Multiple sequence alignment - TraesCS2D01G341000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G341000 chr2D 100.000 2549 0 0 1 2549 435208985 435211533 0.000000e+00 4708.0
1 TraesCS2D01G341000 chr2D 86.628 172 12 5 1 172 435272081 435272241 2.010000e-41 180.0
2 TraesCS2D01G341000 chr2D 89.908 109 7 3 47 154 435170388 435170493 1.230000e-28 137.0
3 TraesCS2D01G341000 chr2D 87.500 48 6 0 394 441 435272269 435272316 3.540000e-04 56.5
4 TraesCS2D01G341000 chr5D 94.349 1221 56 6 615 1825 357075968 357074751 0.000000e+00 1860.0
5 TraesCS2D01G341000 chr5D 89.796 686 40 14 1881 2549 458540276 458539604 0.000000e+00 852.0
6 TraesCS2D01G341000 chr5D 86.982 169 20 2 222 389 25039980 25040147 3.350000e-44 189.0
7 TraesCS2D01G341000 chr5D 87.273 165 18 3 226 389 466417370 466417532 4.330000e-43 185.0
8 TraesCS2D01G341000 chr5D 86.957 161 21 0 225 385 545990135 545989975 5.600000e-42 182.0
9 TraesCS2D01G341000 chr5D 86.585 164 20 2 225 386 15217170 15217007 2.010000e-41 180.0
10 TraesCS2D01G341000 chr5D 86.145 166 22 1 221 385 475729393 475729558 7.250000e-41 178.0
11 TraesCS2D01G341000 chr1B 94.011 1219 60 7 614 1825 645321436 645322648 0.000000e+00 1834.0
12 TraesCS2D01G341000 chr1B 90.288 1215 85 9 613 1824 648815703 648814519 0.000000e+00 1559.0
13 TraesCS2D01G341000 chr1B 88.729 1251 80 21 615 1824 571670835 571672065 0.000000e+00 1472.0
14 TraesCS2D01G341000 chr1B 90.476 189 15 3 1638 1825 628772181 628771995 1.960000e-61 246.0
15 TraesCS2D01G341000 chr1B 87.647 170 21 0 211 380 126267133 126267302 5.560000e-47 198.0
16 TraesCS2D01G341000 chr1B 87.425 167 19 2 220 385 606841319 606841154 9.310000e-45 191.0
17 TraesCS2D01G341000 chr1B 84.865 185 20 2 1881 2057 689727177 689726993 2.010000e-41 180.0
18 TraesCS2D01G341000 chr3A 93.580 1215 62 7 615 1825 164803399 164802197 0.000000e+00 1797.0
19 TraesCS2D01G341000 chr3A 90.314 733 26 9 1826 2518 34185237 34185964 0.000000e+00 918.0
20 TraesCS2D01G341000 chr3A 87.952 166 17 3 225 389 326990050 326990213 2.590000e-45 193.0
21 TraesCS2D01G341000 chr3A 95.789 95 4 0 1964 2058 742524442 742524348 1.220000e-33 154.0
22 TraesCS2D01G341000 chr4B 93.344 1217 71 6 617 1825 251255863 251257077 0.000000e+00 1790.0
23 TraesCS2D01G341000 chr4B 92.162 1212 74 7 614 1817 180620299 180619101 0.000000e+00 1692.0
24 TraesCS2D01G341000 chr5A 93.361 1220 64 9 611 1825 689409582 689408375 0.000000e+00 1788.0
25 TraesCS2D01G341000 chr5A 92.881 1222 72 8 613 1825 28960261 28959046 0.000000e+00 1760.0
26 TraesCS2D01G341000 chr2B 92.125 1219 82 8 614 1825 485690851 485692062 0.000000e+00 1707.0
27 TraesCS2D01G341000 chr2B 88.936 235 19 4 384 614 513693940 513694171 1.490000e-72 283.0
28 TraesCS2D01G341000 chr2B 90.164 183 8 3 1 183 513693715 513693887 1.970000e-56 230.0
29 TraesCS2D01G341000 chr2B 86.813 182 17 1 1884 2058 677484661 677484480 2.000000e-46 196.0
30 TraesCS2D01G341000 chr2B 86.585 164 10 8 47 205 513704672 513704828 1.210000e-38 171.0
31 TraesCS2D01G341000 chr2B 84.177 158 11 8 1 158 513618741 513618884 9.510000e-30 141.0
32 TraesCS2D01G341000 chr7D 91.456 1229 85 12 611 1825 565949623 565948401 0.000000e+00 1670.0
33 TraesCS2D01G341000 chr7D 97.127 557 9 3 1993 2549 637779315 637778766 0.000000e+00 933.0
34 TraesCS2D01G341000 chr7D 90.490 673 46 12 1881 2549 627039857 627039199 0.000000e+00 872.0
35 TraesCS2D01G341000 chr7D 96.374 524 11 4 2026 2549 225873296 225873811 0.000000e+00 856.0
36 TraesCS2D01G341000 chr7D 87.975 158 18 1 229 385 507853753 507853596 4.330000e-43 185.0
37 TraesCS2D01G341000 chr7D 85.246 122 18 0 493 614 117247528 117247649 2.660000e-25 126.0
38 TraesCS2D01G341000 chr1D 96.221 741 12 6 1821 2549 15120830 15120094 0.000000e+00 1199.0
39 TraesCS2D01G341000 chr1D 96.903 678 10 3 1881 2549 315218027 315217352 0.000000e+00 1125.0
40 TraesCS2D01G341000 chr1D 90.308 681 46 11 1881 2549 298460244 298460916 0.000000e+00 874.0
41 TraesCS2D01G341000 chr1D 87.654 162 19 1 225 385 437268700 437268539 1.200000e-43 187.0
42 TraesCS2D01G341000 chr1D 86.061 165 20 3 226 389 424834911 424834749 9.370000e-40 174.0
43 TraesCS2D01G341000 chr1D 86.250 160 18 3 231 389 391735362 391735518 1.210000e-38 171.0
44 TraesCS2D01G341000 chr1D 85.119 168 24 1 219 385 422381741 422381908 1.210000e-38 171.0
45 TraesCS2D01G341000 chr4A 91.413 722 30 10 1823 2518 662311189 662311904 0.000000e+00 961.0
46 TraesCS2D01G341000 chr6D 96.948 557 9 2 1993 2549 423402882 423402334 0.000000e+00 928.0
47 TraesCS2D01G341000 chr6D 90.233 686 38 15 1881 2549 394306607 394305934 0.000000e+00 869.0
48 TraesCS2D01G341000 chr6D 86.747 166 21 1 225 389 99567596 99567431 1.560000e-42 183.0
49 TraesCS2D01G341000 chr6D 86.145 166 22 1 221 385 145466484 145466649 7.250000e-41 178.0
50 TraesCS2D01G341000 chr6D 85.455 165 23 1 222 385 121799168 121799332 1.210000e-38 171.0
51 TraesCS2D01G341000 chr6D 84.431 167 24 2 221 385 45238711 45238877 2.030000e-36 163.0
52 TraesCS2D01G341000 chr6D 82.320 181 29 3 225 403 226461086 226460907 1.220000e-33 154.0
53 TraesCS2D01G341000 chr6D 83.951 162 24 2 225 385 359787967 359787807 1.220000e-33 154.0
54 TraesCS2D01G341000 chr6D 82.635 167 26 3 221 385 56785817 56785982 7.350000e-31 145.0
55 TraesCS2D01G341000 chr6D 83.333 150 24 1 232 380 457670468 457670319 1.230000e-28 137.0
56 TraesCS2D01G341000 chr7A 89.688 737 31 9 1822 2518 718858980 718859711 0.000000e+00 898.0
57 TraesCS2D01G341000 chr7A 89.157 166 15 3 225 389 105574066 105573903 1.200000e-48 204.0
58 TraesCS2D01G341000 chr7A 86.286 175 23 1 221 394 323712196 323712022 3.350000e-44 189.0
59 TraesCS2D01G341000 chr2A 88.841 233 15 6 1 223 551475376 551475145 2.500000e-70 276.0
60 TraesCS2D01G341000 chr2A 90.625 160 9 3 1 159 551463926 551463772 9.240000e-50 207.0
