Multiple sequence alignment - TraesCS2D01G343900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G343900 chr2D 100.000 3923 0 0 1 3923 440177995 440181917 0.000000e+00 7245
1 TraesCS2D01G343900 chr2D 97.203 286 8 0 3501 3786 583315107 583314822 5.890000e-133 484
2 TraesCS2D01G343900 chr2D 96.441 281 10 0 3501 3781 537416823 537416543 7.680000e-127 464
3 TraesCS2D01G343900 chr2D 93.836 292 17 1 3504 3794 477630374 477630083 4.650000e-119 438
4 TraesCS2D01G343900 chr2A 96.809 3478 66 20 1 3465 583595144 583598589 0.000000e+00 5766
5 TraesCS2D01G343900 chr2A 89.655 87 7 2 134 220 722125629 722125713 4.140000e-20 110
6 TraesCS2D01G343900 chr2B 97.631 2870 38 11 261 3121 517918181 517921029 0.000000e+00 4896
7 TraesCS2D01G343900 chr2B 94.366 355 11 5 3121 3470 517921310 517921660 1.600000e-148 536
8 TraesCS2D01G343900 chr2B 98.592 213 3 0 1 213 517917977 517918189 1.030000e-100 377
9 TraesCS2D01G343900 chr6D 97.500 280 7 0 3501 3780 364234183 364234462 2.740000e-131 479
10 TraesCS2D01G343900 chr6D 92.029 138 8 2 3782 3918 404937169 404937304 1.440000e-44 191
11 TraesCS2D01G343900 chr1D 96.820 283 9 0 3501 3783 135389919 135389637 1.280000e-129 473
12 TraesCS2D01G343900 chr1D 96.466 283 10 0 3501 3783 261844375 261844093 5.940000e-128 468
13 TraesCS2D01G343900 chr1D 96.466 283 10 0 3501 3783 462262023 462261741 5.940000e-128 468
14 TraesCS2D01G343900 chr4D 96.441 281 10 0 3501 3781 509391473 509391753 7.680000e-127 464
15 TraesCS2D01G343900 chr4D 89.655 145 13 1 3774 3918 492249525 492249667 2.410000e-42 183
16 TraesCS2D01G343900 chr3D 95.730 281 12 0 3501 3781 48963134 48963414 1.660000e-123 453
17 TraesCS2D01G343900 chr3D 91.304 138 9 2 3782 3918 399770213 399770348 6.690000e-43 185
18 TraesCS2D01G343900 chr5B 92.143 140 9 1 3782 3921 420791050 420790913 3.090000e-46 196
19 TraesCS2D01G343900 chr6B 92.086 139 7 3 3782 3918 322432752 322432888 4.000000e-45 193
20 TraesCS2D01G343900 chr6B 91.429 140 10 1 3782 3921 603148787 603148924 1.440000e-44 191
21 TraesCS2D01G343900 chr7D 92.029 138 8 2 3782 3918 492988738 492988603 1.440000e-44 191
22 TraesCS2D01G343900 chr4A 92.029 138 8 2 3782 3918 41647735 41647870 1.440000e-44 191
23 TraesCS2D01G343900 chr3A 91.304 138 9 2 3782 3918 379944203 379944068 6.690000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G343900 chr2D 440177995 440181917 3922 False 7245.000000 7245 100.000 1 3923 1 chr2D.!!$F1 3922
1 TraesCS2D01G343900 chr2A 583595144 583598589 3445 False 5766.000000 5766 96.809 1 3465 1 chr2A.!!$F1 3464
2 TraesCS2D01G343900 chr2B 517917977 517921660 3683 False 1936.333333 4896 96.863 1 3470 3 chr2B.!!$F1 3469

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 442 0.252197 AACCGAGGTCTATGGTTGGC 59.748 55.000 0.00 0.0 44.05 4.52 F
905 911 1.600636 CAAACAGCGGCTGGAGGAA 60.601 57.895 31.38 0.0 35.51 3.36 F
2437 2443 7.671819 CCTAATCTAAGATGAGGACCTGTATCA 59.328 40.741 0.00 0.0 0.00 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2450 2456 6.238842 GCATCGGTTGTAGTAATGTAGGAGTA 60.239 42.308 0.00 0.00 0.00 2.59 R
2496 2504 0.742990 TATGTTACTGGCAGCACGGC 60.743 55.000 15.89 1.31 41.67 5.68 R
3870 4176 0.035458 ACGTGCTAGAGCTGGCTTTT 59.965 50.000 7.36 0.00 42.66 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
214 215 6.539464 AGACTTTTGTGGACGTTATTGTAACA 59.461 34.615 0.00 0.00 0.00 2.41
215 216 7.227910 AGACTTTTGTGGACGTTATTGTAACAT 59.772 33.333 0.00 0.00 0.00 2.71
392 393 1.428448 GCGGATGCGCATATCTGTTA 58.572 50.000 27.48 0.00 36.14 2.41
441 442 0.252197 AACCGAGGTCTATGGTTGGC 59.748 55.000 0.00 0.00 44.05 4.52
905 911 1.600636 CAAACAGCGGCTGGAGGAA 60.601 57.895 31.38 0.00 35.51 3.36
2437 2443 7.671819 CCTAATCTAAGATGAGGACCTGTATCA 59.328 40.741 0.00 0.00 0.00 2.15
2448 2454 8.491045 TGAGGACCTGTATCATAATGATGTTA 57.509 34.615 0.00 0.00 37.70 2.41
2449 2455 8.588472 TGAGGACCTGTATCATAATGATGTTAG 58.412 37.037 0.00 0.00 37.70 2.34
2450 2456 8.497910 AGGACCTGTATCATAATGATGTTAGT 57.502 34.615 0.00 0.00 37.70 2.24
2451 2457 9.601810 AGGACCTGTATCATAATGATGTTAGTA 57.398 33.333 0.00 0.00 37.70 1.82
2452 2458 9.640963 GGACCTGTATCATAATGATGTTAGTAC 57.359 37.037 0.00 0.00 37.70 2.73
2496 2504 1.705256 AATGCACGGTGTACTGTACG 58.295 50.000 12.87 4.35 33.39 3.67
2505 2513 2.126228 TACTGTACGCCGTGCTGC 60.126 61.111 11.72 0.00 0.00 5.25
2524 2532 6.427853 GTGCTGCCAGTAACATATCATTATCA 59.572 38.462 0.00 0.00 0.00 2.15
2837 2848 4.087892 CAGCCACCACCTCTCCGG 62.088 72.222 0.00 0.00 39.35 5.14
2838 2849 4.316823 AGCCACCACCTCTCCGGA 62.317 66.667 2.93 2.93 36.31 5.14
2839 2850 3.319198 GCCACCACCTCTCCGGAA 61.319 66.667 5.23 0.00 36.31 4.30
2840 2851 2.663196 CCACCACCTCTCCGGAAC 59.337 66.667 5.23 0.00 36.31 3.62
2841 2852 2.214216 CCACCACCTCTCCGGAACA 61.214 63.158 5.23 0.00 36.31 3.18
2842 2853 1.293498 CACCACCTCTCCGGAACAG 59.707 63.158 5.23 4.14 36.31 3.16
2886 2897 2.598394 TGCTTCCCCTGCAACAGC 60.598 61.111 0.00 0.00 37.51 4.40
2988 2999 3.493350 CCATGTTCCACCTCTCCGATTAG 60.493 52.174 0.00 0.00 0.00 1.73
3000 3011 4.174009 TCTCCGATTAGCGTTCTTCTTTG 58.826 43.478 0.00 0.00 38.67 2.77
3001 3012 4.082408 TCTCCGATTAGCGTTCTTCTTTGA 60.082 41.667 0.00 0.00 38.67 2.69
3002 3013 4.755411 TCCGATTAGCGTTCTTCTTTGAT 58.245 39.130 0.00 0.00 38.67 2.57
3003 3014 5.175859 TCCGATTAGCGTTCTTCTTTGATT 58.824 37.500 0.00 0.00 38.67 2.57
3004 3015 5.291128 TCCGATTAGCGTTCTTCTTTGATTC 59.709 40.000 0.00 0.00 38.67 2.52
3005 3016 5.292101 CCGATTAGCGTTCTTCTTTGATTCT 59.708 40.000 0.00 0.00 38.67 2.40
3006 3017 6.183360 CCGATTAGCGTTCTTCTTTGATTCTT 60.183 38.462 0.00 0.00 38.67 2.52
3007 3018 7.237173 CGATTAGCGTTCTTCTTTGATTCTTT 58.763 34.615 0.00 0.00 34.64 2.52
3021 3032 4.380531 TGATTCTTTCTCACGCTCAAGTT 58.619 39.130 0.00 0.00 0.00 2.66
3022 3033 5.538118 TGATTCTTTCTCACGCTCAAGTTA 58.462 37.500 0.00 0.00 0.00 2.24
3023 3034 5.635280 TGATTCTTTCTCACGCTCAAGTTAG 59.365 40.000 0.00 0.00 0.00 2.34
