Multiple sequence alignment - TraesCS2D01G344900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G344900 chr2D 100.000 5312 0 0 1 5312 440785166 440779855 0.000000e+00 9810.0
1 TraesCS2D01G344900 chr2D 85.457 2111 202 43 957 3031 440969015 440966974 0.000000e+00 2100.0
2 TraesCS2D01G344900 chr2D 83.377 385 35 15 3797 4164 440966672 440966300 3.970000e-86 329.0
3 TraesCS2D01G344900 chr2D 77.475 404 52 23 4869 5250 48606397 48606011 6.970000e-49 206.0
4 TraesCS2D01G344900 chr2D 79.649 285 34 17 3490 3771 110625940 110625677 3.270000e-42 183.0
5 TraesCS2D01G344900 chr2A 93.817 2879 112 24 896 3748 584523303 584520465 0.000000e+00 4270.0
6 TraesCS2D01G344900 chr2A 85.448 2096 201 43 957 3031 584579325 584577313 0.000000e+00 2085.0
7 TraesCS2D01G344900 chr2A 87.346 972 53 17 3 962 584524247 584523334 0.000000e+00 1050.0
8 TraesCS2D01G344900 chr2A 92.846 657 25 6 3798 4448 584520461 584519821 0.000000e+00 933.0
9 TraesCS2D01G344900 chr2A 90.152 264 21 3 3122 3381 584577267 584577005 6.590000e-89 339.0
10 TraesCS2D01G344900 chr2A 89.583 192 11 3 3797 3988 584577014 584576832 8.890000e-58 235.0
11 TraesCS2D01G344900 chr2A 92.126 127 7 1 4742 4868 584519692 584519569 5.470000e-40 176.0
12 TraesCS2D01G344900 chr2A 92.857 112 7 1 4756 4866 584576340 584576229 1.530000e-35 161.0
13 TraesCS2D01G344900 chr2A 91.753 97 8 0 4633 4729 584519774 584519678 9.280000e-28 135.0
14 TraesCS2D01G344900 chr2B 92.732 2628 132 28 44 2660 518754751 518752172 0.000000e+00 3740.0
15 TraesCS2D01G344900 chr2B 86.822 1328 107 34 957 2273 518760232 518758962 0.000000e+00 1421.0
16 TraesCS2D01G344900 chr2B 95.590 771 29 3 2653 3419 518752096 518751327 0.000000e+00 1230.0
17 TraesCS2D01G344900 chr2B 90.962 852 55 14 4023 4867 518751324 518750488 0.000000e+00 1127.0
18 TraesCS2D01G344900 chr2B 89.394 264 21 4 3122 3381 518758072 518757812 5.130000e-85 326.0
19 TraesCS2D01G344900 chr2B 82.500 360 33 14 3826 4168 518757799 518757453 6.730000e-74 289.0
20 TraesCS2D01G344900 chr2B 94.595 74 4 0 3593 3666 707717111 707717038 1.210000e-21 115.0
21 TraesCS2D01G344900 chrUn 86.452 310 28 8 3490 3797 39274526 39274229 1.430000e-85 327.0
22 TraesCS2D01G344900 chrUn 77.295 414 61 18 4868 5257 150140875 150141279 4.170000e-51 213.0
23 TraesCS2D01G344900 chrUn 77.349 415 59 20 4868 5257 172387242 172386838 4.170000e-51 213.0
24 TraesCS2D01G344900 chrUn 77.295 414 61 18 4868 5257 321413573 321413977 4.170000e-51 213.0
25 TraesCS2D01G344900 chr7B 85.409 281 28 8 3491 3768 678897907 678897637 4.050000e-71 279.0
26 TraesCS2D01G344900 chr7B 79.221 308 47 10 4873 5175 186822874 186823169 1.170000e-46 198.0
27 TraesCS2D01G344900 chr7B 75.744 437 69 18 3383 3797 136880286 136879865 9.080000e-43 185.0
28 TraesCS2D01G344900 chr7B 78.289 304 53 9 3490 3790 231420286 231419993 3.270000e-42 183.0
29 TraesCS2D01G344900 chr7D 86.220 254 26 5 3540 3792 92444620 92444865 3.150000e-67 267.0
30 TraesCS2D01G344900 chr7D 79.538 303 51 8 3490 3790 254189840 254189547 6.970000e-49 206.0
31 TraesCS2D01G344900 chr7D 78.107 169 20 9 5094 5248 466048457 466048622 2.040000e-14 91.6
32 TraesCS2D01G344900 chr3A 79.494 395 55 16 4869 5249 572569983 572569601 1.900000e-64 257.0
33 TraesCS2D01G344900 chr1A 78.345 411 57 20 4868 5260 524283617 524283221 2.470000e-58 237.0
34 TraesCS2D01G344900 chr1D 77.129 411 65 19 4868 5257 474234178 474233776 1.500000e-50 211.0
35 TraesCS2D01G344900 chr4D 77.929 367 57 16 4886 5239 491955521 491955876 1.940000e-49 207.0
36 TraesCS2D01G344900 chr3D 77.073 410 61 17 4868 5257 582850606 582850210 6.970000e-49 206.0
37 TraesCS2D01G344900 chr4B 76.456 395 57 16 4868 5257 44470760 44470397 1.180000e-41 182.0
38 TraesCS2D01G344900 chr4B 75.443 395 61 16 4868 5257 44659996 44659633 5.510000e-35 159.0
39 TraesCS2D01G344900 chr5D 79.923 259 28 12 3383 3619 384688709 384688453 9.150000e-38 169.0
40 TraesCS2D01G344900 chr6D 76.803 319 43 16 4942 5243 10811609 10811913 3.310000e-32 150.0
41 TraesCS2D01G344900 chr5B 100.000 33 0 0 295 327 585041601 585041633 1.600000e-05 62.1
42 TraesCS2D01G344900 chr6B 100.000 32 0 0 296 327 413888366 413888397 5.750000e-05 60.2
43 TraesCS2D01G344900 chr6A 100.000 32 0 0 296 327 377542401 377542432 5.750000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G344900 chr2D 440779855 440785166 5311 True 9810.0 9810 100.000000 1 5312 1 chr2D.!!$R3 5311
1 TraesCS2D01G344900 chr2D 440966300 440969015 2715 True 1214.5 2100 84.417000 957 4164 2 chr2D.!!$R4 3207
2 TraesCS2D01G344900 chr2A 584519569 584524247 4678 True 1312.8 4270 91.577600 3 4868 5 chr2A.!!$R1 4865
3 TraesCS2D01G344900 chr2A 584576229 584579325 3096 True 705.0 2085 89.510000 957 4866 4 chr2A.!!$R2 3909
4 TraesCS2D01G344900 chr2B 518750488 518760232 9744 True 1355.5 3740 89.666667 44 4867 6 chr2B.!!$R2 4823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 6317 0.109342 AAATGCCATAGGAGCTCCCG 59.891 55.000 29.54 17.5 40.87 5.14 F
1377 6939 0.103572 GCGATTTCCGTACTAGGGCA 59.896 55.000 0.00 0.0 41.15 5.36 F
2176 7746 0.383949 TTTGTCCTGAAAACAGCGGC 59.616 50.000 0.00 0.0 0.00 6.53 F
3744 9447 1.135315 CATTTCTGGATGTGCAACCGG 60.135 52.381 0.00 0.0 34.36 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2592 8176 1.485480 AGCCTCTCATGACATCACCAG 59.515 52.381 0.0 0.0 0.00 4.00 R
3286 8969 1.502231 CACGCCTCATGCCATAGTAC 58.498 55.000 0.0 0.0 36.24 2.73 R
3777 9480 0.030369 CGAGGGCGTATCTGGTACAC 59.970 60.000 0.0 0.0 32.61 2.90 R
4872 10666 0.103208 CTCGGGAGCAGATACACCAC 59.897 60.000 0.0 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
233 5676 3.181483 CCAGATAAAAAGTGGCATGCTCC 60.181 47.826 18.92 8.35 0.00 4.70
248 5691 6.833416 TGGCATGCTCCTAGTAATAAAATTGT 59.167 34.615 18.92 0.00 0.00 2.71
296 5739 9.733556 TGCTGTTAGTAAAAGAAAATCCTATCA 57.266 29.630 4.11 0.00 0.00 2.15
303 5746 9.692325 AGTAAAAGAAAATCCTATCATGCTCTT 57.308 29.630 0.00 0.00 0.00 2.85
306 5749 9.692325 AAAAGAAAATCCTATCATGCTCTTAGT 57.308 29.630 0.00 0.00 0.00 2.24
328 5771 9.585099 TTAGTAATAAAAATGCCATGCTCTTTG 57.415 29.630 0.00 0.00 0.00 2.77
332 5775 4.339872 AAAATGCCATGCTCTTTGAACA 57.660 36.364 0.00 0.00 0.00 3.18
502 5947 6.719370 AGGGCATGTTCTCACTAACAAAATTA 59.281 34.615 0.00 0.00 42.33 1.40
576 6021 8.786898 GTGCCATGCTCTTTATAATAGAAATGA 58.213 33.333 13.99 0.00 0.00 2.57
794 6246 7.710676 AGTACATTGTAAATGCCATGGTTTA 57.289 32.000 14.67 8.48 0.00 2.01
845 6298 6.750039 CGAAATGCCACGGTTTCTATAAAAAT 59.250 34.615 0.00 0.00 33.32 1.82
861 6317 0.109342 AAATGCCATAGGAGCTCCCG 59.891 55.000 29.54 17.50 40.87 5.14
869 6325 3.578716 CCATAGGAGCTCCCGAGAAATTA 59.421 47.826 29.54 12.65 40.87 1.40
1030 6577 4.394712 GGTGCCGGTGTCTCCTGG 62.395 72.222 1.90 0.00 34.58 4.45
1032 6579 2.525629 TGCCGGTGTCTCCTGGAA 60.526 61.111 1.90 0.00 33.75 3.53
1037 6584 1.889530 CGGTGTCTCCTGGAACCCTC 61.890 65.000 9.85 0.00 0.00 4.30
1040 6587 0.193574 TGTCTCCTGGAACCCTCCTT 59.806 55.000 0.00 0.00 42.94 3.36