61 TraesCS2D01G341000 chr2A 90.517 116 6 1 42 157 551374220 551374110 5.680000e-32 148.0
62 TraesCS2D01G341000 chr2A 84.848 99 12 1 393 488 551463661 551463563 2.090000e-16 97.1
63 TraesCS2D01G341000 chr2A 85.526 76 11 0 498 573 1497653 1497578 2.100000e-11 80.5
64 TraesCS2D01G341000 chrUn 87.654 243 20 4 1826 2058 77305152 77304910 8.980000e-70 274.0
65 TraesCS2D01G341000 chrUn 87.654 243 20 4 1826 2058 77342752 77342510 8.980000e-70 274.0
66 TraesCS2D01G341000 chrUn 87.654 243 20 4 1826 2058 77346084 77345842 8.980000e-70 274.0
67 TraesCS2D01G341000 chrUn 87.654 243 20 4 1826 2058 77350664 77350422 8.980000e-70 274.0
68 TraesCS2D01G341000 chrUn 83.234 167 26 2 221 385 27855588 27855754 4.390000e-33 152.0
69 TraesCS2D01G341000 chr5B 93.122 189 10 3 1638 1825 636963586 636963772 8.980000e-70 274.0
70 TraesCS2D01G341000 chr5B 87.135 171 21 1 220 389 663093496 663093666 2.590000e-45 193.0
71 TraesCS2D01G341000 chr5B 89.247 93 4 4 1970 2058 290920415 290920325 7.450000e-21 111.0
72 TraesCS2D01G341000 chr7B 86.559 186 17 2 1881 2058 159156430 159156245 5.560000e-47 198.0
73 TraesCS2D01G341000 chr7B 88.485 165 18 1 222 385 748308585 748308749 5.560000e-47 198.0
74 TraesCS2D01G341000 chr6A 87.059 170 20 1 222 389 445831416 445831585 9.310000e-45 191.0
75 TraesCS2D01G341000 chr1A 87.349 166 18 3 225 389 572972094 572971931 1.200000e-43 187.0
76 TraesCS2D01G341000 chr1A 86.061 165 20 3 226 389 543843107 543842945 9.370000e-40 174.0
77 TraesCS2D01G341000 chr3D 86.905 168 19 3 225 391 12636015 12635850 4.330000e-43 185.0
78 TraesCS2D01G341000 chr3D 85.465 172 24 1 225 395 203261730 203261559 7.250000e-41 178.0
79 TraesCS2D01G341000 chr4D 85.207 169 25 0 217 385 417622627 417622459 9.370000e-40 174.0
80 TraesCS2D01G341000 chr4D 84.091 176 24 3 211 385 50887875 50888047 1.570000e-37 167.0
81 TraesCS2D01G341000 chr4D 83.708 178 28 1 219 395 177892605 177892782 1.570000e-37 167.0
82 TraesCS2D01G341000 chr4D 84.431 167 24 2 221 385 402430314 402430480 2.030000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G341000 chr2D 435208985 435211533 2548 False 4708 4708 100.000 1 2549 1 chr2D.!!$F2 2548
1 TraesCS2D01G341000 chr5D 357074751 357075968 1217 True 1860 1860 94.349 615 1825 1 chr5D.!!$R2 1210
2 TraesCS2D01G341000 chr5D 458539604 458540276 672 True 852 852 89.796 1881 2549 1 chr5D.!!$R3 668
3 TraesCS2D01G341000 chr1B 645321436 645322648 1212 False 1834 1834 94.011 614 1825 1 chr1B.!!$F3 1211
4 TraesCS2D01G341000 chr1B 648814519 648815703 1184 True 1559 1559 90.288 613 1824 1 chr1B.!!$R3 1211
5 TraesCS2D01G341000 chr1B 571670835 571672065 1230 False 1472 1472 88.729 615 1824 1 chr1B.!!$F2 1209
6 TraesCS2D01G341000 chr3A 164802197 164803399 1202 True 1797 1797 93.580 615 1825 1 chr3A.!!$R1 1210
7 TraesCS2D01G341000 chr3A 34185237 34185964 727 False 918 918 90.314 1826 2518 1 chr3A.!!$F1 692
8 TraesCS2D01G341000 chr4B 251255863 251257077 1214 False 1790 1790 93.344 617 1825 1 chr4B.!!$F1 1208
9 TraesCS2D01G341000 chr4B 180619101 180620299 1198 True 1692 1692 92.162 614 1817 1 chr4B.!!$R1 1203
10 TraesCS2D01G341000 chr5A 689408375 689409582 1207 True 1788 1788 93.361 611 1825 1 chr5A.!!$R2 1214
11 TraesCS2D01G341000 chr5A 28959046 28960261 1215 True 1760 1760 92.881 613 1825 1 chr5A.!!$R1 1212
12 TraesCS2D01G341000 chr2B 485690851 485692062 1211 False 1707 1707 92.125 614 1825 1 chr2B.!!$F1 1211
13 TraesCS2D01G341000 chr7D 565948401 565949623 1222 True 1670 1670 91.456 611 1825 1 chr7D.!!$R2 1214
14 TraesCS2D01G341000 chr7D 637778766 637779315 549 True 933 933 97.127 1993 2549 1 chr7D.!!$R4 556
15 TraesCS2D01G341000 chr7D 627039199 627039857 658 True 872 872 90.490 1881 2549 1 chr7D.!!$R3 668
16 TraesCS2D01G341000 chr7D 225873296 225873811 515 False 856 856 96.374 2026 2549 1 chr7D.!!$F2 523
17 TraesCS2D01G341000 chr1D 15120094 15120830 736 True 1199 1199 96.221 1821 2549 1 chr1D.!!$R1 728
18 TraesCS2D01G341000 chr1D 315217352 315218027 675 True 1125 1125 96.903 1881 2549 1 chr1D.!!$R2 668
19 TraesCS2D01G341000 chr1D 298460244 298460916 672 False 874 874 90.308 1881 2549 1 chr1D.!!$F1 668
20 TraesCS2D01G341000 chr4A 662311189 662311904 715 False 961 961 91.413 1823 2518 1 chr4A.!!$F1 695
21 TraesCS2D01G341000 chr6D 423402334 423402882 548 True 928 928 96.948 1993 2549 1 chr6D.!!$R5 556
22 TraesCS2D01G341000 chr6D 394305934 394306607 673 True 869 869 90.233 1881 2549 1 chr6D.!!$R4 668
23 TraesCS2D01G341000 chr7A 718858980 718859711 731 False 898 898 89.688 1822 2518 1 chr7A.!!$F1 696
24 TraesCS2D01G341000 chrUn 77342510 77346084 3574 True 274 274 87.654 1826 2058 2 chrUn.!!$R3 232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.033090 CCTAACCGACCGCCCTAATC 59.967 60.0 0.0 0.00 0.00 1.75 F
728 730 0.040692 CGACTCGTTCCGTGAACTCA 60.041 55.0 12.8 2.01 40.05 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1060 1123 0.311165 CGTGGACAGACGAAGACAGT 59.689 55.000 0.0 0.0 42.10 3.55 R
2082 2209 1.551883 GGTCTTTTTGCCATCTGCCAT 59.448 47.619 0.0 0.0 40.16 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.246403 TCATCACGCCATGAAGCAA 57.754 47.368 0.00 0.00 41.93 3.91
19 20 1.532523 TCATCACGCCATGAAGCAAA 58.467 45.000 0.00 0.00 41.93 3.68
20 21 1.199789 TCATCACGCCATGAAGCAAAC 59.800 47.619 0.00 0.00 41.93 2.93
21 22 0.527565 ATCACGCCATGAAGCAAACC 59.472 50.000 0.00 0.00 41.93 3.27
22 23 1.080569 CACGCCATGAAGCAAACCC 60.081 57.895 0.00 0.00 0.00 4.11
23 24 1.228552 ACGCCATGAAGCAAACCCT 60.229 52.632 0.00 0.00 0.00 4.34
24 25 0.827507 ACGCCATGAAGCAAACCCTT 60.828 50.000 0.00 0.00 0.00 3.95
25 26 0.318120 CGCCATGAAGCAAACCCTTT 59.682 50.000 0.00 0.00 0.00 3.11
26 27 1.270252 CGCCATGAAGCAAACCCTTTT 60.270 47.619 0.00 0.00 0.00 2.27
