Multiple sequence alignment - TraesCS2D01G341600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G341600 chr2D 100.000 5321 0 0 1 5321 436368139 436373459 0.000000e+00 9827
1 TraesCS2D01G341600 chr2B 91.389 4657 239 85 135 4744 514866345 514861804 0.000000e+00 6229
2 TraesCS2D01G341600 chr2B 85.492 386 37 12 148 518 30332839 30333220 8.360000e-103 385
3 TraesCS2D01G341600 chr2B 97.768 224 4 1 5099 5321 514861473 514861250 8.360000e-103 385
4 TraesCS2D01G341600 chr2B 88.398 181 15 5 4924 5098 91557991 91558171 4.170000e-51 213
5 TraesCS2D01G341600 chr2B 89.744 156 15 1 4938 5092 11520353 11520508 1.170000e-46 198
6 TraesCS2D01G341600 chr2B 90.123 81 4 2 1 79 514866554 514866476 9.430000e-18 102
7 TraesCS2D01G341600 chr2A 90.364 4504 270 68 44 4488 550538292 550542690 0.000000e+00 5762
8 TraesCS2D01G341600 chr2A 85.027 748 83 18 1932 2667 723566176 723566906 0.000000e+00 734
9 TraesCS2D01G341600 chr2A 94.643 224 11 1 5099 5321 550542861 550543084 3.940000e-91 346
10 TraesCS2D01G341600 chr2A 89.674 184 18 1 4749 4932 550542690 550542872 3.200000e-57 233
11 TraesCS2D01G341600 chr2A 80.392 306 42 10 1573 1877 723565882 723566170 3.230000e-52 217
12 TraesCS2D01G341600 chr2A 81.159 276 39 3 4485 4748 685044166 685044440 5.400000e-50 209
13 TraesCS2D01G341600 chr7D 85.428 748 81 16 1932 2667 31965561 31964830 0.000000e+00 752
14 TraesCS2D01G341600 chr7D 79.412 306 42 12 1573 1877 31965852 31965567 4.200000e-46 196
15 TraesCS2D01G341600 chr4A 85.141 747 84 17 1932 2667 417625545 417626275 0.000000e+00 739
16 TraesCS2D01G341600 chr4A 80.065 306 43 10 1573 1877 417625251 417625539 1.500000e-50 211
17 TraesCS2D01G341600 chr4A 80.755 265 48 2 4486 4748 412260188 412260451 2.510000e-48 204
18 TraesCS2D01G341600 chr4A 89.873 158 14 2 4943 5098 686938993 686938836 9.040000e-48 202
19 TraesCS2D01G341600 chr4A 89.024 164 15 3 4937 5098 148761288 148761126 3.250000e-47 200
20 TraesCS2D01G341600 chr6B 82.895 684 68 23 1990 2666 520243070 520243711 2.150000e-158 569
21 TraesCS2D01G341600 chr5B 83.166 398 35 17 148 518 649446145 649446537 8.540000e-88 335
22 TraesCS2D01G341600 chr1D 84.766 256 35 4 4490 4743 438210947 438211200 2.460000e-63 254
23 TraesCS2D01G341600 chr1D 82.890 263 41 4 4486 4745 26258938 26259199 3.200000e-57 233
24 TraesCS2D01G341600 chr7B 83.835 266 41 1 4485 4748 41043502 41043237 8.850000e-63 252
25 TraesCS2D01G341600 chr7B 92.105 152 8 2 4951 5098 709246695 709246544 1.500000e-50 211
26 TraesCS2D01G341600 chr3B 91.566 166 13 1 4934 5098 633123460 633123295 1.490000e-55 228
27 TraesCS2D01G341600 chr3A 88.083 193 17 3 2217 2409 633293934 633293748 1.930000e-54 224
28 TraesCS2D01G341600 chr3A 92.000 125 9 1 1932 2055 633294063 633293939 1.970000e-39 174
29 TraesCS2D01G341600 chr5D 91.772 158 12 1 4942 5098 353460458 353460301 8.970000e-53 219
30 TraesCS2D01G341600 chr5D 79.554 269 47 5 4484 4748 27890453 27890717 9.100000e-43 185
31 TraesCS2D01G341600 chr4D 92.208 154 12 0 4945 5098 506430065 506429912 8.970000e-53 219
32 TraesCS2D01G341600 chr1A 92.208 154 12 0 4945 5098 10221554 10221707 8.970000e-53 219
33 TraesCS2D01G341600 chr1A 86.928 153 20 0 4571 4723 534927300 534927452 7.080000e-39 172
34 TraesCS2D01G341600 chr7A 81.522 276 37 5 4485 4748 316345821 316345548 1.160000e-51 215
35 TraesCS2D01G341600 chr7A 83.482 224 36 1 4524 4747 281561819 281562041 1.940000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G341600 chr2D 436368139 436373459 5320 False 9827.000000 9827 100.000000 1 5321 1 chr2D.!!$F1 5320
1 TraesCS2D01G341600 chr2B 514861250 514866554 5304 True 2238.666667 6229 93.093333 1 5321 3 chr2B.!!$R1 5320
2 TraesCS2D01G341600 chr2A 550538292 550543084 4792 False 2113.666667 5762 91.560333 44 5321 3 chr2A.!!$F2 5277
3 TraesCS2D01G341600 chr2A 723565882 723566906 1024 False 475.500000 734 82.709500 1573 2667 2 chr2A.!!$F3 1094
4 TraesCS2D01G341600 chr7D 31964830 31965852 1022 True 474.000000 752 82.420000 1573 2667 2 chr7D.!!$R1 1094
5 TraesCS2D01G341600 chr4A 417625251 417626275 1024 False 475.000000 739 82.603000 1573 2667 2 chr4A.!!$F2 1094
6 TraesCS2D01G341600 chr6B 520243070 520243711 641 False 569.000000 569 82.895000 1990 2666 1 chr6B.!!$F1 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 983 0.529119 GATCCGCACCGTCCGTTTAT 60.529 55.000 0.00 0.00 0.0 1.40 F
1723 1819 2.429610 GCACATGAAAATCTGGAGCCAT 59.570 45.455 0.00 0.00 0.0 4.40 F
2342 2451 1.470098 CGGCAAATGCTATCCTATGGC 59.530 52.381 5.25 0.00 41.7 4.40 F
3717 3854 0.521735 GGAGGTGTTCAATTGTCCGC 59.478 55.000 5.13 3.95 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 1982 0.317160 CCTTATCCGCGCTATGTCCA 59.683 55.000 5.56 0.0 0.0 4.02 R
3275 3398 1.073923 GAAAGAAAGGTCTCCCAGCCA 59.926 52.381 0.00 0.0 30.7 4.75 R
3813 3950 0.898320 GAGCTCTGAGGGCAACTACA 59.102 55.000 7.24 0.0 0.0 2.74 R
5047 5367 0.034670 GGGCTTCCTGATGTTGCTCT 60.035 55.000 0.00 0.0 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.852282 ACCTTAAACAAGCACATTTCAGT 57.148 34.783 0.00 0.00 0.00 3.41
36 37 5.591877 AGCACATTTCAGTATTCCCTTCATC 59.408 40.000 0.00 0.00 0.00 2.92
39 40 6.825213 CACATTTCAGTATTCCCTTCATCTCA 59.175 38.462 0.00 0.00 0.00 3.27
40 41 7.501559 CACATTTCAGTATTCCCTTCATCTCAT 59.498 37.037 0.00 0.00 0.00 2.90
42 43 9.565090 CATTTCAGTATTCCCTTCATCTCATAA 57.435 33.333 0.00 0.00 0.00 1.90
120 181 9.407380 TCCAAATTTAGCAATATTAGAAGAGCA 57.593 29.630 0.00 0.00 0.00 4.26
193 273 6.437928 TCAAGAACAAATGAAGAATTCCACG 58.562 36.000 0.65 0.00 46.93 4.94
202 282 6.910536 ATGAAGAATTCCACGATTACAGTC 57.089 37.500 0.65 0.00 46.93 3.51
204 284 7.165460 TGAAGAATTCCACGATTACAGTCTA 57.835 36.000 0.65 0.00 46.93 2.59
205 285 7.258441 TGAAGAATTCCACGATTACAGTCTAG 58.742 38.462 0.65 0.00 46.93 2.43
231 311 1.936203 GCTCGTAACGCTGTGGGTTTA 60.936 52.381 5.40 0.00 39.36 2.01
232 312 1.723003 CTCGTAACGCTGTGGGTTTAC 59.277 52.381 5.40 2.58 39.36 2.01
234 314 0.792031 GTAACGCTGTGGGTTTACCG 59.208 55.000 5.40 0.00 44.64 4.02
251 331 2.480845 ACCGCGGCTAAATTATCAGAC 58.519 47.619 28.58 0.00 0.00 3.51
285 365 8.263940 TGAAGTGGTAAAACTATGTTAGATGC 57.736 34.615 0.00 0.00 0.00 3.91
289 369 8.046708 AGTGGTAAAACTATGTTAGATGCATCA 58.953 33.333 27.81 11.65 0.00 3.07
296 376 1.737236 TGTTAGATGCATCAACGGCAC 59.263 47.619 27.81 14.26 45.23 5.01