1041 6588 1.363246 GTCTCCTGGAACCCTCCTTT 58.637 55.000 0.00 0.00 42.94 3.11
1377 6939 0.103572 GCGATTTCCGTACTAGGGCA 59.896 55.000 0.00 0.00 41.15 5.36
1387 6949 2.288457 CGTACTAGGGCATGGACTGATG 60.288 54.545 0.00 0.00 0.00 3.07
1625 7187 0.678395 CGCTCTACATCCATGCCTCT 59.322 55.000 0.00 0.00 0.00 3.69
1626 7188 1.069823 CGCTCTACATCCATGCCTCTT 59.930 52.381 0.00 0.00 0.00 2.85
1820 7382 4.080863 ACACTGTGAAAGAAACTCAGGTCT 60.081 41.667 15.86 0.00 34.51 3.85
1866 7431 6.222038 TCACTGTAACTGACCTGATATTCC 57.778 41.667 0.00 0.00 0.00 3.01
2006 7571 7.547370 GCATACCTTCATGTAGATATTCCAGAC 59.453 40.741 0.12 0.00 0.00 3.51
2096 7665 4.715534 TTCACCAAACTAATGTCCCTCA 57.284 40.909 0.00 0.00 0.00 3.86
2154 7723 6.003950 CCATAACCTGGTTTACATAGATGGG 58.996 44.000 18.58 4.34 40.49 4.00
2176 7746 0.383949 TTTGTCCTGAAAACAGCGGC 59.616 50.000 0.00 0.00 0.00 6.53
2210 7784 2.435693 GCCACATAGAGGCCGAGGT 61.436 63.158 0.00 0.00 46.50 3.85
2303 7884 4.948621 GTCCTACTTGCAGAACTACTAGGA 59.051 45.833 0.00 0.00 0.00 2.94
2395 7979 3.406764 GATGAATATCCTGGCCAGTGTC 58.593 50.000 30.63 18.86 0.00 3.67
2408 7992 2.570169 CCAGTGTCGTGTTAATTTGCG 58.430 47.619 0.00 0.00 0.00 4.85
2607 8191 6.820152 TGAAAGTAATCTGGTGATGTCATGAG 59.180 38.462 0.00 0.00 32.44 2.90
2845 8511 7.852945 GTGCATATTTTCTACAGTGATACTTGC 59.147 37.037 0.00 0.00 0.00 4.01
2852 8518 7.462571 TTCTACAGTGATACTTGCTCTGTTA 57.537 36.000 0.00 0.00 39.77 2.41
2867 8533 7.661536 TGCTCTGTTAGGTAATGTTAGAGAT 57.338 36.000 0.00 0.00 33.76 2.75
3006 8678 6.070710 TGGTTTAAGTGTTGCTTACCCTTTTT 60.071 34.615 0.00 0.00 39.22 1.94
3038 8710 3.570125 TGGTTGAACGATTTGCATTGGTA 59.430 39.130 0.00 0.00 0.00 3.25
3286 8969 2.620251 TCACGGATCCAATAGCAAGG 57.380 50.000 13.41 0.00 0.00 3.61
3319 9002 1.593209 GCGTGGACAGGTCGTGAAA 60.593 57.895 0.00 0.00 0.00 2.69
3411 9094 3.370231 GTGCGCCGGGGAAATTGT 61.370 61.111 24.68 0.00 0.00 2.71
3419 9102 1.540267 CGGGGAAATTGTTGCTACCA 58.460 50.000 0.00 0.00 0.00 3.25
3422 9105 3.692690 GGGGAAATTGTTGCTACCAGTA 58.307 45.455 0.00 0.00 0.00 2.74
3435 9118 2.431942 CAGTACACCGGACACCGC 60.432 66.667 9.46 0.00 46.86 5.68
3443 9126 3.049674 CGGACACCGCTTGCACAT 61.050 61.111 0.00 0.00 41.17 3.21
3452 9135 2.288152 ACCGCTTGCACATCGAAAAATT 60.288 40.909 0.00 0.00 0.00 1.82
3453 9136 2.342354 CCGCTTGCACATCGAAAAATTC 59.658 45.455 0.00 0.00 0.00 2.17
3457 9157 5.556006 CGCTTGCACATCGAAAAATTCAAAA 60.556 36.000 0.00 0.00 0.00 2.44
3526 9226 8.726068 TCAAAATTCGAAACATTGCACTAGATA 58.274 29.630 0.00 0.00 0.00 1.98
3565 9265 2.945008 ACATCAGTGTGATAATTGGCCG 59.055 45.455 0.00 0.00 34.28 6.13
3579 9279 1.378514 GGCCGAATCTGAAGCCCAA 60.379 57.895 0.00 0.00 39.60 4.12
3670 9372 8.672214 TGATATGAAATTTTGTGACAACATCG 57.328 30.769 0.00 0.00 35.83 3.84
3671 9373 7.754475 TGATATGAAATTTTGTGACAACATCGG 59.246 33.333 0.00 0.00 35.83 4.18
3672 9374 5.255710 TGAAATTTTGTGACAACATCGGT 57.744 34.783 0.00 0.00 35.83 4.69
3673 9375 5.277825 TGAAATTTTGTGACAACATCGGTC 58.722 37.500 0.00 0.00 35.83 4.79
3674 9376 4.909696 AATTTTGTGACAACATCGGTCA 57.090 36.364 0.00 0.00 42.62 4.02
3675 9377 5.452078 AATTTTGTGACAACATCGGTCAT 57.548 34.783 0.00 0.00 46.01 3.06
3676 9378 4.481930 TTTTGTGACAACATCGGTCATC 57.518 40.909 0.00 0.00 46.01 2.92
3701 9403 4.002982 ACGATGTTGTGTCAATGCACTAT 58.997 39.130 0.00 2.67 39.89 2.12
3742 9445 3.005684 TGAACATTTCTGGATGTGCAACC 59.994 43.478 0.00 0.00 41.50 3.77
3744 9447 1.135315 CATTTCTGGATGTGCAACCGG 60.135 52.381 0.00 0.00 34.36 5.28
3748 9451 2.750237 GGATGTGCAACCGGGGTC 60.750 66.667 6.32 0.00 34.36 4.46
3749 9452 2.750237 GATGTGCAACCGGGGTCC 60.750 66.667 6.32 0.00 34.36 4.46
3769 9472 3.238497 TGCACCGGTAGCACCAGT 61.238 61.111 22.47 0.00 38.47 4.00
3770 9473 2.032071 GCACCGGTAGCACCAGTT 59.968 61.111 19.85 0.00 38.47 3.16
3771 9474 2.325082 GCACCGGTAGCACCAGTTG 61.325 63.158 19.85 1.06 38.47 3.16
3783 9486 4.397348 CAGTTGCCCTGGTGTACC 57.603 61.111 0.00 0.00 37.54 3.34
3784 9487 1.454104 CAGTTGCCCTGGTGTACCA 59.546 57.895 3.37 3.37 45.30 3.25
3796 9499 0.030369 GTGTACCAGATACGCCCTCG 59.970 60.000 0.00 0.00 38.20 4.63
3902 9616 5.064707 CACTTGTTTTCTCGAGGAACAGAAA 59.935 40.000 24.21 15.09 36.94 2.52
3903 9617 5.823045 ACTTGTTTTCTCGAGGAACAGAAAT 59.177 36.000 24.21 14.34 38.21 2.17
3982 9697 6.122964 TGACTCTGTTAGCTAGCATCTAGAA 58.877 40.000 18.83 0.00 0.00 2.10
4206 9936 1.207089 TGAAGTAGGGTGAGAATGGCG 59.793 52.381 0.00 0.00 0.00 5.69
4212 9942 2.746277 GTGAGAATGGCGGCGGTT 60.746 61.111 9.78 1.12 0.00 4.44
4229 9959 1.594331 GTTTGGTGAACCTCGAGCTT 58.406 50.000 6.99 0.00 36.82 3.74
4291 10021 8.754080 TGATCAACCTCAACTTTTTCCTTTTTA 58.246 29.630 0.00 0.00 0.00 1.52
4416 10149 6.824196 TGCCGTATTATATCTGTTTGGTTTGA 59.176 34.615 0.00 0.00 0.00 2.69
4444 10182 1.021968 GTCACTTGTGACCAACCACC 58.978 55.000 19.77 0.00 36.26 4.61
4448 10186 3.117851 TCACTTGTGACCAACCACCAATA 60.118 43.478 0.00 0.00 36.26 1.90
4450 10188 4.280677 CACTTGTGACCAACCACCAATAAT 59.719 41.667 0.00 0.00 36.26 1.28
4468 10206 9.927081 ACCAATAATCAGGTTAGAAGAATGATT 57.073 29.630 4.38 4.38 41.91 2.57
4476 10214 6.481644 CAGGTTAGAAGAATGATTGCTACTCC 59.518 42.308 0.00 0.00 0.00 3.85
4667 10434 0.108329 ATGCGGACAAGGGTACTTCG 60.108 55.000 0.00 0.00 33.81 3.79
4693 10460 5.601583 ATTTATGAGCCACAATGCAATGA 57.398 34.783 9.20 0.00 0.00 2.57
4716 10483 2.125310 CACGCGGTGGAGGCATTA 60.125 61.111 12.47 0.00 0.00 1.90
4717 10484 1.743623 CACGCGGTGGAGGCATTAA 60.744 57.895 12.47 0.00 0.00 1.40
4718 10485 1.003112 ACGCGGTGGAGGCATTAAA 60.003 52.632 12.47 0.00 0.00 1.52
4719 10486 0.606944 ACGCGGTGGAGGCATTAAAA 60.607 50.000 12.47 0.00 0.00 1.52
4720 10487 0.738389 CGCGGTGGAGGCATTAAAAT 59.262 50.000 0.00 0.00 0.00 1.82
4721 10488 1.944024 CGCGGTGGAGGCATTAAAATA 59.056 47.619 0.00 0.00 0.00 1.40
4722 10489 2.356382 CGCGGTGGAGGCATTAAAATAA 59.644 45.455 0.00 0.00 0.00 1.40
4723 10490 3.004315 CGCGGTGGAGGCATTAAAATAAT 59.996 43.478 0.00 0.00 0.00 1.28
4724 10491 4.499019 CGCGGTGGAGGCATTAAAATAATT 60.499 41.667 0.00 0.00 0.00 1.40
4725 10492 5.278071 CGCGGTGGAGGCATTAAAATAATTA 60.278 40.000 0.00 0.00 0.00 1.40
4726 10493 6.569610 CGCGGTGGAGGCATTAAAATAATTAT 60.570 38.462 0.00 0.00 0.00 1.28
4727 10494 6.806739 GCGGTGGAGGCATTAAAATAATTATC 59.193 38.462 0.00 0.00 0.00 1.75
4728 10495 7.309194 GCGGTGGAGGCATTAAAATAATTATCT 60.309 37.037 0.00 0.00 0.00 1.98
4729 10496 8.576442 CGGTGGAGGCATTAAAATAATTATCTT 58.424 33.333 0.00 0.00 0.00 2.40
4840 10633 4.843728 TCTCCAACAACTTTTGAGTCACT 58.156 39.130 0.00 0.00 0.00 3.41
4868 10662 0.657368 GTTGAGAAACAAGTGGCGCG 60.657 55.000 0.00 0.00 39.30 6.86
4869 10663 1.781025 TTGAGAAACAAGTGGCGCGG 61.781 55.000 8.83 0.00 34.20 6.46
4870 10664 1.959226 GAGAAACAAGTGGCGCGGA 60.959 57.895 8.83 0.00 0.00 5.54
4871 10665 2.171489 GAGAAACAAGTGGCGCGGAC 62.171 60.000 8.83 0.00 0.00 4.79
4872 10666 3.573489 GAAACAAGTGGCGCGGACG 62.573 63.158 8.83 0.00 44.07 4.79
4873 10667 4.903010 AACAAGTGGCGCGGACGT 62.903 61.111 8.83 0.00 42.83 4.34
4880 10674 4.807039 GGCGCGGACGTGGTGTAT 62.807 66.667 8.83 0.00 42.83 2.29
