Multiple sequence alignment - TraesCS2D01G345100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G345100 chr2D 100.000 3055 0 0 1 3055 441079578 441082632 0.000000e+00 5642.0
1 TraesCS2D01G345100 chr2D 98.714 622 8 0 1 622 123490686 123491307 0.000000e+00 1105.0
2 TraesCS2D01G345100 chr2D 97.504 641 13 3 1 638 441558003 441558643 0.000000e+00 1092.0
3 TraesCS2D01G345100 chr2D 95.652 184 8 0 757 940 441058460 441058643 2.300000e-76 296.0
4 TraesCS2D01G345100 chr2B 94.569 1289 53 8 1769 3055 518769338 518770611 0.000000e+00 1977.0
5 TraesCS2D01G345100 chr2B 96.009 451 18 0 1237 1687 518768889 518769339 0.000000e+00 734.0
6 TraesCS2D01G345100 chr2B 93.729 303 17 1 940 1242 518763163 518763463 1.290000e-123 453.0
7 TraesCS2D01G345100 chr2A 95.861 918 30 4 2141 3055 584585681 584586593 0.000000e+00 1478.0
8 TraesCS2D01G345100 chr2A 95.989 748 29 1 940 1687 584580898 584581644 0.000000e+00 1214.0
9 TraesCS2D01G345100 chr2A 93.111 450 29 2 2382 2829 584585206 584585655 0.000000e+00 658.0
10 TraesCS2D01G345100 chr2A 91.622 370 22 4 2021 2390 584584040 584584400 1.260000e-138 503.0
11 TraesCS2D01G345100 chr2A 90.769 260 20 2 1769 2028 584581643 584581898 8.110000e-91 344.0
12 TraesCS2D01G345100 chr2A 95.402 87 4 0 1684 1770 709027670 709027584 4.110000e-29 139.0
13 TraesCS2D01G345100 chr2A 94.253 87 5 0 1685 1771 569281071 569281157 1.910000e-27 134.0
14 TraesCS2D01G345100 chr7D 98.716 623 8 0 1 623 99949096 99949718 0.000000e+00 1107.0
15 TraesCS2D01G345100 chr7D 98.405 627 10 0 1 627 454506982 454506356 0.000000e+00 1103.0
16 TraesCS2D01G345100 chr7D 97.218 647 15 3 1 647 411920636 411921279 0.000000e+00 1092.0
17 TraesCS2D01G345100 chr7D 94.044 319 16 1 622 940 598202073 598202388 5.920000e-132 481.0
18 TraesCS2D01G345100 chr7D 94.737 190 10 0 750 939 598197175 598197364 2.300000e-76 296.0
19 TraesCS2D01G345100 chr7D 93.023 86 6 0 1686 1771 441864119 441864034 3.200000e-25 126.0
20 TraesCS2D01G345100 chr5D 98.714 622 8 0 1 622 514010431 514011052 0.000000e+00 1105.0
21 TraesCS2D01G345100 chr5D 96.246 666 18 6 1 659 508972995 508973660 0.000000e+00 1085.0
22 TraesCS2D01G345100 chr5D 94.357 319 17 1 622 939 326283528 326283846 3.540000e-134 488.0
23 TraesCS2D01G345100 chr5D 94.792 192 9 1 749 939 326278890 326279081 6.400000e-77 298.0
24 TraesCS2D01G345100 chr5D 94.505 91 4 1 1685 1775 376305317 376305406 4.110000e-29 139.0
25 TraesCS2D01G345100 chr5D 95.349 86 4 0 1685 1770 538765621 538765536 1.480000e-28 137.0
26 TraesCS2D01G345100 chr6D 98.254 630 11 0 1 630 140169123 140168494 0.000000e+00 1103.0
27 TraesCS2D01G345100 chr6D 98.558 624 9 0 1 624 309033131 309033754 0.000000e+00 1103.0
28 TraesCS2D01G345100 chr1B 93.189 323 22 0 622 944 647515829 647516151 2.760000e-130 475.0
29 TraesCS2D01G345100 chr1B 91.912 136 11 0 804 939 647509385 647509520 1.120000e-44 191.0
30 TraesCS2D01G345100 chr1B 94.643 56 3 0 750 805 647504476 647504531 1.510000e-13 87.9
31 TraesCS2D01G345100 chr3B 91.509 318 27 0 622 939 684349342 684349025 3.620000e-119 438.0
32 TraesCS2D01G345100 chr3B 89.691 194 19 1 746 939 684354384 684354192 2.350000e-61 246.0
33 TraesCS2D01G345100 chr6A 88.987 227 12 6 713 939 31107962 31108175 5.020000e-68 268.0
34 TraesCS2D01G345100 chr3D 95.402 87 2 1 1685 1771 543080454 543080370 1.480000e-28 137.0
35 TraesCS2D01G345100 chr3D 92.553 94 5 2 1686 1778 362072409 362072317 1.910000e-27 134.0
36 TraesCS2D01G345100 chr5B 94.253 87 5 0 1685 1771 588397985 588397899 1.910000e-27 134.0
37 TraesCS2D01G345100 chr7B 88.462 104 10 2 1676 1778 700274507 700274405 1.150000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G345100 chr2D 441079578 441082632 3054 False 5642.0 5642 100.0000 1 3055 1 chr2D.!!$F3 3054
1 TraesCS2D01G345100 chr2D 123490686 123491307 621 False 1105.0 1105 98.7140 1 622 1 chr2D.!!$F1 621
2 TraesCS2D01G345100 chr2D 441558003 441558643 640 False 1092.0 1092 97.5040 1 638 1 chr2D.!!$F4 637
3 TraesCS2D01G345100 chr2B 518768889 518770611 1722 False 1355.5 1977 95.2890 1237 3055 2 chr2B.!!$F2 1818
4 TraesCS2D01G345100 chr2A 584580898 584586593 5695 False 839.4 1478 93.4704 940 3055 5 chr2A.!!$F2 2115
5 TraesCS2D01G345100 chr7D 99949096 99949718 622 False 1107.0 1107 98.7160 1 623 1 chr7D.!!$F1 622
6 TraesCS2D01G345100 chr7D 454506356 454506982 626 True 1103.0 1103 98.4050 1 627 1 chr7D.!!$R2 626
7 TraesCS2D01G345100 chr7D 411920636 411921279 643 False 1092.0 1092 97.2180 1 647 1 chr7D.!!$F2 646
8 TraesCS2D01G345100 chr5D 514010431 514011052 621 False 1105.0 1105 98.7140 1 622 1 chr5D.!!$F5 621
9 TraesCS2D01G345100 chr5D 508972995 508973660 665 False 1085.0 1085 96.2460 1 659 1 chr5D.!!$F4 658
10 TraesCS2D01G345100 chr6D 140168494 140169123 629 True 1103.0 1103 98.2540 1 630 1 chr6D.!!$R1 629
11 TraesCS2D01G345100 chr6D 309033131 309033754 623 False 1103.0 1103 98.5580 1 624 1 chr6D.!!$F1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 766 0.030773 GTCTGATACCATGCGAGCGA 59.969 55.0 0.0 0.0 0.0 4.93 F
1700 1709 0.039180 TTGCTACTCCCTCCGTCTCA 59.961 55.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 1764 0.178941 TTATCTACTCCCTCCGGCCC 60.179 60.0 0.00 0.0 0.0 5.80 R
2901 6595 2.076207 TAGGTCACAAGGCGGCTATA 57.924 50.0 13.71 0.0 0.0 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 113 0.107214 ATGTGCATTACCGAGTGGGG 60.107 55.000 0.00 0.00 41.60 4.96
155 157 5.677319 TCGGAGTGACAAATCCTAATCTT 57.323 39.130 6.43 0.00 33.12 2.40
264 266 4.701171 ACACAAAGTGTTCCTTCGGTAAAA 59.299 37.500 0.00 0.00 45.08 1.52
417 419 6.183360 GGTGATCCCGTTAATCAAATGACAAT 60.183 38.462 0.00 0.00 35.04 2.71
632 634 1.774894 TTTCCTTCAGGTGGGACGGG 61.775 60.000 0.00 0.00 36.34 5.28