3149 3447 3.958798 CCTCCTGAAGATTGCATGGAATT 59.041 43.478 14.12 0.00 0.00 2.17
3150 3448 5.135383 CCTCCTGAAGATTGCATGGAATTA 58.865 41.667 14.12 1.19 0.00 1.40
3151 3449 5.595542 CCTCCTGAAGATTGCATGGAATTAA 59.404 40.000 14.12 0.06 0.00 1.40
3152 3450 6.267014 CCTCCTGAAGATTGCATGGAATTAAT 59.733 38.462 14.12 3.56 0.00 1.40
3362 3663 1.817609 CACAAACGAACAAACGGACC 58.182 50.000 0.00 0.00 37.61 4.46
3363 3664 1.399089 CACAAACGAACAAACGGACCT 59.601 47.619 0.00 0.00 37.61 3.85
3470 3776 1.035932 ACAGTACGCGGCCATCTAGT 61.036 55.000 12.47 0.00 0.00 2.57
3471 3777 0.949397 CAGTACGCGGCCATCTAGTA 59.051 55.000 12.47 0.00 0.00 1.82
3472 3778 1.069159 CAGTACGCGGCCATCTAGTAG 60.069 57.143 12.47 0.00 0.00 2.57
3473 3779 0.240411 GTACGCGGCCATCTAGTAGG 59.760 60.000 12.47 0.00 0.00 3.18
3482 3788 2.243810 CCATCTAGTAGGCACTCCCTC 58.756 57.143 0.00 0.00 44.96 4.30
3483 3789 2.243810 CATCTAGTAGGCACTCCCTCC 58.756 57.143 0.00 0.00 44.96 4.30
3484 3790 0.183014 TCTAGTAGGCACTCCCTCCG 59.817 60.000 0.00 0.00 44.96 4.63
3485 3791 0.106619 CTAGTAGGCACTCCCTCCGT 60.107 60.000 0.00 0.00 44.96 4.69
3486 3792 0.333993 TAGTAGGCACTCCCTCCGTT 59.666 55.000 0.00 0.00 44.96 4.44
3487 3793 0.971447 AGTAGGCACTCCCTCCGTTC 60.971 60.000 0.00 0.00 44.96 3.95
3488 3794 2.050350 TAGGCACTCCCTCCGTTCG 61.050 63.158 0.00 0.00 44.96 3.95
3489 3795 4.452733 GGCACTCCCTCCGTTCGG 62.453 72.222 4.74 4.74 0.00 4.30
3490 3796 4.452733 GCACTCCCTCCGTTCGGG 62.453 72.222 11.37 2.52 43.38 5.14
3491 3797 2.995574 CACTCCCTCCGTTCGGGT 60.996 66.667 11.37 0.00 42.56 5.28
3492 3798 2.203743 ACTCCCTCCGTTCGGGTT 60.204 61.111 11.37 0.00 42.56 4.11
3493 3799 1.840198 ACTCCCTCCGTTCGGGTTT 60.840 57.895 11.37 0.00 42.56 3.27
3494 3800 0.542702 ACTCCCTCCGTTCGGGTTTA 60.543 55.000 11.37 0.00 42.56 2.01
3495 3801 0.828677 CTCCCTCCGTTCGGGTTTAT 59.171 55.000 11.37 0.00 42.56 1.40
3496 3802 1.208776 CTCCCTCCGTTCGGGTTTATT 59.791 52.381 11.37 0.00 42.56 1.40
3497 3803 2.431782 CTCCCTCCGTTCGGGTTTATTA 59.568 50.000 11.37 0.00 42.56 0.98
3498 3804 2.431782 TCCCTCCGTTCGGGTTTATTAG 59.568 50.000 11.37 0.00 42.56 1.73
3499 3805 2.484241 CCCTCCGTTCGGGTTTATTAGG 60.484 54.545 11.37 8.36 36.91 2.69
3500 3806 2.169144 CCTCCGTTCGGGTTTATTAGGT 59.831 50.000 11.37 0.00 37.00 3.08
3501 3807 3.384467 CCTCCGTTCGGGTTTATTAGGTA 59.616 47.826 11.37 0.00 37.00 3.08
3502 3808 4.363138 CTCCGTTCGGGTTTATTAGGTAC 58.637 47.826 11.37 0.00 37.00 3.34
3503 3809 3.132111 TCCGTTCGGGTTTATTAGGTACC 59.868 47.826 2.73 2.73 37.00 3.34
3504 3810 3.457234 CGTTCGGGTTTATTAGGTACCC 58.543 50.000 8.74 0.00 46.59 3.69
3513 3819 7.140522 GGTTTATTAGGTACCCACAATAGGA 57.859 40.000 8.74 1.47 0.00 2.94
3514 3820 7.222161 GGTTTATTAGGTACCCACAATAGGAG 58.778 42.308 8.74 0.00 0.00 3.69
3515 3821 7.147426 GGTTTATTAGGTACCCACAATAGGAGT 60.147 40.741 8.74 0.00 0.00 3.85
3516 3822 8.927411 GTTTATTAGGTACCCACAATAGGAGTA 58.073 37.037 8.74 0.00 0.00 2.59
3517 3823 9.504705 TTTATTAGGTACCCACAATAGGAGTAA 57.495 33.333 8.74 0.00 0.00 2.24
3518 3824 6.796785 TTAGGTACCCACAATAGGAGTAAC 57.203 41.667 8.74 0.00 0.00 2.50
3519 3825 3.703052 AGGTACCCACAATAGGAGTAACG 59.297 47.826 8.74 0.00 31.40 3.18
3520 3826 3.448660 GGTACCCACAATAGGAGTAACGT 59.551 47.826 0.00 0.00 0.00 3.99
3521 3827 4.644685 GGTACCCACAATAGGAGTAACGTA 59.355 45.833 0.00 0.00 0.00 3.57
3522 3828 4.996788 ACCCACAATAGGAGTAACGTAG 57.003 45.455 0.00 0.00 0.00 3.51
3523 3829 3.703052 ACCCACAATAGGAGTAACGTAGG 59.297 47.826 0.00 0.00 0.00 3.18
3524 3830 3.703052 CCCACAATAGGAGTAACGTAGGT 59.297 47.826 0.00 0.00 0.00 3.08
3525 3831 4.889409 CCCACAATAGGAGTAACGTAGGTA 59.111 45.833 0.00 0.00 0.00 3.08
3526 3832 5.360714 CCCACAATAGGAGTAACGTAGGTAA 59.639 44.000 0.00 0.00 0.00 2.85
3527 3833 6.041296 CCCACAATAGGAGTAACGTAGGTAAT 59.959 42.308 0.00 0.00 0.00 1.89
3528 3834 7.231317 CCCACAATAGGAGTAACGTAGGTAATA 59.769 40.741 0.00 0.00 0.00 0.98
3529 3835 8.632679 CCACAATAGGAGTAACGTAGGTAATAA 58.367 37.037 0.00 0.00 0.00 1.40
3530 3836 9.455847 CACAATAGGAGTAACGTAGGTAATAAC 57.544 37.037 0.00 0.00 0.00 1.89
3531 3837 9.189156 ACAATAGGAGTAACGTAGGTAATAACA 57.811 33.333 0.00 0.00 0.00 2.41
3534 3840 7.886629 AGGAGTAACGTAGGTAATAACATCA 57.113 36.000 0.00 0.00 0.00 3.07
3535 3841 7.710896 AGGAGTAACGTAGGTAATAACATCAC 58.289 38.462 0.00 0.00 0.00 3.06
3536 3842 7.340232 AGGAGTAACGTAGGTAATAACATCACA 59.660 37.037 0.00 0.00 0.00 3.58
3537 3843 7.433425 GGAGTAACGTAGGTAATAACATCACAC 59.567 40.741 0.00 0.00 0.00 3.82
3538 3844 7.829725 AGTAACGTAGGTAATAACATCACACA 58.170 34.615 0.00 0.00 0.00 3.72
3539 3845 8.472413 AGTAACGTAGGTAATAACATCACACAT 58.528 33.333 0.00 0.00 0.00 3.21
3540 3846 9.734620 GTAACGTAGGTAATAACATCACACATA 57.265 33.333 0.00 0.00 0.00 2.29
3542 3848 9.472361 AACGTAGGTAATAACATCACACATATC 57.528 33.333 0.00 0.00 0.00 1.63
3543 3849 8.857098 ACGTAGGTAATAACATCACACATATCT 58.143 33.333 0.00 0.00 0.00 1.98
3577 3883 7.634671 AGATGATGTGACAAGCAATAAATGA 57.365 32.000 0.00 0.00 0.00 2.57
3578 3884 8.058667 AGATGATGTGACAAGCAATAAATGAA 57.941 30.769 0.00 0.00 0.00 2.57
3579 3885 8.188799 AGATGATGTGACAAGCAATAAATGAAG 58.811 33.333 0.00 0.00 0.00 3.02
3580 3886 7.451501 TGATGTGACAAGCAATAAATGAAGA 57.548 32.000 0.00 0.00 0.00 2.87
3581 3887 7.884257 TGATGTGACAAGCAATAAATGAAGAA 58.116 30.769 0.00 0.00 0.00 2.52
3582 3888 8.358895 TGATGTGACAAGCAATAAATGAAGAAA 58.641 29.630 0.00 0.00 0.00 2.52
3583 3889 9.195411 GATGTGACAAGCAATAAATGAAGAAAA 57.805 29.630 0.00 0.00 0.00 2.29
3584 3890 8.939201 TGTGACAAGCAATAAATGAAGAAAAA 57.061 26.923 0.00 0.00 0.00 1.94
3585 3891 9.033481 TGTGACAAGCAATAAATGAAGAAAAAG 57.967 29.630 0.00 0.00 0.00 2.27
3586 3892 9.248291 GTGACAAGCAATAAATGAAGAAAAAGA 57.752 29.630 0.00 0.00 0.00 2.52
3587 3893 9.467258 TGACAAGCAATAAATGAAGAAAAAGAG 57.533 29.630 0.00 0.00 0.00 2.85
3588 3894 8.822652 ACAAGCAATAAATGAAGAAAAAGAGG 57.177 30.769 0.00 0.00 0.00 3.69