4881 10675 3.252484 GCGCGGACGTGGTGTATC 61.252 66.667 8.83 0.00 42.83 2.24
4882 10676 2.488355 CGCGGACGTGGTGTATCT 59.512 61.111 0.00 0.00 33.53 1.98
4883 10677 1.872234 CGCGGACGTGGTGTATCTG 60.872 63.158 0.00 0.00 33.53 2.90
4884 10678 2.165301 GCGGACGTGGTGTATCTGC 61.165 63.158 0.00 0.00 37.56 4.26
4885 10679 1.511305 CGGACGTGGTGTATCTGCT 59.489 57.895 0.00 0.00 0.00 4.24
4886 10680 0.525668 CGGACGTGGTGTATCTGCTC 60.526 60.000 0.00 0.00 0.00 4.26
4887 10681 0.179108 GGACGTGGTGTATCTGCTCC 60.179 60.000 0.00 0.00 0.00 4.70
4888 10682 0.179108 GACGTGGTGTATCTGCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
4889 10683 1.226974 CGTGGTGTATCTGCTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
4890 10684 1.663379 CGTGGTGTATCTGCTCCCGA 61.663 60.000 0.00 0.00 0.00 5.14
4891 10685 0.103208 GTGGTGTATCTGCTCCCGAG 59.897 60.000 0.00 0.00 0.00 4.63
4901 10695 3.819188 CTCCCGAGCTCAAATGCC 58.181 61.111 15.40 0.00 0.00 4.40
4902 10696 1.222936 CTCCCGAGCTCAAATGCCT 59.777 57.895 15.40 0.00 0.00 4.75
4903 10697 0.813210 CTCCCGAGCTCAAATGCCTC 60.813 60.000 15.40 0.00 0.00 4.70
4904 10698 1.821332 CCCGAGCTCAAATGCCTCC 60.821 63.158 15.40 0.00 0.00 4.30
4905 10699 1.222936 CCGAGCTCAAATGCCTCCT 59.777 57.895 15.40 0.00 0.00 3.69
4906 10700 0.465705 CCGAGCTCAAATGCCTCCTA 59.534 55.000 15.40 0.00 0.00 2.94
4907 10701 1.576356 CGAGCTCAAATGCCTCCTAC 58.424 55.000 15.40 0.00 0.00 3.18
4908 10702 1.137872 CGAGCTCAAATGCCTCCTACT 59.862 52.381 15.40 0.00 0.00 2.57
4909 10703 2.559440 GAGCTCAAATGCCTCCTACTG 58.441 52.381 9.40 0.00 0.00 2.74
4910 10704 2.169352 GAGCTCAAATGCCTCCTACTGA 59.831 50.000 9.40 0.00 0.00 3.41
4911 10705 2.573462 AGCTCAAATGCCTCCTACTGAA 59.427 45.455 0.00 0.00 0.00 3.02
4912 10706 2.680339 GCTCAAATGCCTCCTACTGAAC 59.320 50.000 0.00 0.00 0.00 3.18
4913 10707 3.869912 GCTCAAATGCCTCCTACTGAACA 60.870 47.826 0.00 0.00 0.00 3.18
4914 10708 4.521146 CTCAAATGCCTCCTACTGAACAT 58.479 43.478 0.00 0.00 0.00 2.71
4915 10709 4.922206 TCAAATGCCTCCTACTGAACATT 58.078 39.130 0.00 0.00 33.46 2.71
4916 10710 6.061022 TCAAATGCCTCCTACTGAACATTA 57.939 37.500 0.00 0.00 32.38 1.90
4917 10711 5.880332 TCAAATGCCTCCTACTGAACATTAC 59.120 40.000 0.00 0.00 32.38 1.89
4918 10712 5.435686 AATGCCTCCTACTGAACATTACA 57.564 39.130 0.00 0.00 31.43 2.41
4919 10713 4.901197 TGCCTCCTACTGAACATTACAA 57.099 40.909 0.00 0.00 0.00 2.41
4920 10714 5.435686 TGCCTCCTACTGAACATTACAAT 57.564 39.130 0.00 0.00 0.00 2.71
4921 10715 6.553953 TGCCTCCTACTGAACATTACAATA 57.446 37.500 0.00 0.00 0.00 1.90
4922 10716 6.953101 TGCCTCCTACTGAACATTACAATAA 58.047 36.000 0.00 0.00 0.00 1.40
4923 10717 7.398829 TGCCTCCTACTGAACATTACAATAAA 58.601 34.615 0.00 0.00 0.00 1.40
4924 10718 7.885922 TGCCTCCTACTGAACATTACAATAAAA 59.114 33.333 0.00 0.00 0.00 1.52
4925 10719 8.736244 GCCTCCTACTGAACATTACAATAAAAA 58.264 33.333 0.00 0.00 0.00 1.94
5000 10794 7.551035 TTTTGTATGCTTGCAAAATTTCAGT 57.449 28.000 19.76 0.00 40.87 3.41
5001 10795 8.654230 TTTTGTATGCTTGCAAAATTTCAGTA 57.346 26.923 19.76 1.49 40.87 2.74
5002 10796 8.654230 TTTGTATGCTTGCAAAATTTCAGTAA 57.346 26.923 12.37 0.00 34.97 2.24
5003 10797 7.872163 TGTATGCTTGCAAAATTTCAGTAAG 57.128 32.000 0.00 13.46 0.00 2.34
5004 10798 7.656412 TGTATGCTTGCAAAATTTCAGTAAGA 58.344 30.769 18.80 9.18 0.00 2.10
5005 10799 8.140628 TGTATGCTTGCAAAATTTCAGTAAGAA 58.859 29.630 18.80 12.41 0.00 2.52
5018 10812 6.480524 TTCAGTAAGAAATGACATTCGTGG 57.519 37.500 0.05 0.00 34.46 4.94
5019 10813 4.935205 TCAGTAAGAAATGACATTCGTGGG 59.065 41.667 0.05 0.00 34.46 4.61
5020 10814 4.935205 CAGTAAGAAATGACATTCGTGGGA 59.065 41.667 0.05 0.00 34.46 4.37
5021 10815 5.063944 CAGTAAGAAATGACATTCGTGGGAG 59.936 44.000 0.05 0.00 34.46 4.30
5022 10816 3.703001 AGAAATGACATTCGTGGGAGT 57.297 42.857 0.05 0.00 34.46 3.85
5023 10817 3.600388 AGAAATGACATTCGTGGGAGTC 58.400 45.455 0.05 0.00 34.46 3.36
5024 10818 3.007940 AGAAATGACATTCGTGGGAGTCA 59.992 43.478 0.05 0.00 44.16 3.41
5026 10820 2.385013 TGACATTCGTGGGAGTCATG 57.615 50.000 0.00 0.00 36.20 3.07
5027 10821 1.623311 TGACATTCGTGGGAGTCATGT 59.377 47.619 0.00 0.00 36.20 3.21
5028 10822 2.271800 GACATTCGTGGGAGTCATGTC 58.728 52.381 3.96 3.96 34.14 3.06
5029 10823 1.623311 ACATTCGTGGGAGTCATGTCA 59.377 47.619 0.00 0.00 34.14 3.58
5030 10824 2.038426 ACATTCGTGGGAGTCATGTCAA 59.962 45.455 0.00 0.00 34.14 3.18
5031 10825 2.920724 TTCGTGGGAGTCATGTCAAA 57.079 45.000 0.00 0.00 34.14 2.69
5032 10826 2.920724 TCGTGGGAGTCATGTCAAAA 57.079 45.000 0.00 0.00 34.14 2.44
5033 10827 3.201353 TCGTGGGAGTCATGTCAAAAA 57.799 42.857 0.00 0.00 34.14 1.94
5056 10850 6.375945 AAAACAAAACAAAATCCATGCTCC 57.624 33.333 0.00 0.00 0.00 4.70
5057 10851 4.686191 ACAAAACAAAATCCATGCTCCA 57.314 36.364 0.00 0.00 0.00 3.86
5058 10852 5.033589 ACAAAACAAAATCCATGCTCCAA 57.966 34.783 0.00 0.00 0.00 3.53
5059 10853 5.435291 ACAAAACAAAATCCATGCTCCAAA 58.565 33.333 0.00 0.00 0.00 3.28
5060 10854 5.884792 ACAAAACAAAATCCATGCTCCAAAA 59.115 32.000 0.00 0.00 0.00 2.44
5061 10855 6.546772 ACAAAACAAAATCCATGCTCCAAAAT 59.453 30.769 0.00 0.00 0.00 1.82
5062 10856 7.068470 ACAAAACAAAATCCATGCTCCAAAATT 59.932 29.630 0.00 0.00 0.00 1.82
5063 10857 6.563222 AACAAAATCCATGCTCCAAAATTG 57.437 33.333 0.00 0.00 0.00 2.32
5064 10858 4.456566 ACAAAATCCATGCTCCAAAATTGC 59.543 37.500 0.00 0.00 0.00 3.56
5065 10859 4.563140 AAATCCATGCTCCAAAATTGCT 57.437 36.364 0.00 0.00 0.00 3.91
5066 10860 5.680594 AAATCCATGCTCCAAAATTGCTA 57.319 34.783 0.00 0.00 0.00 3.49
5067 10861 4.931661 ATCCATGCTCCAAAATTGCTAG 57.068 40.909 0.00 0.00 0.00 3.42
5068 10862 3.700538 TCCATGCTCCAAAATTGCTAGT 58.299 40.909 0.00 0.00 0.00 2.57
5069 10863 4.088634 TCCATGCTCCAAAATTGCTAGTT 58.911 39.130 0.00 0.00 0.00 2.24
5070 10864 4.527816 TCCATGCTCCAAAATTGCTAGTTT 59.472 37.500 0.00 0.00 0.00 2.66
5071 10865 5.011943 TCCATGCTCCAAAATTGCTAGTTTT 59.988 36.000 0.00 0.00 0.00 2.43
5072 10866 5.121142 CCATGCTCCAAAATTGCTAGTTTTG 59.879 40.000 9.13 9.13 43.00 2.44
5073 10867 5.528043 TGCTCCAAAATTGCTAGTTTTGA 57.472 34.783 15.15 8.39 45.02 2.69
5074 10868 5.911752 TGCTCCAAAATTGCTAGTTTTGAA 58.088 33.333 15.15 0.00 45.02 2.69
5075 10869 6.344500 TGCTCCAAAATTGCTAGTTTTGAAA 58.656 32.000 15.15 5.71 45.02 2.69
5076 10870 6.820656 TGCTCCAAAATTGCTAGTTTTGAAAA 59.179 30.769 15.15 0.00 45.02 2.29
5077 10871 7.125755 GCTCCAAAATTGCTAGTTTTGAAAAC 58.874 34.615 12.62 12.62 45.02 2.43
5078 10872 7.201600 GCTCCAAAATTGCTAGTTTTGAAAACA 60.202 33.333 21.34 7.88 45.02 2.83
5079 10873 8.729805 TCCAAAATTGCTAGTTTTGAAAACAT 57.270 26.923 21.34 9.97 45.02 2.71
5080 10874 9.171877 TCCAAAATTGCTAGTTTTGAAAACATT 57.828 25.926 21.34 9.83 45.02 2.71
5081 10875 9.786105 CCAAAATTGCTAGTTTTGAAAACATTT 57.214 25.926 21.34 14.45 45.02 2.32
5084 10878 9.786105 AAATTGCTAGTTTTGAAAACATTTTGG 57.214 25.926 21.34 5.36 0.00 3.28
5085 10879 8.729805 ATTGCTAGTTTTGAAAACATTTTGGA 57.270 26.923 21.34 6.20 0.00 3.53
5086 10880 7.769272 TGCTAGTTTTGAAAACATTTTGGAG 57.231 32.000 21.34 8.47 0.00 3.86