27 28 2.806382 CGCCATGAAGCAAACCCTTTTT 60.806 45.455 0.00 0.00 0.00 1.94
28 29 2.549329 GCCATGAAGCAAACCCTTTTTG 59.451 45.455 0.00 0.00 0.00 2.44
32 33 4.473643 GCAAACCCTTTTTGCCCC 57.526 55.556 10.04 0.00 46.51 5.80
33 34 1.836391 GCAAACCCTTTTTGCCCCT 59.164 52.632 10.04 0.00 46.51 4.79
34 35 0.534877 GCAAACCCTTTTTGCCCCTG 60.535 55.000 10.04 0.00 46.51 4.45
35 36 0.836606 CAAACCCTTTTTGCCCCTGT 59.163 50.000 0.00 0.00 0.00 4.00
36 37 0.836606 AAACCCTTTTTGCCCCTGTG 59.163 50.000 0.00 0.00 0.00 3.66
37 38 1.695114 AACCCTTTTTGCCCCTGTGC 61.695 55.000 0.00 0.00 0.00 4.57
38 39 2.139484 CCCTTTTTGCCCCTGTGCA 61.139 57.895 0.00 0.00 40.07 4.57
39 40 1.482748 CCCTTTTTGCCCCTGTGCAT 61.483 55.000 0.00 0.00 41.70 3.96
40 41 0.320946 CCTTTTTGCCCCTGTGCATG 60.321 55.000 0.00 0.00 41.70 4.06
41 42 0.952010 CTTTTTGCCCCTGTGCATGC 60.952 55.000 11.82 11.82 41.70 4.06
42 43 1.409251 TTTTTGCCCCTGTGCATGCT 61.409 50.000 20.33 0.00 41.70 3.79
43 44 2.102109 TTTTGCCCCTGTGCATGCTG 62.102 55.000 20.33 8.96 41.70 4.41
44 45 3.813606 TTGCCCCTGTGCATGCTGT 62.814 57.895 20.33 0.00 41.70 4.40
45 46 3.755628 GCCCCTGTGCATGCTGTG 61.756 66.667 20.33 8.23 0.00 3.66
54 55 2.127003 CATGCTGTGCTGTGCGTG 60.127 61.111 0.00 0.00 39.38 5.34
55 56 4.034258 ATGCTGTGCTGTGCGTGC 62.034 61.111 0.00 0.00 0.00 5.34
57 58 4.380628 GCTGTGCTGTGCGTGCTC 62.381 66.667 0.00 0.00 0.00 4.26
58 59 2.968697 CTGTGCTGTGCGTGCTCA 60.969 61.111 0.00 0.00 33.71 4.26
59 60 2.281002 TGTGCTGTGCGTGCTCAT 60.281 55.556 0.00 0.00 0.00 2.90
60 61 2.236803 CTGTGCTGTGCGTGCTCATC 62.237 60.000 0.00 0.00 34.21 2.92
61 62 2.030862 TGCTGTGCGTGCTCATCA 59.969 55.556 0.00 0.00 0.00 3.07
62 63 2.030958 TGCTGTGCGTGCTCATCAG 61.031 57.895 0.00 0.94 0.00 2.90
64 65 2.743538 TGTGCGTGCTCATCAGCC 60.744 61.111 0.00 0.00 46.26 4.85
65 66 3.857854 GTGCGTGCTCATCAGCCG 61.858 66.667 0.00 0.00 46.26 5.52
69 70 3.260483 GTGCTCATCAGCCGCGAG 61.260 66.667 8.23 0.00 46.26 5.03
70 71 3.451894 TGCTCATCAGCCGCGAGA 61.452 61.111 8.23 2.39 46.26 4.04
71 72 2.959071 GCTCATCAGCCGCGAGAC 60.959 66.667 8.23 0.00 40.14 3.36
72 73 2.491621 CTCATCAGCCGCGAGACA 59.508 61.111 8.23 0.00 0.00 3.41
73 74 1.875813 CTCATCAGCCGCGAGACAC 60.876 63.158 8.23 0.00 0.00 3.67
74 75 2.125952 CATCAGCCGCGAGACACA 60.126 61.111 8.23 0.00 0.00 3.72
75 76 1.737735 CATCAGCCGCGAGACACAA 60.738 57.895 8.23 0.00 0.00 3.33
76 77 1.446792 ATCAGCCGCGAGACACAAG 60.447 57.895 8.23 0.00 0.00 3.16
77 78 3.782244 CAGCCGCGAGACACAAGC 61.782 66.667 8.23 0.00 0.00 4.01
82 83 4.373116 GCGAGACACAAGCCGGGA 62.373 66.667 2.18 0.00 0.00 5.14
83 84 2.342279 CGAGACACAAGCCGGGAA 59.658 61.111 2.18 0.00 0.00 3.97
84 85 1.301401 CGAGACACAAGCCGGGAAA 60.301 57.895 2.18 0.00 0.00 3.13
85 86 0.882927 CGAGACACAAGCCGGGAAAA 60.883 55.000 2.18 0.00 0.00 2.29
86 87 0.591659 GAGACACAAGCCGGGAAAAC 59.408 55.000 2.18 0.00 0.00 2.43
87 88 0.182775 AGACACAAGCCGGGAAAACT 59.817 50.000 2.18 0.00 0.00 2.66
88 89 1.029681 GACACAAGCCGGGAAAACTT 58.970 50.000 2.18 0.00 0.00 2.66
89 90 0.744281 ACACAAGCCGGGAAAACTTG 59.256 50.000 14.86 14.86 44.98 3.16
90 91 0.597377 CACAAGCCGGGAAAACTTGC 60.597 55.000 15.98 0.00 43.63 4.01
91 92 1.371635 CAAGCCGGGAAAACTTGCG 60.372 57.895 2.18 0.00 34.90 4.85
92 93 1.527380 AAGCCGGGAAAACTTGCGA 60.527 52.632 2.18 0.00 0.00 5.10
93 94 1.792118 AAGCCGGGAAAACTTGCGAC 61.792 55.000 2.18 0.00 0.00 5.19
94 95 2.951458 CCGGGAAAACTTGCGACC 59.049 61.111 0.00 0.00 0.00 4.79
95 96 1.894756 CCGGGAAAACTTGCGACCA 60.895 57.895 0.00 0.00 0.00 4.02
96 97 1.574428 CGGGAAAACTTGCGACCAG 59.426 57.895 0.00 0.00 0.00 4.00
97 98 0.882927 CGGGAAAACTTGCGACCAGA 60.883 55.000 0.00 0.00 0.00 3.86
98 99 0.591659 GGGAAAACTTGCGACCAGAC 59.408 55.000 0.00 0.00 0.00 3.51
99 100 0.591659 GGAAAACTTGCGACCAGACC 59.408 55.000 0.00 0.00 0.00 3.85
100 101 1.305201 GAAAACTTGCGACCAGACCA 58.695 50.000 0.00 0.00 0.00 4.02
101 102 1.673920 GAAAACTTGCGACCAGACCAA 59.326 47.619 0.00 0.00 0.00 3.67
102 103 1.021968 AAACTTGCGACCAGACCAAC 58.978 50.000 0.00 0.00 0.00 3.77
103 104 0.818040 AACTTGCGACCAGACCAACC 60.818 55.000 0.00 0.00 0.00 3.77
104 105 2.280524 TTGCGACCAGACCAACCG 60.281 61.111 0.00 0.00 0.00 4.44
105 106 4.980805 TGCGACCAGACCAACCGC 62.981 66.667 0.00 0.00 45.28 5.68
107 108 4.308458 CGACCAGACCAACCGCCA 62.308 66.667 0.00 0.00 0.00 5.69
108 109 2.351276 GACCAGACCAACCGCCAT 59.649 61.111 0.00 0.00 0.00 4.40
109 110 1.303317 GACCAGACCAACCGCCATT 60.303 57.895 0.00 0.00 0.00 3.16
110 111 0.035820 GACCAGACCAACCGCCATTA 60.036 55.000 0.00 0.00 0.00 1.90
111 112 0.322187 ACCAGACCAACCGCCATTAC 60.322 55.000 0.00 0.00 0.00 1.89
112 113 0.035439 CCAGACCAACCGCCATTACT 60.035 55.000 0.00 0.00 0.00 2.24
113 114 1.208535 CCAGACCAACCGCCATTACTA 59.791 52.381 0.00 0.00 0.00 1.82
114 115 2.158813 CCAGACCAACCGCCATTACTAT 60.159 50.000 0.00 0.00 0.00 2.12
115 116 3.070446 CCAGACCAACCGCCATTACTATA 59.930 47.826 0.00 0.00 0.00 1.31
116 117 4.443739 CCAGACCAACCGCCATTACTATAA 60.444 45.833 0.00 0.00 0.00 0.98
117 118 5.305585 CAGACCAACCGCCATTACTATAAT 58.694 41.667 0.00 0.00 0.00 1.28
118 119 5.408604 CAGACCAACCGCCATTACTATAATC 59.591 44.000 0.00 0.00 0.00 1.75
119 120 4.648651 ACCAACCGCCATTACTATAATCC 58.351 43.478 0.00 0.00 0.00 3.01
120 121 4.007659 CCAACCGCCATTACTATAATCCC 58.992 47.826 0.00 0.00 0.00 3.85
121 122 3.604875 ACCGCCATTACTATAATCCCG 57.395 47.619 0.00 0.00 0.00 5.14
122 123 2.235402 ACCGCCATTACTATAATCCCGG 59.765 50.000 0.00 0.00 39.09 5.73
123 124 2.235402 CCGCCATTACTATAATCCCGGT 59.765 50.000 0.00 0.00 0.00 5.28
124 125 3.448301 CCGCCATTACTATAATCCCGGTA 59.552 47.826 0.00 0.00 0.00 4.02
125 126 4.441079 CCGCCATTACTATAATCCCGGTAG 60.441 50.000 0.00 0.00 0.00 3.18
126 127 4.441079 CGCCATTACTATAATCCCGGTAGG 60.441 50.000 0.00 0.00 37.24 3.18
127 128 4.468868 GCCATTACTATAATCCCGGTAGGT 59.531 45.833 0.00 0.00 36.75 3.08