634 636 2.606519 CTTCAGGTGGGACGGGGA 60.607 66.667 0.00 0.00 0.00 4.81
640 642 2.606826 GTGGGACGGGGAGGAAGT 60.607 66.667 0.00 0.00 0.00 3.01
668 677 4.821589 GTGGCGGCGGAGAAGGAG 62.822 72.222 9.78 0.00 0.00 3.69
675 684 3.854669 CGGAGAAGGAGCCGCCAT 61.855 66.667 0.00 0.00 41.17 4.40
676 685 2.592308 GGAGAAGGAGCCGCCATT 59.408 61.111 0.00 0.00 40.02 3.16
677 686 1.821332 GGAGAAGGAGCCGCCATTG 60.821 63.158 0.00 0.00 40.02 2.82
678 687 1.078143 GAGAAGGAGCCGCCATTGT 60.078 57.895 0.00 0.00 40.02 2.71
679 688 0.678048 GAGAAGGAGCCGCCATTGTT 60.678 55.000 0.00 0.00 40.02 2.83
680 689 0.962356 AGAAGGAGCCGCCATTGTTG 60.962 55.000 0.00 0.00 40.02 3.33
681 690 2.548127 GAAGGAGCCGCCATTGTTGC 62.548 60.000 0.00 0.00 40.02 4.17
688 697 4.481112 GCCATTGTTGCGGGCTCG 62.481 66.667 0.00 0.00 44.32 5.03
689 698 3.814268 CCATTGTTGCGGGCTCGG 61.814 66.667 8.71 0.00 36.79 4.63
690 699 2.745884 CATTGTTGCGGGCTCGGA 60.746 61.111 8.71 0.00 36.79 4.55
691 700 2.436646 ATTGTTGCGGGCTCGGAG 60.437 61.111 8.71 0.00 38.13 4.63
692 701 2.954684 ATTGTTGCGGGCTCGGAGA 61.955 57.895 8.71 0.00 38.13 3.71
693 702 3.876589 TTGTTGCGGGCTCGGAGAC 62.877 63.158 8.71 5.54 38.13 3.36
705 714 3.760035 GGAGACGAGGCAGCGGAA 61.760 66.667 4.86 0.00 35.12 4.30
706 715 2.202676 GAGACGAGGCAGCGGAAG 60.203 66.667 4.86 0.00 35.12 3.46
719 728 3.442996 CGGAAGCTGGAGGTTACAG 57.557 57.895 1.91 0.00 36.19 2.74
720 729 0.895530 CGGAAGCTGGAGGTTACAGA 59.104 55.000 1.91 0.00 36.19 3.41
721 730 1.404315 CGGAAGCTGGAGGTTACAGAC 60.404 57.143 1.91 0.00 36.19 3.51
722 731 1.623811 GGAAGCTGGAGGTTACAGACA 59.376 52.381 0.00 0.00 38.20 3.41
723 732 2.354203 GGAAGCTGGAGGTTACAGACAG 60.354 54.545 0.00 0.00 38.20 3.51
724 733 1.270907 AGCTGGAGGTTACAGACAGG 58.729 55.000 0.00 0.00 38.20 4.00
725 734 0.250513 GCTGGAGGTTACAGACAGGG 59.749 60.000 0.00 0.00 38.20 4.45
726 735 0.905357 CTGGAGGTTACAGACAGGGG 59.095 60.000 0.00 0.00 38.20 4.79
727 736 0.490017 TGGAGGTTACAGACAGGGGA 59.510 55.000 0.00 0.00 0.00 4.81
728 737 1.080498 TGGAGGTTACAGACAGGGGAT 59.920 52.381 0.00 0.00 0.00 3.85
729 738 1.486726 GGAGGTTACAGACAGGGGATG 59.513 57.143 0.00 0.00 0.00 3.51
730 739 1.486726 GAGGTTACAGACAGGGGATGG 59.513 57.143 0.00 0.00 0.00 3.51
731 740 1.080498 AGGTTACAGACAGGGGATGGA 59.920 52.381 0.00 0.00 0.00 3.41
732 741 1.913419 GGTTACAGACAGGGGATGGAA 59.087 52.381 0.00 0.00 0.00 3.53
733 742 2.355818 GGTTACAGACAGGGGATGGAAC 60.356 54.545 0.00 0.00 37.10 3.62
734 743 1.580059 TACAGACAGGGGATGGAACC 58.420 55.000 0.00 0.00 0.00 3.62
735 744 1.221840 CAGACAGGGGATGGAACCG 59.778 63.158 0.00 0.00 0.00 4.44
736 745 1.995626 AGACAGGGGATGGAACCGG 60.996 63.158 0.00 0.00 0.00 5.28
737 746 3.699134 GACAGGGGATGGAACCGGC 62.699 68.421 0.00 0.00 0.00 6.13
738 747 4.856801 CAGGGGATGGAACCGGCG 62.857 72.222 0.00 0.00 0.00 6.46
740 749 4.851179 GGGGATGGAACCGGCGTC 62.851 72.222 6.01 0.00 0.00 5.19
741 750 3.782443 GGGATGGAACCGGCGTCT 61.782 66.667 6.01 0.00 0.00 4.18
742 751 2.511600 GGATGGAACCGGCGTCTG 60.512 66.667 6.01 0.00 0.00 3.51
743 752 2.577059 GATGGAACCGGCGTCTGA 59.423 61.111 6.01 0.00 0.00 3.27
744 753 1.144057 GATGGAACCGGCGTCTGAT 59.856 57.895 6.01 0.00 0.00 2.90
745 754 0.387929 GATGGAACCGGCGTCTGATA 59.612 55.000 6.01 0.00 0.00 2.15
746 755 0.104304 ATGGAACCGGCGTCTGATAC 59.896 55.000 6.01 0.00 0.00 2.24
747 756 1.227176 GGAACCGGCGTCTGATACC 60.227 63.158 6.01 0.00 0.00 2.73
748 757 1.514087 GAACCGGCGTCTGATACCA 59.486 57.895 6.01 0.00 0.00 3.25
749 758 0.104304 GAACCGGCGTCTGATACCAT 59.896 55.000 6.01 0.00 0.00 3.55
750 759 0.179084 AACCGGCGTCTGATACCATG 60.179 55.000 6.01 0.00 0.00 3.66
751 760 1.956170 CCGGCGTCTGATACCATGC 60.956 63.158 6.01 0.00 0.00 4.06
752 761 2.302952 CGGCGTCTGATACCATGCG 61.303 63.158 0.00 0.00 0.00 4.73
753 762 1.067416 GGCGTCTGATACCATGCGA 59.933 57.895 0.00 0.00 0.00 5.10
754 763 0.941463 GGCGTCTGATACCATGCGAG 60.941 60.000 0.00 0.00 0.00 5.03
755 764 1.552348 GCGTCTGATACCATGCGAGC 61.552 60.000 0.00 0.00 0.00 5.03
756 765 1.271446 CGTCTGATACCATGCGAGCG 61.271 60.000 0.00 0.00 0.00 5.03
757 766 0.030773 GTCTGATACCATGCGAGCGA 59.969 55.000 0.00 0.00 0.00 4.93
758 767 0.312102 TCTGATACCATGCGAGCGAG 59.688 55.000 0.00 0.00 0.00 5.03
759 768 0.312102 CTGATACCATGCGAGCGAGA 59.688 55.000 0.00 0.00 0.00 4.04
760 769 0.312102 TGATACCATGCGAGCGAGAG 59.688 55.000 0.00 0.00 0.00 3.20
761 770 0.593618 GATACCATGCGAGCGAGAGA 59.406 55.000 0.00 0.00 0.00 3.10
762 771 0.595588 ATACCATGCGAGCGAGAGAG 59.404 55.000 0.00 0.00 0.00 3.20
763 772 1.448119 TACCATGCGAGCGAGAGAGG 61.448 60.000 0.00 0.00 0.00 3.69
764 773 2.484928 CCATGCGAGCGAGAGAGGA 61.485 63.158 0.00 0.00 0.00 3.71
765 774 1.435105 CATGCGAGCGAGAGAGGAA 59.565 57.895 0.00 0.00 0.00 3.36
766 775 0.179127 CATGCGAGCGAGAGAGGAAA 60.179 55.000 0.00 0.00 0.00 3.13
767 776 0.532573 ATGCGAGCGAGAGAGGAAAA 59.467 50.000 0.00 0.00 0.00 2.29
768 777 0.317160 TGCGAGCGAGAGAGGAAAAA 59.683 50.000 0.00 0.00 0.00 1.94
786 795 1.467920 AAATGAGCTAGGCACCTTGC 58.532 50.000 14.27 14.27 44.08 4.01
787 796 0.745845 AATGAGCTAGGCACCTTGCG 60.746 55.000 15.78 0.00 46.21 4.85
788 797 2.512515 GAGCTAGGCACCTTGCGG 60.513 66.667 15.78 0.00 46.21 5.69
789 798 3.316573 GAGCTAGGCACCTTGCGGT 62.317 63.158 15.78 1.48 46.21 5.68
790 799 2.820037 GCTAGGCACCTTGCGGTC 60.820 66.667 7.36 0.00 46.21 4.79
791 800 2.125106 CTAGGCACCTTGCGGTCC 60.125 66.667 0.00 0.00 46.21 4.46
792 801 2.606519 TAGGCACCTTGCGGTCCT 60.607 61.111 0.00 0.00 46.21 3.85
793 802 2.859273 CTAGGCACCTTGCGGTCCTG 62.859 65.000 0.00 0.00 46.21 3.86
796 805 3.052082 CACCTTGCGGTCCTGCTG 61.052 66.667 7.14 0.00 43.24 4.41
802 811 2.187946 GCGGTCCTGCTGCTGTAT 59.812 61.111 0.00 0.00 45.76 2.29