325 405 5.586877 TCTGAAACCCTAGAAAGTAGCCTA 58.413 41.667 0.00 0.00 0.00 3.93
336 416 4.876679 AGAAAGTAGCCTAAAATTCGAGCC 59.123 41.667 0.00 0.00 0.00 4.70
363 443 1.525175 AGGGTAGACCGGAGAGATCT 58.475 55.000 9.46 1.74 46.96 2.75
380 460 4.116961 AGATCTACTCACTTCTCGTCGAG 58.883 47.826 16.33 16.33 0.00 4.04
523 603 1.399744 CGGATCGAATCAGACCCCCA 61.400 60.000 0.00 0.00 0.00 4.96
549 629 4.760047 CCCACGGGTGAGGAAGCG 62.760 72.222 0.00 0.00 0.00 4.68
815 900 5.008980 CAGAGCAGAGGAGAAAGGATTTTT 58.991 41.667 0.00 0.00 39.27 1.94
848 933 8.633561 GCAGAAGAATTTAATTACTGGCCTATT 58.366 33.333 3.32 1.25 0.00 1.73
875 960 2.465860 TACATTCTGGTTCCACGTGG 57.534 50.000 29.26 29.26 0.00 4.94
879 964 1.890876 TTCTGGTTCCACGTGGATTG 58.109 50.000 36.52 24.38 44.98 2.67
896 981 2.433664 GATCCGCACCGTCCGTTT 60.434 61.111 0.00 0.00 0.00 3.60
897 982 1.153784 GATCCGCACCGTCCGTTTA 60.154 57.895 0.00 0.00 0.00 2.01
898 983 0.529119 GATCCGCACCGTCCGTTTAT 60.529 55.000 0.00 0.00 0.00 1.40
904 989 2.542205 CGCACCGTCCGTTTATGATCTA 60.542 50.000 0.00 0.00 0.00 1.98
925 1010 4.479993 GCTGTGCTGGGCGGAGAT 62.480 66.667 0.00 0.00 0.00 2.75
927 1012 3.320879 CTGTGCTGGGCGGAGATGT 62.321 63.158 0.00 0.00 0.00 3.06
1577 1663 9.270640 TGTTAGAAATACAAAATGCATGCTTTT 57.729 25.926 22.07 22.07 0.00 2.27
1658 1753 5.580691 TCTCATTGGACTGTTAATTAGTGCG 59.419 40.000 8.88 0.00 39.08 5.34
1660 1755 5.350365 TCATTGGACTGTTAATTAGTGCGAC 59.650 40.000 6.47 0.00 39.08 5.19
1664 1759 4.634443 GGACTGTTAATTAGTGCGACCAAT 59.366 41.667 0.66 0.00 0.00 3.16
1716 1811 5.813080 TGATCTCTGCACATGAAAATCTG 57.187 39.130 0.00 0.00 0.00 2.90
1717 1812 4.638865 TGATCTCTGCACATGAAAATCTGG 59.361 41.667 0.00 0.00 0.00 3.86
1723 1819 2.429610 GCACATGAAAATCTGGAGCCAT 59.570 45.455 0.00 0.00 0.00 4.40
1730 1826 4.263905 TGAAAATCTGGAGCCATAGGTTGT 60.264 41.667 0.00 0.00 0.00 3.32
1731 1827 4.322057 AAATCTGGAGCCATAGGTTGTT 57.678 40.909 0.00 0.00 0.00 2.83
1732 1828 4.322057 AATCTGGAGCCATAGGTTGTTT 57.678 40.909 0.00 0.00 0.00 2.83
1733 1829 3.806949 TCTGGAGCCATAGGTTGTTTT 57.193 42.857 0.00 0.00 0.00 2.43
1734 1830 3.420893 TCTGGAGCCATAGGTTGTTTTG 58.579 45.455 0.00 0.00 0.00 2.44
1735 1831 3.073798 TCTGGAGCCATAGGTTGTTTTGA 59.926 43.478 0.00 0.00 0.00 2.69
1736 1832 3.153919 TGGAGCCATAGGTTGTTTTGAC 58.846 45.455 0.00 0.00 0.00 3.18
1760 1856 4.935205 TGTTGAGTGATGTAGCCATACAAC 59.065 41.667 0.00 0.00 44.85 3.32
1798 1894 6.426980 TGACTGCTTTGTAGATATGCTTTG 57.573 37.500 0.00 0.00 0.00 2.77
1885 1982 4.165758 AGGATAGATCAGCTCAAAAGGCTT 59.834 41.667 0.00 0.00 38.03 4.35
1894 1991 2.159324 GCTCAAAAGGCTTGGACATAGC 60.159 50.000 0.00 1.11 37.91 2.97
1957 2054 7.223260 TCTTGATTTGAGTGATTTCATGCTT 57.777 32.000 0.00 0.00 0.00 3.91
1965 2062 8.791327 TTGAGTGATTTCATGCTTAATCTACA 57.209 30.769 12.91 9.06 33.08 2.74
2244 2350 5.046288 TGGTTGCATTTGAAAATTCCCTT 57.954 34.783 0.00 0.00 0.00 3.95
2336 2445 2.514205 ATTTGCGGCAAATGCTATCC 57.486 45.000 33.26 0.00 41.70 2.59
2342 2451 1.470098 CGGCAAATGCTATCCTATGGC 59.530 52.381 5.25 0.00 41.70 4.40
2384 2493 5.127194 TGGTGTTCAGAGTACATATGAGGAC 59.873 44.000 10.38 4.50 0.00 3.85
2499 2611 2.743183 CGGCCCTCTAATTCCTCTTGTG 60.743 54.545 0.00 0.00 0.00 3.33
2500 2612 2.505819 GGCCCTCTAATTCCTCTTGTGA 59.494 50.000 0.00 0.00 0.00 3.58
2504 2621 6.357367 GCCCTCTAATTCCTCTTGTGAATTA 58.643 40.000 0.00 0.00 41.40 1.40
2505 2622 6.828785 GCCCTCTAATTCCTCTTGTGAATTAA 59.171 38.462 6.83 0.00 41.59 1.40
2520 2637 6.862209 TGTGAATTAACTTGTTGCTTGAACT 58.138 32.000 0.00 0.00 35.37 3.01
2644 2765 7.445096 CACATGATGCCTGATTTACCTAATGTA 59.555 37.037 0.00 0.00 0.00 2.29
2785 2906 9.930693 CTATGGAAAACTGGAAGGTACTATATC 57.069 37.037 0.00 0.00 38.49 1.63
2813 2934 9.866655 ATCCAGTGCTTGATATTTTATTTCCTA 57.133 29.630 0.00 0.00 0.00 2.94
2939 3062 4.056740 CAGAGCTGCTAGTGGATATTGTG 58.943 47.826 0.15 0.00 0.00 3.33
3095 3218 2.494870 GGGCTTGAAATGCAGAGATGTT 59.505 45.455 0.00 0.00 39.01 2.71
3104 3227 2.176045 TGCAGAGATGTTAGAACCCGA 58.824 47.619 0.00 0.00 0.00 5.14
3131 3254 4.748548 GCCGGAATTCAGGTAAATATGGGA 60.749 45.833 23.25 0.00 33.54 4.37
3149 3272 2.289945 GGGATTCTGTGAAGTCACTGCT 60.290 50.000 12.43 3.64 46.55 4.24
3173 3296 9.746711 GCTATGTGCTTATAATTGATTAACGAG 57.253 33.333 0.00 0.00 38.95 4.18
3176 3299 8.138365 TGTGCTTATAATTGATTAACGAGGTC 57.862 34.615 0.00 0.00 0.00 3.85
3198 3321 5.006165 GTCTCCTCATTATTCTCTTTGTGCG 59.994 44.000 0.00 0.00 0.00 5.34
3205 3328 2.839486 TTCTCTTTGTGCGTCTCCAT 57.161 45.000 0.00 0.00 0.00 3.41
3275 3398 2.605338 GCGTGATTATGCCGCAAATGAT 60.605 45.455 0.00 0.00 46.26 2.45
3333 3456 1.160137 GGTACTCAACAGCTTGCCAG 58.840 55.000 0.00 0.00 0.00 4.85
3374 3497 4.523943 TGGGATGTGAAAATATGCTATGGC 59.476 41.667 0.00 0.00 39.26 4.40
3381 3504 6.491062 TGTGAAAATATGCTATGGCTTATGCT 59.509 34.615 9.75 1.63 38.34 3.79
3450 3575 4.202315 GCAATTTCCTTTTACTTGGGTGGT 60.202 41.667 0.00 0.00 0.00 4.16
3452 3577 6.463190 GCAATTTCCTTTTACTTGGGTGGTAA 60.463 38.462 0.00 0.00 0.00 2.85
3502 3637 3.366396 TGCCTTGTTGGTACCAAGAAAA 58.634 40.909 30.50 21.79 41.44 2.29
3504 3639 4.038642 TGCCTTGTTGGTACCAAGAAAATC 59.961 41.667 30.50 22.82 41.44 2.17
3529 3666 5.984695 ACTCTGTTCTGCTTGTATAGTGA 57.015 39.130 0.00 0.00 0.00 3.41
3536 3673 4.026744 TCTGCTTGTATAGTGAGCTCCTT 58.973 43.478 12.15 1.41 37.32 3.36
3550 3687 2.103941 AGCTCCTTAGATTGCTACTGGC 59.896 50.000 0.00 0.00 42.22 4.85
3556 3693 2.847327 AGATTGCTACTGGCGCATAT 57.153 45.000 10.83 0.00 45.43 1.78
3575 3712 6.166982 GCATATAGTTTATCACTGGGTCTCC 58.833 44.000 0.00 0.00 35.97 3.71
3602 3739 7.624360 TCCTTTTGATCTTGCGTAACATTAT 57.376 32.000 0.00 0.00 0.00 1.28
3605 3742 7.164171 CCTTTTGATCTTGCGTAACATTATTCG 59.836 37.037 0.00 0.00 0.00 3.34
3717 3854 0.521735 GGAGGTGTTCAATTGTCCGC 59.478 55.000 5.13 3.95 0.00 5.54
3800 3937 4.159879 ACACCAGGTTAATCTCTTACTCGG 59.840 45.833 0.00 0.00 0.00 4.63
3804 3941 5.450688 CCAGGTTAATCTCTTACTCGGACAG 60.451 48.000 0.00 0.00 0.00 3.51
3809 3946 7.174599 GGTTAATCTCTTACTCGGACAGCTATA 59.825 40.741 0.00 0.00 0.00 1.31
3813 3950 6.062749 TCTCTTACTCGGACAGCTATATGTT 58.937 40.000 0.00 0.00 32.25 2.71
3821 3958 4.209288 CGGACAGCTATATGTTGTAGTTGC 59.791 45.833 0.00 0.00 40.21 4.17
3823 3960 4.451900 ACAGCTATATGTTGTAGTTGCCC 58.548 43.478 0.00 0.00 38.35 5.36
3824 3961 4.164221 ACAGCTATATGTTGTAGTTGCCCT 59.836 41.667 0.00 0.00 38.35 5.19