3589 3895 7.386025 ACAAGCAATAAATGAAGAAAAAGAGGC 59.614 33.333 0.00 0.00 0.00 4.70
3590 3896 6.996509 AGCAATAAATGAAGAAAAAGAGGCA 58.003 32.000 0.00 0.00 0.00 4.75
3591 3897 7.618137 AGCAATAAATGAAGAAAAAGAGGCAT 58.382 30.769 0.00 0.00 0.00 4.40
3592 3898 7.548075 AGCAATAAATGAAGAAAAAGAGGCATG 59.452 33.333 0.00 0.00 0.00 4.06
3593 3899 7.332678 GCAATAAATGAAGAAAAAGAGGCATGT 59.667 33.333 0.00 0.00 0.00 3.21
3594 3900 8.653338 CAATAAATGAAGAAAAAGAGGCATGTG 58.347 33.333 0.00 0.00 0.00 3.21
3595 3901 4.796038 ATGAAGAAAAAGAGGCATGTGG 57.204 40.909 0.00 0.00 0.00 4.17
3596 3902 3.565307 TGAAGAAAAAGAGGCATGTGGT 58.435 40.909 0.00 0.00 0.00 4.16
3597 3903 4.724399 TGAAGAAAAAGAGGCATGTGGTA 58.276 39.130 0.00 0.00 0.00 3.25
3598 3904 5.136828 TGAAGAAAAAGAGGCATGTGGTAA 58.863 37.500 0.00 0.00 0.00 2.85
3599 3905 5.009610 TGAAGAAAAAGAGGCATGTGGTAAC 59.990 40.000 0.00 0.00 0.00 2.50
3624 3930 9.629878 ACATAGCTAGTTACTACTAATGTGAGT 57.370 33.333 0.00 0.00 35.78 3.41
3645 3951 7.610865 TGAGTAACATCACACATATCAAGACA 58.389 34.615 0.00 0.00 0.00 3.41
3646 3952 8.093927 TGAGTAACATCACACATATCAAGACAA 58.906 33.333 0.00 0.00 0.00 3.18
3647 3953 8.484641 AGTAACATCACACATATCAAGACAAG 57.515 34.615 0.00 0.00 0.00 3.16
3648 3954 8.314021 AGTAACATCACACATATCAAGACAAGA 58.686 33.333 0.00 0.00 0.00 3.02
3649 3955 9.102757 GTAACATCACACATATCAAGACAAGAT 57.897 33.333 0.00 0.00 0.00 2.40
3650 3956 7.549615 ACATCACACATATCAAGACAAGATG 57.450 36.000 0.00 0.00 36.24 2.90
3651 3957 7.333323 ACATCACACATATCAAGACAAGATGA 58.667 34.615 0.00 0.00 34.73 2.92
3652 3958 7.494952 ACATCACACATATCAAGACAAGATGAG 59.505 37.037 0.00 0.00 34.73 2.90
3653 3959 6.939622 TCACACATATCAAGACAAGATGAGT 58.060 36.000 0.00 0.00 0.00 3.41
3654 3960 7.038048 TCACACATATCAAGACAAGATGAGTC 58.962 38.462 0.00 0.00 36.26 3.36
3656 3962 8.193438 CACACATATCAAGACAAGATGAGTCTA 58.807 37.037 0.00 0.00 45.11 2.59
3657 3963 8.922237 ACACATATCAAGACAAGATGAGTCTAT 58.078 33.333 0.00 0.00 45.11 1.98
3662 3968 7.962995 TCAAGACAAGATGAGTCTATAACCT 57.037 36.000 0.00 0.00 45.11 3.50
3663 3969 9.647918 ATCAAGACAAGATGAGTCTATAACCTA 57.352 33.333 0.00 0.00 45.11 3.08
3664 3970 9.475620 TCAAGACAAGATGAGTCTATAACCTAA 57.524 33.333 0.00 0.00 45.11 2.69
3690 3996 7.575414 AAATGAAGTGTTGTATGTTACCACA 57.425 32.000 0.00 0.00 37.31 4.17
3698 4004 7.987750 TGTTGTATGTTACCACACATATGTT 57.012 32.000 5.37 0.00 40.85 2.71
3700 4006 8.937884 TGTTGTATGTTACCACACATATGTTAC 58.062 33.333 5.37 3.80 40.85 2.50
3701 4007 9.158233 GTTGTATGTTACCACACATATGTTACT 57.842 33.333 5.37 0.00 40.85 2.24
3702 4008 8.936070 TGTATGTTACCACACATATGTTACTC 57.064 34.615 5.37 0.00 40.85 2.59
3703 4009 7.982919 TGTATGTTACCACACATATGTTACTCC 59.017 37.037 5.37 0.00 40.85 3.85
3704 4010 5.736813 TGTTACCACACATATGTTACTCCC 58.263 41.667 5.37 0.00 36.72 4.30
3705 4011 3.926058 ACCACACATATGTTACTCCCC 57.074 47.619 5.37 0.00 36.72 4.81
3706 4012 3.186283 ACCACACATATGTTACTCCCCA 58.814 45.455 5.37 0.00 36.72 4.96
3707 4013 3.054655 ACCACACATATGTTACTCCCCAC 60.055 47.826 5.37 0.00 36.72 4.61
3708 4014 3.199946 CCACACATATGTTACTCCCCACT 59.800 47.826 5.37 0.00 36.72 4.00
3709 4015 4.407621 CCACACATATGTTACTCCCCACTA 59.592 45.833 5.37 0.00 36.72 2.74
3710 4016 5.071788 CCACACATATGTTACTCCCCACTAT 59.928 44.000 5.37 0.00 36.72 2.12
3711 4017 6.269077 CCACACATATGTTACTCCCCACTATA 59.731 42.308 5.37 0.00 36.72 1.31
3712 4018 7.378966 CACACATATGTTACTCCCCACTATAG 58.621 42.308 5.37 0.00 36.72 1.31
3713 4019 7.232737 CACACATATGTTACTCCCCACTATAGA 59.767 40.741 5.37 0.00 36.72 1.98
3714 4020 7.451877 ACACATATGTTACTCCCCACTATAGAG 59.548 40.741 5.37 0.00 34.46 2.43
3715 4021 6.954684 ACATATGTTACTCCCCACTATAGAGG 59.045 42.308 6.78 8.10 31.70 3.69
3716 4022 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
3717 4023 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
3718 4024 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
3719 4025 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
3720 4026 6.621098 TGTTACTCCCCACTATAGAGGTAGTA 59.379 42.308 17.42 17.42 33.29 1.82
3721 4027 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
3722 4028 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
3723 4029 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
3724 4030 6.104392 ACTCCCCACTATAGAGGTAGTAACAT 59.896 42.308 14.29 0.00 33.29 2.71
3725 4031 7.296628 ACTCCCCACTATAGAGGTAGTAACATA 59.703 40.741 14.29 0.00 33.29 2.29
3726 4032 7.696981 TCCCCACTATAGAGGTAGTAACATAG 58.303 42.308 14.29 0.00 33.29 2.23
3727 4033 7.518653 TCCCCACTATAGAGGTAGTAACATAGA 59.481 40.741 14.29 0.00 33.29 1.98
3728 4034 7.830201 CCCCACTATAGAGGTAGTAACATAGAG 59.170 44.444 14.29 0.00 33.29 2.43
3729 4035 8.384718 CCCACTATAGAGGTAGTAACATAGAGT 58.615 40.741 14.29 0.00 33.29 3.24
3739 4045 9.352191 AGGTAGTAACATAGAGTAGTAACATGG 57.648 37.037 0.00 0.00 0.00 3.66
3740 4046 8.574737 GGTAGTAACATAGAGTAGTAACATGGG 58.425 40.741 0.00 0.00 0.00 4.00
3741 4047 7.052142 AGTAACATAGAGTAGTAACATGGGC 57.948 40.000 0.00 0.00 0.00 5.36
3742 4048 5.950544 AACATAGAGTAGTAACATGGGCA 57.049 39.130 0.00 0.00 0.00 5.36
3743 4049 6.500589 AACATAGAGTAGTAACATGGGCAT 57.499 37.500 0.00 0.00 0.00 4.40
3744 4050 5.858381 ACATAGAGTAGTAACATGGGCATG 58.142 41.667 0.00 0.00 44.15 4.06
3757 4063 5.929697 CATGGGCATGTTACTACACTATG 57.070 43.478 0.00 0.00 37.03 2.23
3758 4064 5.368145 CATGGGCATGTTACTACACTATGT 58.632 41.667 0.00 0.00 37.03 2.29
3759 4065 5.429681 TGGGCATGTTACTACACTATGTT 57.570 39.130 0.00 0.00 37.03 2.71
3760 4066 6.547930 TGGGCATGTTACTACACTATGTTA 57.452 37.500 0.00 0.00 37.03 2.41
3761 4067 6.342906 TGGGCATGTTACTACACTATGTTAC 58.657 40.000 0.00 0.00 37.03 2.50
3762 4068 6.155565 TGGGCATGTTACTACACTATGTTACT 59.844 38.462 0.00 0.00 37.03 2.24
3763 4069 7.342541 TGGGCATGTTACTACACTATGTTACTA 59.657 37.037 0.00 0.00 37.03 1.82
3764 4070 7.650903 GGGCATGTTACTACACTATGTTACTAC 59.349 40.741 0.00 0.00 37.03 2.73