803 812 1.450312 GCGGTCCTGCTGCTGTATT 60.450 57.895 0.00 0.00 45.76 1.89
804 813 1.709147 GCGGTCCTGCTGCTGTATTG 61.709 60.000 0.00 0.00 45.76 1.90
805 814 0.108186 CGGTCCTGCTGCTGTATTGA 60.108 55.000 0.00 0.00 0.00 2.57
806 815 1.675714 CGGTCCTGCTGCTGTATTGAA 60.676 52.381 0.00 0.00 0.00 2.69
807 816 1.740025 GGTCCTGCTGCTGTATTGAAC 59.260 52.381 0.00 0.00 0.00 3.18
808 817 2.616510 GGTCCTGCTGCTGTATTGAACT 60.617 50.000 0.00 0.00 0.00 3.01
809 818 2.675348 GTCCTGCTGCTGTATTGAACTC 59.325 50.000 0.00 0.00 0.00 3.01
810 819 1.662629 CCTGCTGCTGTATTGAACTCG 59.337 52.381 0.00 0.00 0.00 4.18
811 820 2.341257 CTGCTGCTGTATTGAACTCGT 58.659 47.619 0.00 0.00 0.00 4.18
812 821 3.511699 CTGCTGCTGTATTGAACTCGTA 58.488 45.455 0.00 0.00 0.00 3.43
813 822 4.115516 CTGCTGCTGTATTGAACTCGTAT 58.884 43.478 0.00 0.00 0.00 3.06
814 823 5.257082 TGCTGCTGTATTGAACTCGTATA 57.743 39.130 0.00 0.00 0.00 1.47
815 824 5.842907 TGCTGCTGTATTGAACTCGTATAT 58.157 37.500 0.00 0.00 0.00 0.86
816 825 6.977213 TGCTGCTGTATTGAACTCGTATATA 58.023 36.000 0.00 0.00 0.00 0.86
817 826 7.602753 TGCTGCTGTATTGAACTCGTATATAT 58.397 34.615 0.00 0.00 0.00 0.86
818 827 7.542130 TGCTGCTGTATTGAACTCGTATATATG 59.458 37.037 0.00 0.00 0.00 1.78
819 828 7.755373 GCTGCTGTATTGAACTCGTATATATGA 59.245 37.037 4.59 4.59 0.00 2.15
820 829 9.283420 CTGCTGTATTGAACTCGTATATATGAG 57.717 37.037 24.48 24.48 43.34 2.90
830 839 4.978186 TCGTATATATGAGTTACAGGCGC 58.022 43.478 0.00 0.00 0.00 6.53
831 840 3.784468 CGTATATATGAGTTACAGGCGCG 59.216 47.826 0.00 0.00 0.00 6.86
832 841 3.936372 ATATATGAGTTACAGGCGCGT 57.064 42.857 8.43 0.00 0.00 6.01
833 842 1.852942 ATATGAGTTACAGGCGCGTG 58.147 50.000 27.18 27.18 0.00 5.34
834 843 0.812549 TATGAGTTACAGGCGCGTGA 59.187 50.000 34.34 16.33 0.00 4.35
835 844 0.458543 ATGAGTTACAGGCGCGTGAG 60.459 55.000 34.34 11.51 0.00 3.51
836 845 1.211969 GAGTTACAGGCGCGTGAGA 59.788 57.895 34.34 19.35 0.00 3.27
837 846 0.798771 GAGTTACAGGCGCGTGAGAG 60.799 60.000 34.34 10.35 0.00 3.20
838 847 1.080705 GTTACAGGCGCGTGAGAGT 60.081 57.895 34.34 15.86 0.00 3.24
839 848 1.080772 TTACAGGCGCGTGAGAGTG 60.081 57.895 34.34 9.19 0.00 3.51
840 849 1.802337 TTACAGGCGCGTGAGAGTGT 61.802 55.000 34.34 14.77 0.00 3.55
841 850 2.472232 TACAGGCGCGTGAGAGTGTG 62.472 60.000 34.34 7.66 0.00 3.82
846 855 2.661866 GCGTGAGAGTGTGCGGTT 60.662 61.111 0.00 0.00 0.00 4.44
847 856 2.244651 GCGTGAGAGTGTGCGGTTT 61.245 57.895 0.00 0.00 0.00 3.27
848 857 1.564622 CGTGAGAGTGTGCGGTTTG 59.435 57.895 0.00 0.00 0.00 2.93
849 858 1.151777 CGTGAGAGTGTGCGGTTTGT 61.152 55.000 0.00 0.00 0.00 2.83
850 859 1.860676 GTGAGAGTGTGCGGTTTGTA 58.139 50.000 0.00 0.00 0.00 2.41
851 860 1.525619 GTGAGAGTGTGCGGTTTGTAC 59.474 52.381 0.00 0.00 0.00 2.90
852 861 1.137282 TGAGAGTGTGCGGTTTGTACA 59.863 47.619 0.00 0.00 41.18 2.90
853 862 2.206750 GAGAGTGTGCGGTTTGTACAA 58.793 47.619 3.59 3.59 45.11 2.41
854 863 2.210116 AGAGTGTGCGGTTTGTACAAG 58.790 47.619 8.56 0.00 45.11 3.16
855 864 1.263217 GAGTGTGCGGTTTGTACAAGG 59.737 52.381 8.56 3.93 45.11 3.61
856 865 0.317519 GTGTGCGGTTTGTACAAGGC 60.318 55.000 8.56 13.60 45.11 4.35
857 866 1.082366 GTGCGGTTTGTACAAGGCG 60.082 57.895 8.56 4.61 32.79 5.52
858 867 1.227586 TGCGGTTTGTACAAGGCGA 60.228 52.632 8.56 3.25 0.00 5.54
859 868 0.604243 TGCGGTTTGTACAAGGCGAT 60.604 50.000 8.56 0.00 0.00 4.58
860 869 0.096454 GCGGTTTGTACAAGGCGATC 59.904 55.000 8.56 0.00 0.00 3.69
861 870 0.368907 CGGTTTGTACAAGGCGATCG 59.631 55.000 11.69 11.69 0.00 3.69
862 871 1.435577 GGTTTGTACAAGGCGATCGT 58.564 50.000 17.81 0.00 0.00 3.73
863 872 1.127951 GGTTTGTACAAGGCGATCGTG 59.872 52.381 17.81 9.82 0.00 4.35
864 873 0.793861 TTTGTACAAGGCGATCGTGC 59.206 50.000 17.81 0.00 0.00 5.34
865 874 1.348538 TTGTACAAGGCGATCGTGCG 61.349 55.000 17.81 5.74 35.06 5.34
887 896 4.753662 AGGAGGGGTCGTGCGCTA 62.754 66.667 9.73 0.00 0.00 4.26
888 897 4.208686 GGAGGGGTCGTGCGCTAG 62.209 72.222 9.73 2.04 0.00 3.42
889 898 3.138798 GAGGGGTCGTGCGCTAGA 61.139 66.667 9.73 4.93 0.00 2.43
890 899 3.127352 GAGGGGTCGTGCGCTAGAG 62.127 68.421 9.73 0.00 0.00 2.43
891 900 4.874977 GGGGTCGTGCGCTAGAGC 62.875 72.222 20.78 20.78 37.78 4.09
892 901 4.129737 GGGTCGTGCGCTAGAGCA 62.130 66.667 26.58 17.82 45.96 4.26
898 907 4.129737 TGCGCTAGAGCACGTCCC 62.130 66.667 17.82 0.00 42.92 4.46
900 909 3.506096 CGCTAGAGCACGTCCCGA 61.506 66.667 1.89 0.00 42.21 5.14
901 910 2.409651 GCTAGAGCACGTCCCGAG 59.590 66.667 0.00 0.00 41.59 4.63
902 911 2.408241 GCTAGAGCACGTCCCGAGT 61.408 63.158 0.00 0.00 41.59 4.18
903 912 1.429825 CTAGAGCACGTCCCGAGTG 59.570 63.158 0.00 0.00 42.15 3.51
904 913 1.002990 TAGAGCACGTCCCGAGTGA 60.003 57.895 0.07 0.00 41.83 3.41
905 914 1.025113 TAGAGCACGTCCCGAGTGAG 61.025 60.000 0.07 0.00 41.83 3.51
906 915 3.973267 GAGCACGTCCCGAGTGAGC 62.973 68.421 0.07 0.00 41.83 4.26
907 916 4.057428 GCACGTCCCGAGTGAGCT 62.057 66.667 0.07 0.00 41.83 4.09
908 917 2.697761 GCACGTCCCGAGTGAGCTA 61.698 63.158 0.07 0.00 41.83 3.32
909 918 1.136984 CACGTCCCGAGTGAGCTAC 59.863 63.158 0.00 0.00 41.83 3.58
910 919 1.303074 ACGTCCCGAGTGAGCTACA 60.303 57.895 0.00 0.00 0.00 2.74
911 920 0.680280 ACGTCCCGAGTGAGCTACAT 60.680 55.000 0.00 0.00 0.00 2.29
912 921 0.248661 CGTCCCGAGTGAGCTACATG 60.249 60.000 0.00 0.00 0.00 3.21
913 922 0.103208 GTCCCGAGTGAGCTACATGG 59.897 60.000 0.00 0.00 0.00 3.66
914 923 1.043116 TCCCGAGTGAGCTACATGGG 61.043 60.000 0.00 12.57 43.62 4.00
915 924 1.330655 CCCGAGTGAGCTACATGGGT 61.331 60.000 0.00 0.00 39.73 4.51
916 925 0.537188 CCGAGTGAGCTACATGGGTT 59.463 55.000 0.00 0.00 0.00 4.11
917 926 1.645034 CGAGTGAGCTACATGGGTTG 58.355 55.000 0.00 0.00 0.00 3.77