128 129 5.046087 GCCATTACTATAATCCCGGTAGGTT 60.046 44.000 0.00 0.00 36.75 3.50
129 130 6.521255 GCCATTACTATAATCCCGGTAGGTTT 60.521 42.308 0.00 0.00 36.75 3.27
130 131 6.877322 CCATTACTATAATCCCGGTAGGTTTG 59.123 42.308 0.00 0.00 36.75 2.93
131 132 7.447594 CATTACTATAATCCCGGTAGGTTTGT 58.552 38.462 0.00 0.00 36.75 2.83
132 133 5.286267 ACTATAATCCCGGTAGGTTTGTG 57.714 43.478 0.00 0.00 36.75 3.33
133 134 4.718276 ACTATAATCCCGGTAGGTTTGTGT 59.282 41.667 0.00 0.00 36.75 3.72
134 135 2.484742 AATCCCGGTAGGTTTGTGTC 57.515 50.000 0.00 0.00 36.75 3.67
135 136 0.616891 ATCCCGGTAGGTTTGTGTCC 59.383 55.000 0.00 0.00 36.75 4.02
136 137 0.472352 TCCCGGTAGGTTTGTGTCCT 60.472 55.000 0.00 0.00 38.91 3.85
137 138 1.203162 TCCCGGTAGGTTTGTGTCCTA 60.203 52.381 0.00 0.00 36.60 2.94
138 139 1.624813 CCCGGTAGGTTTGTGTCCTAA 59.375 52.381 0.00 0.00 38.97 2.69
139 140 2.613725 CCCGGTAGGTTTGTGTCCTAAC 60.614 54.545 0.00 0.00 40.67 2.34
140 141 2.613725 CCGGTAGGTTTGTGTCCTAACC 60.614 54.545 0.00 0.00 44.01 2.85
141 142 2.691927 GGTAGGTTTGTGTCCTAACCG 58.308 52.381 0.00 0.00 46.90 4.44
142 143 2.299867 GGTAGGTTTGTGTCCTAACCGA 59.700 50.000 0.00 0.00 46.90 4.69
143 144 2.538512 AGGTTTGTGTCCTAACCGAC 57.461 50.000 0.00 0.00 46.90 4.79
144 145 1.071228 AGGTTTGTGTCCTAACCGACC 59.929 52.381 0.00 0.00 46.90 4.79
145 146 1.142474 GTTTGTGTCCTAACCGACCG 58.858 55.000 0.00 0.00 31.35 4.79
146 147 0.600782 TTTGTGTCCTAACCGACCGC 60.601 55.000 0.00 0.00 31.35 5.68
147 148 2.125793 GTGTCCTAACCGACCGCC 60.126 66.667 0.00 0.00 31.35 6.13
148 149 3.384532 TGTCCTAACCGACCGCCC 61.385 66.667 0.00 0.00 31.35 6.13
149 150 3.073101 GTCCTAACCGACCGCCCT 61.073 66.667 0.00 0.00 0.00 5.19
150 151 1.754234 GTCCTAACCGACCGCCCTA 60.754 63.158 0.00 0.00 0.00 3.53
151 152 1.000233 TCCTAACCGACCGCCCTAA 60.000 57.895 0.00 0.00 0.00 2.69
152 153 0.397535 TCCTAACCGACCGCCCTAAT 60.398 55.000 0.00 0.00 0.00 1.73
153 154 0.033090 CCTAACCGACCGCCCTAATC 59.967 60.000 0.00 0.00 0.00 1.75
154 155 0.318445 CTAACCGACCGCCCTAATCG 60.318 60.000 0.00 0.00 35.62 3.34
155 156 1.037030 TAACCGACCGCCCTAATCGT 61.037 55.000 0.00 0.00 34.02 3.73
156 157 2.027169 CCGACCGCCCTAATCGTC 59.973 66.667 0.00 0.00 34.02 4.20
157 158 2.353145 CGACCGCCCTAATCGTCG 60.353 66.667 0.00 0.00 0.00 5.12
158 159 2.657620 GACCGCCCTAATCGTCGC 60.658 66.667 0.00 0.00 0.00 5.19
159 160 3.420214 GACCGCCCTAATCGTCGCA 62.420 63.158 0.00 0.00 0.00 5.10
160 161 2.029073 CCGCCCTAATCGTCGCAT 59.971 61.111 0.00 0.00 0.00 4.73
161 162 2.022129 CCGCCCTAATCGTCGCATC 61.022 63.158 0.00 0.00 0.00 3.91
162 163 1.299850 CGCCCTAATCGTCGCATCA 60.300 57.895 0.00 0.00 0.00 3.07
163 164 0.667487 CGCCCTAATCGTCGCATCAT 60.667 55.000 0.00 0.00 0.00 2.45
164 165 0.792640 GCCCTAATCGTCGCATCATG 59.207 55.000 0.00 0.00 0.00 3.07
165 166 0.792640 CCCTAATCGTCGCATCATGC 59.207 55.000 0.00 0.00 40.69 4.06
166 167 1.606480 CCCTAATCGTCGCATCATGCT 60.606 52.381 8.30 0.00 42.25 3.79
167 168 1.458445 CCTAATCGTCGCATCATGCTG 59.542 52.381 8.30 1.40 42.25 4.41
168 169 2.130395 CTAATCGTCGCATCATGCTGT 58.870 47.619 8.30 0.00 42.25 4.40
169 170 1.372582 AATCGTCGCATCATGCTGTT 58.627 45.000 8.30 0.00 42.25 3.16
170 171 1.372582 ATCGTCGCATCATGCTGTTT 58.627 45.000 8.30 0.00 42.25 2.83
171 172 1.155889 TCGTCGCATCATGCTGTTTT 58.844 45.000 8.30 0.00 42.25 2.43
172 173 1.136000 TCGTCGCATCATGCTGTTTTG 60.136 47.619 8.30 0.00 42.25 2.44
173 174 0.986992 GTCGCATCATGCTGTTTTGC 59.013 50.000 8.30 0.00 42.25 3.68
174 175 0.109179 TCGCATCATGCTGTTTTGCC 60.109 50.000 8.30 0.00 42.25 4.52
175 176 0.388778 CGCATCATGCTGTTTTGCCA 60.389 50.000 8.30 0.00 42.25 4.92
176 177 1.798283 GCATCATGCTGTTTTGCCAA 58.202 45.000 1.02 0.00 40.96 4.52
177 178 2.144730 GCATCATGCTGTTTTGCCAAA 58.855 42.857 1.02 0.00 40.96 3.28
178 179 2.096119 GCATCATGCTGTTTTGCCAAAC 60.096 45.455 1.02 6.46 40.96 2.93
179 180 2.237393 TCATGCTGTTTTGCCAAACC 57.763 45.000 10.61 0.00 41.60 3.27
180 181 1.202627 TCATGCTGTTTTGCCAAACCC 60.203 47.619 10.61 3.20 41.60 4.11
181 182 0.108396 ATGCTGTTTTGCCAAACCCC 59.892 50.000 10.61 2.88 41.60 4.95
182 183 1.267574 TGCTGTTTTGCCAAACCCCA 61.268 50.000 10.61 5.23 41.60 4.96
183 184 0.532640 GCTGTTTTGCCAAACCCCAG 60.533 55.000 10.61 3.48 41.60 4.45
184 185 0.532640 CTGTTTTGCCAAACCCCAGC 60.533 55.000 10.61 0.00 41.60 4.85
185 186 0.980231 TGTTTTGCCAAACCCCAGCT 60.980 50.000 10.61 0.00 41.60 4.24
186 187 1.044611 GTTTTGCCAAACCCCAGCTA 58.955 50.000 1.98 0.00 36.96 3.32
187 188 1.000843 GTTTTGCCAAACCCCAGCTAG 59.999 52.381 1.98 0.00 36.96 3.42
188 189 0.187361 TTTGCCAAACCCCAGCTAGT 59.813 50.000 0.00 0.00 0.00 2.57
189 190 0.187361 TTGCCAAACCCCAGCTAGTT 59.813 50.000 0.00 0.00 0.00 2.24
190 191 0.251165 TGCCAAACCCCAGCTAGTTC 60.251 55.000 0.00 0.00 0.00 3.01
191 192 0.965866 GCCAAACCCCAGCTAGTTCC 60.966 60.000 0.00 0.00 0.00 3.62
192 193 0.404040 CCAAACCCCAGCTAGTTCCA 59.596 55.000 0.00 0.00 0.00 3.53
193 194 1.005924 CCAAACCCCAGCTAGTTCCAT 59.994 52.381 0.00 0.00 0.00 3.41
194 195 2.557452 CCAAACCCCAGCTAGTTCCATT 60.557 50.000 0.00 0.00 0.00 3.16
195 196 2.493278 CAAACCCCAGCTAGTTCCATTG 59.507 50.000 0.00 0.00 0.00 2.82
196 197 1.668826 ACCCCAGCTAGTTCCATTGA 58.331 50.000 0.00 0.00 0.00 2.57
197 198 1.561542 ACCCCAGCTAGTTCCATTGAG 59.438 52.381 0.00 0.00 0.00 3.02
198 199 1.673168 CCCAGCTAGTTCCATTGAGC 58.327 55.000 0.00 0.00 35.07 4.26
199 200 1.293924 CCAGCTAGTTCCATTGAGCG 58.706 55.000 0.00 0.00 39.96 5.03
200 201 0.654683 CAGCTAGTTCCATTGAGCGC 59.345 55.000 0.00 0.00 39.96 5.92
201 202 0.807667 AGCTAGTTCCATTGAGCGCG 60.808 55.000 0.00 0.00 39.96 6.86
202 203 1.638467 CTAGTTCCATTGAGCGCGC 59.362 57.895 26.66 26.66 0.00 6.86
203 204 1.079474 TAGTTCCATTGAGCGCGCA 60.079 52.632 35.10 10.65 0.00 6.09
204 205 1.358725 TAGTTCCATTGAGCGCGCAC 61.359 55.000 35.10 28.49 0.00 5.34