3765 4071 7.650903 GGCATGTTACTACACTATGTTACTACC 59.349 40.741 0.00 0.00 37.03 3.18
3766 4072 7.650903 GCATGTTACTACACTATGTTACTACCC 59.349 40.741 0.00 0.00 37.03 3.69
3767 4073 8.689061 CATGTTACTACACTATGTTACTACCCA 58.311 37.037 0.00 0.00 37.03 4.51
3768 4074 8.827832 TGTTACTACACTATGTTACTACCCAT 57.172 34.615 0.00 0.00 0.00 4.00
3769 4075 9.258629 TGTTACTACACTATGTTACTACCCATT 57.741 33.333 0.00 0.00 0.00 3.16
3770 4076 9.525409 GTTACTACACTATGTTACTACCCATTG 57.475 37.037 0.00 0.00 0.00 2.82
3771 4077 7.729124 ACTACACTATGTTACTACCCATTGT 57.271 36.000 0.00 0.00 0.00 2.71
3772 4078 7.553334 ACTACACTATGTTACTACCCATTGTG 58.447 38.462 10.97 10.97 44.70 3.33
3773 4079 5.741011 ACACTATGTTACTACCCATTGTGG 58.259 41.667 15.06 0.00 44.00 4.17
3774 4080 4.574828 CACTATGTTACTACCCATTGTGGC 59.425 45.833 0.00 0.00 39.51 5.01
3775 4081 4.473559 ACTATGTTACTACCCATTGTGGCT 59.526 41.667 0.00 0.00 35.79 4.75
3776 4082 5.664006 ACTATGTTACTACCCATTGTGGCTA 59.336 40.000 0.00 0.00 35.79 3.93
3777 4083 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
3778 4084 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
3779 4085 4.081309 TGTTACTACCCATTGTGGCTAGTC 60.081 45.833 7.13 0.00 35.79 2.59
3780 4086 2.834113 ACTACCCATTGTGGCTAGTCT 58.166 47.619 0.00 0.00 35.79 3.24
3781 4087 3.990369 ACTACCCATTGTGGCTAGTCTA 58.010 45.455 0.00 0.00 35.79 2.59
3782 4088 4.359105 ACTACCCATTGTGGCTAGTCTAA 58.641 43.478 0.00 0.00 35.79 2.10
3783 4089 4.969359 ACTACCCATTGTGGCTAGTCTAAT 59.031 41.667 0.00 0.00 35.79 1.73
3784 4090 6.141083 ACTACCCATTGTGGCTAGTCTAATA 58.859 40.000 0.00 0.00 35.79 0.98
3785 4091 5.552870 ACCCATTGTGGCTAGTCTAATAG 57.447 43.478 0.00 0.00 35.79 1.73
3786 4092 4.348168 ACCCATTGTGGCTAGTCTAATAGG 59.652 45.833 0.00 2.22 35.79 2.57
3787 4093 4.263068 CCCATTGTGGCTAGTCTAATAGGG 60.263 50.000 0.00 6.88 35.79 3.53
3788 4094 4.593206 CCATTGTGGCTAGTCTAATAGGGA 59.407 45.833 0.00 0.00 0.00 4.20
3789 4095 5.249393 CCATTGTGGCTAGTCTAATAGGGAT 59.751 44.000 0.00 0.00 0.00 3.85
3790 4096 5.808366 TTGTGGCTAGTCTAATAGGGATG 57.192 43.478 0.00 0.00 0.00 3.51
3791 4097 5.074746 TGTGGCTAGTCTAATAGGGATGA 57.925 43.478 0.00 0.00 0.00 2.92
3792 4098 5.080337 TGTGGCTAGTCTAATAGGGATGAG 58.920 45.833 0.00 0.00 0.00 2.90
3793 4099 5.081032 GTGGCTAGTCTAATAGGGATGAGT 58.919 45.833 0.00 0.00 0.00 3.41
3794 4100 5.540719 GTGGCTAGTCTAATAGGGATGAGTT 59.459 44.000 0.00 0.00 0.00 3.01
3795 4101 6.720288 GTGGCTAGTCTAATAGGGATGAGTTA 59.280 42.308 0.00 0.00 0.00 2.24
3796 4102 6.948886 TGGCTAGTCTAATAGGGATGAGTTAG 59.051 42.308 0.00 0.00 0.00 2.34
3797 4103 6.127563 GGCTAGTCTAATAGGGATGAGTTAGC 60.128 46.154 0.00 0.00 32.57 3.09
3798 4104 5.968528 AGTCTAATAGGGATGAGTTAGCG 57.031 43.478 0.00 0.00 0.00 4.26
3799 4105 4.767928 AGTCTAATAGGGATGAGTTAGCGG 59.232 45.833 0.00 0.00 0.00 5.52
3800 4106 4.082136 GTCTAATAGGGATGAGTTAGCGGG 60.082 50.000 0.00 0.00 0.00 6.13
3801 4107 0.977395 ATAGGGATGAGTTAGCGGGC 59.023 55.000 0.00 0.00 0.00 6.13
3802 4108 0.105658 TAGGGATGAGTTAGCGGGCT 60.106 55.000 0.00 0.00 0.00 5.19
3803 4109 0.105658 AGGGATGAGTTAGCGGGCTA 60.106 55.000 0.00 0.00 0.00 3.93
3804 4110 0.977395 GGGATGAGTTAGCGGGCTAT 59.023 55.000 0.55 0.00 0.00 2.97
3805 4111 2.176889 GGGATGAGTTAGCGGGCTATA 58.823 52.381 0.55 0.00 0.00 1.31
3806 4112 2.565834 GGGATGAGTTAGCGGGCTATAA 59.434 50.000 0.55 0.00 0.00 0.98
3807 4113 3.007614 GGGATGAGTTAGCGGGCTATAAA 59.992 47.826 0.55 0.00 0.00 1.40
3808 4114 4.504340 GGGATGAGTTAGCGGGCTATAAAA 60.504 45.833 0.55 0.00 0.00 1.52
3809 4115 5.061179 GGATGAGTTAGCGGGCTATAAAAA 58.939 41.667 0.55 0.00 0.00 1.94
3841 4147 7.676683 AGTATATTTCTGCTTAGTTGGAGGA 57.323 36.000 0.00 0.00 0.00 3.71
3842 4148 8.090788 AGTATATTTCTGCTTAGTTGGAGGAA 57.909 34.615 0.00 0.00 0.00 3.36
3843 4149 8.548877 AGTATATTTCTGCTTAGTTGGAGGAAA 58.451 33.333 0.00 0.00 0.00 3.13
3844 4150 7.872113 ATATTTCTGCTTAGTTGGAGGAAAG 57.128 36.000 0.00 0.00 0.00 2.62
3845 4151 4.974645 TTCTGCTTAGTTGGAGGAAAGA 57.025 40.909 0.00 0.00 0.00 2.52
3846 4152 4.543590 TCTGCTTAGTTGGAGGAAAGAG 57.456 45.455 0.00 0.00 0.00 2.85
3847 4153 4.160329 TCTGCTTAGTTGGAGGAAAGAGA 58.840 43.478 0.00 0.00 0.00 3.10
3848 4154 4.593206 TCTGCTTAGTTGGAGGAAAGAGAA 59.407 41.667 0.00 0.00 0.00 2.87
3849 4155 5.071788 TCTGCTTAGTTGGAGGAAAGAGAAA 59.928 40.000 0.00 0.00 0.00 2.52
3850 4156 5.690865 TGCTTAGTTGGAGGAAAGAGAAAA 58.309 37.500 0.00 0.00 0.00 2.29
3851 4157 5.765182 TGCTTAGTTGGAGGAAAGAGAAAAG 59.235 40.000 0.00 0.00 0.00 2.27
3852 4158 5.182190 GCTTAGTTGGAGGAAAGAGAAAAGG 59.818 44.000 0.00 0.00 0.00 3.11
3853 4159 4.797912 AGTTGGAGGAAAGAGAAAAGGT 57.202 40.909 0.00 0.00 0.00 3.50
3854 4160 5.906772 AGTTGGAGGAAAGAGAAAAGGTA 57.093 39.130 0.00 0.00 0.00 3.08
3855 4161 6.262056 AGTTGGAGGAAAGAGAAAAGGTAA 57.738 37.500 0.00 0.00 0.00 2.85
3856 4162 6.299922 AGTTGGAGGAAAGAGAAAAGGTAAG 58.700 40.000 0.00 0.00 0.00 2.34
3857 4163 4.652822 TGGAGGAAAGAGAAAAGGTAAGC 58.347 43.478 0.00 0.00 0.00 3.09
3858 4164 3.685272 GGAGGAAAGAGAAAAGGTAAGCG 59.315 47.826 0.00 0.00 0.00 4.68
3859 4165 3.676093 AGGAAAGAGAAAAGGTAAGCGG 58.324 45.455 0.00 0.00 0.00 5.52
3860 4166 2.747989 GGAAAGAGAAAAGGTAAGCGGG 59.252 50.000 0.00 0.00 0.00 6.13
3861 4167 1.822506 AAGAGAAAAGGTAAGCGGGC 58.177 50.000 0.00 0.00 0.00 6.13
3862 4168 0.984995 AGAGAAAAGGTAAGCGGGCT 59.015 50.000 0.00 0.00 0.00 5.19
3863 4169 1.066071 AGAGAAAAGGTAAGCGGGCTC 60.066 52.381 0.00 0.00 0.00 4.70
3864 4170 0.984995 AGAAAAGGTAAGCGGGCTCT 59.015 50.000 0.00 0.00 0.00 4.09
3865 4171 1.351350 AGAAAAGGTAAGCGGGCTCTT 59.649 47.619 0.00 0.00 0.00 2.85
3866 4172 1.738350 GAAAAGGTAAGCGGGCTCTTC 59.262 52.381 0.00 0.00 0.00 2.87
3867 4173 0.690762 AAAGGTAAGCGGGCTCTTCA 59.309 50.000 0.00 0.00 0.00 3.02
3868 4174 0.912486 AAGGTAAGCGGGCTCTTCAT 59.088 50.000 0.00 0.00 0.00 2.57
3869 4175 0.179000 AGGTAAGCGGGCTCTTCATG 59.821 55.000 0.00 0.00 0.00 3.07
3870 4176 0.178068 GGTAAGCGGGCTCTTCATGA 59.822 55.000 0.00 0.00 0.00 3.07