918 927 1.204704 CGAGTGAGCTACATGGGTTGA 59.795 52.381 0.00 0.00 0.00 3.18
919 928 2.622436 GAGTGAGCTACATGGGTTGAC 58.378 52.381 0.00 0.00 0.00 3.18
920 929 1.279271 AGTGAGCTACATGGGTTGACC 59.721 52.381 0.00 0.00 40.81 4.02
929 938 2.730990 TGGGTTGACCATGCAGTTG 58.269 52.632 2.12 0.00 46.80 3.16
930 939 1.290009 GGGTTGACCATGCAGTTGC 59.710 57.895 2.12 0.00 39.85 4.17
931 940 1.181098 GGGTTGACCATGCAGTTGCT 61.181 55.000 5.62 0.00 39.74 3.91
932 941 0.675633 GGTTGACCATGCAGTTGCTT 59.324 50.000 5.62 0.00 37.73 3.91
933 942 1.336240 GGTTGACCATGCAGTTGCTTC 60.336 52.381 5.62 0.00 37.73 3.86
934 943 1.610522 GTTGACCATGCAGTTGCTTCT 59.389 47.619 5.62 0.00 42.66 2.85
935 944 1.241165 TGACCATGCAGTTGCTTCTG 58.759 50.000 5.62 4.74 42.66 3.02
936 945 1.202794 TGACCATGCAGTTGCTTCTGA 60.203 47.619 11.67 0.18 42.66 3.27
937 946 1.198637 GACCATGCAGTTGCTTCTGAC 59.801 52.381 11.67 5.12 42.66 3.51
938 947 1.241165 CCATGCAGTTGCTTCTGACA 58.759 50.000 11.67 9.40 42.66 3.58
984 993 0.599728 GTCTCGATGCCAGCAGATCC 60.600 60.000 0.00 0.00 0.00 3.36
988 997 1.374190 GATGCCAGCAGATCCGGAT 59.626 57.895 19.21 19.21 0.00 4.18
1049 1058 3.702555 GCCGTGTGTGCGTCACTC 61.703 66.667 11.92 7.93 46.27 3.51
1061 1070 1.374631 GTCACTCACAGCGGCATGA 60.375 57.895 1.45 4.71 0.00 3.07
1086 1095 3.801698 AGCTCATTTGTATCAGCGATGT 58.198 40.909 0.00 0.00 36.95 3.06
1154 1163 4.637771 GGAATCTGTCCAACGGGG 57.362 61.111 0.00 0.00 46.97 5.73
1212 1221 3.589988 TCGAGAATGTTCTTTCCTCTGC 58.410 45.455 0.00 0.00 37.73 4.26
1221 1230 3.196207 TTTCCTCTGCCAAGCGCCT 62.196 57.895 2.29 0.00 36.24 5.52
1222 1231 3.612247 TTCCTCTGCCAAGCGCCTC 62.612 63.158 2.29 0.00 36.24 4.70
1301 1310 8.015087 TCTGCTTTGTGTTGAATAATAGAAACG 58.985 33.333 0.00 0.00 0.00 3.60
1488 1497 2.674420 CTTCATCCCCAGCCAATTCAT 58.326 47.619 0.00 0.00 0.00 2.57
1503 1512 6.713903 AGCCAATTCATCATGTACTTGGATAG 59.286 38.462 15.46 0.00 36.14 2.08
1578 1587 9.807649 GCCATTCATGTTAATGTTAAATCTTCT 57.192 29.630 6.43 0.00 35.48 2.85
1599 1608 8.478066 TCTTCTATCTTGTAGCATTTCTTAGCA 58.522 33.333 0.00 0.00 0.00 3.49
1603 1612 6.441093 TCTTGTAGCATTTCTTAGCATTGG 57.559 37.500 0.00 0.00 0.00 3.16
1604 1613 5.945784 TCTTGTAGCATTTCTTAGCATTGGT 59.054 36.000 0.00 0.00 0.00 3.67
1632 1641 9.862371 AGTACTACTTTTACTCATCTGTCATTG 57.138 33.333 0.00 0.00 0.00 2.82
1669 1678 8.693542 AATTTTTGAACTCAACTCAACAGAAG 57.306 30.769 0.00 0.00 35.28 2.85
1671 1680 4.487714 TGAACTCAACTCAACAGAAGGT 57.512 40.909 0.00 0.00 0.00 3.50
1687 1696 7.145932 ACAGAAGGTGATGTTTAATTGCTAC 57.854 36.000 0.00 0.00 0.00 3.58
1688 1697 6.942576 ACAGAAGGTGATGTTTAATTGCTACT 59.057 34.615 0.00 0.00 0.00 2.57
1689 1698 7.119846 ACAGAAGGTGATGTTTAATTGCTACTC 59.880 37.037 0.00 0.00 0.00 2.59
1690 1699 6.599638 AGAAGGTGATGTTTAATTGCTACTCC 59.400 38.462 0.00 0.00 0.00 3.85
1691 1700 5.193679 AGGTGATGTTTAATTGCTACTCCC 58.806 41.667 0.00 0.00 0.00 4.30
1692 1701 5.044846 AGGTGATGTTTAATTGCTACTCCCT 60.045 40.000 0.00 0.00 0.00 4.20
1693 1702 5.297029 GGTGATGTTTAATTGCTACTCCCTC 59.703 44.000 0.00 0.00 0.00 4.30
1694 1703 5.297029 GTGATGTTTAATTGCTACTCCCTCC 59.703 44.000 0.00 0.00 0.00 4.30
1695 1704 3.869065 TGTTTAATTGCTACTCCCTCCG 58.131 45.455 0.00 0.00 0.00 4.63
1696 1705 3.262405 TGTTTAATTGCTACTCCCTCCGT 59.738 43.478 0.00 0.00 0.00 4.69
1697 1706 3.814005 TTAATTGCTACTCCCTCCGTC 57.186 47.619 0.00 0.00 0.00 4.79
1698 1707 1.867363 AATTGCTACTCCCTCCGTCT 58.133 50.000 0.00 0.00 0.00 4.18
1699 1708 1.404843 ATTGCTACTCCCTCCGTCTC 58.595 55.000 0.00 0.00 0.00 3.36
1700 1709 0.039180 TTGCTACTCCCTCCGTCTCA 59.961 55.000 0.00 0.00 0.00 3.27
1701 1710 0.039180 TGCTACTCCCTCCGTCTCAA 59.961 55.000 0.00 0.00 0.00 3.02
1702 1711 1.183549 GCTACTCCCTCCGTCTCAAA 58.816 55.000 0.00 0.00 0.00 2.69
1703 1712 1.549170 GCTACTCCCTCCGTCTCAAAA 59.451 52.381 0.00 0.00 0.00 2.44
1704 1713 2.168728 GCTACTCCCTCCGTCTCAAAAT 59.831 50.000 0.00 0.00 0.00 1.82
1705 1714 3.383825 GCTACTCCCTCCGTCTCAAAATA 59.616 47.826 0.00 0.00 0.00 1.40
1706 1715 4.039366 GCTACTCCCTCCGTCTCAAAATAT 59.961 45.833 0.00 0.00 0.00 1.28
1707 1716 5.243283 GCTACTCCCTCCGTCTCAAAATATA 59.757 44.000 0.00 0.00 0.00 0.86
1708 1717 6.239232 GCTACTCCCTCCGTCTCAAAATATAA 60.239 42.308 0.00 0.00 0.00 0.98
1709 1718 6.163135 ACTCCCTCCGTCTCAAAATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
1710 1719 5.897824 ACTCCCTCCGTCTCAAAATATAAGA 59.102 40.000 0.00 0.00 0.00 2.10
1711 1720 6.383147 ACTCCCTCCGTCTCAAAATATAAGAA 59.617 38.462 0.00 0.00 0.00 2.52
1712 1721 6.579865 TCCCTCCGTCTCAAAATATAAGAAC 58.420 40.000 0.00 0.00 0.00 3.01
1713 1722 5.462398 CCCTCCGTCTCAAAATATAAGAACG 59.538 44.000 0.00 0.00 0.00 3.95
1714 1723 6.040878 CCTCCGTCTCAAAATATAAGAACGT 58.959 40.000 0.00 0.00 0.00 3.99
1715 1724 6.534079 CCTCCGTCTCAAAATATAAGAACGTT 59.466 38.462 0.00 0.00 0.00 3.99
1716 1725 7.064253 CCTCCGTCTCAAAATATAAGAACGTTT 59.936 37.037 0.46 0.00 0.00 3.60
1717 1726 8.314143 TCCGTCTCAAAATATAAGAACGTTTT 57.686 30.769 0.46 0.00 0.00 2.43
1718 1727 8.776470 TCCGTCTCAAAATATAAGAACGTTTTT 58.224 29.630 9.22 9.22 0.00 1.94
1719 1728 8.837059 CCGTCTCAAAATATAAGAACGTTTTTG 58.163 33.333 13.87 12.46 38.17 2.44
1720 1729 9.588774 CGTCTCAAAATATAAGAACGTTTTTGA 57.411 29.630 13.87 15.56 41.45 2.69
1732 1741 7.781548 AGAACGTTTTTGACACTAATGTAGT 57.218 32.000 0.46 0.00 39.95 2.73
1746 1755 7.781548 ACTAATGTAGTGTCAAAAACGTTCT 57.218 32.000 0.00 0.00 37.69 3.01
1747 1756 8.205131 ACTAATGTAGTGTCAAAAACGTTCTT 57.795 30.769 0.00 0.00 37.69 2.52
1748 1757 9.316730 ACTAATGTAGTGTCAAAAACGTTCTTA 57.683 29.630 0.00 0.00 37.69 2.10
1756 1765 8.437742 AGTGTCAAAAACGTTCTTATATTACGG 58.562 33.333 0.00 0.00 39.45 4.02
1757 1766 7.689400 GTGTCAAAAACGTTCTTATATTACGGG 59.311 37.037 0.00 0.00 39.45 5.28
