCATGGCGAGAGATTGTATGAATTA 59.066 40.000 0.00 0.00 0.00 1.40
1806 1902 2.329267 TCCCATGGCGAGAGATTGTAT 58.671 47.619 6.09 0.00 0.00 2.29
1812 1908 1.680522 GCTCTTCCCATGGCGAGAGA 61.681 60.000 31.29 19.23 35.92 3.10
1875 1971 8.058847 ACCTTAATTAAACCATATGCTTCCTGA 58.941 33.333 0.00 0.00 0.00 3.86
1968 2064 6.107901 AGAATCTGCTGTGAAAACTCTACT 57.892 37.500 0.00 0.00 0.00 2.57
2008 2104 0.545309 CCACTCCCAGAGGACTCCAA 60.545 60.000 0.00 0.00 37.19 3.53
2108 2204 1.688735 GCTCCTTCCACAAGCCTTTTT 59.311 47.619 0.00 0.00 0.00 1.94
2217 2313 3.545078 GCTTCATTAGCATGAAAAGCACG 59.455 43.478 0.00 0.00 46.67 5.34
2237 2333 4.175516 CAACGCATCCAAATGTATTTGCT 58.824 39.130 10.98 0.00 44.32 3.91
2255 2351 2.343101 TCGGCCTGAAGAATTACAACG 58.657 47.619 0.00 0.00 0.00 4.10
2257 2353 4.843728 AGAATCGGCCTGAAGAATTACAA 58.156 39.130 0.00 0.00 0.00 2.41
2273 2369 3.987868 TCTCCAACGAAAACTGAGAATCG 59.012 43.478 0.00 0.00 38.61 3.34
2376 2472 4.649218 TGTAGCCAGATGATGCTAACAGTA 59.351 41.667 0.00 0.00 41.42 2.74
2378 2474 3.806521 GTGTAGCCAGATGATGCTAACAG 59.193 47.826 0.00 0.00 41.42 3.16
2417 2513 3.983044 AGGTTAGACTTGATCACCCAC 57.017 47.619 0.00 0.00 0.00 4.61
2429 2525 4.095036 GCAGTAGCAATTCCAAGGTTAGAC 59.905 45.833 0.00 0.00 41.58 2.59
2489 2585 0.237235 TTAACGCCAGAAAAGCTGCG 59.763 50.000 11.78 11.78 43.50 5.18
2558 2654 3.701040 ACCCAACAATGGCTGATATTCAC 59.299 43.478 0.00 0.00 46.09 3.18
2592 2689 5.545588 TCATGTTCAAGAACTGAAGAGAGG 58.454 41.667 13.49 0.00 44.83 3.69
2593 2690 7.387122 TCAATCATGTTCAAGAACTGAAGAGAG 59.613 37.037 13.49 5.93 44.83 3.20
2632 2736 2.121948 TCCATCCAGGAGTTCTGATGG 58.878 52.381 17.54 17.54 46.18 3.51
2656 2761 2.028020 CCTTGTAAGGGTCAGAGTCCAC 60.028 54.545 2.63 0.00 42.66 4.02
2749 2854 6.014755 TCTCAACTCTCAACTCAATCTGATGT 60.015 38.462 0.00 0.00 0.00 3.06
2777 2882 0.103572 TCTTGGCGCGGTTATCTACC 59.896 55.000 8.83 0.00 44.03 3.18
2778 2883 1.488527 CTCTTGGCGCGGTTATCTAC 58.511 55.000 8.83 0.00 0.00 2.59
2780 2885 1.521681 GCTCTTGGCGCGGTTATCT 60.522 57.895 8.83 0.00 0.00 1.98
2781 2886 3.014856 GCTCTTGGCGCGGTTATC 58.985 61.111 8.83 0.00 0.00 1.75
2806 2920 7.343357 TGTTTACAAGGCTGGTATATTTAGCT 58.657 34.615 1.80 0.00 37.58 3.32
2807 2921 7.562454 TGTTTACAAGGCTGGTATATTTAGC 57.438 36.000 1.80 0.00 36.74 3.09
2808 2922 8.076178 GCATGTTTACAAGGCTGGTATATTTAG 58.924 37.037 1.80 0.00 0.00 1.85
2809 2923 7.013846 GGCATGTTTACAAGGCTGGTATATTTA 59.986 37.037 1.80 0.00 37.20 1.40
2810 2924 6.183360 GGCATGTTTACAAGGCTGGTATATTT 60.183 38.462 1.80 0.00 37.20 1.40
2846 2967 6.267471 CCTAGGCTTCAGAGATAACTTCAGAT 59.733 42.308 0.00 0.00 0.00 2.90
2859 2980 2.828520 CACTTCACTCCTAGGCTTCAGA 59.171 50.000 2.96 0.00 0.00 3.27
3094 3220 7.175119 GGTGCTTTCAGAAGGAATTTAACTAGT 59.825 37.037 0.00 0.00 34.84 2.57
3095 3221 7.362142 GGGTGCTTTCAGAAGGAATTTAACTAG 60.362 40.741 0.00 0.00 34.84 2.57
3107 3233 7.331791 AGTACTAAATAGGGTGCTTTCAGAAG 58.668 38.462 0.00 0.00 35.92 2.85
3124 3250 8.560355 ACATTGTCATGTATGCAAGTACTAAA 57.440 30.769 0.00 0.00 42.24 1.85
3125 3251 9.660180 TTACATTGTCATGTATGCAAGTACTAA 57.340 29.630 0.00 0.00 43.96 2.24
3126 3252 9.660180 TTTACATTGTCATGTATGCAAGTACTA 57.340 29.630 0.00 0.00 43.96 1.82
3127 3253 8.560355 TTTACATTGTCATGTATGCAAGTACT 57.440 30.769 0.00 0.00 43.96 2.73
3219 3345 7.171678 CAGGAGGTTTAACTAAAGTGTGAGAAG 59.828 40.741 0.00 0.00 0.00 2.85
3228 3354 7.159372 TCTACAAGCAGGAGGTTTAACTAAAG 58.841 38.462 0.00 0.00 32.07 1.85
3240 3366 1.415659 CCCATCCTCTACAAGCAGGAG 59.584 57.143 0.00 0.00 42.28 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.