205 206 3.430862 TTCCATTGAGCGCGCACC 61.431 61.111 35.10 24.21 0.00 5.01
209 210 4.838152 ATTGAGCGCGCACCGGAT 62.838 61.111 35.10 17.48 37.44 4.18
211 212 2.916502 ATTGAGCGCGCACCGGATTA 62.917 55.000 35.10 6.90 37.44 1.75
212 213 3.627218 GAGCGCGCACCGGATTAC 61.627 66.667 35.10 8.52 37.44 1.89
213 214 4.143333 AGCGCGCACCGGATTACT 62.143 61.111 35.10 4.83 37.44 2.24
214 215 2.278989 GCGCGCACCGGATTACTA 60.279 61.111 29.10 0.00 37.44 1.82
215 216 1.663702 GCGCGCACCGGATTACTAT 60.664 57.895 29.10 0.00 37.44 2.12
216 217 1.219522 GCGCGCACCGGATTACTATT 61.220 55.000 29.10 0.00 37.44 1.73
217 218 0.782384 CGCGCACCGGATTACTATTC 59.218 55.000 9.46 0.00 0.00 1.75
218 219 1.602165 CGCGCACCGGATTACTATTCT 60.602 52.381 9.46 0.00 0.00 2.40
219 220 2.351060 CGCGCACCGGATTACTATTCTA 60.351 50.000 9.46 0.00 0.00 2.10
220 221 2.985139 GCGCACCGGATTACTATTCTAC 59.015 50.000 9.46 0.00 0.00 2.59
221 222 3.305199 GCGCACCGGATTACTATTCTACT 60.305 47.826 9.46 0.00 0.00 2.57
222 223 4.083110 GCGCACCGGATTACTATTCTACTA 60.083 45.833 9.46 0.00 0.00 1.82
223 224 5.563475 GCGCACCGGATTACTATTCTACTAA 60.563 44.000 9.46 0.00 0.00 2.24
224 225 6.618811 CGCACCGGATTACTATTCTACTAAT 58.381 40.000 9.46 0.00 0.00 1.73
225 226 6.746364 CGCACCGGATTACTATTCTACTAATC 59.254 42.308 9.46 0.00 0.00 1.75
226 227 7.034397 GCACCGGATTACTATTCTACTAATCC 58.966 42.308 9.46 5.83 41.10 3.01
227 228 7.309621 GCACCGGATTACTATTCTACTAATCCA 60.310 40.741 9.46 0.00 43.22 3.41
228 229 8.750298 CACCGGATTACTATTCTACTAATCCAT 58.250 37.037 9.46 1.83 43.22 3.41
229 230 8.968969 ACCGGATTACTATTCTACTAATCCATC 58.031 37.037 9.46 0.00 43.22 3.51
230 231 8.414778 CCGGATTACTATTCTACTAATCCATCC 58.585 40.741 0.00 0.00 43.22 3.51
231 232 8.129840 CGGATTACTATTCTACTAATCCATCCG 58.870 40.741 13.51 0.00 43.22 4.18
232 233 8.968969 GGATTACTATTCTACTAATCCATCCGT 58.031 37.037 9.76 0.00 42.84 4.69
236 237 8.480133 ACTATTCTACTAATCCATCCGTTTCT 57.520 34.615 0.00 0.00 0.00 2.52
237 238 9.584008 ACTATTCTACTAATCCATCCGTTTCTA 57.416 33.333 0.00 0.00 0.00 2.10
279 280 9.355215 AGAGATTTCAACAAGTAAGTACATACG 57.645 33.333 2.79 0.00 0.00 3.06
280 281 8.475331 AGATTTCAACAAGTAAGTACATACGG 57.525 34.615 2.79 2.75 0.00 4.02
281 282 8.308931 AGATTTCAACAAGTAAGTACATACGGA 58.691 33.333 2.79 0.00 0.00 4.69
282 283 7.878477 TTTCAACAAGTAAGTACATACGGAG 57.122 36.000 2.79 0.59 0.00 4.63
283 284 5.404946 TCAACAAGTAAGTACATACGGAGC 58.595 41.667 2.79 0.00 0.00 4.70
284 285 5.047872 TCAACAAGTAAGTACATACGGAGCA 60.048 40.000 2.79 0.00 0.00 4.26
285 286 5.395682 ACAAGTAAGTACATACGGAGCAA 57.604 39.130 2.79 0.00 0.00 3.91
286 287 5.786311 ACAAGTAAGTACATACGGAGCAAA 58.214 37.500 2.79 0.00 0.00 3.68
287 288 6.225318 ACAAGTAAGTACATACGGAGCAAAA 58.775 36.000 2.79 0.00 0.00 2.44
288 289 6.877322 ACAAGTAAGTACATACGGAGCAAAAT 59.123 34.615 2.79 0.00 0.00 1.82
289 290 8.036575 ACAAGTAAGTACATACGGAGCAAAATA 58.963 33.333 2.79 0.00 0.00 1.40
290 291 8.875803 CAAGTAAGTACATACGGAGCAAAATAA 58.124 33.333 2.79 0.00 0.00 1.40
291 292 9.439500 AAGTAAGTACATACGGAGCAAAATAAA 57.561 29.630 2.79 0.00 0.00 1.40
292 293 9.609346 AGTAAGTACATACGGAGCAAAATAAAT 57.391 29.630 2.79 0.00 0.00 1.40
293 294 9.646336 GTAAGTACATACGGAGCAAAATAAATG 57.354 33.333 0.00 0.00 0.00 2.32
294 295 8.500753 AAGTACATACGGAGCAAAATAAATGA 57.499 30.769 0.00 0.00 0.00 2.57
295 296 8.142994 AGTACATACGGAGCAAAATAAATGAG 57.857 34.615 0.00 0.00 0.00 2.90
296 297 5.821204 ACATACGGAGCAAAATAAATGAGC 58.179 37.500 0.00 0.00 0.00 4.26
297 298 3.782889 ACGGAGCAAAATAAATGAGCC 57.217 42.857 0.00 0.00 0.00 4.70
298 299 3.356290 ACGGAGCAAAATAAATGAGCCT 58.644 40.909 0.00 0.00 0.00 4.58
299 300 4.523083 ACGGAGCAAAATAAATGAGCCTA 58.477 39.130 0.00 0.00 0.00 3.93
300 301 5.133221 ACGGAGCAAAATAAATGAGCCTAT 58.867 37.500 0.00 0.00 0.00 2.57
301 302 6.296026 ACGGAGCAAAATAAATGAGCCTATA 58.704 36.000 0.00 0.00 0.00 1.31
302 303 6.204882 ACGGAGCAAAATAAATGAGCCTATAC 59.795 38.462 0.00 0.00 0.00 1.47
303 304 6.428159 CGGAGCAAAATAAATGAGCCTATACT 59.572 38.462 0.00 0.00 0.00 2.12
304 305 7.041098 CGGAGCAAAATAAATGAGCCTATACTT 60.041 37.037 0.00 0.00 0.00 2.24
305 306 8.633561 GGAGCAAAATAAATGAGCCTATACTTT 58.366 33.333 0.00 0.00 0.00 2.66
341 342 7.770366 ATATACATTCGTATGTGGTAGTCCA 57.230 36.000 16.91 0.00 44.56 4.02
342 343 6.665992 ATACATTCGTATGTGGTAGTCCAT 57.334 37.500 16.91 0.00 44.56 3.41
343 344 5.353394 ACATTCGTATGTGGTAGTCCATT 57.647 39.130 6.89 0.00 46.20 3.16
344 345 5.741011 ACATTCGTATGTGGTAGTCCATTT 58.259 37.500 6.89 0.00 46.20 2.32
345 346 5.584649 ACATTCGTATGTGGTAGTCCATTTG 59.415 40.000 6.89 0.00 46.20 2.32
346 347 5.408880 TTCGTATGTGGTAGTCCATTTGA 57.591 39.130 0.00 0.00 46.20 2.69
347 348 5.408880 TCGTATGTGGTAGTCCATTTGAA 57.591 39.130 0.00 0.00 46.20 2.69
348 349 5.795972 TCGTATGTGGTAGTCCATTTGAAA 58.204 37.500 0.00 0.00 46.20 2.69
349 350 6.411376 TCGTATGTGGTAGTCCATTTGAAAT 58.589 36.000 0.00 0.00 46.20 2.17
350 351 6.537301 TCGTATGTGGTAGTCCATTTGAAATC 59.463 38.462 0.00 0.00 46.20 2.17
351 352 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
352 353 7.065803 CGTATGTGGTAGTCCATTTGAAATCTT 59.934 37.037 0.00 0.00 46.20 2.40
353 354 9.391006 GTATGTGGTAGTCCATTTGAAATCTTA 57.609 33.333 0.00 0.00 46.20 2.10
354 355 8.877864 ATGTGGTAGTCCATTTGAAATCTTAA 57.122 30.769 0.00 0.00 46.20 1.85
355 356 8.698973 TGTGGTAGTCCATTTGAAATCTTAAA 57.301 30.769 0.00 0.00 46.20 1.52
356 357 9.137459 TGTGGTAGTCCATTTGAAATCTTAAAA 57.863 29.630 0.00 0.00 46.20 1.52
357 358 9.974980 GTGGTAGTCCATTTGAAATCTTAAAAA 57.025 29.630 0.00 0.00 46.20 1.94
362 363 8.630037 AGTCCATTTGAAATCTTAAAAAGACGT 58.370 29.630 0.00 0.00 41.01 4.34
363 364 9.887406 GTCCATTTGAAATCTTAAAAAGACGTA 57.113 29.630 0.00 0.00 41.01 3.57
379 380 7.998753 AAAGACGTATATTTAGAAACGGAGG 57.001 36.000 0.00 0.00 39.57 4.30
380 381 6.949352 AGACGTATATTTAGAAACGGAGGA 57.051 37.500 0.00 0.00 39.57 3.71