3825 3962 4.752101 CAGCTATATGTTGTAGTTGCCCTC 59.248 45.833 0.00 0.00 0.00 4.30
3826 3963 4.408921 AGCTATATGTTGTAGTTGCCCTCA 59.591 41.667 0.00 0.00 0.00 3.86
3827 3964 4.752101 GCTATATGTTGTAGTTGCCCTCAG 59.248 45.833 0.00 0.00 0.00 3.35
3828 3965 5.453339 GCTATATGTTGTAGTTGCCCTCAGA 60.453 44.000 0.00 0.00 0.00 3.27
3829 3966 2.839486 TGTTGTAGTTGCCCTCAGAG 57.161 50.000 0.00 0.00 0.00 3.35
3834 3971 1.134848 GTAGTTGCCCTCAGAGCTCAG 60.135 57.143 17.77 8.39 0.00 3.35
3845 3982 4.082081 CCTCAGAGCTCAGATGATCATACC 60.082 50.000 17.77 0.00 0.00 2.73
3846 3983 4.738685 TCAGAGCTCAGATGATCATACCT 58.261 43.478 17.77 0.00 0.00 3.08
3874 4012 4.691175 ACATGCTGTGCTCAGAATAGTAG 58.309 43.478 19.61 5.26 43.76 2.57
3875 4013 4.161189 ACATGCTGTGCTCAGAATAGTAGT 59.839 41.667 19.61 5.87 43.76 2.73
3876 4014 4.115401 TGCTGTGCTCAGAATAGTAGTG 57.885 45.455 19.61 0.00 43.76 2.74
3877 4015 2.863137 GCTGTGCTCAGAATAGTAGTGC 59.137 50.000 19.61 0.00 43.76 4.40
3878 4016 3.452474 CTGTGCTCAGAATAGTAGTGCC 58.548 50.000 10.27 0.00 43.76 5.01
3884 4045 4.621747 GCTCAGAATAGTAGTGCCACAGTT 60.622 45.833 0.00 0.00 0.00 3.16
3905 4066 9.502091 ACAGTTACTGAATGAATACTTGCTAAA 57.498 29.630 20.07 0.00 35.18 1.85
3920 4081 7.133891 ACTTGCTAAACATGATCACACTTAC 57.866 36.000 0.00 0.00 0.00 2.34
4203 4364 3.003394 TGGTCAAATGTCTGGCATAGG 57.997 47.619 0.00 0.00 36.67 2.57
4249 4410 9.121517 CACTTGTATTGCAACTAGAAAAATCAG 57.878 33.333 0.00 0.00 32.90 2.90
4347 4508 3.619038 AGACTTTTGAGTTATAGCAGCGC 59.381 43.478 0.00 0.00 0.00 5.92
4398 4563 0.032952 TGCGACGTAACTCCTTTGCT 59.967 50.000 0.00 0.00 0.00 3.91
4399 4564 0.438830 GCGACGTAACTCCTTTGCTG 59.561 55.000 0.00 0.00 0.00 4.41
4400 4565 1.933500 GCGACGTAACTCCTTTGCTGA 60.934 52.381 0.00 0.00 0.00 4.26
4401 4566 2.400399 CGACGTAACTCCTTTGCTGAA 58.600 47.619 0.00 0.00 0.00 3.02
4402 4567 2.993899 CGACGTAACTCCTTTGCTGAAT 59.006 45.455 0.00 0.00 0.00 2.57
4403 4568 4.171005 CGACGTAACTCCTTTGCTGAATA 58.829 43.478 0.00 0.00 0.00 1.75
4404 4569 4.031426 CGACGTAACTCCTTTGCTGAATAC 59.969 45.833 0.00 0.00 0.00 1.89
4405 4570 4.251268 ACGTAACTCCTTTGCTGAATACC 58.749 43.478 0.00 0.00 0.00 2.73
4406 4571 3.621715 CGTAACTCCTTTGCTGAATACCC 59.378 47.826 0.00 0.00 0.00 3.69
4407 4572 2.808906 ACTCCTTTGCTGAATACCCC 57.191 50.000 0.00 0.00 0.00 4.95
4408 4573 2.279173 ACTCCTTTGCTGAATACCCCT 58.721 47.619 0.00 0.00 0.00 4.79
4409 4574 2.649816 ACTCCTTTGCTGAATACCCCTT 59.350 45.455 0.00 0.00 0.00 3.95
4410 4575 3.282885 CTCCTTTGCTGAATACCCCTTC 58.717 50.000 0.00 0.00 0.00 3.46
4419 4584 4.632153 CTGAATACCCCTTCCGAATACAG 58.368 47.826 0.00 0.00 0.00 2.74
4449 4614 6.826741 CGATTTAGTTATTTGAGAAAGGGGGA 59.173 38.462 0.00 0.00 0.00 4.81
4454 4619 5.196574 AGTTATTTGAGAAAGGGGGATGGAT 59.803 40.000 0.00 0.00 0.00 3.41
4498 4663 3.268334 ACATTTCCCTTAGGGCATGTACA 59.732 43.478 24.66 0.00 41.55 2.90
4500 4665 2.263895 TCCCTTAGGGCATGTACAGT 57.736 50.000 13.54 0.00 43.94 3.55
4515 4680 6.620733 GCATGTACAGTGGTTGATAAGACAAC 60.621 42.308 0.33 0.00 46.20 3.32
4530 4696 9.219603 TGATAAGACAACCATCTTAAAGTCTTG 57.780 33.333 13.95 0.00 42.88 3.02
4540 4706 8.462016 ACCATCTTAAAGTCTTGCATGTAATTC 58.538 33.333 0.00 0.00 0.00 2.17
4547 4713 6.922247 AGTCTTGCATGTAATTCAGAGATG 57.078 37.500 0.00 0.00 0.00 2.90
4548 4714 5.821470 AGTCTTGCATGTAATTCAGAGATGG 59.179 40.000 0.00 0.00 0.00 3.51
4558 4724 9.807649 ATGTAATTCAGAGATGGCAATAAAAAC 57.192 29.630 0.00 0.00 0.00 2.43
4563 4729 6.855836 TCAGAGATGGCAATAAAAACATGTC 58.144 36.000 0.00 0.00 34.82 3.06
4567 4733 7.611467 AGAGATGGCAATAAAAACATGTCTACA 59.389 33.333 0.00 0.00 40.71 2.74
4568 4734 8.121305 AGATGGCAATAAAAACATGTCTACAA 57.879 30.769 0.00 0.00 0.00 2.41
4569 4735 8.752187 AGATGGCAATAAAAACATGTCTACAAT 58.248 29.630 0.00 0.00 0.00 2.71
4572 4738 9.853555 TGGCAATAAAAACATGTCTACAATAAG 57.146 29.630 0.00 0.00 0.00 1.73
4573 4739 9.855021 GGCAATAAAAACATGTCTACAATAAGT 57.145 29.630 0.00 0.00 0.00 2.24
4624 4790 6.313519 AGCTATTCCTAGAAACATGGTGAA 57.686 37.500 0.00 0.00 0.00 3.18
4632 4798 8.279970 TCCTAGAAACATGGTGAAACATATTG 57.720 34.615 0.00 0.00 39.98 1.90
4635 4801 7.288810 AGAAACATGGTGAAACATATTGTGT 57.711 32.000 0.00 0.00 44.84 3.72
4702 4868 6.935240 TGATTTCTCTCTCCTTCACCTTAA 57.065 37.500 0.00 0.00 0.00 1.85
4710 4876 8.826765 TCTCTCTCCTTCACCTTAACATTTATT 58.173 33.333 0.00 0.00 0.00 1.40
4737 4903 7.766219 ACATAACACTAGTAAAATAGCACCG 57.234 36.000 0.00 0.00 0.00 4.94
4744 4910 6.587226 CACTAGTAAAATAGCACCGTTGTACA 59.413 38.462 0.00 0.00 0.00 2.90
4745 4911 7.277098 CACTAGTAAAATAGCACCGTTGTACAT 59.723 37.037 0.00 0.00 0.00 2.29
4746 4912 6.417191 AGTAAAATAGCACCGTTGTACATG 57.583 37.500 0.00 0.00 0.00 3.21
4748 4914 2.394930 ATAGCACCGTTGTACATGCA 57.605 45.000 18.64 7.55 40.63 3.96
4751 4917 1.873165 CACCGTTGTACATGCACCC 59.127 57.895 0.00 0.00 0.00 4.61
4752 4918 1.669760 ACCGTTGTACATGCACCCG 60.670 57.895 0.00 0.00 0.00 5.28
4754 4920 0.390078 CCGTTGTACATGCACCCGTA 60.390 55.000 0.00 0.00 0.00 4.02
4755 4921 1.647346 CGTTGTACATGCACCCGTAT 58.353 50.000 0.00 0.00 0.00 3.06
4756 4922 1.326245 CGTTGTACATGCACCCGTATG 59.674 52.381 0.00 0.00 40.73 2.39
4767 5085 2.600388 CCCGTATGGTGTGTATGCG 58.400 57.895 0.00 0.00 34.17 4.73
4780 5098 0.240945 GTATGCGCCAAACTGCTGTT 59.759 50.000 4.18 2.72 38.16 3.16
4797 5115 4.094887 TGCTGTTCAGTTTGTTGAGAAGTC 59.905 41.667 1.78 0.00 0.00 3.01
4798 5116 4.783450 GCTGTTCAGTTTGTTGAGAAGTCG 60.783 45.833 1.78 0.00 0.00 4.18
4929 5249 1.506493 GAGCATCGTGGAGCTTATGG 58.494 55.000 0.00 0.00 42.04 2.74
4930 5250 0.833287 AGCATCGTGGAGCTTATGGT 59.167 50.000 0.00 0.00 38.01 3.55
4931 5251 1.210478 AGCATCGTGGAGCTTATGGTT 59.790 47.619 0.00 0.00 38.01 3.67
4932 5252 1.599542 GCATCGTGGAGCTTATGGTTC 59.400 52.381 0.00 0.00 0.00 3.62
4933 5253 2.213499 CATCGTGGAGCTTATGGTTCC 58.787 52.381 0.00 0.00 44.29 3.62
4934 5254 1.568504 TCGTGGAGCTTATGGTTCCT 58.431 50.000 0.00 0.00 44.34 3.36
4935 5255 1.906574 TCGTGGAGCTTATGGTTCCTT 59.093 47.619 0.00 0.00 44.34 3.36
4936 5256 2.304761 TCGTGGAGCTTATGGTTCCTTT 59.695 45.455 0.00 0.00 44.34 3.11
4937 5257 3.081804 CGTGGAGCTTATGGTTCCTTTT 58.918 45.455 0.00 0.00 44.34 2.27
4938 5258 3.506067 CGTGGAGCTTATGGTTCCTTTTT 59.494 43.478 0.00 0.00 44.34 1.94
4965 5285 3.552132 TTTTTGAACCAGGCTTTTCCC 57.448 42.857 3.71 0.00 34.51 3.97
4966 5286 1.419381 TTTGAACCAGGCTTTTCCCC 58.581 50.000 3.71 0.00 34.51 4.81