5087 10881 7.327214 TGCTAGTTTTGAAAACATTTTGGAGT 58.673 30.769 21.34 1.71 0.00 3.85
5088 10882 7.277539 TGCTAGTTTTGAAAACATTTTGGAGTG 59.722 33.333 21.34 2.24 0.00 3.51
5089 10883 6.421377 AGTTTTGAAAACATTTTGGAGTGC 57.579 33.333 21.34 0.00 0.00 4.40
5090 10884 6.172630 AGTTTTGAAAACATTTTGGAGTGCT 58.827 32.000 21.34 0.00 0.00 4.40
5091 10885 6.092533 AGTTTTGAAAACATTTTGGAGTGCTG 59.907 34.615 21.34 0.00 0.00 4.41
5092 10886 4.998671 TGAAAACATTTTGGAGTGCTGA 57.001 36.364 0.00 0.00 0.00 4.26
5093 10887 5.534207 TGAAAACATTTTGGAGTGCTGAT 57.466 34.783 0.00 0.00 0.00 2.90
5094 10888 5.916318 TGAAAACATTTTGGAGTGCTGATT 58.084 33.333 0.00 0.00 0.00 2.57
5095 10889 6.347696 TGAAAACATTTTGGAGTGCTGATTT 58.652 32.000 0.00 0.00 0.00 2.17
5096 10890 6.822676 TGAAAACATTTTGGAGTGCTGATTTT 59.177 30.769 0.00 0.00 0.00 1.82
5097 10891 6.607735 AAACATTTTGGAGTGCTGATTTTG 57.392 33.333 0.00 0.00 0.00 2.44
5098 10892 5.280654 ACATTTTGGAGTGCTGATTTTGT 57.719 34.783 0.00 0.00 0.00 2.83
5099 10893 5.673514 ACATTTTGGAGTGCTGATTTTGTT 58.326 33.333 0.00 0.00 0.00 2.83
5100 10894 6.114767 ACATTTTGGAGTGCTGATTTTGTTT 58.885 32.000 0.00 0.00 0.00 2.83
5101 10895 6.598850 ACATTTTGGAGTGCTGATTTTGTTTT 59.401 30.769 0.00 0.00 0.00 2.43
5102 10896 7.121020 ACATTTTGGAGTGCTGATTTTGTTTTT 59.879 29.630 0.00 0.00 0.00 1.94
5120 10914 2.861462 TTTTGGCAACGACTTCCAAG 57.139 45.000 0.00 0.00 40.52 3.61
5121 10915 2.045561 TTTGGCAACGACTTCCAAGA 57.954 45.000 0.00 0.00 40.52 3.02
5122 10916 2.045561 TTGGCAACGACTTCCAAGAA 57.954 45.000 0.00 0.00 42.51 2.52
5123 10917 2.045561 TGGCAACGACTTCCAAGAAA 57.954 45.000 0.00 0.00 42.51 2.52
5124 10918 1.946768 TGGCAACGACTTCCAAGAAAG 59.053 47.619 0.00 0.00 42.51 2.62
5125 10919 1.947456 GGCAACGACTTCCAAGAAAGT 59.053 47.619 0.00 0.00 42.10 2.66
5134 10928 5.520376 ACTTCCAAGAAAGTCATTTGGTG 57.480 39.130 2.77 1.11 41.61 4.17
5135 10929 4.202151 ACTTCCAAGAAAGTCATTTGGTGC 60.202 41.667 2.77 0.00 41.61 5.01
5136 10930 3.565307 TCCAAGAAAGTCATTTGGTGCT 58.435 40.909 2.77 0.00 41.61 4.40
5137 10931 3.318839 TCCAAGAAAGTCATTTGGTGCTG 59.681 43.478 2.77 0.00 41.61 4.41
5138 10932 3.318839 CCAAGAAAGTCATTTGGTGCTGA 59.681 43.478 0.00 0.00 37.24 4.26
5139 10933 4.202141 CCAAGAAAGTCATTTGGTGCTGAA 60.202 41.667 0.00 0.00 37.24 3.02
5140 10934 5.350633 CAAGAAAGTCATTTGGTGCTGAAA 58.649 37.500 0.00 0.00 0.00 2.69
5141 10935 5.796424 AGAAAGTCATTTGGTGCTGAAAT 57.204 34.783 0.00 0.00 0.00 2.17
5142 10936 6.165700 AGAAAGTCATTTGGTGCTGAAATT 57.834 33.333 0.00 0.00 0.00 1.82
5143 10937 6.585416 AGAAAGTCATTTGGTGCTGAAATTT 58.415 32.000 0.00 0.00 0.00 1.82
5144 10938 6.480981 AGAAAGTCATTTGGTGCTGAAATTTG 59.519 34.615 0.00 0.00 0.00 2.32
5145 10939 4.634199 AGTCATTTGGTGCTGAAATTTGG 58.366 39.130 0.00 0.00 0.00 3.28
5146 10940 4.101430 AGTCATTTGGTGCTGAAATTTGGT 59.899 37.500 0.00 0.00 0.00 3.67
5147 10941 5.304101 AGTCATTTGGTGCTGAAATTTGGTA 59.696 36.000 0.00 0.00 0.00 3.25
5148 10942 6.014327 AGTCATTTGGTGCTGAAATTTGGTAT 60.014 34.615 0.00 0.00 0.00 2.73
5149 10943 6.091169 GTCATTTGGTGCTGAAATTTGGTATG 59.909 38.462 0.00 0.00 0.00 2.39
5150 10944 3.591196 TGGTGCTGAAATTTGGTATGC 57.409 42.857 0.00 0.00 0.00 3.14
5151 10945 2.896044 TGGTGCTGAAATTTGGTATGCA 59.104 40.909 0.00 0.00 0.00 3.96
5152 10946 3.514706 TGGTGCTGAAATTTGGTATGCAT 59.485 39.130 3.79 3.79 0.00 3.96
5153 10947 4.708909 TGGTGCTGAAATTTGGTATGCATA 59.291 37.500 1.16 1.16 0.00 3.14
5154 10948 5.043248 GGTGCTGAAATTTGGTATGCATAC 58.957 41.667 25.74 25.74 0.00 2.39
5155 10949 5.394005 GGTGCTGAAATTTGGTATGCATACA 60.394 40.000 32.19 18.65 34.98 2.29
5156 10950 6.098679 GTGCTGAAATTTGGTATGCATACAA 58.901 36.000 32.19 22.74 34.98 2.41
5157 10951 6.589523 GTGCTGAAATTTGGTATGCATACAAA 59.410 34.615 32.19 26.73 34.98 2.83
5158 10952 7.117523 GTGCTGAAATTTGGTATGCATACAAAA 59.882 33.333 31.84 31.84 39.68 2.44
5159 10953 7.823310 TGCTGAAATTTGGTATGCATACAAAAT 59.177 29.630 32.92 32.92 44.64 1.82
5160 10954 9.311916 GCTGAAATTTGGTATGCATACAAAATA 57.688 29.630 36.02 25.56 42.92 1.40
5228 11022 6.942532 TGATTTTACTATTCATCAGGGTGC 57.057 37.500 0.00 0.00 0.00 5.01
5229 11023 6.422333 TGATTTTACTATTCATCAGGGTGCA 58.578 36.000 0.00 0.00 0.00 4.57
5230 11024 7.062322 TGATTTTACTATTCATCAGGGTGCAT 58.938 34.615 0.00 0.00 0.00 3.96
5231 11025 7.560991 TGATTTTACTATTCATCAGGGTGCATT 59.439 33.333 0.00 0.00 0.00 3.56
5232 11026 7.716799 TTTTACTATTCATCAGGGTGCATTT 57.283 32.000 0.00 0.00 0.00 2.32
5233 11027 6.698008 TTACTATTCATCAGGGTGCATTTG 57.302 37.500 0.00 0.00 0.00 2.32
5234 11028 4.858850 ACTATTCATCAGGGTGCATTTGA 58.141 39.130 0.00 0.00 0.00 2.69
5235 11029 4.885907 ACTATTCATCAGGGTGCATTTGAG 59.114 41.667 0.00 0.00 0.00 3.02
5236 11030 1.466856 TCATCAGGGTGCATTTGAGC 58.533 50.000 0.00 0.00 0.00 4.26
5237 11031 1.005097 TCATCAGGGTGCATTTGAGCT 59.995 47.619 0.00 0.00 34.99 4.09
5238 11032 1.404391 CATCAGGGTGCATTTGAGCTC 59.596 52.381 6.82 6.82 34.99 4.09
5239 11033 0.401356 TCAGGGTGCATTTGAGCTCA 59.599 50.000 13.74 13.74 34.99 4.26
5240 11034 0.809385 CAGGGTGCATTTGAGCTCAG 59.191 55.000 17.43 6.81 34.99 3.35
5241 11035 0.323178 AGGGTGCATTTGAGCTCAGG 60.323 55.000 17.43 11.70 34.99 3.86
5242 11036 0.322816 GGGTGCATTTGAGCTCAGGA 60.323 55.000 17.43 10.35 34.99 3.86
5243 11037 1.684248 GGGTGCATTTGAGCTCAGGAT 60.684 52.381 17.43 12.25 34.99 3.24
5244 11038 1.674962 GGTGCATTTGAGCTCAGGATC 59.325 52.381 17.43 3.33 34.99 3.36
5245 11039 2.362736 GTGCATTTGAGCTCAGGATCA 58.637 47.619 17.43 11.08 35.97 2.92
5246 11040 2.355132 GTGCATTTGAGCTCAGGATCAG 59.645 50.000 17.43 6.43 39.13 2.90
5247 11041 2.237893 TGCATTTGAGCTCAGGATCAGA 59.762 45.455 17.43 0.00 39.13 3.27
5248 11042 3.276857 GCATTTGAGCTCAGGATCAGAA 58.723 45.455 17.43 6.87 39.13 3.02
5249 11043 3.884091 GCATTTGAGCTCAGGATCAGAAT 59.116 43.478 17.43 9.02 39.13 2.40
5250 11044 5.061853 GCATTTGAGCTCAGGATCAGAATA 58.938 41.667 17.43 0.00 39.13 1.75
5251 11045 5.706369 GCATTTGAGCTCAGGATCAGAATAT 59.294 40.000 17.43 0.00 39.13 1.28
5252 11046 6.348622 GCATTTGAGCTCAGGATCAGAATATG 60.349 42.308 17.43 4.19 39.13 1.78
5253 11047 6.490241 TTTGAGCTCAGGATCAGAATATGA 57.510 37.500 17.43 0.00 43.70 2.15
5254 11048 5.465532 TGAGCTCAGGATCAGAATATGAC 57.534 43.478 13.74 0.00 41.91 3.06
5255 11049 5.146298 TGAGCTCAGGATCAGAATATGACT 58.854 41.667 13.74 0.00 41.91 3.41
5256 11050 5.601729 TGAGCTCAGGATCAGAATATGACTT 59.398 40.000 13.74 0.00 41.91 3.01
5257 11051 6.100404 AGCTCAGGATCAGAATATGACTTC 57.900 41.667 0.00 0.00 41.91 3.01
5258 11052 4.922692 GCTCAGGATCAGAATATGACTTCG 59.077 45.833 0.00 0.00 41.91 3.79
5259 11053 4.876125 TCAGGATCAGAATATGACTTCGC 58.124 43.478 0.00 0.00 41.91 4.70
5260 11054 4.342092 TCAGGATCAGAATATGACTTCGCA 59.658 41.667 0.00 0.00 41.91 5.10
5261 11055 4.685165 CAGGATCAGAATATGACTTCGCAG 59.315 45.833 0.00 0.00 41.91 5.18
5262 11056 4.343526 AGGATCAGAATATGACTTCGCAGT 59.656 41.667 0.00 0.00 41.91 4.40
5263 11057 4.447054 GGATCAGAATATGACTTCGCAGTG 59.553 45.833 0.00 0.00 41.91 3.66
5264 11058 3.785486 TCAGAATATGACTTCGCAGTGG 58.215 45.455 0.00 0.00 31.22 4.00