3871 4177 1.406887 GGTAAGCGGGCTCTTCATGAA 60.407 52.381 8.12 8.12 0.00 2.57
3872 4178 2.356135 GTAAGCGGGCTCTTCATGAAA 58.644 47.619 9.88 0.26 0.00 2.69
3873 4179 1.909700 AAGCGGGCTCTTCATGAAAA 58.090 45.000 9.88 0.00 0.00 2.29
3874 4180 1.457346 AGCGGGCTCTTCATGAAAAG 58.543 50.000 9.88 7.04 0.00 2.27
3875 4181 0.179153 GCGGGCTCTTCATGAAAAGC 60.179 55.000 22.99 22.99 0.00 3.51
3879 4185 2.274920 GCTCTTCATGAAAAGCCAGC 57.725 50.000 20.97 13.07 0.00 4.85
3880 4186 1.817447 GCTCTTCATGAAAAGCCAGCT 59.183 47.619 20.97 0.00 0.00 4.24
3881 4187 2.159407 GCTCTTCATGAAAAGCCAGCTC 60.159 50.000 20.97 0.00 0.00 4.09
3882 4188 3.345414 CTCTTCATGAAAAGCCAGCTCT 58.655 45.455 9.88 0.00 0.00 4.09
3883 4189 4.511527 CTCTTCATGAAAAGCCAGCTCTA 58.488 43.478 9.88 0.00 0.00 2.43
3884 4190 4.511527 TCTTCATGAAAAGCCAGCTCTAG 58.488 43.478 9.88 0.00 0.00 2.43
3885 4191 2.636830 TCATGAAAAGCCAGCTCTAGC 58.363 47.619 0.00 0.00 42.49 3.42
3886 4192 2.026915 TCATGAAAAGCCAGCTCTAGCA 60.027 45.455 4.54 0.00 45.16 3.49
3887 4193 1.813513 TGAAAAGCCAGCTCTAGCAC 58.186 50.000 4.54 0.00 45.16 4.40
3888 4194 0.723981 GAAAAGCCAGCTCTAGCACG 59.276 55.000 4.54 0.00 45.16 5.34
3889 4195 0.035458 AAAAGCCAGCTCTAGCACGT 59.965 50.000 4.54 0.00 45.16 4.49
3890 4196 0.671781 AAAGCCAGCTCTAGCACGTG 60.672 55.000 12.28 12.28 45.16 4.49
3891 4197 3.191539 GCCAGCTCTAGCACGTGC 61.192 66.667 32.79 32.79 45.16 5.34
3907 4213 3.631453 TGCTCCTAGGCACTTTGTG 57.369 52.632 2.96 0.00 41.75 3.33
3908 4214 1.055849 TGCTCCTAGGCACTTTGTGA 58.944 50.000 2.96 0.00 41.75 3.58
3909 4215 1.002430 TGCTCCTAGGCACTTTGTGAG 59.998 52.381 2.96 0.00 41.75 3.51
3910 4216 1.276421 GCTCCTAGGCACTTTGTGAGA 59.724 52.381 2.96 0.00 41.75 3.27
3911 4217 2.289694 GCTCCTAGGCACTTTGTGAGAA 60.290 50.000 2.96 0.00 41.75 2.87
3912 4218 3.620966 GCTCCTAGGCACTTTGTGAGAAT 60.621 47.826 2.96 0.00 41.75 2.40
3913 4219 3.937706 CTCCTAGGCACTTTGTGAGAATG 59.062 47.826 2.96 0.00 41.75 2.67
3914 4220 3.582647 TCCTAGGCACTTTGTGAGAATGA 59.417 43.478 2.96 0.00 41.75 2.57
3915 4221 4.041567 TCCTAGGCACTTTGTGAGAATGAA 59.958 41.667 2.96 0.00 41.75 2.57
3916 4222 4.761739 CCTAGGCACTTTGTGAGAATGAAA 59.238 41.667 0.00 0.00 41.75 2.69
3917 4223 4.843220 AGGCACTTTGTGAGAATGAAAG 57.157 40.909 1.52 0.00 35.23 2.62
3918 4224 4.464008 AGGCACTTTGTGAGAATGAAAGA 58.536 39.130 1.52 0.00 35.23 2.52
3919 4225 5.075493 AGGCACTTTGTGAGAATGAAAGAT 58.925 37.500 1.52 0.00 35.23 2.40
3920 4226 5.048224 AGGCACTTTGTGAGAATGAAAGATG 60.048 40.000 1.52 0.00 35.23 2.90
3921 4227 5.048504 GGCACTTTGTGAGAATGAAAGATGA 60.049 40.000 1.52 0.00 35.23 2.92
3922 4228 6.084925 GCACTTTGTGAGAATGAAAGATGAG 58.915 40.000 1.52 0.00 35.23 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.382832 CCGTCGGCCTCCTTGTCT 61.383 66.667 0.00 0.00 0.00 3.41
392 393 9.675464 TTCGGATTTTGTTATTTAGGTCAGTAT 57.325 29.630 0.00 0.00 0.00 2.12
441 442 2.332654 GGGTAGTGCAAGGCCAACG 61.333 63.158 5.01 0.00 0.00 4.10
853 859 0.871057 GTGCTTCTGTTCTGTGAGCC 59.129 55.000 0.00 0.00 0.00 4.70
905 911 1.557269 AATGGGTCGCTGCTTCCTCT 61.557 55.000 0.00 0.00 0.00 3.69
2448 2454 6.418101 TCGGTTGTAGTAATGTAGGAGTACT 58.582 40.000 0.00 0.00 38.91 2.73
2449 2455 6.683974 TCGGTTGTAGTAATGTAGGAGTAC 57.316 41.667 0.00 0.00 0.00 2.73
2450 2456 6.238842 GCATCGGTTGTAGTAATGTAGGAGTA 60.239 42.308 0.00 0.00 0.00 2.59
2451 2457 5.451520 GCATCGGTTGTAGTAATGTAGGAGT 60.452 44.000 0.00 0.00 0.00 3.85
2452 2458 4.982916 GCATCGGTTGTAGTAATGTAGGAG 59.017 45.833 0.00 0.00 0.00 3.69
2453 2459 4.403113 TGCATCGGTTGTAGTAATGTAGGA 59.597 41.667 0.00 0.00 0.00 2.94
2454 2460 4.689071 TGCATCGGTTGTAGTAATGTAGG 58.311 43.478 0.00 0.00 0.00 3.18
2496 2504 0.742990 TATGTTACTGGCAGCACGGC 60.743 55.000 15.89 1.31 41.67 5.68
2505 2513 9.716531 ATGTCTGTGATAATGATATGTTACTGG 57.283 33.333 0.00 0.00 0.00 4.00
2577 2588 9.378551 AGAAGAACATGTTTCGCATTAAGTATA 57.621 29.630 13.36 0.00 35.19 1.47
2592 2603 2.628178 TCTGACACGGAGAAGAACATGT 59.372 45.455 0.00 0.00 0.00 3.21
2806 2817 0.904865 TGGCTGATCGTCTTCACCCT 60.905 55.000 0.00 0.00 0.00 4.34
2837 2848 2.198304 ATTGCTCCCGGTCCCTGTTC 62.198 60.000 0.00 0.00 0.00 3.18
2838 2849 2.231380 ATTGCTCCCGGTCCCTGTT 61.231 57.895 0.00 0.00 0.00 3.16
2839 2850 2.610859 ATTGCTCCCGGTCCCTGT 60.611 61.111 0.00 0.00 0.00 4.00
2840 2851 2.124570 CATTGCTCCCGGTCCCTG 60.125 66.667 0.00 0.00 0.00 4.45
2841 2852 4.115199 GCATTGCTCCCGGTCCCT 62.115 66.667 0.00 0.00 0.00 4.20
2886 2897 1.349627 GCCGCTGATGATGTTGTCG 59.650 57.895 0.00 0.00 0.00 4.35
2988 2999 5.848559 GTGAGAAAGAATCAAAGAAGAACGC 59.151 40.000 0.00 0.00 0.00 4.84
3000 3011 4.999751 AACTTGAGCGTGAGAAAGAATC 57.000 40.909 0.00 0.00 0.00 2.52
3001 3012 5.542779 ACTAACTTGAGCGTGAGAAAGAAT 58.457 37.500 0.00 0.00 0.00 2.40
3002 3013 4.945246 ACTAACTTGAGCGTGAGAAAGAA 58.055 39.130 0.00 0.00 0.00 2.52
3003 3014 4.585955 ACTAACTTGAGCGTGAGAAAGA 57.414 40.909 0.00 0.00 0.00 2.52
3004 3015 6.034044 GTGATACTAACTTGAGCGTGAGAAAG 59.966 42.308 0.00 0.00 0.00 2.62
3005 3016 5.862323 GTGATACTAACTTGAGCGTGAGAAA 59.138 40.000 0.00 0.00 0.00 2.52
3006 3017 5.048294 TGTGATACTAACTTGAGCGTGAGAA 60.048 40.000 0.00 0.00 0.00 2.87
3007 3018 4.457949 TGTGATACTAACTTGAGCGTGAGA 59.542 41.667 0.00 0.00 0.00 3.27
3021 3032 6.317140 ACGTTAATCGGAGAGTTGTGATACTA 59.683 38.462 0.00 0.00 43.63 1.82
3022 3033 5.125097 ACGTTAATCGGAGAGTTGTGATACT 59.875 40.000 0.00 0.00 43.63 2.12
3023 3034 5.338365 ACGTTAATCGGAGAGTTGTGATAC 58.662 41.667 0.00 0.00 43.63 2.24
3113 3130 2.697229 TCAGGAGGCATGTCAGACTATG 59.303 50.000 0.00 5.51 0.00 2.23
3149 3447 2.289382 TGCTTGAGGTTGTCTGCGATTA 60.289 45.455 0.00 0.00 0.00 1.75
3150 3448 1.160137 GCTTGAGGTTGTCTGCGATT 58.840 50.000 0.00 0.00 0.00 3.34
3151 3449 0.035317 TGCTTGAGGTTGTCTGCGAT 59.965 50.000 0.00 0.00 0.00 4.58
3152 3450 0.880278 GTGCTTGAGGTTGTCTGCGA 60.880 55.000 0.00 0.00 0.00 5.10
3362 3663 1.933247 CTGGAAAAGCCTAGCGAGAG 58.067 55.000 0.00 0.00 37.63 3.20