1758 1767 6.684131 GTCAAAAACGTTCTTATATTACGGGC 59.316 38.462 0.00 0.00 39.45 6.13
1759 1768 5.739752 AAAACGTTCTTATATTACGGGCC 57.260 39.130 0.00 0.00 39.45 5.80
1760 1769 3.017265 ACGTTCTTATATTACGGGCCG 57.983 47.619 27.06 27.06 39.45 6.13
1761 1770 2.288395 ACGTTCTTATATTACGGGCCGG 60.288 50.000 31.78 12.53 39.45 6.13
1762 1771 2.030007 CGTTCTTATATTACGGGCCGGA 60.030 50.000 31.78 21.84 0.00 5.14
1763 1772 3.582780 GTTCTTATATTACGGGCCGGAG 58.417 50.000 31.78 8.92 0.00 4.63
1781 1790 5.986501 CGGAGGGAGTAGATAATAAGCTT 57.013 43.478 3.48 3.48 0.00 3.74
1840 1849 5.655488 TCTTGTAAACCATGGTTTGTTGTG 58.345 37.500 40.72 28.12 46.34 3.33
1858 1867 4.006780 TGTGTCACATCATAGCAACACT 57.993 40.909 0.18 0.00 38.22 3.55
1879 1888 4.153958 TCAATGTTGTGTAAATGGCGAC 57.846 40.909 0.00 0.00 0.00 5.19
1881 1890 4.083537 TCAATGTTGTGTAAATGGCGACTC 60.084 41.667 0.00 0.00 0.00 3.36
1882 1891 2.839975 TGTTGTGTAAATGGCGACTCA 58.160 42.857 0.00 0.00 0.00 3.41
1897 1906 9.736023 AATGGCGACTCAATCTTTTAAATATTC 57.264 29.630 0.00 0.00 0.00 1.75
1923 1932 9.559958 CATTAGTCATCCGATTTTTAATATGGC 57.440 33.333 0.00 0.00 0.00 4.40
1944 1953 5.360144 TGGCAGTTATACTCTGTACTTCCTC 59.640 44.000 0.00 0.00 35.60 3.71
1948 1957 8.347035 GCAGTTATACTCTGTACTTCCTCTTAG 58.653 40.741 0.00 0.00 35.60 2.18
1964 1973 6.838382 TCCTCTTAGTTATATTTCCCTTGGC 58.162 40.000 0.00 0.00 0.00 4.52
1966 1975 7.073725 TCCTCTTAGTTATATTTCCCTTGGCAT 59.926 37.037 0.00 0.00 0.00 4.40
2035 4193 9.631452 CTTGAACATGATATCAGTATCGTACAT 57.369 33.333 11.78 0.00 39.69 2.29
2084 4242 8.807948 AGACATTATTAGGCAGTGTAAAACAT 57.192 30.769 0.00 0.00 0.00 2.71
2137 4295 8.700644 CAAGTAGTACTACTAAAGCAAACACTG 58.299 37.037 30.89 18.51 44.96 3.66
2139 4297 8.804204 AGTAGTACTACTAAAGCAAACACTGAT 58.196 33.333 29.96 4.00 43.98 2.90
2140 4298 9.420551 GTAGTACTACTAAAGCAAACACTGATT 57.579 33.333 23.17 0.00 31.62 2.57
2141 4299 8.904099 AGTACTACTAAAGCAAACACTGATTT 57.096 30.769 0.00 0.00 45.41 2.17
2142 4300 8.989980 AGTACTACTAAAGCAAACACTGATTTC 58.010 33.333 0.00 0.00 39.43 2.17
2143 4301 7.801716 ACTACTAAAGCAAACACTGATTTCA 57.198 32.000 0.00 0.00 39.43 2.69
2144 4302 8.396272 ACTACTAAAGCAAACACTGATTTCAT 57.604 30.769 0.00 0.00 39.43 2.57
2145 4303 9.502091 ACTACTAAAGCAAACACTGATTTCATA 57.498 29.630 0.00 0.00 39.43 2.15
2174 4334 8.091385 TCATGTAACAATATGTCTCATGCATC 57.909 34.615 0.00 0.00 39.18 3.91
2249 5938 3.504134 TCTCTTCGATCAGGTAGCATAGC 59.496 47.826 0.00 0.00 39.93 2.97
2368 6057 3.382048 ACGAAAACAGAGGGAGTACAC 57.618 47.619 0.00 0.00 0.00 2.90
2438 6129 5.295292 CACTTTGTGTCATAAGGGCTATCTG 59.705 44.000 0.00 0.00 0.00 2.90
2439 6130 3.475566 TGTGTCATAAGGGCTATCTGC 57.524 47.619 0.00 0.00 41.94 4.26
2843 6534 5.932303 TCTGGACTGCGCTTATATATTTTCC 59.068 40.000 9.73 0.03 0.00 3.13
2874 6565 7.133891 ACTTATGTTTGCATCTCACACTAAC 57.866 36.000 0.00 0.00 36.58 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 157 3.900601 ACTTGTTGGGTTGGCATATTTCA 59.099 39.130 0.00 0.00 0.00 2.69
264 266 5.604231 TGACTATGAGATTATGCAACTCCCT 59.396 40.000 0.00 0.00 0.00 4.20
417 419 5.692115 TGTTTCCTAGCCATAGACATGAA 57.308 39.130 0.00 0.00 33.67 2.57
632 634 2.125225 ACCTCCCCCACTTCCTCC 59.875 66.667 0.00 0.00 0.00 4.30
634 636 2.204151 CCACCTCCCCCACTTCCT 60.204 66.667 0.00 0.00 0.00 3.36
659 668 1.821332 CAATGGCGGCTCCTTCTCC 60.821 63.158 11.43 0.00 35.26 3.71
660 669 0.678048 AACAATGGCGGCTCCTTCTC 60.678 55.000 11.43 0.00 35.26 2.87
661 670 0.962356 CAACAATGGCGGCTCCTTCT 60.962 55.000 11.43 0.00 35.26 2.85
662 671 1.508088 CAACAATGGCGGCTCCTTC 59.492 57.895 11.43 0.00 35.26 3.46
663 672 2.639327 GCAACAATGGCGGCTCCTT 61.639 57.895 11.43 0.00 35.26 3.36
664 673 3.064324 GCAACAATGGCGGCTCCT 61.064 61.111 11.43 0.00 35.26 3.69
671 680 4.481112 CGAGCCCGCAACAATGGC 62.481 66.667 0.00 0.00 45.70 4.40
672 681 3.814268 CCGAGCCCGCAACAATGG 61.814 66.667 0.00 0.00 0.00 3.16
673 682 2.745884 TCCGAGCCCGCAACAATG 60.746 61.111 0.00 0.00 0.00 2.82
674 683 2.436646 CTCCGAGCCCGCAACAAT 60.437 61.111 0.00 0.00 0.00 2.71
675 684 3.621805 TCTCCGAGCCCGCAACAA 61.622 61.111 0.00 0.00 0.00 2.83
676 685 4.373116 GTCTCCGAGCCCGCAACA 62.373 66.667 0.00 0.00 0.00 3.33
688 697 3.708220 CTTCCGCTGCCTCGTCTCC 62.708 68.421 0.00 0.00 0.00 3.71
689 698 2.202676 CTTCCGCTGCCTCGTCTC 60.203 66.667 0.00 0.00 0.00 3.36
690 699 4.443266 GCTTCCGCTGCCTCGTCT 62.443 66.667 0.00 0.00 0.00 4.18
691 700 4.443266 AGCTTCCGCTGCCTCGTC 62.443 66.667 0.00 0.00 46.86 4.20
700 709 0.741221 CTGTAACCTCCAGCTTCCGC 60.741 60.000 0.00 0.00 0.00 5.54
701 710 0.895530 TCTGTAACCTCCAGCTTCCG 59.104 55.000 0.00 0.00 0.00 4.30
702 711 1.623811 TGTCTGTAACCTCCAGCTTCC 59.376 52.381 0.00 0.00 0.00 3.46
703 712 2.354203 CCTGTCTGTAACCTCCAGCTTC 60.354 54.545 0.00 0.00 0.00 3.86
704 713 1.625818 CCTGTCTGTAACCTCCAGCTT 59.374 52.381 0.00 0.00 0.00 3.74
705 714 1.270907 CCTGTCTGTAACCTCCAGCT 58.729 55.000 0.00 0.00 0.00 4.24
706 715 0.250513 CCCTGTCTGTAACCTCCAGC 59.749 60.000 0.00 0.00 0.00 4.85
707 716 0.905357 CCCCTGTCTGTAACCTCCAG 59.095 60.000 0.00 0.00 0.00 3.86
708 717 0.490017 TCCCCTGTCTGTAACCTCCA 59.510 55.000 0.00 0.00 0.00 3.86
709 718 1.486726 CATCCCCTGTCTGTAACCTCC 59.513 57.143 0.00 0.00 0.00 4.30
710 719 1.486726 CCATCCCCTGTCTGTAACCTC 59.513 57.143 0.00 0.00 0.00 3.85
711 720 1.080498 TCCATCCCCTGTCTGTAACCT 59.920 52.381 0.00 0.00 0.00 3.50
712 721 1.580059 TCCATCCCCTGTCTGTAACC 58.420 55.000 0.00 0.00 0.00 2.85
713 722 2.355818 GGTTCCATCCCCTGTCTGTAAC 60.356 54.545 0.00 0.00 0.00 2.50
714 723 1.913419 GGTTCCATCCCCTGTCTGTAA 59.087 52.381 0.00 0.00 0.00 2.41
715 724 1.580059 GGTTCCATCCCCTGTCTGTA 58.420 55.000 0.00 0.00 0.00 2.74