5265 11059 2.286294 CAGAATATGACTTCGCAGTGGC 59.714 50.000 0.00 0.00 31.22 5.01
5275 11069 2.980233 GCAGTGGCGCACCTTTCT 60.980 61.111 10.83 0.00 34.49 2.52
5276 11070 2.555547 GCAGTGGCGCACCTTTCTT 61.556 57.895 10.83 0.00 34.49 2.52
5277 11071 2.032981 CAGTGGCGCACCTTTCTTT 58.967 52.632 10.83 0.00 34.49 2.52
5278 11072 0.318107 CAGTGGCGCACCTTTCTTTG 60.318 55.000 10.83 0.00 34.49 2.77
5279 11073 0.465460 AGTGGCGCACCTTTCTTTGA 60.465 50.000 10.83 0.00 34.49 2.69
5280 11074 0.383949 GTGGCGCACCTTTCTTTGAA 59.616 50.000 10.83 0.00 36.63 2.69
5281 11075 0.667993 TGGCGCACCTTTCTTTGAAG 59.332 50.000 10.83 0.00 36.63 3.02
5282 11076 0.951558 GGCGCACCTTTCTTTGAAGA 59.048 50.000 10.83 0.00 0.00 2.87
5283 11077 1.068954 GGCGCACCTTTCTTTGAAGAG 60.069 52.381 10.83 0.00 36.22 2.85
5284 11078 1.873591 GCGCACCTTTCTTTGAAGAGA 59.126 47.619 0.30 0.00 36.22 3.10
5285 11079 2.290641 GCGCACCTTTCTTTGAAGAGAA 59.709 45.455 0.30 0.00 36.22 2.87
5286 11080 3.057946 GCGCACCTTTCTTTGAAGAGAAT 60.058 43.478 0.30 0.00 35.70 2.40
5287 11081 4.557496 GCGCACCTTTCTTTGAAGAGAATT 60.557 41.667 0.30 0.00 35.70 2.17
5288 11082 5.149977 CGCACCTTTCTTTGAAGAGAATTC 58.850 41.667 0.00 0.00 35.70 2.17
5289 11083 5.149977 GCACCTTTCTTTGAAGAGAATTCG 58.850 41.667 0.00 0.00 35.70 3.34
5290 11084 5.049405 GCACCTTTCTTTGAAGAGAATTCGA 60.049 40.000 0.00 0.00 35.70 3.71
5291 11085 6.366630 CACCTTTCTTTGAAGAGAATTCGAC 58.633 40.000 0.00 0.00 35.70 4.20
5292 11086 5.177696 ACCTTTCTTTGAAGAGAATTCGACG 59.822 40.000 0.00 0.00 35.70 5.12
5293 11087 5.405571 CCTTTCTTTGAAGAGAATTCGACGA 59.594 40.000 0.00 0.00 35.70 4.20
5294 11088 6.073765 CCTTTCTTTGAAGAGAATTCGACGAA 60.074 38.462 13.48 13.48 35.70 3.85
5295 11089 6.838198 TTCTTTGAAGAGAATTCGACGAAA 57.162 33.333 15.22 0.00 36.22 3.46
5296 11090 7.421530 TTCTTTGAAGAGAATTCGACGAAAT 57.578 32.000 15.22 6.04 36.22 2.17
5297 11091 6.821482 TCTTTGAAGAGAATTCGACGAAATG 58.179 36.000 15.22 0.00 0.00 2.32
5298 11092 5.530519 TTGAAGAGAATTCGACGAAATGG 57.469 39.130 15.22 0.00 0.00 3.16
5299 11093 3.370978 TGAAGAGAATTCGACGAAATGGC 59.629 43.478 15.22 5.19 0.00 4.40
5300 11094 2.972625 AGAGAATTCGACGAAATGGCA 58.027 42.857 15.22 0.00 0.00 4.92
5301 11095 2.673368 AGAGAATTCGACGAAATGGCAC 59.327 45.455 15.22 4.82 0.00 5.01
5302 11096 2.673368 GAGAATTCGACGAAATGGCACT 59.327 45.455 15.22 7.64 0.00 4.40
5303 11097 2.673368 AGAATTCGACGAAATGGCACTC 59.327 45.455 15.22 3.38 0.00 3.51
5304 11098 2.093306 ATTCGACGAAATGGCACTCA 57.907 45.000 15.22 0.00 0.00 3.41
5305 11099 1.144969 TTCGACGAAATGGCACTCAC 58.855 50.000 8.05 0.00 0.00 3.51
5306 11100 0.317160 TCGACGAAATGGCACTCACT 59.683 50.000 0.00 0.00 0.00 3.41
5307 11101 0.716108 CGACGAAATGGCACTCACTC 59.284 55.000 0.00 0.00 0.00 3.51
5308 11102 1.079503 GACGAAATGGCACTCACTCC 58.920 55.000 0.00 0.00 0.00 3.85
5309 11103 0.687354 ACGAAATGGCACTCACTCCT 59.313 50.000 0.00 0.00 0.00 3.69
5310 11104 1.072331 ACGAAATGGCACTCACTCCTT 59.928 47.619 0.00 0.00 0.00 3.36
5311 11105 2.154462 CGAAATGGCACTCACTCCTTT 58.846 47.619 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 5497 5.104151 TCTCAGCCCCAAAATTTTCCTTTTT 60.104 36.000 0.00 0.00 0.00 1.94
69 5508 6.407979 GGCATTTTATTATCTCAGCCCCAAAA 60.408 38.462 0.00 0.00 34.94 2.44
70 5509 5.070313 GGCATTTTATTATCTCAGCCCCAAA 59.930 40.000 0.00 0.00 34.94 3.28
73 5512 4.151883 TGGCATTTTATTATCTCAGCCCC 58.848 43.478 0.00 0.00 40.08 5.80
117 5557 7.767198 ACATGGCAATCTTAATTTTGGAGAATG 59.233 33.333 0.00 0.00 0.00 2.67
121 5561 7.325694 AGAACATGGCAATCTTAATTTTGGAG 58.674 34.615 0.00 0.00 0.00 3.86
133 5575 6.389091 TGTTATGACAAAGAACATGGCAATC 58.611 36.000 0.00 0.00 39.73 2.67
208 5650 4.713321 AGCATGCCACTTTTTATCTGGAAT 59.287 37.500 15.66 0.00 0.00 3.01
248 5691 5.765176 CATGTCACTTTTTGAAGAGCATGA 58.235 37.500 0.00 0.00 35.39 3.07
294 5737 8.518430 TGGCATTTTTATTACTAAGAGCATGA 57.482 30.769 0.00 0.00 0.00 3.07
295 5738 9.188588 CATGGCATTTTTATTACTAAGAGCATG 57.811 33.333 0.00 0.00 0.00 4.06
296 5739 7.869429 GCATGGCATTTTTATTACTAAGAGCAT 59.131 33.333 0.00 0.00 0.00 3.79
297 5740 7.068593 AGCATGGCATTTTTATTACTAAGAGCA 59.931 33.333 0.00 0.00 0.00 4.26
298 5741 7.428826 AGCATGGCATTTTTATTACTAAGAGC 58.571 34.615 0.00 0.00 0.00 4.09
299 5742 8.844244 AGAGCATGGCATTTTTATTACTAAGAG 58.156 33.333 0.00 0.00 0.00 2.85
300 5743 8.752005 AGAGCATGGCATTTTTATTACTAAGA 57.248 30.769 0.00 0.00 0.00 2.10
301 5744 9.807649 AAAGAGCATGGCATTTTTATTACTAAG 57.192 29.630 0.00 0.00 0.00 2.18
302 5745 9.585099 CAAAGAGCATGGCATTTTTATTACTAA 57.415 29.630 0.00 0.00 0.00 2.24
303 5746 8.965819 TCAAAGAGCATGGCATTTTTATTACTA 58.034 29.630 0.00 0.00 0.00 1.82
304 5747 7.839907 TCAAAGAGCATGGCATTTTTATTACT 58.160 30.769 0.00 0.00 0.00 2.24
305 5748 8.382875 GTTCAAAGAGCATGGCATTTTTATTAC 58.617 33.333 0.00 0.00 0.00 1.89
306 5749 8.093307 TGTTCAAAGAGCATGGCATTTTTATTA 58.907 29.630 0.00 0.00 0.00 0.98
307 5750 6.935771 TGTTCAAAGAGCATGGCATTTTTATT 59.064 30.769 0.00 0.00 0.00 1.40
308 5751 6.465948 TGTTCAAAGAGCATGGCATTTTTAT 58.534 32.000 0.00 0.00 0.00 1.40
309 5752 5.851720 TGTTCAAAGAGCATGGCATTTTTA 58.148 33.333 0.00 0.00 0.00 1.52
310 5753 4.706035 TGTTCAAAGAGCATGGCATTTTT 58.294 34.783 0.00 0.00 0.00 1.94
311 5754 4.339872 TGTTCAAAGAGCATGGCATTTT 57.660 36.364 0.00 0.00 0.00 1.82
312 5755 4.546829 ATGTTCAAAGAGCATGGCATTT 57.453 36.364 0.00 0.00 32.54 2.32
313 5756 4.546829 AATGTTCAAAGAGCATGGCATT 57.453 36.364 0.00 0.00 33.97 3.56
314 5757 4.546829 AAATGTTCAAAGAGCATGGCAT 57.453 36.364 0.00 0.00 33.97 4.40
315 5758 5.185442 TCATAAATGTTCAAAGAGCATGGCA 59.815 36.000 0.00 0.00 33.97 4.92
316 5759 5.653507 TCATAAATGTTCAAAGAGCATGGC 58.346 37.500 0.00 0.00 33.97 4.40
328 5771 7.331440 TGTTCACATGGCAATTCATAAATGTTC 59.669 33.333 0.00 0.00 0.00 3.18
332 5775 7.557724 TGATGTTCACATGGCAATTCATAAAT 58.442 30.769 0.00 0.00 36.57 1.40
502 5947 8.830201 TTTTATTTTGCATTGTAGAGCATTGT 57.170 26.923 0.00 0.00 40.94 2.71
545 5990 9.189156 TCTATTATAAAGAGCATGGCACTTTTT 57.811 29.630 16.47 12.18 44.33 1.94
649 6094 7.392673 AGAGCATGTCATTTTTGTATGAAGAGT 59.607 33.333 0.00 0.00 36.37 3.24
845 6298 1.834378 CTCGGGAGCTCCTATGGCA 60.834 63.158 31.36 8.87 35.95 4.92
861 6317 5.800438 GGACGCCTTTTGTCATTAATTTCTC 59.200 40.000 0.00 0.00 38.10 2.87
869 6325 2.154462 CAGAGGACGCCTTTTGTCATT 58.846 47.619 0.00 0.00 38.10 2.57
1030 6577 2.000164 GGGGGAGAAAGGAGGGTTC 59.000 63.158 0.00 0.00 0.00 3.62
1088 6640 0.796870 CGAATTTTTCGCCCGCCTTC 60.797 55.000 0.00 0.00 46.97 3.46
1110 6662 3.781307 CCCTTCGCCGATCACCCA 61.781 66.667 0.00 0.00 0.00 4.51
1377 6939 1.899437 AACGCCGTCCATCAGTCCAT 61.899 55.000 0.00 0.00 0.00 3.41
1387 6949 4.776647 GCATTGCCAACGCCGTCC 62.777 66.667 0.00 0.00 0.00 4.79
1410 6972 4.412796 TCGGGAAGAAGACGTAGATCTA 57.587 45.455 0.00 0.00 0.00 1.98
1625 7187 7.681304 GCACTGGATATTAGTCAGACGAGTAAA 60.681 40.741 0.00 0.00 39.82 2.01
1626 7188 6.238676 GCACTGGATATTAGTCAGACGAGTAA 60.239 42.308 0.00 0.00 40.49 2.24
1820 7382 3.879892 GCAAAGGGTTGGCAAATTTGTAA 59.120 39.130 23.43 11.93 35.10 2.41