381 382 7.338800 AGACGTATATTTAGAAACGGAGGAA 57.661 36.000 0.00 0.00 39.57 3.36
382 383 7.424001 AGACGTATATTTAGAAACGGAGGAAG 58.576 38.462 0.00 0.00 39.57 3.46
383 384 7.067981 AGACGTATATTTAGAAACGGAGGAAGT 59.932 37.037 0.00 0.00 39.57 3.01
384 385 8.225603 ACGTATATTTAGAAACGGAGGAAGTA 57.774 34.615 0.00 0.00 39.57 2.24
385 386 8.131731 ACGTATATTTAGAAACGGAGGAAGTAC 58.868 37.037 0.00 0.00 39.57 2.73
386 387 8.348507 CGTATATTTAGAAACGGAGGAAGTACT 58.651 37.037 0.00 0.00 0.00 2.73
390 391 6.705863 TTAGAAACGGAGGAAGTACTATCC 57.294 41.667 13.28 13.28 37.22 2.59
391 392 4.607239 AGAAACGGAGGAAGTACTATCCA 58.393 43.478 19.72 0.00 39.55 3.41
392 393 5.209659 AGAAACGGAGGAAGTACTATCCAT 58.790 41.667 19.72 5.87 39.55 3.41
393 394 4.939052 AACGGAGGAAGTACTATCCATG 57.061 45.455 19.72 13.38 39.55 3.66
394 395 2.628657 ACGGAGGAAGTACTATCCATGC 59.371 50.000 19.72 12.14 39.55 4.06
395 396 2.628178 CGGAGGAAGTACTATCCATGCA 59.372 50.000 19.72 0.00 39.55 3.96
396 397 3.259374 CGGAGGAAGTACTATCCATGCAT 59.741 47.826 19.72 0.00 39.55 3.96
397 398 4.573900 GGAGGAAGTACTATCCATGCATG 58.426 47.826 20.19 20.19 39.55 4.06
398 399 3.999663 GAGGAAGTACTATCCATGCATGC 59.000 47.826 21.69 11.82 39.55 4.06
399 400 3.392285 AGGAAGTACTATCCATGCATGCA 59.608 43.478 25.04 25.04 39.55 3.96
400 401 4.042560 AGGAAGTACTATCCATGCATGCAT 59.957 41.667 27.46 27.46 39.55 3.96
408 409 2.440613 ATGCATGCATGGCCGTGA 60.441 55.556 31.74 13.90 35.03 4.35
409 410 1.830847 ATGCATGCATGGCCGTGAT 60.831 52.632 31.74 15.55 35.03 3.06
410 411 2.027024 GCATGCATGGCCGTGATG 59.973 61.111 29.54 25.35 0.00 3.07
411 412 2.777972 GCATGCATGGCCGTGATGT 61.778 57.895 29.54 10.15 0.00 3.06
412 413 1.065109 CATGCATGGCCGTGATGTG 59.935 57.895 29.54 17.95 0.00 3.21
413 414 1.077572 ATGCATGGCCGTGATGTGA 60.078 52.632 29.54 6.34 0.00 3.58
414 415 1.378882 ATGCATGGCCGTGATGTGAC 61.379 55.000 29.54 10.04 0.00 3.67
415 416 1.746615 GCATGGCCGTGATGTGACT 60.747 57.895 29.54 0.00 0.00 3.41
416 417 1.709147 GCATGGCCGTGATGTGACTC 61.709 60.000 29.54 4.07 0.00 3.36
417 418 1.091771 CATGGCCGTGATGTGACTCC 61.092 60.000 21.08 0.00 0.00 3.85
418 419 2.125106 GGCCGTGATGTGACTCCC 60.125 66.667 0.00 0.00 0.00 4.30
419 420 2.662596 GCCGTGATGTGACTCCCA 59.337 61.111 0.00 0.00 0.00 4.37
420 421 1.003839 GCCGTGATGTGACTCCCAA 60.004 57.895 0.00 0.00 0.00 4.12
421 422 0.605319 GCCGTGATGTGACTCCCAAA 60.605 55.000 0.00 0.00 0.00 3.28
422 423 1.890876 CCGTGATGTGACTCCCAAAA 58.109 50.000 0.00 0.00 0.00 2.44
423 424 1.535462 CCGTGATGTGACTCCCAAAAC 59.465 52.381 0.00 0.00 0.00 2.43
424 425 2.217750 CGTGATGTGACTCCCAAAACA 58.782 47.619 0.00 0.00 0.00 2.83
425 426 2.813754 CGTGATGTGACTCCCAAAACAT 59.186 45.455 0.00 0.00 36.00 2.71
426 427 3.253188 CGTGATGTGACTCCCAAAACATT 59.747 43.478 0.00 0.00 33.51 2.71
427 428 4.261572 CGTGATGTGACTCCCAAAACATTT 60.262 41.667 0.00 0.00 33.51 2.32
428 429 5.222631 GTGATGTGACTCCCAAAACATTTC 58.777 41.667 0.00 0.00 33.51 2.17
429 430 4.892345 TGATGTGACTCCCAAAACATTTCA 59.108 37.500 0.00 0.00 33.51 2.69
430 431 4.647424 TGTGACTCCCAAAACATTTCAC 57.353 40.909 0.00 0.00 33.91 3.18
431 432 4.277476 TGTGACTCCCAAAACATTTCACT 58.723 39.130 0.00 0.00 34.33 3.41
432 433 4.338118 TGTGACTCCCAAAACATTTCACTC 59.662 41.667 0.00 0.00 34.33 3.51
433 434 4.338118 GTGACTCCCAAAACATTTCACTCA 59.662 41.667 0.00 0.00 31.25 3.41
434 435 4.338118 TGACTCCCAAAACATTTCACTCAC 59.662 41.667 0.00 0.00 0.00 3.51
435 436 4.536765 ACTCCCAAAACATTTCACTCACT 58.463 39.130 0.00 0.00 0.00 3.41
436 437 4.956075 ACTCCCAAAACATTTCACTCACTT 59.044 37.500 0.00 0.00 0.00 3.16
437 438 5.422012 ACTCCCAAAACATTTCACTCACTTT 59.578 36.000 0.00 0.00 0.00 2.66
438 439 6.605594 ACTCCCAAAACATTTCACTCACTTTA 59.394 34.615 0.00 0.00 0.00 1.85
439 440 7.038154 TCCCAAAACATTTCACTCACTTTAG 57.962 36.000 0.00 0.00 0.00 1.85
440 441 5.691754 CCCAAAACATTTCACTCACTTTAGC 59.308 40.000 0.00 0.00 0.00 3.09
441 442 6.461509 CCCAAAACATTTCACTCACTTTAGCT 60.462 38.462 0.00 0.00 0.00 3.32
442 443 6.638468 CCAAAACATTTCACTCACTTTAGCTC 59.362 38.462 0.00 0.00 0.00 4.09
443 444 5.948992 AACATTTCACTCACTTTAGCTCC 57.051 39.130 0.00 0.00 0.00 4.70
444 445 4.327680 ACATTTCACTCACTTTAGCTCCC 58.672 43.478 0.00 0.00 0.00 4.30
445 446 4.202461 ACATTTCACTCACTTTAGCTCCCA 60.202 41.667 0.00 0.00 0.00 4.37
446 447 3.402628 TTCACTCACTTTAGCTCCCAC 57.597 47.619 0.00 0.00 0.00 4.61
447 448 2.325484 TCACTCACTTTAGCTCCCACA 58.675 47.619 0.00 0.00 0.00 4.17
448 449 2.703536 TCACTCACTTTAGCTCCCACAA 59.296 45.455 0.00 0.00 0.00 3.33
449 450 2.808543 CACTCACTTTAGCTCCCACAAC 59.191 50.000 0.00 0.00 0.00 3.32
450 451 2.438021 ACTCACTTTAGCTCCCACAACA 59.562 45.455 0.00 0.00 0.00 3.33
451 452 3.070018 CTCACTTTAGCTCCCACAACAG 58.930 50.000 0.00 0.00 0.00 3.16
452 453 2.438021 TCACTTTAGCTCCCACAACAGT 59.562 45.455 0.00 0.00 0.00 3.55
453 454 2.549754 CACTTTAGCTCCCACAACAGTG 59.450 50.000 0.00 0.00 0.00 3.66
460 461 3.749981 CCACAACAGTGGCCTGAC 58.250 61.111 3.32 0.00 45.68 3.51
461 462 1.898574 CCACAACAGTGGCCTGACC 60.899 63.158 3.32 0.00 45.68 4.02
462 463 1.898574 CACAACAGTGGCCTGACCC 60.899 63.158 3.32 0.00 41.50 4.46
463 464 2.382770 ACAACAGTGGCCTGACCCA 61.383 57.895 3.32 0.00 41.50 4.51
464 465 1.152777 CAACAGTGGCCTGACCCAA 60.153 57.895 3.32 0.00 41.50 4.12
465 466 1.151450 AACAGTGGCCTGACCCAAG 59.849 57.895 3.32 0.00 41.50 3.61
466 467 1.645402 AACAGTGGCCTGACCCAAGT 61.645 55.000 3.32 0.00 41.50 3.16
467 468 1.601759 CAGTGGCCTGACCCAAGTG 60.602 63.158 3.32 0.00 41.50 3.16
468 469 2.985847 GTGGCCTGACCCAAGTGC 60.986 66.667 3.32 0.00 36.46 4.40
469 470 4.284550 TGGCCTGACCCAAGTGCC 62.285 66.667 3.32 0.00 42.49 5.01
470 471 4.284550 GGCCTGACCCAAGTGCCA 62.285 66.667 0.00 0.00 41.76 4.92
471 472 2.203480 GCCTGACCCAAGTGCCAA 60.203 61.111 0.00 0.00 0.00 4.52