3470 3776 2.050350 CGAACGGAGGGAGTGCCTA 61.050 63.158 1.77 0.00 0.00 3.93
3471 3777 3.382832 CGAACGGAGGGAGTGCCT 61.383 66.667 1.18 1.18 0.00 4.75
3472 3778 4.452733 CCGAACGGAGGGAGTGCC 62.453 72.222 7.53 0.00 37.50 5.01
3479 3785 2.169144 ACCTAATAAACCCGAACGGAGG 59.831 50.000 15.07 12.97 37.50 4.30
3480 3786 3.531934 ACCTAATAAACCCGAACGGAG 57.468 47.619 15.07 7.41 37.50 4.63
3481 3787 3.132111 GGTACCTAATAAACCCGAACGGA 59.868 47.826 15.07 0.00 37.50 4.69
3482 3788 3.457234 GGTACCTAATAAACCCGAACGG 58.543 50.000 4.06 6.25 37.81 4.44
3499 3805 4.725790 ACGTTACTCCTATTGTGGGTAC 57.274 45.455 0.00 0.00 0.00 3.34
3500 3806 4.889409 CCTACGTTACTCCTATTGTGGGTA 59.111 45.833 0.00 0.00 0.00 3.69
3501 3807 3.703052 CCTACGTTACTCCTATTGTGGGT 59.297 47.826 0.00 0.00 0.00 4.51
3502 3808 3.703052 ACCTACGTTACTCCTATTGTGGG 59.297 47.826 0.00 0.00 34.54 4.61
3503 3809 4.996788 ACCTACGTTACTCCTATTGTGG 57.003 45.455 0.00 0.00 0.00 4.17
3504 3810 9.455847 GTTATTACCTACGTTACTCCTATTGTG 57.544 37.037 0.00 0.00 0.00 3.33
3505 3811 9.189156 TGTTATTACCTACGTTACTCCTATTGT 57.811 33.333 0.00 0.00 0.00 2.71
3508 3814 9.578576 TGATGTTATTACCTACGTTACTCCTAT 57.421 33.333 0.00 0.00 0.00 2.57
3509 3815 8.840321 GTGATGTTATTACCTACGTTACTCCTA 58.160 37.037 0.00 0.00 0.00 2.94
3510 3816 7.340232 TGTGATGTTATTACCTACGTTACTCCT 59.660 37.037 0.00 0.00 0.00 3.69
3511 3817 7.433425 GTGTGATGTTATTACCTACGTTACTCC 59.567 40.741 0.00 0.00 0.00 3.85
3512 3818 7.970061 TGTGTGATGTTATTACCTACGTTACTC 59.030 37.037 0.00 0.00 0.00 2.59
3513 3819 7.829725 TGTGTGATGTTATTACCTACGTTACT 58.170 34.615 0.00 0.00 0.00 2.24
3514 3820 8.638685 ATGTGTGATGTTATTACCTACGTTAC 57.361 34.615 0.00 0.00 0.00 2.50
3516 3822 9.472361 GATATGTGTGATGTTATTACCTACGTT 57.528 33.333 0.00 0.00 0.00 3.99
3517 3823 8.857098 AGATATGTGTGATGTTATTACCTACGT 58.143 33.333 0.00 0.00 0.00 3.57
3551 3857 9.346005 TCATTTATTGCTTGTCACATCATCTAT 57.654 29.630 0.00 0.00 0.00 1.98
3552 3858 8.735692 TCATTTATTGCTTGTCACATCATCTA 57.264 30.769 0.00 0.00 0.00 1.98
3553 3859 7.634671 TCATTTATTGCTTGTCACATCATCT 57.365 32.000 0.00 0.00 0.00 2.90
3554 3860 8.186163 TCTTCATTTATTGCTTGTCACATCATC 58.814 33.333 0.00 0.00 0.00 2.92
3555 3861 8.058667 TCTTCATTTATTGCTTGTCACATCAT 57.941 30.769 0.00 0.00 0.00 2.45
3556 3862 7.451501 TCTTCATTTATTGCTTGTCACATCA 57.548 32.000 0.00 0.00 0.00 3.07
3557 3863 8.746922 TTTCTTCATTTATTGCTTGTCACATC 57.253 30.769 0.00 0.00 0.00 3.06
3558 3864 9.545105 TTTTTCTTCATTTATTGCTTGTCACAT 57.455 25.926 0.00 0.00 0.00 3.21
3559 3865 8.939201 TTTTTCTTCATTTATTGCTTGTCACA 57.061 26.923 0.00 0.00 0.00 3.58
3560 3866 9.248291 TCTTTTTCTTCATTTATTGCTTGTCAC 57.752 29.630 0.00 0.00 0.00 3.67
3561 3867 9.467258 CTCTTTTTCTTCATTTATTGCTTGTCA 57.533 29.630 0.00 0.00 0.00 3.58
3562 3868 8.919661 CCTCTTTTTCTTCATTTATTGCTTGTC 58.080 33.333 0.00 0.00 0.00 3.18
3563 3869 7.386025 GCCTCTTTTTCTTCATTTATTGCTTGT 59.614 33.333 0.00 0.00 0.00 3.16
3564 3870 7.385752 TGCCTCTTTTTCTTCATTTATTGCTTG 59.614 33.333 0.00 0.00 0.00 4.01
3565 3871 7.444299 TGCCTCTTTTTCTTCATTTATTGCTT 58.556 30.769 0.00 0.00 0.00 3.91
3566 3872 6.996509 TGCCTCTTTTTCTTCATTTATTGCT 58.003 32.000 0.00 0.00 0.00 3.91
3567 3873 7.332678 ACATGCCTCTTTTTCTTCATTTATTGC 59.667 33.333 0.00 0.00 0.00 3.56
3568 3874 8.653338 CACATGCCTCTTTTTCTTCATTTATTG 58.347 33.333 0.00 0.00 0.00 1.90
3569 3875 7.820872 CCACATGCCTCTTTTTCTTCATTTATT 59.179 33.333 0.00 0.00 0.00 1.40
3570 3876 7.038799 ACCACATGCCTCTTTTTCTTCATTTAT 60.039 33.333 0.00 0.00 0.00 1.40
3571 3877 6.267471 ACCACATGCCTCTTTTTCTTCATTTA 59.733 34.615 0.00 0.00 0.00 1.40
3572 3878 5.070847 ACCACATGCCTCTTTTTCTTCATTT 59.929 36.000 0.00 0.00 0.00 2.32
3573 3879 4.590222 ACCACATGCCTCTTTTTCTTCATT 59.410 37.500 0.00 0.00 0.00 2.57
3574 3880 4.154942 ACCACATGCCTCTTTTTCTTCAT 58.845 39.130 0.00 0.00 0.00 2.57
3575 3881 3.565307 ACCACATGCCTCTTTTTCTTCA 58.435 40.909 0.00 0.00 0.00 3.02
3576 3882 5.009610 TGTTACCACATGCCTCTTTTTCTTC 59.990 40.000 0.00 0.00 0.00 2.87
3577 3883 4.892934 TGTTACCACATGCCTCTTTTTCTT 59.107 37.500 0.00 0.00 0.00 2.52
3578 3884 4.469657 TGTTACCACATGCCTCTTTTTCT 58.530 39.130 0.00 0.00 0.00 2.52
3579 3885 4.846779 TGTTACCACATGCCTCTTTTTC 57.153 40.909 0.00 0.00 0.00 2.29
3580 3886 5.105756 GCTATGTTACCACATGCCTCTTTTT 60.106 40.000 0.00 0.00 43.92 1.94
3581 3887 4.399303 GCTATGTTACCACATGCCTCTTTT 59.601 41.667 0.00 0.00 43.92 2.27
3582 3888 3.947834 GCTATGTTACCACATGCCTCTTT 59.052 43.478 0.00 0.00 43.92 2.52
3583 3889 3.200825 AGCTATGTTACCACATGCCTCTT 59.799 43.478 0.00 0.00 43.92 2.85
3584 3890 2.774234 AGCTATGTTACCACATGCCTCT 59.226 45.455 0.00 0.00 43.92 3.69
3585 3891 3.199880 AGCTATGTTACCACATGCCTC 57.800 47.619 0.00 0.00 43.92 4.70
3586 3892 3.711704 ACTAGCTATGTTACCACATGCCT 59.288 43.478 0.00 0.00 43.92 4.75
3587 3893 4.073293 ACTAGCTATGTTACCACATGCC 57.927 45.455 0.00 0.00 43.92 4.40
3588 3894 6.281405 AGTAACTAGCTATGTTACCACATGC 58.719 40.000 25.92 11.98 46.31 4.06
3589 3895 8.630917 AGTAGTAACTAGCTATGTTACCACATG 58.369 37.037 26.31 0.00 46.31 3.21
3590 3896 8.763984 AGTAGTAACTAGCTATGTTACCACAT 57.236 34.615 26.31 18.10 46.31 3.21
3591 3897 9.685276 TTAGTAGTAACTAGCTATGTTACCACA 57.315 33.333 26.31 17.89 46.31 4.17
3598 3904 9.629878 ACTCACATTAGTAGTAACTAGCTATGT 57.370 33.333 0.00 0.00 37.53 2.29
3619 3925 7.545615 TGTCTTGATATGTGTGATGTTACTCAC 59.454 37.037 7.61 7.61 44.70 3.51
3620 3926 7.610865 TGTCTTGATATGTGTGATGTTACTCA 58.389 34.615 0.00 0.00 0.00 3.41
3621 3927 8.479313 TTGTCTTGATATGTGTGATGTTACTC 57.521 34.615 0.00 0.00 0.00 2.59
3622 3928 8.314021 TCTTGTCTTGATATGTGTGATGTTACT 58.686 33.333 0.00 0.00 0.00 2.24
3623 3929 8.479313 TCTTGTCTTGATATGTGTGATGTTAC 57.521 34.615 0.00 0.00 0.00 2.50
3624 3930 9.101655 CATCTTGTCTTGATATGTGTGATGTTA 57.898 33.333 0.00 0.00 0.00 2.41
3625 3931 7.825761 TCATCTTGTCTTGATATGTGTGATGTT 59.174 33.333 0.00 0.00 32.21 2.71