4967 5287 0.560688 TTGAACCAGGCTTTTCCCCT 59.439 50.000 3.71 0.00 34.51 4.79
4968 5288 0.560688 TGAACCAGGCTTTTCCCCTT 59.439 50.000 3.71 0.00 34.51 3.95
4969 5289 1.062505 TGAACCAGGCTTTTCCCCTTT 60.063 47.619 3.71 0.00 34.51 3.11
4970 5290 1.618837 GAACCAGGCTTTTCCCCTTTC 59.381 52.381 0.00 0.00 34.51 2.62
4971 5291 0.178932 ACCAGGCTTTTCCCCTTTCC 60.179 55.000 0.00 0.00 34.51 3.13
4972 5292 0.178935 CCAGGCTTTTCCCCTTTCCA 60.179 55.000 0.00 0.00 34.51 3.53
4973 5293 1.553184 CCAGGCTTTTCCCCTTTCCAT 60.553 52.381 0.00 0.00 34.51 3.41
4974 5294 2.259917 CAGGCTTTTCCCCTTTCCATT 58.740 47.619 0.00 0.00 34.51 3.16
4975 5295 3.440127 CAGGCTTTTCCCCTTTCCATTA 58.560 45.455 0.00 0.00 34.51 1.90
4976 5296 3.195610 CAGGCTTTTCCCCTTTCCATTAC 59.804 47.826 0.00 0.00 34.51 1.89
4977 5297 3.077543 AGGCTTTTCCCCTTTCCATTACT 59.922 43.478 0.00 0.00 34.51 2.24
4978 5298 3.838317 GGCTTTTCCCCTTTCCATTACTT 59.162 43.478 0.00 0.00 0.00 2.24
4979 5299 4.286032 GGCTTTTCCCCTTTCCATTACTTT 59.714 41.667 0.00 0.00 0.00 2.66
4980 5300 5.479306 GCTTTTCCCCTTTCCATTACTTTC 58.521 41.667 0.00 0.00 0.00 2.62
4981 5301 5.011635 GCTTTTCCCCTTTCCATTACTTTCA 59.988 40.000 0.00 0.00 0.00 2.69
4982 5302 6.295859 GCTTTTCCCCTTTCCATTACTTTCAT 60.296 38.462 0.00 0.00 0.00 2.57
4983 5303 7.093509 GCTTTTCCCCTTTCCATTACTTTCATA 60.094 37.037 0.00 0.00 0.00 2.15
4984 5304 8.728596 TTTTCCCCTTTCCATTACTTTCATAA 57.271 30.769 0.00 0.00 0.00 1.90
4985 5305 7.712204 TTCCCCTTTCCATTACTTTCATAAC 57.288 36.000 0.00 0.00 0.00 1.89
4986 5306 6.795590 TCCCCTTTCCATTACTTTCATAACA 58.204 36.000 0.00 0.00 0.00 2.41
4987 5307 6.889722 TCCCCTTTCCATTACTTTCATAACAG 59.110 38.462 0.00 0.00 0.00 3.16
4988 5308 6.889722 CCCCTTTCCATTACTTTCATAACAGA 59.110 38.462 0.00 0.00 0.00 3.41
4989 5309 7.396055 CCCCTTTCCATTACTTTCATAACAGAA 59.604 37.037 0.00 0.00 0.00 3.02
4990 5310 8.802267 CCCTTTCCATTACTTTCATAACAGAAA 58.198 33.333 0.00 0.00 36.21 2.52
5004 5324 8.722480 TCATAACAGAAATACATTGTCTCAGG 57.278 34.615 0.00 0.00 0.00 3.86
5005 5325 8.539544 TCATAACAGAAATACATTGTCTCAGGA 58.460 33.333 0.00 0.00 0.00 3.86
5006 5326 8.824781 CATAACAGAAATACATTGTCTCAGGAG 58.175 37.037 0.00 0.00 0.00 3.69
5007 5327 6.365970 ACAGAAATACATTGTCTCAGGAGT 57.634 37.500 0.00 0.00 0.00 3.85
5008 5328 6.773638 ACAGAAATACATTGTCTCAGGAGTT 58.226 36.000 0.00 0.00 0.00 3.01
5009 5329 6.652481 ACAGAAATACATTGTCTCAGGAGTTG 59.348 38.462 0.00 0.00 0.00 3.16
5010 5330 6.875726 CAGAAATACATTGTCTCAGGAGTTGA 59.124 38.462 0.00 0.00 0.00 3.18
5011 5331 7.388776 CAGAAATACATTGTCTCAGGAGTTGAA 59.611 37.037 0.00 0.00 34.81 2.69
5012 5332 7.939039 AGAAATACATTGTCTCAGGAGTTGAAA 59.061 33.333 0.00 0.00 34.81 2.69
5013 5333 7.440523 AATACATTGTCTCAGGAGTTGAAAC 57.559 36.000 0.00 0.00 34.81 2.78
5014 5334 5.041191 ACATTGTCTCAGGAGTTGAAACT 57.959 39.130 0.00 0.00 43.16 2.66
5015 5335 6.174720 ACATTGTCTCAGGAGTTGAAACTA 57.825 37.500 0.00 0.00 39.88 2.24
5016 5336 6.773638 ACATTGTCTCAGGAGTTGAAACTAT 58.226 36.000 0.00 0.00 39.88 2.12
5017 5337 6.876257 ACATTGTCTCAGGAGTTGAAACTATC 59.124 38.462 0.00 0.00 39.88 2.08
5018 5338 6.419484 TTGTCTCAGGAGTTGAAACTATCA 57.581 37.500 0.00 0.00 39.88 2.15
5019 5339 6.419484 TGTCTCAGGAGTTGAAACTATCAA 57.581 37.500 0.00 0.00 45.71 2.57
5029 5349 5.772393 TTGAAACTATCAAGGCTAGGGAA 57.228 39.130 0.00 0.00 43.08 3.97
5030 5350 5.772393 TGAAACTATCAAGGCTAGGGAAA 57.228 39.130 0.00 0.00 34.30 3.13
5031 5351 5.745227 TGAAACTATCAAGGCTAGGGAAAG 58.255 41.667 0.00 0.00 34.30 2.62
5032 5352 5.487488 TGAAACTATCAAGGCTAGGGAAAGA 59.513 40.000 0.00 0.00 34.30 2.52
5033 5353 6.012858 TGAAACTATCAAGGCTAGGGAAAGAA 60.013 38.462 0.00 0.00 34.30 2.52
5034 5354 5.622346 ACTATCAAGGCTAGGGAAAGAAG 57.378 43.478 0.00 0.00 0.00 2.85
5035 5355 5.281314 ACTATCAAGGCTAGGGAAAGAAGA 58.719 41.667 0.00 0.00 0.00 2.87
5036 5356 5.726793 ACTATCAAGGCTAGGGAAAGAAGAA 59.273 40.000 0.00 0.00 0.00 2.52
5037 5357 4.993705 TCAAGGCTAGGGAAAGAAGAAA 57.006 40.909 0.00 0.00 0.00 2.52
5038 5358 5.319043 TCAAGGCTAGGGAAAGAAGAAAA 57.681 39.130 0.00 0.00 0.00 2.29
5039 5359 5.316987 TCAAGGCTAGGGAAAGAAGAAAAG 58.683 41.667 0.00 0.00 0.00 2.27
5040 5360 3.691575 AGGCTAGGGAAAGAAGAAAAGC 58.308 45.455 0.00 0.00 0.00 3.51
5041 5361 2.420372 GGCTAGGGAAAGAAGAAAAGCG 59.580 50.000 0.00 0.00 0.00 4.68
5042 5362 3.335579 GCTAGGGAAAGAAGAAAAGCGA 58.664 45.455 0.00 0.00 0.00 4.93
5043 5363 3.372514 GCTAGGGAAAGAAGAAAAGCGAG 59.627 47.826 0.00 0.00 0.00 5.03
5044 5364 3.493767 AGGGAAAGAAGAAAAGCGAGT 57.506 42.857 0.00 0.00 0.00 4.18
5045 5365 3.821748 AGGGAAAGAAGAAAAGCGAGTT 58.178 40.909 0.00 0.00 0.00 3.01
5046 5366 3.815962 AGGGAAAGAAGAAAAGCGAGTTC 59.184 43.478 0.00 0.00 0.00 3.01
5047 5367 3.564225 GGGAAAGAAGAAAAGCGAGTTCA 59.436 43.478 0.00 0.00 0.00 3.18
5048 5368 4.319839 GGGAAAGAAGAAAAGCGAGTTCAG 60.320 45.833 0.00 0.00 0.00 3.02
5049 5369 4.511826 GGAAAGAAGAAAAGCGAGTTCAGA 59.488 41.667 0.00 0.00 0.00 3.27
5050 5370 5.333721 GGAAAGAAGAAAAGCGAGTTCAGAG 60.334 44.000 0.00 0.00 0.00 3.35
5051 5371 3.063485 AGAAGAAAAGCGAGTTCAGAGC 58.937 45.455 0.00 0.00 0.00 4.09
5052 5372 2.533266 AGAAAAGCGAGTTCAGAGCA 57.467 45.000 0.00 0.00 0.00 4.26
5053 5373 2.838736 AGAAAAGCGAGTTCAGAGCAA 58.161 42.857 0.00 0.00 0.00 3.91
5054 5374 2.545946 AGAAAAGCGAGTTCAGAGCAAC 59.454 45.455 0.00 0.00 0.00 4.17
5055 5375 1.953559 AAAGCGAGTTCAGAGCAACA 58.046 45.000 0.00 0.00 0.00 3.33
5056 5376 2.175878 AAGCGAGTTCAGAGCAACAT 57.824 45.000 0.00 0.00 0.00 2.71
5057 5377 1.719600 AGCGAGTTCAGAGCAACATC 58.280 50.000 0.00 0.00 0.00 3.06
5058 5378 1.001293 AGCGAGTTCAGAGCAACATCA 59.999 47.619 0.00 0.00 0.00 3.07
5059 5379 1.392853 GCGAGTTCAGAGCAACATCAG 59.607 52.381 0.00 0.00 0.00 2.90
5060 5380 1.998315 CGAGTTCAGAGCAACATCAGG 59.002 52.381 0.00 0.00 0.00 3.86
5061 5381 2.353109 CGAGTTCAGAGCAACATCAGGA 60.353 50.000 0.00 0.00 0.00 3.86
5062 5382 3.668447 GAGTTCAGAGCAACATCAGGAA 58.332 45.455 0.00 0.00 0.00 3.36
5063 5383 3.672808 AGTTCAGAGCAACATCAGGAAG 58.327 45.455 0.00 0.00 0.00 3.46
5064 5384 2.105006 TCAGAGCAACATCAGGAAGC 57.895 50.000 0.00 0.00 0.00 3.86
5065 5385 1.093159 CAGAGCAACATCAGGAAGCC 58.907 55.000 0.00 0.00 0.00 4.35
5066 5386 0.034670 AGAGCAACATCAGGAAGCCC 60.035 55.000 0.00 0.00 0.00 5.19
5067 5387 0.322816 GAGCAACATCAGGAAGCCCA 60.323 55.000 0.00 0.00 33.88 5.36
5068 5388 0.610232 AGCAACATCAGGAAGCCCAC 60.610 55.000 0.00 0.00 33.88 4.61