1866 7431 8.487176 CACATAATGACATGATTGCATCAATTG 58.513 33.333 0.00 0.00 43.50 2.32
2006 7571 1.678627 TGTTTCATCCCAACACAACCG 59.321 47.619 0.00 0.00 0.00 4.44
2210 7784 5.591067 CCTGGTACTTGGTGTCTAACAAAAA 59.409 40.000 0.00 0.00 0.00 1.94
2280 7861 4.948621 TCCTAGTAGTTCTGCAAGTAGGAC 59.051 45.833 12.91 0.00 39.38 3.85
2303 7884 7.633018 ATTTGTAGTGGACATAGGGATATGT 57.367 36.000 0.66 0.66 42.80 2.29
2395 7979 5.503376 GTCATACTGAACGCAAATTAACACG 59.497 40.000 0.00 0.00 0.00 4.49
2408 7992 7.709269 TGACTTAACAGTTGTCATACTGAAC 57.291 36.000 16.93 0.00 46.72 3.18
2508 8092 8.304596 TCATCCCGATTCTACACTTGATAATAC 58.695 37.037 0.00 0.00 0.00 1.89
2592 8176 1.485480 AGCCTCTCATGACATCACCAG 59.515 52.381 0.00 0.00 0.00 4.00
2607 8191 2.027192 TGTGTCTAACATTCCCAGCCTC 60.027 50.000 0.00 0.00 32.36 4.70
2757 8423 6.147821 ACCTATGCGAAACATAATGCTCATAC 59.852 38.462 0.00 0.00 40.75 2.39
2852 8518 8.834004 TGGTACACTTATCTCTAACATTACCT 57.166 34.615 0.00 0.00 0.00 3.08
3006 8678 4.877378 ATCGTTCAACCACTACCAAGTA 57.123 40.909 0.00 0.00 33.48 2.24
3038 8710 7.244166 TGAAAATTGATGAATGCAAAACGTT 57.756 28.000 0.00 0.00 0.00 3.99
3081 8753 2.952310 GGAAGACATATGGGCCAAACTC 59.048 50.000 11.89 2.80 0.00 3.01
3086 8759 3.756082 AAAAGGAAGACATATGGGCCA 57.244 42.857 9.61 9.61 0.00 5.36
3286 8969 1.502231 CACGCCTCATGCCATAGTAC 58.498 55.000 0.00 0.00 36.24 2.73
3319 9002 3.329889 TCGCTGGGCCTGGTGATT 61.330 61.111 12.70 0.00 0.00 2.57
3405 9088 3.500680 CGGTGTACTGGTAGCAACAATTT 59.499 43.478 1.17 0.00 0.00 1.82
3411 9094 0.604578 GTCCGGTGTACTGGTAGCAA 59.395 55.000 9.58 0.00 43.01 3.91
3485 9185 8.114359 TCGAATTTTGATATGAAATTTTCCGC 57.886 30.769 6.68 0.00 36.96 5.54
3535 9235 9.414295 CAATTATCACACTGATGTCAAATTTGT 57.586 29.630 17.47 0.00 37.70 2.83
3565 9265 7.939588 ACCTAATATAAGTTGGGCTTCAGATTC 59.060 37.037 0.00 0.00 38.57 2.52
3659 9361 1.990799 TCGATGACCGATGTTGTCAC 58.009 50.000 0.00 0.00 44.85 3.67
3669 9371 1.059122 CACAACATCGTTCGATGACCG 59.941 52.381 32.15 22.87 43.23 4.79
3670 9372 2.066262 ACACAACATCGTTCGATGACC 58.934 47.619 32.15 0.00 43.23 4.02
3671 9373 2.729360 TGACACAACATCGTTCGATGAC 59.271 45.455 32.15 18.59 43.23 3.06
3672 9374 3.019933 TGACACAACATCGTTCGATGA 57.980 42.857 32.15 12.53 43.23 2.92
3673 9375 3.786657 TTGACACAACATCGTTCGATG 57.213 42.857 26.49 26.49 45.28 3.84
3674 9376 3.424829 GCATTGACACAACATCGTTCGAT 60.425 43.478 1.68 1.68 0.00 3.59
3675 9377 2.096466 GCATTGACACAACATCGTTCGA 60.096 45.455 0.00 0.00 0.00 3.71
3676 9378 2.233355 GCATTGACACAACATCGTTCG 58.767 47.619 0.00 0.00 0.00 3.95
3720 9423 3.005684 GGTTGCACATCCAGAAATGTTCA 59.994 43.478 0.00 0.00 37.78 3.18
3721 9424 3.578688 GGTTGCACATCCAGAAATGTTC 58.421 45.455 0.00 0.00 37.78 3.18
3767 9470 3.995597 TGGTACACCAGGGCAACT 58.004 55.556 0.00 0.00 42.01 3.16
3775 9478 0.324923 AGGGCGTATCTGGTACACCA 60.325 55.000 7.39 0.28 45.30 4.17
3776 9479 0.388294 GAGGGCGTATCTGGTACACC 59.612 60.000 0.00 0.00 35.22 4.16
3777 9480 0.030369 CGAGGGCGTATCTGGTACAC 59.970 60.000 0.00 0.00 32.61 2.90
3778 9481 2.411535 CGAGGGCGTATCTGGTACA 58.588 57.895 0.00 0.00 32.61 2.90
3789 9492 2.182030 GGAACTCAGACGAGGGCG 59.818 66.667 0.00 0.00 44.17 6.13
3790 9493 1.079750 GTGGAACTCAGACGAGGGC 60.080 63.158 0.00 0.00 44.17 5.19
3902 9616 5.412904 GCACTAAGGCAGTTCAGAAAGTAAT 59.587 40.000 0.00 0.00 34.26 1.89
3903 9617 4.755123 GCACTAAGGCAGTTCAGAAAGTAA 59.245 41.667 0.00 0.00 34.26 2.24
4012 9727 4.651994 CAAAGAGTTATTTAGCAGTGCCG 58.348 43.478 12.58 0.00 0.00 5.69
4013 9728 4.156739 AGCAAAGAGTTATTTAGCAGTGCC 59.843 41.667 12.58 0.00 0.00 5.01
4061 9789 4.423625 ACAGGAGCACTAAACTGAACTT 57.576 40.909 0.00 0.00 35.08 2.66
4212 9942 2.341846 AAAAGCTCGAGGTTCACCAA 57.658 45.000 28.42 0.00 38.89 3.67
4229 9959 1.252175 TCGCATAGGCAAGGCAAAAA 58.748 45.000 0.00 0.00 41.24 1.94
4239 9969 0.250467 ACCCATCACATCGCATAGGC 60.250 55.000 0.00 0.00 0.00 3.93
4278 10008 8.122330 GCAATGTGAAACCTAAAAAGGAAAAAG 58.878 33.333 0.00 0.00 34.36 2.27
4291 10021 1.238439 CCGTGAGCAATGTGAAACCT 58.762 50.000 0.00 0.00 34.36 3.50
4416 10149 2.363306 TCACAAGTGACAGGCCAAAT 57.637 45.000 5.01 0.00 34.14 2.32
4444 10182 9.674824 GCAATCATTCTTCTAACCTGATTATTG 57.325 33.333 0.00 0.00 35.41 1.90
4448 10186 8.270744 AGTAGCAATCATTCTTCTAACCTGATT 58.729 33.333 0.00 0.00 37.10 2.57
4450 10188 7.187824 AGTAGCAATCATTCTTCTAACCTGA 57.812 36.000 0.00 0.00 0.00 3.86
4476 10214 3.904136 AAAAGGTTCGTTGATCAGCTG 57.096 42.857 7.63 7.63 0.00 4.24
4516 10254 6.354130 TGGGCATAACTGTTTTATCTCTACC 58.646 40.000 0.00 0.00 0.00 3.18
4569 10308 6.210796 TGCTTGAGAATCTTGATGTTTTGTG 58.789 36.000 0.00 0.00 34.92 3.33
4667 10434 4.746729 TGCATTGTGGCTCATAAATTGTC 58.253 39.130 0.00 0.00 34.04 3.18
4693 10460 3.760035 CTCCACCGCGTGCCTAGT 61.760 66.667 4.92 0.00 31.34 2.57
4868 10662 0.179108 GGAGCAGATACACCACGTCC 60.179 60.000 0.00 0.00 0.00 4.79
4869 10663 0.179108 GGGAGCAGATACACCACGTC 60.179 60.000 0.00 0.00 0.00 4.34
4870 10664 1.898154 GGGAGCAGATACACCACGT 59.102 57.895 0.00 0.00 0.00 4.49
4871 10665 1.226974 CGGGAGCAGATACACCACG 60.227 63.158 0.00 0.00 0.00 4.94
4872 10666 0.103208 CTCGGGAGCAGATACACCAC 59.897 60.000 0.00 0.00 0.00 4.16
4873 10667 2.504920 CTCGGGAGCAGATACACCA 58.495 57.895 0.00 0.00 0.00 4.17
4884 10678 0.813210 GAGGCATTTGAGCTCGGGAG 60.813 60.000 9.64 0.30 34.17 4.30
4885 10679 1.221840 GAGGCATTTGAGCTCGGGA 59.778 57.895 9.64 0.00 34.17 5.14
4886 10680 1.821332 GGAGGCATTTGAGCTCGGG 60.821 63.158 9.64 0.00 34.17 5.14
4887 10681 0.465705 TAGGAGGCATTTGAGCTCGG 59.534 55.000 9.64 0.00 34.17 4.63
4888 10682 1.137872 AGTAGGAGGCATTTGAGCTCG 59.862 52.381 9.64 0.00 34.17 5.03
4889 10683 2.169352 TCAGTAGGAGGCATTTGAGCTC 59.831 50.000 6.82 6.82 34.17 4.09
4890 10684 2.191400 TCAGTAGGAGGCATTTGAGCT 58.809 47.619 0.00 0.00 34.17 4.09
4891 10685 2.680339 GTTCAGTAGGAGGCATTTGAGC 59.320 50.000 0.00 0.00 0.00 4.26
4892 10686 3.942829 TGTTCAGTAGGAGGCATTTGAG 58.057 45.455 0.00 0.00 0.00 3.02
4893 10687 4.574674 ATGTTCAGTAGGAGGCATTTGA 57.425 40.909 0.00 0.00 0.00 2.69
4894 10688 5.647658 TGTAATGTTCAGTAGGAGGCATTTG 59.352 40.000 0.00 0.00 35.75 2.32
4895 10689 5.815581 TGTAATGTTCAGTAGGAGGCATTT 58.184 37.500 0.00 0.00 35.75 2.32
4896 10690 5.435686 TGTAATGTTCAGTAGGAGGCATT 57.564 39.130 0.00 0.00 37.04 3.56
4897 10691 5.435686 TTGTAATGTTCAGTAGGAGGCAT 57.564 39.130 0.00 0.00 0.00 4.40
4898 10692 4.901197 TTGTAATGTTCAGTAGGAGGCA 57.099 40.909 0.00 0.00 0.00 4.75
4899 10693 7.859325 TTTATTGTAATGTTCAGTAGGAGGC 57.141 36.000 0.00 0.00 0.00 4.70
4975 10769 7.983307 ACTGAAATTTTGCAAGCATACAAAAA 58.017 26.923 12.70 0.00 45.77 1.94
4976 10770 7.551035 ACTGAAATTTTGCAAGCATACAAAA 57.449 28.000 11.53 11.53 46.44 2.44
4977 10771 8.654230 TTACTGAAATTTTGCAAGCATACAAA 57.346 26.923 0.00 0.00 34.11 2.83
4978 10772 8.140628 TCTTACTGAAATTTTGCAAGCATACAA 58.859 29.630 0.00 0.00 0.00 2.41
4979 10773 7.656412 TCTTACTGAAATTTTGCAAGCATACA 58.344 30.769 0.00 0.00 0.00 2.29
4980 10774 8.519492 TTCTTACTGAAATTTTGCAAGCATAC 57.481 30.769 0.00 0.00 0.00 2.39