716 725 1.553690 CGGTTCCATCCCCTGTCTGT 61.554 60.000 0.00 0.00 0.00 3.41
717 726 1.221840 CGGTTCCATCCCCTGTCTG 59.778 63.158 0.00 0.00 0.00 3.51
718 727 1.995626 CCGGTTCCATCCCCTGTCT 60.996 63.158 0.00 0.00 0.00 3.41
719 728 2.590092 CCGGTTCCATCCCCTGTC 59.410 66.667 0.00 0.00 0.00 3.51
720 729 3.728373 GCCGGTTCCATCCCCTGT 61.728 66.667 1.90 0.00 0.00 4.00
721 730 4.856801 CGCCGGTTCCATCCCCTG 62.857 72.222 1.90 0.00 0.00 4.45
723 732 4.851179 GACGCCGGTTCCATCCCC 62.851 72.222 1.90 0.00 0.00 4.81
724 733 3.782443 AGACGCCGGTTCCATCCC 61.782 66.667 1.90 0.00 0.00 3.85
725 734 2.311688 ATCAGACGCCGGTTCCATCC 62.312 60.000 1.90 0.00 0.00 3.51
726 735 0.387929 TATCAGACGCCGGTTCCATC 59.612 55.000 1.90 0.00 0.00 3.51
727 736 0.104304 GTATCAGACGCCGGTTCCAT 59.896 55.000 1.90 0.00 0.00 3.41
728 737 1.514087 GTATCAGACGCCGGTTCCA 59.486 57.895 1.90 0.00 0.00 3.53
729 738 1.227176 GGTATCAGACGCCGGTTCC 60.227 63.158 1.90 0.00 0.00 3.62
730 739 0.104304 ATGGTATCAGACGCCGGTTC 59.896 55.000 1.90 0.00 0.00 3.62
731 740 0.179084 CATGGTATCAGACGCCGGTT 60.179 55.000 1.90 0.00 0.00 4.44
732 741 1.441729 CATGGTATCAGACGCCGGT 59.558 57.895 1.90 0.00 0.00 5.28
733 742 1.956170 GCATGGTATCAGACGCCGG 60.956 63.158 0.00 0.00 0.00 6.13
734 743 2.302952 CGCATGGTATCAGACGCCG 61.303 63.158 0.00 0.00 0.00 6.46
735 744 0.941463 CTCGCATGGTATCAGACGCC 60.941 60.000 0.00 0.00 0.00 5.68
736 745 1.552348 GCTCGCATGGTATCAGACGC 61.552 60.000 0.00 0.00 0.00 5.19
737 746 1.271446 CGCTCGCATGGTATCAGACG 61.271 60.000 0.00 0.00 0.00 4.18
738 747 0.030773 TCGCTCGCATGGTATCAGAC 59.969 55.000 0.00 0.00 0.00 3.51
739 748 0.312102 CTCGCTCGCATGGTATCAGA 59.688 55.000 0.00 0.00 0.00 3.27
740 749 0.312102 TCTCGCTCGCATGGTATCAG 59.688 55.000 0.00 0.00 0.00 2.90
741 750 0.312102 CTCTCGCTCGCATGGTATCA 59.688 55.000 0.00 0.00 0.00 2.15
742 751 0.593618 TCTCTCGCTCGCATGGTATC 59.406 55.000 0.00 0.00 0.00 2.24
743 752 0.595588 CTCTCTCGCTCGCATGGTAT 59.404 55.000 0.00 0.00 0.00 2.73
744 753 1.448119 CCTCTCTCGCTCGCATGGTA 61.448 60.000 0.00 0.00 0.00 3.25
745 754 2.780094 CCTCTCTCGCTCGCATGGT 61.780 63.158 0.00 0.00 0.00 3.55
746 755 2.009424 TTCCTCTCTCGCTCGCATGG 62.009 60.000 0.00 0.00 0.00 3.66
747 756 0.179127 TTTCCTCTCTCGCTCGCATG 60.179 55.000 0.00 0.00 0.00 4.06
748 757 0.532573 TTTTCCTCTCTCGCTCGCAT 59.467 50.000 0.00 0.00 0.00 4.73
749 758 0.317160 TTTTTCCTCTCTCGCTCGCA 59.683 50.000 0.00 0.00 0.00 5.10
750 759 3.123674 TTTTTCCTCTCTCGCTCGC 57.876 52.632 0.00 0.00 0.00 5.03
765 774 2.232208 GCAAGGTGCCTAGCTCATTTTT 59.768 45.455 0.00 0.00 37.42 1.94
766 775 1.821136 GCAAGGTGCCTAGCTCATTTT 59.179 47.619 0.00 0.00 37.42 1.82
767 776 1.467920 GCAAGGTGCCTAGCTCATTT 58.532 50.000 0.00 0.00 37.42 2.32
768 777 0.745845 CGCAAGGTGCCTAGCTCATT 60.746 55.000 0.00 0.00 41.12 2.57
769 778 1.153289 CGCAAGGTGCCTAGCTCAT 60.153 57.895 0.00 0.00 41.12 2.90
770 779 2.265739 CGCAAGGTGCCTAGCTCA 59.734 61.111 0.00 0.00 41.12 4.26
782 791 2.786539 TACAGCAGCAGGACCGCAAG 62.787 60.000 10.28 4.43 0.00 4.01
783 792 2.184020 ATACAGCAGCAGGACCGCAA 62.184 55.000 10.28 0.00 0.00 4.85
784 793 2.184020 AATACAGCAGCAGGACCGCA 62.184 55.000 10.28 0.00 0.00 5.69
785 794 1.450312 AATACAGCAGCAGGACCGC 60.450 57.895 0.00 0.68 0.00 5.68
786 795 0.108186 TCAATACAGCAGCAGGACCG 60.108 55.000 0.00 0.00 0.00 4.79
787 796 1.740025 GTTCAATACAGCAGCAGGACC 59.260 52.381 0.00 0.00 0.00 4.46
788 797 2.675348 GAGTTCAATACAGCAGCAGGAC 59.325 50.000 0.00 0.00 0.00 3.85
789 798 2.675032 CGAGTTCAATACAGCAGCAGGA 60.675 50.000 0.00 0.00 0.00 3.86
790 799 1.662629 CGAGTTCAATACAGCAGCAGG 59.337 52.381 0.00 0.00 0.00 4.85
791 800 2.341257 ACGAGTTCAATACAGCAGCAG 58.659 47.619 0.00 0.00 0.00 4.24
792 801 2.455674 ACGAGTTCAATACAGCAGCA 57.544 45.000 0.00 0.00 0.00 4.41
793 802 7.755373 TCATATATACGAGTTCAATACAGCAGC 59.245 37.037 0.00 0.00 0.00 5.25
794 803 9.283420 CTCATATATACGAGTTCAATACAGCAG 57.717 37.037 0.00 0.00 0.00 4.24
795 804 8.793592 ACTCATATATACGAGTTCAATACAGCA 58.206 33.333 5.65 0.00 39.45 4.41
796 805 9.627395 AACTCATATATACGAGTTCAATACAGC 57.373 33.333 16.47 0.00 46.90 4.40
802 811 8.080417 GCCTGTAACTCATATATACGAGTTCAA 58.920 37.037 23.48 14.01 46.90 2.69
803 812 7.572539 CGCCTGTAACTCATATATACGAGTTCA 60.573 40.741 23.48 19.08 46.90 3.18
804 813 6.741811 CGCCTGTAACTCATATATACGAGTTC 59.258 42.308 23.48 16.39 46.90 3.01
806 815 5.391736 GCGCCTGTAACTCATATATACGAGT 60.392 44.000 5.65 5.65 44.30 4.18
807 816 5.029014 GCGCCTGTAACTCATATATACGAG 58.971 45.833 4.30 4.30 35.30 4.18
808 817 4.436451 CGCGCCTGTAACTCATATATACGA 60.436 45.833 0.00 0.00 0.00 3.43
809 818 3.784468 CGCGCCTGTAACTCATATATACG 59.216 47.826 0.00 0.00 0.00 3.06
810 819 4.557690 CACGCGCCTGTAACTCATATATAC 59.442 45.833 5.73 0.00 0.00 1.47
811 820 4.456566 TCACGCGCCTGTAACTCATATATA 59.543 41.667 5.73 0.00 0.00 0.86
812 821 3.254903 TCACGCGCCTGTAACTCATATAT 59.745 43.478 5.73 0.00 0.00 0.86
813 822 2.619646 TCACGCGCCTGTAACTCATATA 59.380 45.455 5.73 0.00 0.00 0.86
814 823 1.407618 TCACGCGCCTGTAACTCATAT 59.592 47.619 5.73 0.00 0.00 1.78
815 824 0.812549 TCACGCGCCTGTAACTCATA 59.187 50.000 5.73 0.00 0.00 2.15
816 825 0.458543 CTCACGCGCCTGTAACTCAT 60.459 55.000 5.73 0.00 0.00 2.90
817 826 1.080772 CTCACGCGCCTGTAACTCA 60.081 57.895 5.73 0.00 0.00 3.41
818 827 0.798771 CTCTCACGCGCCTGTAACTC 60.799 60.000 5.73 0.00 0.00 3.01
819 828 1.213013 CTCTCACGCGCCTGTAACT 59.787 57.895 5.73 0.00 0.00 2.24
820 829 1.080705 ACTCTCACGCGCCTGTAAC 60.081 57.895 5.73 0.00 0.00 2.50
821 830 1.080772 CACTCTCACGCGCCTGTAA 60.081 57.895 5.73 0.00 0.00 2.41
822 831 2.265904 ACACTCTCACGCGCCTGTA 61.266 57.895 5.73 0.00 0.00 2.74
823 832 3.606662 ACACTCTCACGCGCCTGT 61.607 61.111 5.73 0.00 0.00 4.00