472 473 1.832167 GCCTGACCCAAGTGCCAAA 60.832 57.895 0.00 0.00 0.00 3.28
473 474 2.041153 CCTGACCCAAGTGCCAAAC 58.959 57.895 0.00 0.00 0.00 2.93
474 475 1.463553 CCTGACCCAAGTGCCAAACC 61.464 60.000 0.00 0.00 0.00 3.27
475 476 1.456705 TGACCCAAGTGCCAAACCC 60.457 57.895 0.00 0.00 0.00 4.11
476 477 2.520741 ACCCAAGTGCCAAACCCG 60.521 61.111 0.00 0.00 0.00 5.28
477 478 3.302344 CCCAAGTGCCAAACCCGG 61.302 66.667 0.00 0.00 0.00 5.73
478 479 2.520741 CCAAGTGCCAAACCCGGT 60.521 61.111 0.00 0.00 0.00 5.28
479 480 2.131067 CCAAGTGCCAAACCCGGTT 61.131 57.895 0.00 0.00 0.00 4.44
480 481 1.067250 CAAGTGCCAAACCCGGTTG 59.933 57.895 2.79 0.00 0.00 3.77
481 482 1.076632 AAGTGCCAAACCCGGTTGA 60.077 52.632 2.79 0.00 0.00 3.18
482 483 1.388837 AAGTGCCAAACCCGGTTGAC 61.389 55.000 2.79 0.00 0.00 3.18
483 484 2.519780 TGCCAAACCCGGTTGACC 60.520 61.111 2.79 0.00 0.00 4.02
484 485 2.519780 GCCAAACCCGGTTGACCA 60.520 61.111 2.79 0.00 35.14 4.02
485 486 2.852180 GCCAAACCCGGTTGACCAC 61.852 63.158 2.79 0.00 35.14 4.16
486 487 1.152839 CCAAACCCGGTTGACCACT 60.153 57.895 2.79 0.00 35.14 4.00
487 488 0.753848 CCAAACCCGGTTGACCACTT 60.754 55.000 2.79 0.00 35.14 3.16
488 489 1.107945 CAAACCCGGTTGACCACTTT 58.892 50.000 2.79 0.00 35.14 2.66
489 490 1.107945 AAACCCGGTTGACCACTTTG 58.892 50.000 2.79 0.00 35.14 2.77
490 491 1.388837 AACCCGGTTGACCACTTTGC 61.389 55.000 0.69 0.00 35.14 3.68
491 492 1.826054 CCCGGTTGACCACTTTGCA 60.826 57.895 0.00 0.00 35.14 4.08
492 493 1.654220 CCGGTTGACCACTTTGCAG 59.346 57.895 0.00 0.00 35.14 4.41
493 494 0.817634 CCGGTTGACCACTTTGCAGA 60.818 55.000 0.00 0.00 35.14 4.26
494 495 1.238439 CGGTTGACCACTTTGCAGAT 58.762 50.000 0.51 0.00 35.14 2.90
495 496 1.197721 CGGTTGACCACTTTGCAGATC 59.802 52.381 0.51 0.00 35.14 2.75
496 497 2.229792 GGTTGACCACTTTGCAGATCA 58.770 47.619 0.00 0.00 35.64 2.92
497 498 2.622942 GGTTGACCACTTTGCAGATCAA 59.377 45.455 0.00 0.00 35.64 2.57
498 499 3.304928 GGTTGACCACTTTGCAGATCAAG 60.305 47.826 0.00 0.00 34.25 3.02
499 500 3.213206 TGACCACTTTGCAGATCAAGT 57.787 42.857 0.00 0.00 35.84 3.16
500 501 3.554934 TGACCACTTTGCAGATCAAGTT 58.445 40.909 0.00 0.00 35.84 2.66
501 502 3.565482 TGACCACTTTGCAGATCAAGTTC 59.435 43.478 0.00 0.00 35.84 3.01
502 503 2.887152 ACCACTTTGCAGATCAAGTTCC 59.113 45.455 0.00 0.00 35.84 3.62
503 504 2.095567 CCACTTTGCAGATCAAGTTCCG 60.096 50.000 0.00 0.00 35.84 4.30
504 505 2.807967 CACTTTGCAGATCAAGTTCCGA 59.192 45.455 0.00 0.00 35.84 4.55
505 506 3.250762 CACTTTGCAGATCAAGTTCCGAA 59.749 43.478 0.00 0.00 35.84 4.30
506 507 3.882888 ACTTTGCAGATCAAGTTCCGAAA 59.117 39.130 0.00 0.00 35.84 3.46
507 508 3.896648 TTGCAGATCAAGTTCCGAAAC 57.103 42.857 0.00 0.00 35.50 2.78
522 523 8.631480 AGTTCCGAAACTTATGGATTTAGTTT 57.369 30.769 0.00 0.00 43.28 2.66
523 524 9.074576 AGTTCCGAAACTTATGGATTTAGTTTT 57.925 29.630 0.00 0.00 43.28 2.43
550 551 8.538409 AAGCTTAACAATTTTGTCATTCATCC 57.462 30.769 0.00 0.00 41.31 3.51
551 552 7.099120 AGCTTAACAATTTTGTCATTCATCCC 58.901 34.615 0.00 0.00 41.31 3.85
552 553 7.038799 AGCTTAACAATTTTGTCATTCATCCCT 60.039 33.333 0.00 0.00 41.31 4.20
553 554 8.250332 GCTTAACAATTTTGTCATTCATCCCTA 58.750 33.333 0.00 0.00 41.31 3.53
564 565 8.877864 TGTCATTCATCCCTATTAAGTTTTGT 57.122 30.769 0.00 0.00 0.00 2.83
565 566 8.956426 TGTCATTCATCCCTATTAAGTTTTGTC 58.044 33.333 0.00 0.00 0.00 3.18
566 567 8.956426 GTCATTCATCCCTATTAAGTTTTGTCA 58.044 33.333 0.00 0.00 0.00 3.58
567 568 9.177608 TCATTCATCCCTATTAAGTTTTGTCAG 57.822 33.333 0.00 0.00 0.00 3.51
568 569 8.960591 CATTCATCCCTATTAAGTTTTGTCAGT 58.039 33.333 0.00 0.00 0.00 3.41
569 570 8.934023 TTCATCCCTATTAAGTTTTGTCAGTT 57.066 30.769 0.00 0.00 0.00 3.16
570 571 8.335532 TCATCCCTATTAAGTTTTGTCAGTTG 57.664 34.615 0.00 0.00 0.00 3.16
571 572 8.160765 TCATCCCTATTAAGTTTTGTCAGTTGA 58.839 33.333 0.00 0.00 0.00 3.18
572 573 8.792633 CATCCCTATTAAGTTTTGTCAGTTGAA 58.207 33.333 0.00 0.00 0.00 2.69
573 574 8.754991 TCCCTATTAAGTTTTGTCAGTTGAAA 57.245 30.769 0.00 0.00 0.00 2.69
574 575 8.846211 TCCCTATTAAGTTTTGTCAGTTGAAAG 58.154 33.333 0.00 0.00 0.00 2.62
575 576 8.630037 CCCTATTAAGTTTTGTCAGTTGAAAGT 58.370 33.333 0.00 0.00 0.00 2.66
580 581 9.710979 TTAAGTTTTGTCAGTTGAAAGTTATCG 57.289 29.630 0.00 0.00 31.78 2.92
581 582 7.548196 AGTTTTGTCAGTTGAAAGTTATCGA 57.452 32.000 0.00 0.00 0.00 3.59
582 583 7.981142 AGTTTTGTCAGTTGAAAGTTATCGAA 58.019 30.769 0.00 0.00 0.00 3.71
583 584 8.122952 AGTTTTGTCAGTTGAAAGTTATCGAAG 58.877 33.333 0.00 0.00 0.00 3.79
584 585 7.548196 TTTGTCAGTTGAAAGTTATCGAAGT 57.452 32.000 0.00 0.00 0.00 3.01
585 586 7.548196 TTGTCAGTTGAAAGTTATCGAAGTT 57.452 32.000 0.00 0.00 0.00 2.66
586 587 7.548196 TGTCAGTTGAAAGTTATCGAAGTTT 57.452 32.000 0.00 0.00 40.25 2.66
587 588 8.651391 TGTCAGTTGAAAGTTATCGAAGTTTA 57.349 30.769 0.00 0.00 38.14 2.01
588 589 9.100554 TGTCAGTTGAAAGTTATCGAAGTTTAA 57.899 29.630 0.00 0.00 38.14 1.52
589 590 9.925268 GTCAGTTGAAAGTTATCGAAGTTTAAA 57.075 29.630 0.00 0.00 38.14 1.52
728 730 0.040692 CGACTCGTTCCGTGAACTCA 60.041 55.000 12.80 2.01 40.05 3.41
904 933 3.749064 GGCGACAGAGAGCACGGA 61.749 66.667 0.00 0.00 34.54 4.69
986 1048 0.322546 GTGGCGTTGAGATCCCCTTT 60.323 55.000 0.00 0.00 0.00 3.11
991 1053 1.614317 CGTTGAGATCCCCTTTGGCTT 60.614 52.381 0.00 0.00 0.00 4.35
1166 1229 0.326595 TGCAGCGAGAATGGGGTAAA 59.673 50.000 0.00 0.00 0.00 2.01
1434 1497 6.533730 TGAGCTTAGGATGTTGAAGAAGAAA 58.466 36.000 0.00 0.00 0.00 2.52
1489 1555 5.559148 ACCCATTTGCAAATACTTTTGGA 57.441 34.783 23.69 0.00 42.09 3.53
1493 1559 6.092533 CCCATTTGCAAATACTTTTGGACATC 59.907 38.462 23.69 0.00 42.05 3.06
1541 1607 9.139174 GGTTGTAATGTTGAAAATGTATGGAAG 57.861 33.333 0.00 0.00 0.00 3.46
1814 1889 2.704065 GGCTAGACTAATGGGCCAACTA 59.296 50.000 11.89 4.22 42.08 2.24