5069 5389 1.598701 GCAACATCAGGAAGCCCACC 61.599 60.000 0.00 0.00 33.88 4.61
5070 5390 0.251297 CAACATCAGGAAGCCCACCA 60.251 55.000 0.00 0.00 33.88 4.17
5071 5391 0.706433 AACATCAGGAAGCCCACCAT 59.294 50.000 0.00 0.00 33.88 3.55
5072 5392 0.257039 ACATCAGGAAGCCCACCATC 59.743 55.000 0.00 0.00 33.88 3.51
5073 5393 0.549950 CATCAGGAAGCCCACCATCT 59.450 55.000 0.00 0.00 33.88 2.90
5074 5394 0.549950 ATCAGGAAGCCCACCATCTG 59.450 55.000 0.00 0.00 33.88 2.90
5075 5395 1.751927 CAGGAAGCCCACCATCTGC 60.752 63.158 0.00 0.00 33.88 4.26
5076 5396 2.825836 GGAAGCCCACCATCTGCG 60.826 66.667 0.00 0.00 0.00 5.18
5077 5397 3.512516 GAAGCCCACCATCTGCGC 61.513 66.667 0.00 0.00 0.00 6.09
5081 5401 4.415150 CCCACCATCTGCGCCTGT 62.415 66.667 4.18 0.00 0.00 4.00
5082 5402 2.821366 CCACCATCTGCGCCTGTC 60.821 66.667 4.18 0.00 0.00 3.51
5083 5403 2.046988 CACCATCTGCGCCTGTCA 60.047 61.111 4.18 0.00 0.00 3.58
5084 5404 1.450848 CACCATCTGCGCCTGTCAT 60.451 57.895 4.18 0.00 0.00 3.06
5085 5405 1.153289 ACCATCTGCGCCTGTCATC 60.153 57.895 4.18 0.00 0.00 2.92
5086 5406 1.153309 CCATCTGCGCCTGTCATCA 60.153 57.895 4.18 0.00 0.00 3.07
5087 5407 1.158484 CCATCTGCGCCTGTCATCAG 61.158 60.000 4.18 0.00 41.01 2.90
5127 5447 8.815565 TTATGGTTTCTGGCACAAGAATAATA 57.184 30.769 0.00 0.00 38.70 0.98
5271 5592 6.095160 ACAATCCATCTCTCATTTCAAGCTTC 59.905 38.462 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 178 5.606348 ACTAGAACTAGCTAGCATTTGCT 57.394 39.130 20.91 10.34 44.41 3.91
150 226 3.819368 TGATGCTCCTGTTGTTTCTGAA 58.181 40.909 0.00 0.00 0.00 3.02
205 285 0.099082 ACAGCGTTACGAGCTCTAGC 59.901 55.000 9.62 9.57 44.06 3.42
231 311 2.159014 TGTCTGATAATTTAGCCGCGGT 60.159 45.455 28.70 16.08 0.00 5.68
232 312 2.479837 TGTCTGATAATTTAGCCGCGG 58.520 47.619 24.05 24.05 0.00 6.46
234 314 5.931441 AGATTGTCTGATAATTTAGCCGC 57.069 39.130 1.06 0.00 0.00 6.53
235 315 8.867935 CAGATAGATTGTCTGATAATTTAGCCG 58.132 37.037 8.58 0.00 44.57 5.52
262 342 8.807948 ATGCATCTAACATAGTTTTACCACTT 57.192 30.769 0.00 0.00 0.00 3.16
269 349 6.677920 GCCGTTGATGCATCTAACATAGTTTT 60.678 38.462 26.32 0.00 0.00 2.43
285 365 1.854743 CAGATACTCGTGCCGTTGATG 59.145 52.381 0.00 0.00 0.00 3.07
289 369 2.334838 GTTTCAGATACTCGTGCCGTT 58.665 47.619 0.00 0.00 0.00 4.44
296 376 6.210287 ACTTTCTAGGGTTTCAGATACTCG 57.790 41.667 0.00 0.00 0.00 4.18
303 383 4.828072 AGGCTACTTTCTAGGGTTTCAG 57.172 45.455 0.00 0.00 0.00 3.02
363 443 2.096220 AGCTCGACGAGAAGTGAGTA 57.904 50.000 28.43 0.00 33.50 2.59
380 460 0.174617 CGAGGAGGAGACCAAGAAGC 59.825 60.000 0.00 0.00 0.00 3.86
549 629 2.731374 CGCCTCCTCCTCGAATCC 59.269 66.667 0.00 0.00 0.00 3.01
815 900 7.492669 CAGTAATTAAATTCTTCTGCTCTCGGA 59.507 37.037 0.00 0.00 0.00 4.55
819 904 6.319911 GGCCAGTAATTAAATTCTTCTGCTCT 59.680 38.462 0.00 0.00 0.00 4.09
848 933 5.467399 CGTGGAACCAGAATGTAAACAAGTA 59.533 40.000 0.00 0.00 0.00 2.24
875 960 2.237751 CGGACGGTGCGGATCAATC 61.238 63.158 14.59 0.00 0.00 2.67
879 964 0.529119 ATAAACGGACGGTGCGGATC 60.529 55.000 25.31 0.00 34.75 3.36
896 981 2.224042 CCAGCACAGCCGTTAGATCATA 60.224 50.000 0.00 0.00 0.00 2.15
897 982 1.473965 CCAGCACAGCCGTTAGATCAT 60.474 52.381 0.00 0.00 0.00 2.45
898 983 0.108186 CCAGCACAGCCGTTAGATCA 60.108 55.000 0.00 0.00 0.00 2.92
1267 1353 2.419198 GCGGCGATCATCTCCACT 59.581 61.111 12.98 0.00 0.00 4.00
1658 1753 5.992217 AGTGAACAACTAGAGAACATTGGTC 59.008 40.000 0.00 0.00 38.89 4.02
1716 1811 3.191371 CAGTCAAAACAACCTATGGCTCC 59.809 47.826 0.00 0.00 0.00 4.70
1717 1812 3.821033 ACAGTCAAAACAACCTATGGCTC 59.179 43.478 0.00 0.00 0.00 4.70
1723 1819 5.492895 TCACTCAACAGTCAAAACAACCTA 58.507 37.500 0.00 0.00 0.00 3.08
1730 1826 4.515191 GGCTACATCACTCAACAGTCAAAA 59.485 41.667 0.00 0.00 0.00 2.44
1731 1827 4.065088 GGCTACATCACTCAACAGTCAAA 58.935 43.478 0.00 0.00 0.00 2.69
1732 1828 3.070878 TGGCTACATCACTCAACAGTCAA 59.929 43.478 0.00 0.00 0.00 3.18
1733 1829 2.632512 TGGCTACATCACTCAACAGTCA 59.367 45.455 0.00 0.00 0.00 3.41
1734 1830 3.319137 TGGCTACATCACTCAACAGTC 57.681 47.619 0.00 0.00 0.00 3.51
1735 1831 3.988976 ATGGCTACATCACTCAACAGT 57.011 42.857 0.00 0.00 29.20 3.55
1736 1832 4.758688 TGTATGGCTACATCACTCAACAG 58.241 43.478 0.00 0.00 38.53 3.16
1885 1982 0.317160 CCTTATCCGCGCTATGTCCA 59.683 55.000 5.56 0.00 0.00 4.02
1912 2009 7.888021 TCAAGATGAAATAGTTTCTTGGGCTAA 59.112 33.333 14.21 0.00 43.27 3.09
2006 2103 2.912771 TGAACTCGACCTGCAAAAGAA 58.087 42.857 0.00 0.00 0.00 2.52
2244 2350 9.258629 AGATTAGATGTTTCATGGGAAAATCAA 57.741 29.630 12.51 7.41 44.18 2.57
2342 2451 3.374058 CACCAATTTCTAAGCGGGTACAG 59.626 47.826 0.00 0.00 0.00 2.74
2462 2574 1.334869 GGCCGATGAGCAATAACCTTG 59.665 52.381 0.00 0.00 0.00 3.61
2499 2611 7.113544 GCTACAGTTCAAGCAACAAGTTAATTC 59.886 37.037 0.00 0.00 38.63 2.17
2500 2612 6.918022 GCTACAGTTCAAGCAACAAGTTAATT 59.082 34.615 0.00 0.00 38.63 1.40
2504 2621 3.947834 AGCTACAGTTCAAGCAACAAGTT 59.052 39.130 0.00 0.00 41.32 2.66
2505 2622 3.545703 AGCTACAGTTCAAGCAACAAGT 58.454 40.909 0.00 0.00 41.32 3.16
2543 2663 9.809096 CAAGTCATAACTCAAGCTAGAAGATAA 57.191 33.333 0.00 0.00 33.48 1.75
2545 2665 6.760770 GCAAGTCATAACTCAAGCTAGAAGAT 59.239 38.462 0.00 0.00 33.48 2.40
2629 2750 8.603898 TCTCAACTCCTACATTAGGTAAATCA 57.396 34.615 0.00 0.00 46.32 2.57
2644 2765 6.201591 ACTTTCCATATCTCTCTCAACTCCT 58.798 40.000 0.00 0.00 0.00 3.69
2886 3009 5.825679 AGTTTCTATACCTGCAACACAACAA 59.174 36.000 0.00 0.00 0.00 2.83
2939 3062 1.303309 CCATCGACAGAATCCTTGCC 58.697 55.000 0.00 0.00 0.00 4.52
3095 3218 2.441532 CCGGCCTCTCGGGTTCTA 60.442 66.667 0.00 0.00 45.78 2.10
3104 3227 1.580059 TTACCTGAATTCCGGCCTCT 58.420 50.000 15.22 0.00 0.00 3.69
3110 3233 6.942576 AGAATCCCATATTTACCTGAATTCCG 59.057 38.462 2.27 0.00 0.00 4.30
3149 3272 9.772973 ACCTCGTTAATCAATTATAAGCACATA 57.227 29.630 0.00 0.00 0.00 2.29
3173 3296 5.295540 GCACAAAGAGAATAATGAGGAGACC 59.704 44.000 0.00 0.00 0.00 3.85
3176 3299 4.872691 ACGCACAAAGAGAATAATGAGGAG 59.127 41.667 0.00 0.00 0.00 3.69
3190 3313 2.002586 CCTGTATGGAGACGCACAAAG 58.997 52.381 0.00 0.00 38.35 2.77
3191 3314 1.621317 TCCTGTATGGAGACGCACAAA 59.379 47.619 0.00 0.00 40.56 2.83
3205 3328 7.674120 CCTGATCTTGTGATGAATATCCTGTA 58.326 38.462 0.00 0.00 32.19 2.74
3215 3338 2.190538 TCAGGCCTGATCTTGTGATGA 58.809 47.619 32.00 4.94 34.14 2.92
3275 3398 1.073923 GAAAGAAAGGTCTCCCAGCCA 59.926 52.381 0.00 0.00 30.70 4.75