3626 3932 7.333323 TCATCTTGTCTTGATATGTGTGATGT 58.667 34.615 0.00 0.00 32.21 3.06
3627 3933 7.494952 ACTCATCTTGTCTTGATATGTGTGATG 59.505 37.037 0.00 0.00 0.00 3.07
3628 3934 7.563020 ACTCATCTTGTCTTGATATGTGTGAT 58.437 34.615 0.00 0.00 0.00 3.06
3629 3935 6.939622 ACTCATCTTGTCTTGATATGTGTGA 58.060 36.000 0.00 0.00 0.00 3.58
3630 3936 7.040494 AGACTCATCTTGTCTTGATATGTGTG 58.960 38.462 0.00 0.00 41.45 3.82
3631 3937 7.180322 AGACTCATCTTGTCTTGATATGTGT 57.820 36.000 0.00 0.00 41.45 3.72
3636 3942 9.647918 AGGTTATAGACTCATCTTGTCTTGATA 57.352 33.333 1.67 0.00 41.45 2.15
3637 3943 8.546083 AGGTTATAGACTCATCTTGTCTTGAT 57.454 34.615 1.67 0.00 41.45 2.57
3638 3944 7.962995 AGGTTATAGACTCATCTTGTCTTGA 57.037 36.000 1.67 0.00 41.45 3.02
3682 3988 5.121105 GGGGAGTAACATATGTGTGGTAAC 58.879 45.833 9.63 1.91 38.92 2.50
3683 3989 4.783763 TGGGGAGTAACATATGTGTGGTAA 59.216 41.667 9.63 0.00 38.92 2.85
3684 3990 4.162698 GTGGGGAGTAACATATGTGTGGTA 59.837 45.833 9.63 0.00 38.92 3.25
3685 3991 3.054655 GTGGGGAGTAACATATGTGTGGT 60.055 47.826 9.63 0.00 38.92 4.16
3686 3992 3.199946 AGTGGGGAGTAACATATGTGTGG 59.800 47.826 9.63 0.00 38.92 4.17
3687 3993 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
3688 3994 7.302948 TCTATAGTGGGGAGTAACATATGTGT 58.697 38.462 9.63 2.63 41.28 3.72
3689 3995 7.093727 CCTCTATAGTGGGGAGTAACATATGTG 60.094 44.444 9.63 0.00 0.00 3.21
3690 3996 6.954684 CCTCTATAGTGGGGAGTAACATATGT 59.045 42.308 12.29 1.41 0.00 2.29
3691 3997 6.954684 ACCTCTATAGTGGGGAGTAACATATG 59.045 42.308 21.82 0.00 33.22 1.78
3692 3998 7.117331 ACCTCTATAGTGGGGAGTAACATAT 57.883 40.000 21.82 0.00 33.22 1.78
3693 3999 6.541264 ACCTCTATAGTGGGGAGTAACATA 57.459 41.667 21.82 0.00 33.22 2.29
3694 4000 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
3695 4001 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
3696 4002 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
3697 4003 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
3698 4004 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
3699 4005 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
3700 4006 5.950023 TGTTACTACCTCTATAGTGGGGAG 58.050 45.833 21.82 20.04 36.09 4.30
3701 4007 5.999987 TGTTACTACCTCTATAGTGGGGA 57.000 43.478 21.82 11.28 36.09 4.81
3702 4008 7.696981 TCTATGTTACTACCTCTATAGTGGGG 58.303 42.308 21.82 16.35 36.09 4.96
3703 4009 8.384718 ACTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
3713 4019 9.352191 CCATGTTACTACTCTATGTTACTACCT 57.648 37.037 0.00 0.00 0.00 3.08
3714 4020 8.574737 CCCATGTTACTACTCTATGTTACTACC 58.425 40.741 0.00 0.00 0.00 3.18
3715 4021 8.081025 GCCCATGTTACTACTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
3716 4022 7.781219 TGCCCATGTTACTACTCTATGTTACTA 59.219 37.037 0.00 0.00 0.00 1.82
3717 4023 6.610020 TGCCCATGTTACTACTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
3718 4024 6.812998 TGCCCATGTTACTACTCTATGTTAC 58.187 40.000 0.00 0.00 0.00 2.50
3719 4025 7.441836 CATGCCCATGTTACTACTCTATGTTA 58.558 38.462 0.13 0.00 34.23 2.41
3720 4026 5.950544 TGCCCATGTTACTACTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
3721 4027 5.858381 CATGCCCATGTTACTACTCTATGT 58.142 41.667 0.13 0.00 34.23 2.29
3735 4041 5.368145 ACATAGTGTAGTAACATGCCCATG 58.632 41.667 6.71 6.71 44.15 3.66
3736 4042 5.630415 ACATAGTGTAGTAACATGCCCAT 57.370 39.130 0.00 0.00 38.08 4.00
3737 4043 5.429681 AACATAGTGTAGTAACATGCCCA 57.570 39.130 0.00 0.00 38.08 5.36
3738 4044 6.579865 AGTAACATAGTGTAGTAACATGCCC 58.420 40.000 0.00 0.00 38.08 5.36
3739 4045 7.650903 GGTAGTAACATAGTGTAGTAACATGCC 59.349 40.741 0.00 0.00 38.08 4.40
3740 4046 7.650903 GGGTAGTAACATAGTGTAGTAACATGC 59.349 40.741 0.00 0.00 38.08 4.06
3741 4047 8.689061 TGGGTAGTAACATAGTGTAGTAACATG 58.311 37.037 0.00 0.00 38.08 3.21
3742 4048 8.827832 TGGGTAGTAACATAGTGTAGTAACAT 57.172 34.615 0.00 0.00 38.08 2.71
3743 4049 8.827832 ATGGGTAGTAACATAGTGTAGTAACA 57.172 34.615 0.00 0.00 0.00 2.41
3744 4050 9.525409 CAATGGGTAGTAACATAGTGTAGTAAC 57.475 37.037 0.00 0.00 0.00 2.50
3745 4051 9.258629 ACAATGGGTAGTAACATAGTGTAGTAA 57.741 33.333 0.00 0.00 0.00 2.24
3746 4052 8.689061 CACAATGGGTAGTAACATAGTGTAGTA 58.311 37.037 0.00 0.00 0.00 1.82
3747 4053 7.364408 CCACAATGGGTAGTAACATAGTGTAGT 60.364 40.741 0.00 0.00 32.67 2.73
3748 4054 6.984474 CCACAATGGGTAGTAACATAGTGTAG 59.016 42.308 0.00 0.00 32.67 2.74
3749 4055 6.630863 GCCACAATGGGTAGTAACATAGTGTA 60.631 42.308 0.00 0.00 38.19 2.90
3750 4056 5.741011 CCACAATGGGTAGTAACATAGTGT 58.259 41.667 0.00 0.00 32.67 3.55
3751 4057 4.574828 GCCACAATGGGTAGTAACATAGTG 59.425 45.833 0.00 0.00 38.19 2.74
3752 4058 4.777463 GCCACAATGGGTAGTAACATAGT 58.223 43.478 0.00 0.00 38.19 2.12
3764 4070 4.263068 CCCTATTAGACTAGCCACAATGGG 60.263 50.000 0.00 0.00 38.19 4.00
3765 4071 4.593206 TCCCTATTAGACTAGCCACAATGG 59.407 45.833 0.00 0.00 41.55 3.16
3766 4072 5.808366 TCCCTATTAGACTAGCCACAATG 57.192 43.478 0.00 0.00 0.00 2.82
3767 4073 6.084738 TCATCCCTATTAGACTAGCCACAAT 58.915 40.000 0.00 0.00 0.00 2.71
3768 4074 5.464069 TCATCCCTATTAGACTAGCCACAA 58.536 41.667 0.00 0.00 0.00 3.33
3769 4075 5.074746 TCATCCCTATTAGACTAGCCACA 57.925 43.478 0.00 0.00 0.00 4.17
3770 4076 5.081032 ACTCATCCCTATTAGACTAGCCAC 58.919 45.833 0.00 0.00 0.00 5.01
3771 4077 5.340891 ACTCATCCCTATTAGACTAGCCA 57.659 43.478 0.00 0.00 0.00 4.75
3772 4078 6.127563 GCTAACTCATCCCTATTAGACTAGCC 60.128 46.154 0.00 0.00 0.00 3.93
3773 4079 6.403855 CGCTAACTCATCCCTATTAGACTAGC 60.404 46.154 0.00 0.00 0.00 3.42
3774 4080 6.094325 CCGCTAACTCATCCCTATTAGACTAG 59.906 46.154 0.00 0.00 0.00 2.57
3775 4081 5.944599 CCGCTAACTCATCCCTATTAGACTA 59.055 44.000 0.00 0.00 0.00 2.59
3776 4082 4.767928 CCGCTAACTCATCCCTATTAGACT 59.232 45.833 0.00 0.00 0.00 3.24
3777 4083 4.082136 CCCGCTAACTCATCCCTATTAGAC 60.082 50.000 0.00 0.00 0.00 2.59
3778 4084 4.087182 CCCGCTAACTCATCCCTATTAGA 58.913 47.826 0.00 0.00 0.00 2.10