4995 10789 5.411361 CCCACGAATGTCATTTCTTACTGAA 59.589 40.000 0.00 0.00 0.00 3.02
4996 10790 4.935205 CCCACGAATGTCATTTCTTACTGA 59.065 41.667 0.00 0.00 0.00 3.41
4997 10791 4.935205 TCCCACGAATGTCATTTCTTACTG 59.065 41.667 0.00 0.00 0.00 2.74
4998 10792 5.160607 TCCCACGAATGTCATTTCTTACT 57.839 39.130 0.00 0.00 0.00 2.24
4999 10793 4.935808 ACTCCCACGAATGTCATTTCTTAC 59.064 41.667 0.00 0.00 0.00 2.34
5000 10794 5.160607 ACTCCCACGAATGTCATTTCTTA 57.839 39.130 0.00 0.00 0.00 2.10
5001 10795 4.003648 GACTCCCACGAATGTCATTTCTT 58.996 43.478 0.00 0.00 0.00 2.52
5002 10796 3.007940 TGACTCCCACGAATGTCATTTCT 59.992 43.478 0.00 0.00 34.94 2.52
5003 10797 3.334691 TGACTCCCACGAATGTCATTTC 58.665 45.455 0.00 0.00 34.94 2.17
5004 10798 3.417069 TGACTCCCACGAATGTCATTT 57.583 42.857 0.00 0.00 34.94 2.32
5005 10799 3.273434 CATGACTCCCACGAATGTCATT 58.727 45.455 0.00 0.00 44.62 2.57
5006 10800 2.237143 ACATGACTCCCACGAATGTCAT 59.763 45.455 0.00 0.00 46.92 3.06
5007 10801 1.623311 ACATGACTCCCACGAATGTCA 59.377 47.619 0.00 0.00 42.50 3.58
5008 10802 2.271800 GACATGACTCCCACGAATGTC 58.728 52.381 0.00 0.00 40.06 3.06
5009 10803 1.623311 TGACATGACTCCCACGAATGT 59.377 47.619 0.00 0.00 34.28 2.71
5010 10804 2.385013 TGACATGACTCCCACGAATG 57.615 50.000 0.00 0.00 0.00 2.67
5011 10805 3.417069 TTTGACATGACTCCCACGAAT 57.583 42.857 0.00 0.00 0.00 3.34
5012 10806 2.920724 TTTGACATGACTCCCACGAA 57.079 45.000 0.00 0.00 0.00 3.85
5013 10807 2.920724 TTTTGACATGACTCCCACGA 57.079 45.000 0.00 0.00 0.00 4.35
5032 10826 6.376581 TGGAGCATGGATTTTGTTTTGTTTTT 59.623 30.769 0.00 0.00 0.00 1.94
5033 10827 5.884792 TGGAGCATGGATTTTGTTTTGTTTT 59.115 32.000 0.00 0.00 0.00 2.43
5034 10828 5.435291 TGGAGCATGGATTTTGTTTTGTTT 58.565 33.333 0.00 0.00 0.00 2.83
5035 10829 5.033589 TGGAGCATGGATTTTGTTTTGTT 57.966 34.783 0.00 0.00 0.00 2.83
5036 10830 4.686191 TGGAGCATGGATTTTGTTTTGT 57.314 36.364 0.00 0.00 0.00 2.83
5037 10831 6.374565 TTTTGGAGCATGGATTTTGTTTTG 57.625 33.333 0.00 0.00 0.00 2.44
5038 10832 7.427214 CAATTTTGGAGCATGGATTTTGTTTT 58.573 30.769 0.00 0.00 0.00 2.43
5039 10833 6.515365 GCAATTTTGGAGCATGGATTTTGTTT 60.515 34.615 0.00 0.00 0.00 2.83
5040 10834 5.048573 GCAATTTTGGAGCATGGATTTTGTT 60.049 36.000 0.00 0.00 0.00 2.83
5041 10835 4.456566 GCAATTTTGGAGCATGGATTTTGT 59.543 37.500 0.00 0.00 0.00 2.83
5042 10836 4.698304 AGCAATTTTGGAGCATGGATTTTG 59.302 37.500 0.00 0.00 0.00 2.44
5043 10837 4.913784 AGCAATTTTGGAGCATGGATTTT 58.086 34.783 0.00 0.00 0.00 1.82
5044 10838 4.563140 AGCAATTTTGGAGCATGGATTT 57.437 36.364 0.00 0.00 0.00 2.17
5045 10839 4.713321 ACTAGCAATTTTGGAGCATGGATT 59.287 37.500 0.00 0.00 0.00 3.01
5046 10840 4.284178 ACTAGCAATTTTGGAGCATGGAT 58.716 39.130 0.00 0.00 0.00 3.41
5047 10841 3.700538 ACTAGCAATTTTGGAGCATGGA 58.299 40.909 0.00 0.00 0.00 3.41
5048 10842 4.460948 AACTAGCAATTTTGGAGCATGG 57.539 40.909 0.00 0.00 0.00 3.66
5049 10843 5.927689 TCAAAACTAGCAATTTTGGAGCATG 59.072 36.000 13.90 0.00 43.94 4.06
5050 10844 6.100404 TCAAAACTAGCAATTTTGGAGCAT 57.900 33.333 13.90 0.00 43.94 3.79
5051 10845 5.528043 TCAAAACTAGCAATTTTGGAGCA 57.472 34.783 13.90 0.00 43.94 4.26
5052 10846 6.843069 TTTCAAAACTAGCAATTTTGGAGC 57.157 33.333 13.90 0.00 43.94 4.70
5053 10847 8.195617 TGTTTTCAAAACTAGCAATTTTGGAG 57.804 30.769 14.10 0.00 43.94 3.86
5054 10848 8.729805 ATGTTTTCAAAACTAGCAATTTTGGA 57.270 26.923 14.10 5.81 43.94 3.53
5055 10849 9.786105 AAATGTTTTCAAAACTAGCAATTTTGG 57.214 25.926 14.10 0.00 43.94 3.28
5058 10852 9.786105 CCAAAATGTTTTCAAAACTAGCAATTT 57.214 25.926 14.10 8.17 0.00 1.82
5059 10853 9.171877 TCCAAAATGTTTTCAAAACTAGCAATT 57.828 25.926 14.10 2.59 0.00 2.32
5060 10854 8.729805 TCCAAAATGTTTTCAAAACTAGCAAT 57.270 26.923 14.10 0.00 0.00 3.56
5061 10855 7.821846 ACTCCAAAATGTTTTCAAAACTAGCAA 59.178 29.630 14.10 0.00 0.00 3.91
5062 10856 7.277539 CACTCCAAAATGTTTTCAAAACTAGCA 59.722 33.333 14.10 0.00 0.00 3.49
5063 10857 7.621102 CACTCCAAAATGTTTTCAAAACTAGC 58.379 34.615 14.10 0.00 0.00 3.42
5064 10858 7.492344 AGCACTCCAAAATGTTTTCAAAACTAG 59.508 33.333 14.10 3.54 0.00 2.57
5065 10859 7.277539 CAGCACTCCAAAATGTTTTCAAAACTA 59.722 33.333 14.10 1.57 0.00 2.24
5066 10860 6.092533 CAGCACTCCAAAATGTTTTCAAAACT 59.907 34.615 14.10 0.00 0.00 2.66
5067 10861 6.091986 TCAGCACTCCAAAATGTTTTCAAAAC 59.908 34.615 6.02 6.02 0.00 2.43
5068 10862 6.169094 TCAGCACTCCAAAATGTTTTCAAAA 58.831 32.000 0.00 0.00 0.00 2.44
5069 10863 5.728471 TCAGCACTCCAAAATGTTTTCAAA 58.272 33.333 0.00 0.00 0.00 2.69
5070 10864 5.336150 TCAGCACTCCAAAATGTTTTCAA 57.664 34.783 0.00 0.00 0.00 2.69
5071 10865 4.998671 TCAGCACTCCAAAATGTTTTCA 57.001 36.364 0.00 0.00 0.00 2.69
5072 10866 6.849588 AAATCAGCACTCCAAAATGTTTTC 57.150 33.333 0.00 0.00 0.00 2.29
5073 10867 6.598850 ACAAAATCAGCACTCCAAAATGTTTT 59.401 30.769 0.00 0.00 0.00 2.43
5074 10868 6.114767 ACAAAATCAGCACTCCAAAATGTTT 58.885 32.000 0.00 0.00 0.00 2.83
5075 10869 5.673514 ACAAAATCAGCACTCCAAAATGTT 58.326 33.333 0.00 0.00 0.00 2.71
5076 10870 5.280654 ACAAAATCAGCACTCCAAAATGT 57.719 34.783 0.00 0.00 0.00 2.71
5077 10871 6.607735 AAACAAAATCAGCACTCCAAAATG 57.392 33.333 0.00 0.00 0.00 2.32
5078 10872 7.628769 AAAAACAAAATCAGCACTCCAAAAT 57.371 28.000 0.00 0.00 0.00 1.82
5100 10894 2.755655 TCTTGGAAGTCGTTGCCAAAAA 59.244 40.909 0.00 0.00 40.83 1.94
5101 10895 2.370349 TCTTGGAAGTCGTTGCCAAAA 58.630 42.857 0.00 0.00 40.83 2.44
5102 10896 2.045561 TCTTGGAAGTCGTTGCCAAA 57.954 45.000 0.00 0.00 40.83 3.28
5103 10897 2.045561 TTCTTGGAAGTCGTTGCCAA 57.954 45.000 0.00 0.00 39.23 4.52
5104 10898 1.946768 CTTTCTTGGAAGTCGTTGCCA 59.053 47.619 0.00 0.00 0.00 4.92
5105 10899 1.947456 ACTTTCTTGGAAGTCGTTGCC 59.053 47.619 0.00 0.00 34.94 4.52
5106 10900 3.254827 GACTTTCTTGGAAGTCGTTGC 57.745 47.619 6.10 0.00 44.12 4.17
5112 10906 4.202151 GCACCAAATGACTTTCTTGGAAGT 60.202 41.667 7.05 0.00 41.88 3.01
5113 10907 4.038402 AGCACCAAATGACTTTCTTGGAAG 59.962 41.667 7.05 1.09 41.88 3.46
5114 10908 3.960102 AGCACCAAATGACTTTCTTGGAA 59.040 39.130 7.05 0.00 41.88 3.53
5115 10909 3.318839 CAGCACCAAATGACTTTCTTGGA 59.681 43.478 7.05 0.00 41.88 3.53
5116 10910 3.318839 TCAGCACCAAATGACTTTCTTGG 59.681 43.478 0.00 0.00 44.35 3.61
5117 10911 4.572985 TCAGCACCAAATGACTTTCTTG 57.427 40.909 0.00 0.00 0.00 3.02
5118 10912 5.596836 TTTCAGCACCAAATGACTTTCTT 57.403 34.783 0.00 0.00 0.00 2.52
5119 10913 5.796424 ATTTCAGCACCAAATGACTTTCT 57.204 34.783 0.00 0.00 0.00 2.52
5120 10914 6.293027 CCAAATTTCAGCACCAAATGACTTTC 60.293 38.462 0.00 0.00 0.00 2.62
5121 10915 5.528320 CCAAATTTCAGCACCAAATGACTTT 59.472 36.000 0.00 0.00 0.00 2.66
5122 10916 5.058490 CCAAATTTCAGCACCAAATGACTT 58.942 37.500 0.00 0.00 0.00 3.01
5123 10917 4.101430 ACCAAATTTCAGCACCAAATGACT 59.899 37.500 0.00 0.00 0.00 3.41
5124 10918 4.379652 ACCAAATTTCAGCACCAAATGAC 58.620 39.130 0.00 0.00 0.00 3.06
5125 10919 4.686191 ACCAAATTTCAGCACCAAATGA 57.314 36.364 0.00 0.00 0.00 2.57
5126 10920 5.163834 GCATACCAAATTTCAGCACCAAATG 60.164 40.000 0.00 0.00 0.00 2.32