3293 3416 3.314357 CCTGTCGTGTATCCTCATACGAA 59.686 47.826 0.00 0.00 45.60 3.85
3333 3456 2.012673 CCAGCAGTGAACTGAATAGGC 58.987 52.381 14.58 0.00 46.59 3.93
3342 3465 1.896220 TTCACATCCCAGCAGTGAAC 58.104 50.000 0.00 0.00 44.60 3.18
3374 3497 5.220931 GCCTATTCAGGAACACAAGCATAAG 60.221 44.000 0.00 0.00 45.91 1.73
3381 3504 7.716799 AAAATATGCCTATTCAGGAACACAA 57.283 32.000 0.00 0.00 45.91 3.33
3407 3532 4.285020 TGCATAAACCATAGCATTGGGAA 58.715 39.130 9.48 0.00 41.35 3.97
3408 3533 3.908476 TGCATAAACCATAGCATTGGGA 58.092 40.909 9.48 0.00 41.35 4.37
3409 3534 4.669206 TTGCATAAACCATAGCATTGGG 57.331 40.909 9.48 0.00 41.35 4.12
3410 3535 6.203338 GGAAATTGCATAAACCATAGCATTGG 59.797 38.462 3.55 3.55 42.82 3.16
3411 3536 6.987992 AGGAAATTGCATAAACCATAGCATTG 59.012 34.615 0.00 0.00 36.80 2.82
3412 3537 7.128234 AGGAAATTGCATAAACCATAGCATT 57.872 32.000 0.00 0.00 36.80 3.56
3413 3538 6.736110 AGGAAATTGCATAAACCATAGCAT 57.264 33.333 0.00 0.00 36.80 3.79
3414 3539 6.543430 AAGGAAATTGCATAAACCATAGCA 57.457 33.333 0.00 0.00 34.79 3.49
3415 3540 7.848223 AAAAGGAAATTGCATAAACCATAGC 57.152 32.000 0.00 0.00 0.00 2.97
3423 3548 7.158021 CACCCAAGTAAAAGGAAATTGCATAA 58.842 34.615 0.00 0.00 0.00 1.90
3424 3549 6.295575 CCACCCAAGTAAAAGGAAATTGCATA 60.296 38.462 0.00 0.00 0.00 3.14
3425 3550 5.512921 CCACCCAAGTAAAAGGAAATTGCAT 60.513 40.000 0.00 0.00 0.00 3.96
3426 3551 4.202305 CCACCCAAGTAAAAGGAAATTGCA 60.202 41.667 0.00 0.00 0.00 4.08
3427 3552 4.202315 ACCACCCAAGTAAAAGGAAATTGC 60.202 41.667 0.00 0.00 0.00 3.56
3460 3585 9.569122 AAGGCAATAACTAAGTAGAAAAGTTCA 57.431 29.630 0.00 0.00 35.23 3.18
3461 3586 9.827411 CAAGGCAATAACTAAGTAGAAAAGTTC 57.173 33.333 0.00 0.00 35.23 3.01
3462 3587 9.350951 ACAAGGCAATAACTAAGTAGAAAAGTT 57.649 29.630 0.00 0.00 37.27 2.66
3463 3588 8.919777 ACAAGGCAATAACTAAGTAGAAAAGT 57.080 30.769 0.00 0.00 0.00 2.66
3464 3589 9.612620 CAACAAGGCAATAACTAAGTAGAAAAG 57.387 33.333 0.00 0.00 0.00 2.27
3467 3593 7.228590 ACCAACAAGGCAATAACTAAGTAGAA 58.771 34.615 0.00 0.00 43.14 2.10
3470 3596 6.880529 GGTACCAACAAGGCAATAACTAAGTA 59.119 38.462 7.15 0.00 43.14 2.24
3473 3599 5.632118 TGGTACCAACAAGGCAATAACTAA 58.368 37.500 13.60 0.00 43.14 2.24
3502 3637 8.194104 CACTATACAAGCAGAACAGAGTAAGAT 58.806 37.037 0.00 0.00 0.00 2.40
3504 3639 7.539436 TCACTATACAAGCAGAACAGAGTAAG 58.461 38.462 0.00 0.00 0.00 2.34
3529 3666 2.103941 GCCAGTAGCAATCTAAGGAGCT 59.896 50.000 0.00 0.00 42.97 4.09
3550 3687 5.784177 AGACCCAGTGATAAACTATATGCG 58.216 41.667 0.00 0.00 36.83 4.73
3556 3693 6.075984 GGATAGGAGACCCAGTGATAAACTA 58.924 44.000 0.00 0.00 36.83 2.24
3575 3712 6.662414 TGTTACGCAAGATCAAAAGGATAG 57.338 37.500 0.00 0.00 43.62 2.08
3602 3739 9.620660 GTAGGATTTAGAAAAAGAAATTGCGAA 57.379 29.630 0.00 0.00 0.00 4.70
3605 3742 9.358872 CCTGTAGGATTTAGAAAAAGAAATTGC 57.641 33.333 0.00 0.00 37.39 3.56
3717 3854 3.571571 TGTTCCGTAGACATGAAGTTCG 58.428 45.455 0.00 0.00 0.00 3.95
3800 3937 4.511826 GGGCAACTACAACATATAGCTGTC 59.488 45.833 0.00 0.00 0.00 3.51
3804 3941 4.703897 TGAGGGCAACTACAACATATAGC 58.296 43.478 0.00 0.00 0.00 2.97
3809 3946 2.616510 GCTCTGAGGGCAACTACAACAT 60.617 50.000 0.00 0.00 0.00 2.71
3813 3950 0.898320 GAGCTCTGAGGGCAACTACA 59.102 55.000 7.24 0.00 0.00 2.74
3821 3958 2.317973 TGATCATCTGAGCTCTGAGGG 58.682 52.381 27.80 21.16 0.00 4.30
3823 3960 4.768448 AGGTATGATCATCTGAGCTCTGAG 59.232 45.833 24.96 17.47 0.00 3.35
3824 3961 4.523558 CAGGTATGATCATCTGAGCTCTGA 59.476 45.833 23.50 23.50 0.00 3.27
3825 3962 4.322123 CCAGGTATGATCATCTGAGCTCTG 60.322 50.000 20.59 15.06 0.00 3.35
3826 3963 3.833650 CCAGGTATGATCATCTGAGCTCT 59.166 47.826 20.59 0.00 0.00 4.09
3827 3964 3.831333 TCCAGGTATGATCATCTGAGCTC 59.169 47.826 20.59 6.82 0.00 4.09
3828 3965 3.854437 TCCAGGTATGATCATCTGAGCT 58.146 45.455 20.59 12.75 0.00 4.09
3829 3966 4.613925 TTCCAGGTATGATCATCTGAGC 57.386 45.455 20.59 10.93 0.00 4.26
3834 3971 6.315642 CAGCATGTATTCCAGGTATGATCATC 59.684 42.308 12.53 4.10 0.00 2.92
3874 4012 5.643777 AGTATTCATTCAGTAACTGTGGCAC 59.356 40.000 11.55 11.55 32.61 5.01
3875 4013 5.804639 AGTATTCATTCAGTAACTGTGGCA 58.195 37.500 0.00 0.00 32.61 4.92
3876 4014 6.546395 CAAGTATTCATTCAGTAACTGTGGC 58.454 40.000 0.00 0.00 32.61 5.01
3877 4015 6.372659 AGCAAGTATTCATTCAGTAACTGTGG 59.627 38.462 0.00 0.00 32.61 4.17
3878 4016 7.369803 AGCAAGTATTCATTCAGTAACTGTG 57.630 36.000 0.00 0.00 32.61 3.66
3884 4045 9.665719 TCATGTTTAGCAAGTATTCATTCAGTA 57.334 29.630 0.00 0.00 0.00 2.74
3905 4066 6.593770 TGATAAAAGCGTAAGTGTGATCATGT 59.406 34.615 0.00 0.00 41.68 3.21
3920 4081 6.253298 CCAACAATTACACCATGATAAAAGCG 59.747 38.462 0.00 0.00 0.00 4.68
4203 4364 2.163412 TGCCGTTTGATGCTGAAATACC 59.837 45.455 0.00 0.00 0.00 2.73
4249 4410 9.874215 CATTACACTTAACATCATGATCACATC 57.126 33.333 4.86 0.00 34.15 3.06
4306 4467 4.646492 AGTCTGAAGAAGGCAAACACAATT 59.354 37.500 0.00 0.00 30.52 2.32
4307 4468 4.210331 AGTCTGAAGAAGGCAAACACAAT 58.790 39.130 0.00 0.00 30.52 2.71
4347 4508 6.324819 CACCATTCTGCTAAAAGGTGTAATG 58.675 40.000 14.18 0.00 41.11 1.90
4398 4563 4.100498 GTCTGTATTCGGAAGGGGTATTCA 59.900 45.833 0.00 0.00 0.00 2.57
4399 4564 4.629092 GTCTGTATTCGGAAGGGGTATTC 58.371 47.826 0.00 0.00 0.00 1.75
4400 4565 3.069158 CGTCTGTATTCGGAAGGGGTATT 59.931 47.826 0.00 0.00 0.00 1.89
4401 4566 2.626743 CGTCTGTATTCGGAAGGGGTAT 59.373 50.000 0.00 0.00 0.00 2.73
4402 4567 2.026641 CGTCTGTATTCGGAAGGGGTA 58.973 52.381 0.00 0.00 0.00 3.69
4403 4568 0.822164 CGTCTGTATTCGGAAGGGGT 59.178 55.000 0.00 0.00 0.00 4.95
4404 4569 1.108776 TCGTCTGTATTCGGAAGGGG 58.891 55.000 0.00 0.00 0.00 4.79
4405 4570 1.533338 CGTCGTCTGTATTCGGAAGGG 60.533 57.143 0.00 0.00 0.00 3.95
4406 4571 1.399440 TCGTCGTCTGTATTCGGAAGG 59.601 52.381 0.00 0.00 0.00 3.46
4407 4572 2.819422 TCGTCGTCTGTATTCGGAAG 57.181 50.000 0.00 0.00 0.00 3.46
4408 4573 3.770263 AATCGTCGTCTGTATTCGGAA 57.230 42.857 0.00 0.00 0.00 4.30
4409 4574 3.770263 AAATCGTCGTCTGTATTCGGA 57.230 42.857 0.00 0.00 0.00 4.55
4410 4575 4.595116 ACTAAATCGTCGTCTGTATTCGG 58.405 43.478 0.00 0.00 0.00 4.30
4419 4584 8.108782 CCTTTCTCAAATAACTAAATCGTCGTC 58.891 37.037 0.00 0.00 0.00 4.20
4449 4614 1.777517 AATAGGGGCCATCCATCCAT 58.222 50.000 4.39 0.00 37.22 3.41
4454 4619 0.636101 AGCAAAATAGGGGCCATCCA 59.364 50.000 4.39 0.00 37.22 3.41
4515 4680 8.461222 TGAATTACATGCAAGACTTTAAGATGG 58.539 33.333 0.00 0.00 0.00 3.51