824 833 3.108289 CACACTCTCACGCGCCTG 61.108 66.667 5.73 0.00 0.00 4.85
829 838 2.244651 AAACCGCACACTCTCACGC 61.245 57.895 0.00 0.00 0.00 5.34
830 839 1.151777 ACAAACCGCACACTCTCACG 61.152 55.000 0.00 0.00 0.00 4.35
831 840 1.525619 GTACAAACCGCACACTCTCAC 59.474 52.381 0.00 0.00 0.00 3.51
832 841 1.137282 TGTACAAACCGCACACTCTCA 59.863 47.619 0.00 0.00 0.00 3.27
833 842 1.860676 TGTACAAACCGCACACTCTC 58.139 50.000 0.00 0.00 0.00 3.20
834 843 2.210116 CTTGTACAAACCGCACACTCT 58.790 47.619 10.03 0.00 0.00 3.24
835 844 1.263217 CCTTGTACAAACCGCACACTC 59.737 52.381 10.03 0.00 0.00 3.51
836 845 1.305201 CCTTGTACAAACCGCACACT 58.695 50.000 10.03 0.00 0.00 3.55
837 846 0.317519 GCCTTGTACAAACCGCACAC 60.318 55.000 10.03 0.00 0.00 3.82
838 847 1.777030 CGCCTTGTACAAACCGCACA 61.777 55.000 10.03 0.00 0.00 4.57
839 848 1.082366 CGCCTTGTACAAACCGCAC 60.082 57.895 10.03 0.00 0.00 5.34
840 849 0.604243 ATCGCCTTGTACAAACCGCA 60.604 50.000 17.80 10.40 0.00 5.69
841 850 0.096454 GATCGCCTTGTACAAACCGC 59.904 55.000 17.80 14.23 0.00 5.68
842 851 0.368907 CGATCGCCTTGTACAAACCG 59.631 55.000 10.03 14.22 0.00 4.44
843 852 1.127951 CACGATCGCCTTGTACAAACC 59.872 52.381 16.60 2.63 0.00 3.27
844 853 1.463528 GCACGATCGCCTTGTACAAAC 60.464 52.381 16.60 4.08 0.00 2.93
845 854 0.793861 GCACGATCGCCTTGTACAAA 59.206 50.000 16.60 0.00 0.00 2.83
846 855 1.348538 CGCACGATCGCCTTGTACAA 61.349 55.000 16.60 8.28 0.00 2.41
847 856 1.803922 CGCACGATCGCCTTGTACA 60.804 57.895 16.60 0.00 0.00 2.90
848 857 2.995482 CGCACGATCGCCTTGTAC 59.005 61.111 16.60 0.00 0.00 2.90
870 879 4.753662 TAGCGCACGACCCCTCCT 62.754 66.667 11.47 0.00 0.00 3.69
871 880 4.208686 CTAGCGCACGACCCCTCC 62.209 72.222 11.47 0.00 0.00 4.30
872 881 3.127352 CTCTAGCGCACGACCCCTC 62.127 68.421 11.47 0.00 0.00 4.30
873 882 3.141488 CTCTAGCGCACGACCCCT 61.141 66.667 11.47 0.00 0.00 4.79
874 883 4.874977 GCTCTAGCGCACGACCCC 62.875 72.222 11.47 0.00 0.00 4.95
875 884 4.129737 TGCTCTAGCGCACGACCC 62.130 66.667 11.47 0.00 45.83 4.46
894 903 0.103208 CCATGTAGCTCACTCGGGAC 59.897 60.000 0.00 0.00 0.00 4.46
895 904 1.043116 CCCATGTAGCTCACTCGGGA 61.043 60.000 0.00 0.00 40.13 5.14
896 905 1.330655 ACCCATGTAGCTCACTCGGG 61.331 60.000 0.00 0.00 42.19 5.14
897 906 0.537188 AACCCATGTAGCTCACTCGG 59.463 55.000 0.00 0.00 0.00 4.63
898 907 1.204704 TCAACCCATGTAGCTCACTCG 59.795 52.381 0.00 0.00 0.00 4.18
899 908 2.622436 GTCAACCCATGTAGCTCACTC 58.378 52.381 0.00 0.00 0.00 3.51
900 909 1.279271 GGTCAACCCATGTAGCTCACT 59.721 52.381 0.00 0.00 0.00 3.41
901 910 1.003118 TGGTCAACCCATGTAGCTCAC 59.997 52.381 0.00 0.00 38.72 3.51
902 911 1.357137 TGGTCAACCCATGTAGCTCA 58.643 50.000 0.00 0.00 38.72 4.26
911 920 3.829927 AGCAACTGCATGGTCAACCCA 62.830 52.381 4.22 0.00 45.16 4.51
912 921 1.181098 AGCAACTGCATGGTCAACCC 61.181 55.000 4.22 0.00 45.16 4.11
913 922 0.675633 AAGCAACTGCATGGTCAACC 59.324 50.000 4.22 0.00 45.16 3.77
914 923 1.610522 AGAAGCAACTGCATGGTCAAC 59.389 47.619 4.22 0.00 45.16 3.18
915 924 1.610038 CAGAAGCAACTGCATGGTCAA 59.390 47.619 4.22 0.00 45.16 3.18
916 925 1.202794 TCAGAAGCAACTGCATGGTCA 60.203 47.619 4.22 0.00 45.16 4.02
917 926 1.198637 GTCAGAAGCAACTGCATGGTC 59.801 52.381 4.22 0.00 45.16 4.02
918 927 1.242076 GTCAGAAGCAACTGCATGGT 58.758 50.000 4.22 0.00 45.16 3.55
919 928 1.199327 CTGTCAGAAGCAACTGCATGG 59.801 52.381 4.22 0.00 45.16 3.66
920 929 2.148768 TCTGTCAGAAGCAACTGCATG 58.851 47.619 0.00 0.24 45.16 4.06
921 930 2.038164 TCTCTGTCAGAAGCAACTGCAT 59.962 45.455 3.67 0.00 45.16 3.96
922 931 1.413812 TCTCTGTCAGAAGCAACTGCA 59.586 47.619 3.67 0.00 45.16 4.41
923 932 2.160822 TCTCTGTCAGAAGCAACTGC 57.839 50.000 3.67 0.00 42.49 4.40
924 933 4.191033 AGATCTCTGTCAGAAGCAACTG 57.809 45.455 3.67 4.17 39.02 3.16
925 934 4.888326 AAGATCTCTGTCAGAAGCAACT 57.112 40.909 3.67 0.00 33.62 3.16
926 935 5.473931 TGTAAGATCTCTGTCAGAAGCAAC 58.526 41.667 3.67 0.00 33.62 4.17
927 936 5.728637 TGTAAGATCTCTGTCAGAAGCAA 57.271 39.130 3.67 0.00 33.62 3.91
928 937 5.337089 CCTTGTAAGATCTCTGTCAGAAGCA 60.337 44.000 3.67 0.00 33.62 3.91
929 938 5.108517 CCTTGTAAGATCTCTGTCAGAAGC 58.891 45.833 3.67 0.00 33.62 3.86
930 939 5.108517 GCCTTGTAAGATCTCTGTCAGAAG 58.891 45.833 3.67 0.00 33.62 2.85
931 940 4.081420 GGCCTTGTAAGATCTCTGTCAGAA 60.081 45.833 3.67 0.00 33.62 3.02
932 941 3.449018 GGCCTTGTAAGATCTCTGTCAGA 59.551 47.826 1.78 1.78 34.78 3.27
933 942 3.736433 CGGCCTTGTAAGATCTCTGTCAG 60.736 52.174 0.00 0.00 0.00 3.51
934 943 2.166459 CGGCCTTGTAAGATCTCTGTCA 59.834 50.000 0.00 0.00 0.00 3.58
935 944 2.815478 CGGCCTTGTAAGATCTCTGTC 58.185 52.381 0.00 0.00 0.00 3.51
936 945 1.134670 GCGGCCTTGTAAGATCTCTGT 60.135 52.381 0.00 0.00 0.00 3.41
937 946 1.576356 GCGGCCTTGTAAGATCTCTG 58.424 55.000 0.00 0.00 0.00 3.35
938 947 0.466124 GGCGGCCTTGTAAGATCTCT 59.534 55.000 12.87 0.00 0.00 3.10
984 993 5.575995 TCAATATAGAGACGACGAGTATCCG 59.424 44.000 0.00 0.00 41.77 4.18
988 997 4.993584 GGGTCAATATAGAGACGACGAGTA 59.006 45.833 0.00 0.00 35.63 2.59
1042 1051 2.433145 ATGCCGCTGTGAGTGACG 60.433 61.111 0.00 0.00 0.00 4.35
1049 1058 1.003116 GAGCTTAATCATGCCGCTGTG 60.003 52.381 0.00 0.00 0.00 3.66
1061 1070 6.484643 ACATCGCTGATACAAATGAGCTTAAT 59.515 34.615 0.00 0.00 39.90 1.40
1166 1175 2.428925 GGGCTTCCATGGTGGCATG 61.429 63.158 25.60 7.72 37.47 4.06
1222 1231 3.951769 CTTTGGCAGGAGCAGGGGG 62.952 68.421 0.00 0.00 44.61 5.40
1225 1234 0.600057 GAAACTTTGGCAGGAGCAGG 59.400 55.000 0.00 0.00 44.61 4.85
1301 1310 1.876156 CTCAACCAGCCAGAAAGTGTC 59.124 52.381 0.00 0.00 0.00 3.67
1488 1497 3.496692 GGCATGCCTATCCAAGTACATGA 60.497 47.826 29.98 0.00 38.93 3.07
1503 1512 3.825143 AATACCTTTTGATGGCATGCC 57.175 42.857 30.54 30.54 0.00 4.40