5127 10921 4.937015 GCATACCAAATTTCAGCACCAAAT 59.063 37.500 0.00 0.00 0.00 2.32
5128 10922 4.202295 TGCATACCAAATTTCAGCACCAAA 60.202 37.500 0.00 0.00 0.00 3.28
5129 10923 3.323115 TGCATACCAAATTTCAGCACCAA 59.677 39.130 0.00 0.00 0.00 3.67
5130 10924 2.896044 TGCATACCAAATTTCAGCACCA 59.104 40.909 0.00 0.00 0.00 4.17
5131 10925 3.591196 TGCATACCAAATTTCAGCACC 57.409 42.857 0.00 0.00 0.00 5.01
5132 10926 5.649557 TGTATGCATACCAAATTTCAGCAC 58.350 37.500 29.36 6.93 32.92 4.40
5133 10927 5.911378 TGTATGCATACCAAATTTCAGCA 57.089 34.783 29.36 7.63 32.33 4.41
5134 10928 7.593875 TTTTGTATGCATACCAAATTTCAGC 57.406 32.000 29.36 5.18 32.33 4.26
5202 10996 8.250332 GCACCCTGATGAATAGTAAAATCAAAA 58.750 33.333 0.00 0.00 0.00 2.44
5203 10997 7.395772 TGCACCCTGATGAATAGTAAAATCAAA 59.604 33.333 0.00 0.00 0.00 2.69
5204 10998 6.889177 TGCACCCTGATGAATAGTAAAATCAA 59.111 34.615 0.00 0.00 0.00 2.57
5205 10999 6.422333 TGCACCCTGATGAATAGTAAAATCA 58.578 36.000 0.00 0.00 0.00 2.57
5206 11000 6.942532 TGCACCCTGATGAATAGTAAAATC 57.057 37.500 0.00 0.00 0.00 2.17
5207 11001 7.902920 AATGCACCCTGATGAATAGTAAAAT 57.097 32.000 0.00 0.00 0.00 1.82
5208 11002 7.395772 TCAAATGCACCCTGATGAATAGTAAAA 59.604 33.333 0.00 0.00 0.00 1.52
5209 11003 6.889177 TCAAATGCACCCTGATGAATAGTAAA 59.111 34.615 0.00 0.00 0.00 2.01
5210 11004 6.422333 TCAAATGCACCCTGATGAATAGTAA 58.578 36.000 0.00 0.00 0.00 2.24
5211 11005 6.000246 TCAAATGCACCCTGATGAATAGTA 58.000 37.500 0.00 0.00 0.00 1.82
5212 11006 4.858850 TCAAATGCACCCTGATGAATAGT 58.141 39.130 0.00 0.00 0.00 2.12
5213 11007 4.261489 GCTCAAATGCACCCTGATGAATAG 60.261 45.833 0.00 0.00 0.00 1.73
5214 11008 3.633525 GCTCAAATGCACCCTGATGAATA 59.366 43.478 0.00 0.00 0.00 1.75
5215 11009 2.429610 GCTCAAATGCACCCTGATGAAT 59.570 45.455 0.00 0.00 0.00 2.57
5216 11010 1.820519 GCTCAAATGCACCCTGATGAA 59.179 47.619 0.00 0.00 0.00 2.57
5217 11011 1.005097 AGCTCAAATGCACCCTGATGA 59.995 47.619 0.00 0.00 34.99 2.92
5218 11012 1.404391 GAGCTCAAATGCACCCTGATG 59.596 52.381 9.40 0.00 34.99 3.07
5219 11013 1.005097 TGAGCTCAAATGCACCCTGAT 59.995 47.619 15.67 0.00 34.99 2.90
5220 11014 0.401356 TGAGCTCAAATGCACCCTGA 59.599 50.000 15.67 0.00 34.99 3.86
5221 11015 0.809385 CTGAGCTCAAATGCACCCTG 59.191 55.000 18.85 0.00 34.99 4.45
5222 11016 0.323178 CCTGAGCTCAAATGCACCCT 60.323 55.000 18.85 0.00 34.99 4.34
5223 11017 0.322816 TCCTGAGCTCAAATGCACCC 60.323 55.000 18.85 0.00 34.99 4.61
5224 11018 1.674962 GATCCTGAGCTCAAATGCACC 59.325 52.381 18.85 0.00 34.99 5.01
5225 11019 2.355132 CTGATCCTGAGCTCAAATGCAC 59.645 50.000 18.85 7.92 34.99 4.57
5226 11020 2.237893 TCTGATCCTGAGCTCAAATGCA 59.762 45.455 18.85 12.49 34.99 3.96
5227 11021 2.915349 TCTGATCCTGAGCTCAAATGC 58.085 47.619 18.85 8.47 0.00 3.56
5228 11022 6.935208 TCATATTCTGATCCTGAGCTCAAATG 59.065 38.462 18.85 9.42 0.00 2.32
5229 11023 6.935771 GTCATATTCTGATCCTGAGCTCAAAT 59.064 38.462 18.85 14.02 35.97 2.32
5230 11024 6.099413 AGTCATATTCTGATCCTGAGCTCAAA 59.901 38.462 18.85 9.43 35.97 2.69
5231 11025 5.601729 AGTCATATTCTGATCCTGAGCTCAA 59.398 40.000 18.85 3.88 35.97 3.02
5232 11026 5.146298 AGTCATATTCTGATCCTGAGCTCA 58.854 41.667 17.19 17.19 35.97 4.26
5233 11027 5.726980 AGTCATATTCTGATCCTGAGCTC 57.273 43.478 6.82 6.82 35.97 4.09
5234 11028 5.278907 CGAAGTCATATTCTGATCCTGAGCT 60.279 44.000 0.00 0.00 35.97 4.09
5235 11029 4.922692 CGAAGTCATATTCTGATCCTGAGC 59.077 45.833 0.00 0.00 35.97 4.26
5236 11030 4.922692 GCGAAGTCATATTCTGATCCTGAG 59.077 45.833 0.00 0.00 35.97 3.35
5237 11031 4.342092 TGCGAAGTCATATTCTGATCCTGA 59.658 41.667 0.00 0.00 35.97 3.86
5238 11032 4.625028 TGCGAAGTCATATTCTGATCCTG 58.375 43.478 0.00 0.00 35.97 3.86
5239 11033 4.343526 ACTGCGAAGTCATATTCTGATCCT 59.656 41.667 0.00 0.00 35.97 3.24
5240 11034 4.447054 CACTGCGAAGTCATATTCTGATCC 59.553 45.833 0.00 0.00 35.97 3.36
5241 11035 4.447054 CCACTGCGAAGTCATATTCTGATC 59.553 45.833 0.00 0.00 35.97 2.92
5242 11036 4.375272 CCACTGCGAAGTCATATTCTGAT 58.625 43.478 0.00 0.00 35.97 2.90
5243 11037 3.785486 CCACTGCGAAGTCATATTCTGA 58.215 45.455 0.00 0.00 0.00 3.27
5244 11038 2.286294 GCCACTGCGAAGTCATATTCTG 59.714 50.000 0.00 0.00 0.00 3.02
5245 11039 2.555199 GCCACTGCGAAGTCATATTCT 58.445 47.619 0.00 0.00 0.00 2.40
5258 11052 2.075426 AAAGAAAGGTGCGCCACTGC 62.075 55.000 20.59 3.39 37.19 4.40
5259 11053 0.318107 CAAAGAAAGGTGCGCCACTG 60.318 55.000 20.59 2.10 37.19 3.66
5260 11054 0.465460 TCAAAGAAAGGTGCGCCACT 60.465 50.000 20.59 11.74 37.19 4.00
5261 11055 0.383949 TTCAAAGAAAGGTGCGCCAC 59.616 50.000 20.59 9.50 37.19 5.01
5262 11056 0.667993 CTTCAAAGAAAGGTGCGCCA 59.332 50.000 20.59 0.00 37.19 5.69
5263 11057 0.951558 TCTTCAAAGAAAGGTGCGCC 59.048 50.000 8.71 8.71 30.73 6.53
5264 11058 1.873591 TCTCTTCAAAGAAAGGTGCGC 59.126 47.619 0.00 0.00 34.03 6.09
5265 11059 4.756084 ATTCTCTTCAAAGAAAGGTGCG 57.244 40.909 0.00 0.00 38.69 5.34
5266 11060 5.049405 TCGAATTCTCTTCAAAGAAAGGTGC 60.049 40.000 3.52 0.00 38.69 5.01
5267 11061 6.366630 GTCGAATTCTCTTCAAAGAAAGGTG 58.633 40.000 3.52 0.00 38.69 4.00
5268 11062 5.177696 CGTCGAATTCTCTTCAAAGAAAGGT 59.822 40.000 3.52 0.00 38.69 3.50
5269 11063 5.405571 TCGTCGAATTCTCTTCAAAGAAAGG 59.594 40.000 3.52 0.00 38.69 3.11
5270 11064 6.453643 TCGTCGAATTCTCTTCAAAGAAAG 57.546 37.500 3.52 0.00 38.69 2.62
5271 11065 6.838198 TTCGTCGAATTCTCTTCAAAGAAA 57.162 33.333 2.90 0.00 38.69 2.52
5272 11066 6.838198 TTTCGTCGAATTCTCTTCAAAGAA 57.162 33.333 8.78 0.00 39.49 2.52
5273 11067 6.128553 CCATTTCGTCGAATTCTCTTCAAAGA 60.129 38.462 8.78 0.00 0.00 2.52
5274 11068 6.017933 CCATTTCGTCGAATTCTCTTCAAAG 58.982 40.000 8.78 0.00 0.00 2.77
5275 11069 5.616866 GCCATTTCGTCGAATTCTCTTCAAA 60.617 40.000 8.78 0.00 0.00 2.69
5276 11070 4.142902 GCCATTTCGTCGAATTCTCTTCAA 60.143 41.667 8.78 0.00 0.00 2.69
5277 11071 3.370978 GCCATTTCGTCGAATTCTCTTCA 59.629 43.478 8.78 0.00 0.00 3.02
5278 11072 3.370978 TGCCATTTCGTCGAATTCTCTTC 59.629 43.478 8.78 0.00 0.00 2.87
5279 11073 3.125316 GTGCCATTTCGTCGAATTCTCTT 59.875 43.478 8.78 0.00 0.00 2.85
5280 11074 2.673368 GTGCCATTTCGTCGAATTCTCT 59.327 45.455 8.78 0.00 0.00 3.10
5281 11075 2.673368 AGTGCCATTTCGTCGAATTCTC 59.327 45.455 8.78 0.23 0.00 2.87
5282 11076 2.673368 GAGTGCCATTTCGTCGAATTCT 59.327 45.455 8.78 0.00 0.00 2.40
5283 11077 2.415168 TGAGTGCCATTTCGTCGAATTC 59.585 45.455 8.78 0.00 0.00 2.17
5284 11078 2.159627 GTGAGTGCCATTTCGTCGAATT 59.840 45.455 8.78 2.26 0.00 2.17
5285 11079 1.732259 GTGAGTGCCATTTCGTCGAAT 59.268 47.619 8.78 0.00 0.00 3.34
5286 11080 1.144969 GTGAGTGCCATTTCGTCGAA 58.855 50.000 2.90 2.90 0.00 3.71
5287 11081 0.317160 AGTGAGTGCCATTTCGTCGA 59.683 50.000 0.00 0.00 0.00 4.20
5288 11082 0.716108 GAGTGAGTGCCATTTCGTCG 59.284 55.000 0.00 0.00 0.00 5.12
5289 11083 1.079503 GGAGTGAGTGCCATTTCGTC 58.920 55.000 0.00 0.00 0.00 4.20
5290 11084 0.687354 AGGAGTGAGTGCCATTTCGT 59.313 50.000 0.00 0.00 0.00 3.85
5291 11085 1.813513 AAGGAGTGAGTGCCATTTCG 58.186 50.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.