4517 4682 9.453572 TCTGAATTACATGCAAGACTTTAAGAT 57.546 29.630 0.00 0.00 0.00 2.40
4519 4684 8.939929 TCTCTGAATTACATGCAAGACTTTAAG 58.060 33.333 0.00 0.00 0.00 1.85
4521 4686 8.886719 CATCTCTGAATTACATGCAAGACTTTA 58.113 33.333 0.00 0.00 0.00 1.85
4522 4687 7.148120 CCATCTCTGAATTACATGCAAGACTTT 60.148 37.037 0.00 0.00 0.00 2.66
4530 4696 4.906065 TTGCCATCTCTGAATTACATGC 57.094 40.909 0.00 0.00 0.00 4.06
4540 4706 6.860080 AGACATGTTTTTATTGCCATCTCTG 58.140 36.000 0.00 0.00 0.00 3.35
4547 4713 9.855021 ACTTATTGTAGACATGTTTTTATTGCC 57.145 29.630 0.00 0.00 0.00 4.52
4568 4734 9.427821 TGAAGAGAAGGCTAAGAGATAACTTAT 57.572 33.333 0.00 0.00 32.91 1.73
4569 4735 8.824756 TGAAGAGAAGGCTAAGAGATAACTTA 57.175 34.615 0.00 0.00 0.00 2.24
4570 4736 7.726033 TGAAGAGAAGGCTAAGAGATAACTT 57.274 36.000 0.00 0.00 0.00 2.66
4571 4737 7.726033 TTGAAGAGAAGGCTAAGAGATAACT 57.274 36.000 0.00 0.00 0.00 2.24
4600 4766 7.432148 TTCACCATGTTTCTAGGAATAGCTA 57.568 36.000 0.00 0.00 0.00 3.32
4624 4790 9.520515 AGAGATGGTCTTTTAACACAATATGTT 57.479 29.630 0.00 0.00 43.35 2.71
4713 4879 7.325694 ACGGTGCTATTTTACTAGTGTTATGT 58.674 34.615 5.39 0.00 0.00 2.29
4717 4883 5.993441 ACAACGGTGCTATTTTACTAGTGTT 59.007 36.000 5.39 0.00 0.00 3.32
4719 4885 6.587226 TGTACAACGGTGCTATTTTACTAGTG 59.413 38.462 5.39 0.00 0.00 2.74
4723 4889 5.163794 GCATGTACAACGGTGCTATTTTACT 60.164 40.000 11.12 0.00 32.08 2.24
4724 4890 5.025826 GCATGTACAACGGTGCTATTTTAC 58.974 41.667 11.12 0.00 32.08 2.01
4726 4892 3.504134 TGCATGTACAACGGTGCTATTTT 59.496 39.130 17.52 0.00 34.68 1.82
4727 4893 3.078097 TGCATGTACAACGGTGCTATTT 58.922 40.909 17.52 0.00 34.68 1.40
4728 4894 2.418628 GTGCATGTACAACGGTGCTATT 59.581 45.455 17.52 0.00 34.68 1.73
4737 4903 1.668751 CCATACGGGTGCATGTACAAC 59.331 52.381 16.11 7.00 0.00 3.32
4751 4917 0.808060 TGGCGCATACACACCATACG 60.808 55.000 10.83 0.00 0.00 3.06
4752 4918 1.374560 TTGGCGCATACACACCATAC 58.625 50.000 10.83 0.00 30.85 2.39
4754 4920 0.525761 GTTTGGCGCATACACACCAT 59.474 50.000 10.83 0.00 30.85 3.55
4755 4921 0.536233 AGTTTGGCGCATACACACCA 60.536 50.000 10.83 0.00 0.00 4.17
4756 4922 0.109781 CAGTTTGGCGCATACACACC 60.110 55.000 10.83 0.00 0.00 4.16
4780 5098 3.113322 CGACGACTTCTCAACAAACTGA 58.887 45.455 0.00 0.00 0.00 3.41
4797 5115 4.611943 AGTGATCATTCATTACTCCGACG 58.388 43.478 0.00 0.00 33.56 5.12
4798 5116 6.153067 CCTAGTGATCATTCATTACTCCGAC 58.847 44.000 0.00 0.00 33.44 4.79
4913 5233 2.158900 AGGAACCATAAGCTCCACGATG 60.159 50.000 0.00 0.00 0.00 3.84
4945 5265 2.171659 GGGGAAAAGCCTGGTTCAAAAA 59.828 45.455 0.00 0.00 36.66 1.94
4946 5266 1.765904 GGGGAAAAGCCTGGTTCAAAA 59.234 47.619 0.00 0.00 36.66 2.44
4947 5267 1.062505 AGGGGAAAAGCCTGGTTCAAA 60.063 47.619 0.00 0.00 36.66 2.69
4948 5268 0.560688 AGGGGAAAAGCCTGGTTCAA 59.439 50.000 0.00 0.00 36.66 2.69
4949 5269 0.560688 AAGGGGAAAAGCCTGGTTCA 59.439 50.000 0.00 0.00 36.66 3.18
4950 5270 1.618837 GAAAGGGGAAAAGCCTGGTTC 59.381 52.381 0.00 0.00 36.66 3.62
4951 5271 1.717032 GAAAGGGGAAAAGCCTGGTT 58.283 50.000 0.00 0.00 36.66 3.67
4952 5272 0.178932 GGAAAGGGGAAAAGCCTGGT 60.179 55.000 0.00 0.00 36.66 4.00
4953 5273 0.178935 TGGAAAGGGGAAAAGCCTGG 60.179 55.000 0.00 0.00 36.66 4.45
4954 5274 1.942776 ATGGAAAGGGGAAAAGCCTG 58.057 50.000 0.00 0.00 36.66 4.85
4955 5275 2.721585 AATGGAAAGGGGAAAAGCCT 57.278 45.000 0.00 0.00 36.66 4.58
4956 5276 3.441101 AGTAATGGAAAGGGGAAAAGCC 58.559 45.455 0.00 0.00 0.00 4.35
4957 5277 5.011635 TGAAAGTAATGGAAAGGGGAAAAGC 59.988 40.000 0.00 0.00 0.00 3.51
4958 5278 6.664428 TGAAAGTAATGGAAAGGGGAAAAG 57.336 37.500 0.00 0.00 0.00 2.27
4959 5279 8.590204 GTTATGAAAGTAATGGAAAGGGGAAAA 58.410 33.333 0.00 0.00 0.00 2.29
4960 5280 7.730784 TGTTATGAAAGTAATGGAAAGGGGAAA 59.269 33.333 0.00 0.00 0.00 3.13
4961 5281 7.242359 TGTTATGAAAGTAATGGAAAGGGGAA 58.758 34.615 0.00 0.00 0.00 3.97
4962 5282 6.795590 TGTTATGAAAGTAATGGAAAGGGGA 58.204 36.000 0.00 0.00 0.00 4.81
4963 5283 6.889722 TCTGTTATGAAAGTAATGGAAAGGGG 59.110 38.462 0.00 0.00 0.00 4.79
4964 5284 7.938140 TCTGTTATGAAAGTAATGGAAAGGG 57.062 36.000 0.00 0.00 0.00 3.95
4978 5298 9.166173 CCTGAGACAATGTATTTCTGTTATGAA 57.834 33.333 0.00 0.00 0.00 2.57
4979 5299 8.539544 TCCTGAGACAATGTATTTCTGTTATGA 58.460 33.333 0.00 0.00 0.00 2.15
4980 5300 8.722480 TCCTGAGACAATGTATTTCTGTTATG 57.278 34.615 0.00 0.00 0.00 1.90
4981 5301 8.543774 ACTCCTGAGACAATGTATTTCTGTTAT 58.456 33.333 0.22 0.00 0.00 1.89
4982 5302 7.907389 ACTCCTGAGACAATGTATTTCTGTTA 58.093 34.615 0.22 0.00 0.00 2.41
4983 5303 6.773638 ACTCCTGAGACAATGTATTTCTGTT 58.226 36.000 0.22 0.00 0.00 3.16
4984 5304 6.365970 ACTCCTGAGACAATGTATTTCTGT 57.634 37.500 0.22 0.00 0.00 3.41
4985 5305 6.875726 TCAACTCCTGAGACAATGTATTTCTG 59.124 38.462 0.22 0.00 0.00 3.02
4986 5306 7.009179 TCAACTCCTGAGACAATGTATTTCT 57.991 36.000 0.22 0.00 0.00 2.52
4987 5307 7.672983 TTCAACTCCTGAGACAATGTATTTC 57.327 36.000 0.22 0.00 34.81 2.17
4988 5308 7.721399 AGTTTCAACTCCTGAGACAATGTATTT 59.279 33.333 0.22 0.00 40.78 1.40
4989 5309 7.227156 AGTTTCAACTCCTGAGACAATGTATT 58.773 34.615 0.22 0.00 40.78 1.89
4990 5310 6.773638 AGTTTCAACTCCTGAGACAATGTAT 58.226 36.000 0.22 0.00 40.78 2.29
4991 5311 6.174720 AGTTTCAACTCCTGAGACAATGTA 57.825 37.500 0.22 0.00 40.78 2.29
4992 5312 5.041191 AGTTTCAACTCCTGAGACAATGT 57.959 39.130 0.22 0.00 40.78 2.71
4993 5313 6.875726 TGATAGTTTCAACTCCTGAGACAATG 59.124 38.462 0.22 0.00 40.78 2.82
4994 5314 7.009179 TGATAGTTTCAACTCCTGAGACAAT 57.991 36.000 0.22 0.00 40.78 2.71
4995 5315 6.419484 TGATAGTTTCAACTCCTGAGACAA 57.581 37.500 0.22 0.00 40.78 3.18
4996 5316 6.419484 TTGATAGTTTCAACTCCTGAGACA 57.581 37.500 0.22 0.00 40.78 3.41
4997 5317 5.872070 CCTTGATAGTTTCAACTCCTGAGAC 59.128 44.000 0.22 0.00 39.44 3.36
4998 5318 5.569630 GCCTTGATAGTTTCAACTCCTGAGA 60.570 44.000 0.22 0.00 39.44 3.27
4999 5319 4.633565 GCCTTGATAGTTTCAACTCCTGAG 59.366 45.833 0.00 0.00 39.44 3.35
5000 5320 4.287067 AGCCTTGATAGTTTCAACTCCTGA 59.713 41.667 0.00 0.00 39.44 3.86
5001 5321 4.583871 AGCCTTGATAGTTTCAACTCCTG 58.416 43.478 0.00 0.00 39.44 3.86
5002 5322 4.917906 AGCCTTGATAGTTTCAACTCCT 57.082 40.909 0.00 0.00 39.44 3.69
5003 5323 5.119694 CCTAGCCTTGATAGTTTCAACTCC 58.880 45.833 0.00 0.00 39.44 3.85
5004 5324 5.104900 TCCCTAGCCTTGATAGTTTCAACTC 60.105 44.000 0.00 0.00 39.44 3.01
5005 5325 4.783227 TCCCTAGCCTTGATAGTTTCAACT 59.217 41.667 0.00 0.00 39.44 3.16