1578 1587 7.775093 ACCAATGCTAAGAAATGCTACAAGATA 59.225 33.333 0.00 0.00 0.00 1.98
1669 1678 5.193679 AGGGAGTAGCAATTAAACATCACC 58.806 41.667 0.00 0.00 0.00 4.02
1671 1680 5.437060 GGAGGGAGTAGCAATTAAACATCA 58.563 41.667 0.00 0.00 0.00 3.07
1687 1696 6.406692 TCTTATATTTTGAGACGGAGGGAG 57.593 41.667 0.00 0.00 0.00 4.30
1688 1697 6.579865 GTTCTTATATTTTGAGACGGAGGGA 58.420 40.000 0.00 0.00 0.00 4.20
1689 1698 5.462398 CGTTCTTATATTTTGAGACGGAGGG 59.538 44.000 0.00 0.00 0.00 4.30
1690 1699 6.040878 ACGTTCTTATATTTTGAGACGGAGG 58.959 40.000 0.00 0.00 0.00 4.30
1691 1700 7.521509 AACGTTCTTATATTTTGAGACGGAG 57.478 36.000 0.00 0.00 0.00 4.63
1692 1701 7.894376 AAACGTTCTTATATTTTGAGACGGA 57.106 32.000 0.00 0.00 0.00 4.69
1693 1702 8.837059 CAAAAACGTTCTTATATTTTGAGACGG 58.163 33.333 11.95 0.00 41.26 4.79
1694 1703 9.588774 TCAAAAACGTTCTTATATTTTGAGACG 57.411 29.630 14.74 0.00 42.07 4.18
1706 1715 9.316730 ACTACATTAGTGTCAAAAACGTTCTTA 57.683 29.630 0.00 0.00 39.77 2.10
1707 1716 8.205131 ACTACATTAGTGTCAAAAACGTTCTT 57.795 30.769 0.00 0.00 39.77 2.52
1708 1717 7.781548 ACTACATTAGTGTCAAAAACGTTCT 57.218 32.000 0.00 0.00 39.77 3.01
1722 1731 7.781548 AGAACGTTTTTGACACTACATTAGT 57.218 32.000 0.46 0.00 40.28 2.24
1730 1739 8.437742 CCGTAATATAAGAACGTTTTTGACACT 58.562 33.333 13.87 0.00 34.90 3.55
1731 1740 7.689400 CCCGTAATATAAGAACGTTTTTGACAC 59.311 37.037 13.87 4.53 34.90 3.67
1732 1741 7.623925 GCCCGTAATATAAGAACGTTTTTGACA 60.624 37.037 13.87 0.01 34.90 3.58
1733 1742 6.684131 GCCCGTAATATAAGAACGTTTTTGAC 59.316 38.462 13.87 4.05 34.90 3.18
1734 1743 6.183360 GGCCCGTAATATAAGAACGTTTTTGA 60.183 38.462 13.87 2.81 34.90 2.69
1735 1744 5.967088 GGCCCGTAATATAAGAACGTTTTTG 59.033 40.000 13.87 0.00 34.90 2.44
1736 1745 5.220643 CGGCCCGTAATATAAGAACGTTTTT 60.221 40.000 9.22 9.22 34.90 1.94
1737 1746 4.270808 CGGCCCGTAATATAAGAACGTTTT 59.729 41.667 0.46 0.00 34.90 2.43
1738 1747 3.803778 CGGCCCGTAATATAAGAACGTTT 59.196 43.478 0.46 0.00 34.90 3.60
1739 1748 3.383761 CGGCCCGTAATATAAGAACGTT 58.616 45.455 0.00 0.00 34.90 3.99
1740 1749 2.288395 CCGGCCCGTAATATAAGAACGT 60.288 50.000 0.85 0.00 34.90 3.99
1741 1750 2.030007 TCCGGCCCGTAATATAAGAACG 60.030 50.000 0.85 0.00 36.42 3.95
1742 1751 3.582780 CTCCGGCCCGTAATATAAGAAC 58.417 50.000 0.85 0.00 0.00 3.01
1743 1752 2.564062 CCTCCGGCCCGTAATATAAGAA 59.436 50.000 0.85 0.00 0.00 2.52
1744 1753 2.173519 CCTCCGGCCCGTAATATAAGA 58.826 52.381 0.85 0.00 0.00 2.10
1745 1754 1.206371 CCCTCCGGCCCGTAATATAAG 59.794 57.143 0.85 0.00 0.00 1.73
1746 1755 1.203162 TCCCTCCGGCCCGTAATATAA 60.203 52.381 0.85 0.00 0.00 0.98
1747 1756 0.409092 TCCCTCCGGCCCGTAATATA 59.591 55.000 0.85 0.00 0.00 0.86
1748 1757 0.903454 CTCCCTCCGGCCCGTAATAT 60.903 60.000 0.85 0.00 0.00 1.28
1749 1758 1.532316 CTCCCTCCGGCCCGTAATA 60.532 63.158 0.85 0.00 0.00 0.98
1750 1759 2.302517 TACTCCCTCCGGCCCGTAAT 62.303 60.000 0.85 0.00 0.00 1.89
1751 1760 2.916527 CTACTCCCTCCGGCCCGTAA 62.917 65.000 0.85 0.00 0.00 3.18
1752 1761 3.419580 TACTCCCTCCGGCCCGTA 61.420 66.667 0.85 0.00 0.00 4.02
1753 1762 4.835891 CTACTCCCTCCGGCCCGT 62.836 72.222 0.85 0.00 0.00 5.28
1754 1763 2.421923 TATCTACTCCCTCCGGCCCG 62.422 65.000 0.00 0.00 0.00 6.13
1755 1764 0.178941 TTATCTACTCCCTCCGGCCC 60.179 60.000 0.00 0.00 0.00 5.80
1756 1765 1.939980 ATTATCTACTCCCTCCGGCC 58.060 55.000 0.00 0.00 0.00 6.13
1757 1766 3.119065 GCTTATTATCTACTCCCTCCGGC 60.119 52.174 0.00 0.00 0.00 6.13
1758 1767 4.345854 AGCTTATTATCTACTCCCTCCGG 58.654 47.826 0.00 0.00 0.00 5.14
1759 1768 5.986501 AAGCTTATTATCTACTCCCTCCG 57.013 43.478 0.00 0.00 0.00 4.63
1760 1769 9.138596 CCTATAAGCTTATTATCTACTCCCTCC 57.861 40.741 23.47 0.00 0.00 4.30
1761 1770 9.924010 TCCTATAAGCTTATTATCTACTCCCTC 57.076 37.037 23.47 0.00 0.00 4.30
1819 1828 5.047306 TGACACAACAAACCATGGTTTACAA 60.047 36.000 36.22 16.71 45.32 2.41
1840 1849 5.122869 ACATTGAGTGTTGCTATGATGTGAC 59.877 40.000 0.00 0.00 38.01 3.67
1858 1867 3.818210 AGTCGCCATTTACACAACATTGA 59.182 39.130 0.00 0.00 0.00 2.57
1865 1874 3.937814 AGATTGAGTCGCCATTTACACA 58.062 40.909 0.00 0.00 0.00 3.72
1866 1875 4.946784 AAGATTGAGTCGCCATTTACAC 57.053 40.909 0.00 0.00 0.00 2.90
1874 1883 9.736023 AATGAATATTTAAAAGATTGAGTCGCC 57.264 29.630 0.00 0.00 0.00 5.54
1897 1906 9.559958 GCCATATTAAAAATCGGATGACTAATG 57.440 33.333 0.00 0.00 0.00 1.90
1923 1932 9.398538 ACTAAGAGGAAGTACAGAGTATAACTG 57.601 37.037 0.00 6.64 40.68 3.16
1941 1950 6.601332 TGCCAAGGGAAATATAACTAAGAGG 58.399 40.000 0.00 0.00 0.00 3.69
1944 1953 8.463930 TTGATGCCAAGGGAAATATAACTAAG 57.536 34.615 0.00 0.00 0.00 2.18
2035 4193 8.533657 TCTTTATTCAATTACCTGACCGAACTA 58.466 33.333 0.00 0.00 0.00 2.24
2038 4196 7.162761 TGTCTTTATTCAATTACCTGACCGAA 58.837 34.615 0.00 0.00 0.00 4.30
2111 4269 8.700644 CAGTGTTTGCTTTAGTAGTACTACTTG 58.299 37.037 34.30 25.06 43.35 3.16
2145 4303 9.740239 GCATGAGACATATTGTTACATGAAAAT 57.260 29.630 20.87 0.00 41.68 1.82
2146 4304 8.738106 TGCATGAGACATATTGTTACATGAAAA 58.262 29.630 20.87 0.00 41.68 2.29
2249 5938 3.189287 GCCACTACTTGATGGACAAACTG 59.811 47.826 0.00 0.00 38.34 3.16
2349 6038 3.380479 TGTGTACTCCCTCTGTTTTCG 57.620 47.619 0.00 0.00 0.00 3.46
2368 6057 7.965655 TGGCTATTTGTTTTACATCACGTAATG 59.034 33.333 0.00 0.00 39.81 1.90
2438 6129 5.523916 TCAGTCACAGAGAAAACTACAAAGC 59.476 40.000 0.00 0.00 0.00 3.51
2439 6130 6.535150 TGTCAGTCACAGAGAAAACTACAAAG 59.465 38.462 0.00 0.00 0.00 2.77
2843 6534 5.120674 TGAGATGCAAACATAAGTTGTCTCG 59.879 40.000 0.00 0.00 37.68 4.04
2892 6586 3.131396 CAAGGCGGCTATAGTAACTTGG 58.869 50.000 13.71 0.00 32.47 3.61
2901 6595 2.076207 TAGGTCACAAGGCGGCTATA 57.924 50.000 13.71 0.00 0.00 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.