3779 4085 3.368531 GCCCGCTAACTCATCCCTATTAG 60.369 52.174 0.00 0.00 0.00 1.73
3780 4086 2.565834 GCCCGCTAACTCATCCCTATTA 59.434 50.000 0.00 0.00 0.00 0.98
3781 4087 1.348036 GCCCGCTAACTCATCCCTATT 59.652 52.381 0.00 0.00 0.00 1.73
3782 4088 0.977395 GCCCGCTAACTCATCCCTAT 59.023 55.000 0.00 0.00 0.00 2.57
3783 4089 0.105658 AGCCCGCTAACTCATCCCTA 60.106 55.000 0.00 0.00 0.00 3.53
3784 4090 0.105658 TAGCCCGCTAACTCATCCCT 60.106 55.000 0.00 0.00 0.00 4.20
3785 4091 0.977395 ATAGCCCGCTAACTCATCCC 59.023 55.000 0.00 0.00 31.73 3.85
3786 4092 3.955650 TTATAGCCCGCTAACTCATCC 57.044 47.619 0.00 0.00 31.73 3.51
3815 4121 9.209048 TCCTCCAACTAAGCAGAAATATACTAA 57.791 33.333 0.00 0.00 0.00 2.24
3816 4122 8.777578 TCCTCCAACTAAGCAGAAATATACTA 57.222 34.615 0.00 0.00 0.00 1.82
3817 4123 7.676683 TCCTCCAACTAAGCAGAAATATACT 57.323 36.000 0.00 0.00 0.00 2.12
3818 4124 8.732746 TTTCCTCCAACTAAGCAGAAATATAC 57.267 34.615 0.00 0.00 0.00 1.47
3819 4125 8.768397 TCTTTCCTCCAACTAAGCAGAAATATA 58.232 33.333 0.00 0.00 0.00 0.86
3820 4126 7.633789 TCTTTCCTCCAACTAAGCAGAAATAT 58.366 34.615 0.00 0.00 0.00 1.28
3821 4127 7.016153 TCTTTCCTCCAACTAAGCAGAAATA 57.984 36.000 0.00 0.00 0.00 1.40
3822 4128 5.880901 TCTTTCCTCCAACTAAGCAGAAAT 58.119 37.500 0.00 0.00 0.00 2.17
3823 4129 5.071788 TCTCTTTCCTCCAACTAAGCAGAAA 59.928 40.000 0.00 0.00 0.00 2.52
3824 4130 4.593206 TCTCTTTCCTCCAACTAAGCAGAA 59.407 41.667 0.00 0.00 0.00 3.02
3825 4131 4.160329 TCTCTTTCCTCCAACTAAGCAGA 58.840 43.478 0.00 0.00 0.00 4.26
3826 4132 4.543590 TCTCTTTCCTCCAACTAAGCAG 57.456 45.455 0.00 0.00 0.00 4.24
3827 4133 4.974645 TTCTCTTTCCTCCAACTAAGCA 57.025 40.909 0.00 0.00 0.00 3.91
3828 4134 5.182190 CCTTTTCTCTTTCCTCCAACTAAGC 59.818 44.000 0.00 0.00 0.00 3.09
3829 4135 6.299922 ACCTTTTCTCTTTCCTCCAACTAAG 58.700 40.000 0.00 0.00 0.00 2.18
3830 4136 6.262056 ACCTTTTCTCTTTCCTCCAACTAA 57.738 37.500 0.00 0.00 0.00 2.24
3831 4137 5.906772 ACCTTTTCTCTTTCCTCCAACTA 57.093 39.130 0.00 0.00 0.00 2.24
3832 4138 4.797912 ACCTTTTCTCTTTCCTCCAACT 57.202 40.909 0.00 0.00 0.00 3.16
3833 4139 5.048643 GCTTACCTTTTCTCTTTCCTCCAAC 60.049 44.000 0.00 0.00 0.00 3.77
3834 4140 5.070685 GCTTACCTTTTCTCTTTCCTCCAA 58.929 41.667 0.00 0.00 0.00 3.53
3835 4141 4.652822 GCTTACCTTTTCTCTTTCCTCCA 58.347 43.478 0.00 0.00 0.00 3.86
3836 4142 3.685272 CGCTTACCTTTTCTCTTTCCTCC 59.315 47.826 0.00 0.00 0.00 4.30
3837 4143 3.685272 CCGCTTACCTTTTCTCTTTCCTC 59.315 47.826 0.00 0.00 0.00 3.71
3838 4144 3.559384 CCCGCTTACCTTTTCTCTTTCCT 60.559 47.826 0.00 0.00 0.00 3.36
3839 4145 2.747989 CCCGCTTACCTTTTCTCTTTCC 59.252 50.000 0.00 0.00 0.00 3.13
3840 4146 2.161808 GCCCGCTTACCTTTTCTCTTTC 59.838 50.000 0.00 0.00 0.00 2.62
3841 4147 2.160205 GCCCGCTTACCTTTTCTCTTT 58.840 47.619 0.00 0.00 0.00 2.52
3842 4148 1.351350 AGCCCGCTTACCTTTTCTCTT 59.649 47.619 0.00 0.00 0.00 2.85
3843 4149 0.984995 AGCCCGCTTACCTTTTCTCT 59.015 50.000 0.00 0.00 0.00 3.10
3844 4150 1.066071 AGAGCCCGCTTACCTTTTCTC 60.066 52.381 0.00 0.00 0.00 2.87
3845 4151 0.984995 AGAGCCCGCTTACCTTTTCT 59.015 50.000 0.00 0.00 0.00 2.52
3846 4152 1.738350 GAAGAGCCCGCTTACCTTTTC 59.262 52.381 0.00 0.00 0.00 2.29
3847 4153 1.073284 TGAAGAGCCCGCTTACCTTTT 59.927 47.619 0.00 0.00 0.00 2.27
3848 4154 0.690762 TGAAGAGCCCGCTTACCTTT 59.309 50.000 0.00 0.00 0.00 3.11
3849 4155 0.912486 ATGAAGAGCCCGCTTACCTT 59.088 50.000 0.00 0.00 0.00 3.50
3850 4156 0.179000 CATGAAGAGCCCGCTTACCT 59.821 55.000 0.00 0.00 0.00 3.08
3851 4157 0.178068 TCATGAAGAGCCCGCTTACC 59.822 55.000 0.00 0.00 0.00 2.85
3852 4158 2.024176 TTCATGAAGAGCCCGCTTAC 57.976 50.000 3.38 0.00 0.00 2.34
3853 4159 2.779755 TTTCATGAAGAGCCCGCTTA 57.220 45.000 8.41 0.00 0.00 3.09
3854 4160 1.815003 CTTTTCATGAAGAGCCCGCTT 59.185 47.619 12.58 0.00 0.00 4.68
3855 4161 1.457346 CTTTTCATGAAGAGCCCGCT 58.543 50.000 12.58 0.00 0.00 5.52
3856 4162 0.179153 GCTTTTCATGAAGAGCCCGC 60.179 55.000 31.06 14.09 41.17 6.13
3860 4166 1.817447 AGCTGGCTTTTCATGAAGAGC 59.183 47.619 32.50 32.50 44.81 4.09
3861 4167 3.345414 AGAGCTGGCTTTTCATGAAGAG 58.655 45.455 19.15 19.15 0.00 2.85
3862 4168 3.430042 AGAGCTGGCTTTTCATGAAGA 57.570 42.857 8.41 3.12 0.00 2.87
3863 4169 3.065095 GCTAGAGCTGGCTTTTCATGAAG 59.935 47.826 8.41 0.00 38.21 3.02
3864 4170 3.012518 GCTAGAGCTGGCTTTTCATGAA 58.987 45.455 3.38 3.38 38.21 2.57
3865 4171 2.026915 TGCTAGAGCTGGCTTTTCATGA 60.027 45.455 7.36 0.00 42.66 3.07
3866 4172 2.097142 GTGCTAGAGCTGGCTTTTCATG 59.903 50.000 7.36 0.00 42.66 3.07
3867 4173 2.363683 GTGCTAGAGCTGGCTTTTCAT 58.636 47.619 7.36 0.00 42.66 2.57
3868 4174 1.813513 GTGCTAGAGCTGGCTTTTCA 58.186 50.000 7.36 0.00 42.66 2.69
3869 4175 0.723981 CGTGCTAGAGCTGGCTTTTC 59.276 55.000 7.36 0.00 42.66 2.29
3870 4176 0.035458 ACGTGCTAGAGCTGGCTTTT 59.965 50.000 7.36 0.00 42.66 2.27
3871 4177 0.671781 CACGTGCTAGAGCTGGCTTT 60.672 55.000 0.82 0.00 42.66 3.51
3872 4178 1.079543 CACGTGCTAGAGCTGGCTT 60.080 57.895 0.82 0.00 42.66 4.35
3873 4179 2.575993 CACGTGCTAGAGCTGGCT 59.424 61.111 0.82 0.00 42.66 4.75
3874 4180 3.191539 GCACGTGCTAGAGCTGGC 61.192 66.667 32.55 1.87 42.66 4.85
3889 4195 1.002430 CTCACAAAGTGCCTAGGAGCA 59.998 52.381 14.75 0.22 41.46 4.26
3890 4196 1.276421 TCTCACAAAGTGCCTAGGAGC 59.724 52.381 14.75 3.68 32.98 4.70
3891 4197 3.685139 TTCTCACAAAGTGCCTAGGAG 57.315 47.619 14.75 0.00 32.98 3.69
3892 4198 3.582647 TCATTCTCACAAAGTGCCTAGGA 59.417 43.478 14.75 0.00 32.98 2.94
3893 4199 3.942829 TCATTCTCACAAAGTGCCTAGG 58.057 45.455 3.67 3.67 32.98 3.02
3894 4200 5.702670 TCTTTCATTCTCACAAAGTGCCTAG 59.297 40.000 0.00 0.00 32.98 3.02
3895 4201 5.620206 TCTTTCATTCTCACAAAGTGCCTA 58.380 37.500 0.00 0.00 32.98 3.93
3896 4202 4.464008 TCTTTCATTCTCACAAAGTGCCT 58.536 39.130 0.00 0.00 32.98 4.75
3897 4203 4.836125 TCTTTCATTCTCACAAAGTGCC 57.164 40.909 0.00 0.00 32.98 5.01
3898 4204 6.005583 TCATCTTTCATTCTCACAAAGTGC 57.994 37.500 0.00 0.00 32.98 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.