5006 5326 5.099042 TCCCTAGCCTTGATAGTTTCAAC 57.901 43.478 0.00 0.00 39.44 3.18
5007 5327 5.772393 TTCCCTAGCCTTGATAGTTTCAA 57.228 39.130 0.00 0.00 42.09 2.69
5008 5328 5.487488 TCTTTCCCTAGCCTTGATAGTTTCA 59.513 40.000 0.00 0.00 0.00 2.69
5009 5329 5.990668 TCTTTCCCTAGCCTTGATAGTTTC 58.009 41.667 0.00 0.00 0.00 2.78
5010 5330 6.215636 TCTTCTTTCCCTAGCCTTGATAGTTT 59.784 38.462 0.00 0.00 0.00 2.66
5011 5331 5.726793 TCTTCTTTCCCTAGCCTTGATAGTT 59.273 40.000 0.00 0.00 0.00 2.24
5012 5332 5.281314 TCTTCTTTCCCTAGCCTTGATAGT 58.719 41.667 0.00 0.00 0.00 2.12
5013 5333 5.878406 TCTTCTTTCCCTAGCCTTGATAG 57.122 43.478 0.00 0.00 0.00 2.08
5014 5334 6.636454 TTTCTTCTTTCCCTAGCCTTGATA 57.364 37.500 0.00 0.00 0.00 2.15
5015 5335 5.520748 TTTCTTCTTTCCCTAGCCTTGAT 57.479 39.130 0.00 0.00 0.00 2.57
5016 5336 4.993705 TTTCTTCTTTCCCTAGCCTTGA 57.006 40.909 0.00 0.00 0.00 3.02
5017 5337 4.082517 GCTTTTCTTCTTTCCCTAGCCTTG 60.083 45.833 0.00 0.00 0.00 3.61
5018 5338 4.082845 GCTTTTCTTCTTTCCCTAGCCTT 58.917 43.478 0.00 0.00 0.00 4.35
5019 5339 3.691575 GCTTTTCTTCTTTCCCTAGCCT 58.308 45.455 0.00 0.00 0.00 4.58
5020 5340 2.420372 CGCTTTTCTTCTTTCCCTAGCC 59.580 50.000 0.00 0.00 0.00 3.93
5021 5341 3.335579 TCGCTTTTCTTCTTTCCCTAGC 58.664 45.455 0.00 0.00 0.00 3.42
5022 5342 4.570930 ACTCGCTTTTCTTCTTTCCCTAG 58.429 43.478 0.00 0.00 0.00 3.02
5023 5343 4.618920 ACTCGCTTTTCTTCTTTCCCTA 57.381 40.909 0.00 0.00 0.00 3.53
5024 5344 3.493767 ACTCGCTTTTCTTCTTTCCCT 57.506 42.857 0.00 0.00 0.00 4.20
5025 5345 3.564225 TGAACTCGCTTTTCTTCTTTCCC 59.436 43.478 0.00 0.00 0.00 3.97
5026 5346 4.511826 TCTGAACTCGCTTTTCTTCTTTCC 59.488 41.667 0.00 0.00 0.00 3.13
5027 5347 5.659048 TCTGAACTCGCTTTTCTTCTTTC 57.341 39.130 0.00 0.00 0.00 2.62
5028 5348 4.024472 GCTCTGAACTCGCTTTTCTTCTTT 60.024 41.667 0.00 0.00 0.00 2.52
5029 5349 3.496507 GCTCTGAACTCGCTTTTCTTCTT 59.503 43.478 0.00 0.00 0.00 2.52
5030 5350 3.063485 GCTCTGAACTCGCTTTTCTTCT 58.937 45.455 0.00 0.00 0.00 2.85
5031 5351 2.802816 TGCTCTGAACTCGCTTTTCTTC 59.197 45.455 0.00 0.00 0.00 2.87
5032 5352 2.838736 TGCTCTGAACTCGCTTTTCTT 58.161 42.857 0.00 0.00 0.00 2.52
5033 5353 2.533266 TGCTCTGAACTCGCTTTTCT 57.467 45.000 0.00 0.00 0.00 2.52
5034 5354 2.287915 TGTTGCTCTGAACTCGCTTTTC 59.712 45.455 0.00 0.00 0.00 2.29
5035 5355 2.288666 TGTTGCTCTGAACTCGCTTTT 58.711 42.857 0.00 0.00 0.00 2.27
5036 5356 1.953559 TGTTGCTCTGAACTCGCTTT 58.046 45.000 0.00 0.00 0.00 3.51
5037 5357 2.072298 GATGTTGCTCTGAACTCGCTT 58.928 47.619 0.00 0.00 0.00 4.68
5038 5358 1.001293 TGATGTTGCTCTGAACTCGCT 59.999 47.619 0.00 0.00 0.00 4.93
5039 5359 1.392853 CTGATGTTGCTCTGAACTCGC 59.607 52.381 0.00 0.00 0.00 5.03
5040 5360 1.998315 CCTGATGTTGCTCTGAACTCG 59.002 52.381 0.00 0.00 0.00 4.18
5041 5361 3.325293 TCCTGATGTTGCTCTGAACTC 57.675 47.619 0.00 0.00 0.00 3.01
5042 5362 3.672808 CTTCCTGATGTTGCTCTGAACT 58.327 45.455 0.00 0.00 0.00 3.01
5043 5363 2.161211 GCTTCCTGATGTTGCTCTGAAC 59.839 50.000 0.00 0.00 0.00 3.18
5044 5364 2.430465 GCTTCCTGATGTTGCTCTGAA 58.570 47.619 0.00 0.00 0.00 3.02
5045 5365 1.339438 GGCTTCCTGATGTTGCTCTGA 60.339 52.381 0.00 0.00 0.00 3.27
5046 5366 1.093159 GGCTTCCTGATGTTGCTCTG 58.907 55.000 0.00 0.00 0.00 3.35
5047 5367 0.034670 GGGCTTCCTGATGTTGCTCT 60.035 55.000 0.00 0.00 0.00 4.09
5048 5368 0.322816 TGGGCTTCCTGATGTTGCTC 60.323 55.000 0.00 0.00 0.00 4.26
5049 5369 0.610232 GTGGGCTTCCTGATGTTGCT 60.610 55.000 0.00 0.00 0.00 3.91
5050 5370 1.598701 GGTGGGCTTCCTGATGTTGC 61.599 60.000 0.00 0.00 0.00 4.17
5051 5371 0.251297 TGGTGGGCTTCCTGATGTTG 60.251 55.000 0.00 0.00 0.00 3.33
5052 5372 0.706433 ATGGTGGGCTTCCTGATGTT 59.294 50.000 0.00 0.00 0.00 2.71
5053 5373 0.257039 GATGGTGGGCTTCCTGATGT 59.743 55.000 0.00 0.00 0.00 3.06
5054 5374 0.549950 AGATGGTGGGCTTCCTGATG 59.450 55.000 0.00 0.00 0.00 3.07
5055 5375 0.549950 CAGATGGTGGGCTTCCTGAT 59.450 55.000 0.00 0.00 0.00 2.90
5056 5376 1.993653 CAGATGGTGGGCTTCCTGA 59.006 57.895 0.00 0.00 0.00 3.86
5057 5377 1.751927 GCAGATGGTGGGCTTCCTG 60.752 63.158 0.00 0.00 0.00 3.86
5058 5378 2.679716 GCAGATGGTGGGCTTCCT 59.320 61.111 0.00 0.00 0.00 3.36
5059 5379 2.825836 CGCAGATGGTGGGCTTCC 60.826 66.667 0.00 0.00 31.39 3.46
5064 5384 4.415150 ACAGGCGCAGATGGTGGG 62.415 66.667 10.83 0.00 42.10 4.61
5065 5385 2.821366 GACAGGCGCAGATGGTGG 60.821 66.667 10.83 0.00 0.00 4.61
5066 5386 1.434622 GATGACAGGCGCAGATGGTG 61.435 60.000 10.83 0.00 0.00 4.17
5067 5387 1.153289 GATGACAGGCGCAGATGGT 60.153 57.895 10.83 0.00 0.00 3.55
5068 5388 1.153309 TGATGACAGGCGCAGATGG 60.153 57.895 10.83 0.00 0.00 3.51
5069 5389 2.308344 CTGATGACAGGCGCAGATG 58.692 57.895 10.83 7.41 40.14 2.90
5070 5390 4.850822 CTGATGACAGGCGCAGAT 57.149 55.556 10.83 0.00 40.14 2.90
5080 5400 2.733858 GCTCTCTGTCGTTCCTGATGAC 60.734 54.545 0.00 0.00 43.31 3.06
5081 5401 1.474478 GCTCTCTGTCGTTCCTGATGA 59.526 52.381 0.00 0.00 0.00 2.92
5082 5402 1.476085 AGCTCTCTGTCGTTCCTGATG 59.524 52.381 0.00 0.00 0.00 3.07
5083 5403 1.846007 AGCTCTCTGTCGTTCCTGAT 58.154 50.000 0.00 0.00 0.00 2.90
5084 5404 1.621992 AAGCTCTCTGTCGTTCCTGA 58.378 50.000 0.00 0.00 0.00 3.86
5085 5405 3.443037 CATAAGCTCTCTGTCGTTCCTG 58.557 50.000 0.00 0.00 0.00 3.86
5086 5406 2.428890 CCATAAGCTCTCTGTCGTTCCT 59.571 50.000 0.00 0.00 0.00 3.36
5087 5407 2.166664 ACCATAAGCTCTCTGTCGTTCC 59.833 50.000 0.00 0.00 0.00 3.62
5088 5408 3.512033 ACCATAAGCTCTCTGTCGTTC 57.488 47.619 0.00 0.00 0.00 3.95
5089 5409 3.963428 AACCATAAGCTCTCTGTCGTT 57.037 42.857 0.00 0.00 0.00 3.85
5090 5410 3.511934 AGAAACCATAAGCTCTCTGTCGT 59.488 43.478 0.00 0.00 0.00 4.34
5091 5411 3.862267 CAGAAACCATAAGCTCTCTGTCG 59.138 47.826 0.00 0.00 0.00 4.35
5092 5412 4.187694 CCAGAAACCATAAGCTCTCTGTC 58.812 47.826 0.00 0.00 30.55 3.51
5093 5413 3.620966 GCCAGAAACCATAAGCTCTCTGT 60.621 47.826 0.00 0.00 30.55 3.41
5094 5414 2.941720 GCCAGAAACCATAAGCTCTCTG 59.058 50.000 0.00 0.00 0.00 3.35
5095 5415 2.573462 TGCCAGAAACCATAAGCTCTCT 59.427 45.455 0.00 0.00 0.00 3.10
5096 5416 2.680339 GTGCCAGAAACCATAAGCTCTC 59.320 50.000 0.00 0.00 0.00 3.20
5097 5417 2.040278 TGTGCCAGAAACCATAAGCTCT 59.960 45.455 0.00 0.00 0.00 4.09
5127 5447 7.917505 GCAAAATCACTCCGATCAAATATTTCT 59.082 33.333 0.00 0.00 31.11 2.52
5271 5592 5.765677 TCTTTCGGGTCTAGTATCAGATGAG 59.234 44.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.