2082 2209 4.007457 GCTCTTTGCCATCTGCCA 57.993 55.556 0.00 0.00 40.16 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.199789 GTTTGCTTCATGGCGTGATGA 59.800 47.619 22.57 4.47 36.54 2.92
1 2 1.621107 GTTTGCTTCATGGCGTGATG 58.379 50.000 10.74 13.84 36.54 3.07
4 5 1.080569 GGGTTTGCTTCATGGCGTG 60.081 57.895 0.00 0.00 34.52 5.34
6 7 0.318120 AAAGGGTTTGCTTCATGGCG 59.682 50.000 0.00 0.00 34.52 5.69
7 8 2.549064 AAAAGGGTTTGCTTCATGGC 57.451 45.000 0.00 0.00 0.00 4.40
16 17 0.836606 ACAGGGGCAAAAAGGGTTTG 59.163 50.000 0.00 0.00 0.00 2.93
17 18 0.836606 CACAGGGGCAAAAAGGGTTT 59.163 50.000 0.00 0.00 0.00 3.27
18 19 1.695114 GCACAGGGGCAAAAAGGGTT 61.695 55.000 0.00 0.00 0.00 4.11
19 20 2.140138 GCACAGGGGCAAAAAGGGT 61.140 57.895 0.00 0.00 0.00 4.34
20 21 2.139484 TGCACAGGGGCAAAAAGGG 61.139 57.895 0.00 0.00 41.65 3.95
21 22 3.548488 TGCACAGGGGCAAAAAGG 58.452 55.556 0.00 0.00 41.65 3.11
28 29 3.755628 CACAGCATGCACAGGGGC 61.756 66.667 21.98 0.00 42.53 5.80
37 38 2.127003 CACGCACAGCACAGCATG 60.127 61.111 0.00 0.00 46.00 4.06
38 39 4.034258 GCACGCACAGCACAGCAT 62.034 61.111 0.00 0.00 0.00 3.79
40 41 4.380628 GAGCACGCACAGCACAGC 62.381 66.667 0.00 0.00 0.00 4.40
41 42 2.236803 GATGAGCACGCACAGCACAG 62.237 60.000 0.00 0.00 36.10 3.66
42 43 2.281002 ATGAGCACGCACAGCACA 60.281 55.556 0.00 0.00 37.02 4.57
43 44 2.236803 CTGATGAGCACGCACAGCAC 62.237 60.000 3.26 0.00 30.64 4.40
44 45 2.030862 TGATGAGCACGCACAGCA 59.969 55.556 3.26 3.26 31.23 4.41
45 46 2.783275 CTGATGAGCACGCACAGC 59.217 61.111 0.00 0.00 0.00 4.40
46 47 2.783275 GCTGATGAGCACGCACAG 59.217 61.111 0.00 0.00 45.46 3.66
54 55 2.959071 GTCTCGCGGCTGATGAGC 60.959 66.667 6.13 0.00 45.40 4.26
55 56 1.875813 GTGTCTCGCGGCTGATGAG 60.876 63.158 6.13 2.39 0.00 2.90
56 57 2.153547 TTGTGTCTCGCGGCTGATGA 62.154 55.000 6.13 0.00 0.00 2.92
57 58 1.690283 CTTGTGTCTCGCGGCTGATG 61.690 60.000 6.13 0.00 0.00 3.07
58 59 1.446792 CTTGTGTCTCGCGGCTGAT 60.447 57.895 6.13 0.00 0.00 2.90
59 60 2.049156 CTTGTGTCTCGCGGCTGA 60.049 61.111 6.13 0.00 0.00 4.26
60 61 3.782244 GCTTGTGTCTCGCGGCTG 61.782 66.667 6.13 0.00 0.00 4.85
65 66 3.876589 TTCCCGGCTTGTGTCTCGC 62.877 63.158 0.00 0.00 0.00 5.03
66 67 0.882927 TTTTCCCGGCTTGTGTCTCG 60.883 55.000 0.00 0.00 0.00 4.04
67 68 0.591659 GTTTTCCCGGCTTGTGTCTC 59.408 55.000 0.00 0.00 0.00 3.36
68 69 0.182775 AGTTTTCCCGGCTTGTGTCT 59.817 50.000 0.00 0.00 0.00 3.41
69 70 1.029681 AAGTTTTCCCGGCTTGTGTC 58.970 50.000 0.00 0.00 0.00 3.67
70 71 0.744281 CAAGTTTTCCCGGCTTGTGT 59.256 50.000 9.79 0.00 36.00 3.72
71 72 0.597377 GCAAGTTTTCCCGGCTTGTG 60.597 55.000 16.84 1.60 40.99 3.33
72 73 1.739667 GCAAGTTTTCCCGGCTTGT 59.260 52.632 16.84 0.00 40.99 3.16
73 74 1.371635 CGCAAGTTTTCCCGGCTTG 60.372 57.895 12.79 12.79 41.61 4.01
74 75 1.527380 TCGCAAGTTTTCCCGGCTT 60.527 52.632 0.00 0.00 39.48 4.35
75 76 2.112297 TCGCAAGTTTTCCCGGCT 59.888 55.556 0.00 0.00 39.48 5.52
76 77 2.254350 GTCGCAAGTTTTCCCGGC 59.746 61.111 0.00 0.00 39.48 6.13
77 78 1.852067 CTGGTCGCAAGTTTTCCCGG 61.852 60.000 0.00 0.00 39.48 5.73
78 79 0.882927 TCTGGTCGCAAGTTTTCCCG 60.883 55.000 0.00 0.00 39.48 5.14
79 80 0.591659 GTCTGGTCGCAAGTTTTCCC 59.408 55.000 0.00 0.00 39.48 3.97
80 81 0.591659 GGTCTGGTCGCAAGTTTTCC 59.408 55.000 0.00 0.00 39.48 3.13
81 82 1.305201 TGGTCTGGTCGCAAGTTTTC 58.695 50.000 0.00 0.00 39.48 2.29
82 83 1.404035 GTTGGTCTGGTCGCAAGTTTT 59.596 47.619 0.00 0.00 39.48 2.43
83 84 1.021968 GTTGGTCTGGTCGCAAGTTT 58.978 50.000 0.00 0.00 39.48 2.66
84 85 0.818040 GGTTGGTCTGGTCGCAAGTT 60.818 55.000 0.00 0.00 39.48 2.66
85 86 1.227853 GGTTGGTCTGGTCGCAAGT 60.228 57.895 0.00 0.00 39.48 3.16
86 87 2.317609 CGGTTGGTCTGGTCGCAAG 61.318 63.158 0.00 0.00 0.00 4.01
87 88 2.280524 CGGTTGGTCTGGTCGCAA 60.281 61.111 0.00 0.00 0.00 4.85
88 89 4.980805 GCGGTTGGTCTGGTCGCA 62.981 66.667 0.00 0.00 44.87 5.10
90 91 3.605749 ATGGCGGTTGGTCTGGTCG 62.606 63.158 0.00 0.00 0.00 4.79
91 92 0.035820 TAATGGCGGTTGGTCTGGTC 60.036 55.000 0.00 0.00 0.00 4.02
92 93 0.322187 GTAATGGCGGTTGGTCTGGT 60.322 55.000 0.00 0.00 0.00 4.00
93 94 0.035439 AGTAATGGCGGTTGGTCTGG 60.035 55.000 0.00 0.00 0.00 3.86
94 95 2.684001 TAGTAATGGCGGTTGGTCTG 57.316 50.000 0.00 0.00 0.00 3.51
95 96 5.512576 GGATTATAGTAATGGCGGTTGGTCT 60.513 44.000 0.00 0.00 0.00 3.85
96 97 4.694037 GGATTATAGTAATGGCGGTTGGTC 59.306 45.833 0.00 0.00 0.00 4.02
97 98 4.506095 GGGATTATAGTAATGGCGGTTGGT 60.506 45.833 0.00 0.00 0.00 3.67
98 99 4.007659 GGGATTATAGTAATGGCGGTTGG 58.992 47.826 0.00 0.00 0.00 3.77
99 100 3.682858 CGGGATTATAGTAATGGCGGTTG 59.317 47.826 0.00 0.00 0.00 3.77
100 101 3.307199 CCGGGATTATAGTAATGGCGGTT 60.307 47.826 0.00 0.00 0.00 4.44
101 102 2.235402 CCGGGATTATAGTAATGGCGGT 59.765 50.000 0.00 0.00 0.00 5.68
102 103 2.235402 ACCGGGATTATAGTAATGGCGG 59.765 50.000 6.32 0.00 0.00 6.13
103 104 3.604875 ACCGGGATTATAGTAATGGCG 57.395 47.619 6.32 0.00 0.00 5.69
104 105 4.468868 ACCTACCGGGATTATAGTAATGGC 59.531 45.833 6.32 0.00 38.76 4.40
105 106 6.616237 AACCTACCGGGATTATAGTAATGG 57.384 41.667 6.32 0.00 38.76 3.16
106 107 7.386848 CACAAACCTACCGGGATTATAGTAATG 59.613 40.741 6.32 0.00 38.76 1.90
107 108 7.071572 ACACAAACCTACCGGGATTATAGTAAT 59.928 37.037 6.32 0.00 38.76 1.89
108 109 6.383726 ACACAAACCTACCGGGATTATAGTAA 59.616 38.462 6.32 0.00 38.76 2.24
109 110 5.898972 ACACAAACCTACCGGGATTATAGTA 59.101 40.000 6.32 0.00 38.76 1.82
110 111 4.718276 ACACAAACCTACCGGGATTATAGT 59.282 41.667 6.32 0.00 38.76 2.12
111 112 5.286267 ACACAAACCTACCGGGATTATAG 57.714 43.478 6.32 0.00 38.76 1.31
112 113 4.101430 GGACACAAACCTACCGGGATTATA 59.899 45.833 6.32 0.00 38.76 0.98
113 114 3.118149 GGACACAAACCTACCGGGATTAT 60.118 47.826 6.32 0.00 38.76 1.28
114 115 2.236893 GGACACAAACCTACCGGGATTA 59.763 50.000 6.32 0.00 38.76 1.75
115 116 1.003928 GGACACAAACCTACCGGGATT 59.996 52.381 6.32 0.00 38.76 3.01
116 117 0.616891 GGACACAAACCTACCGGGAT 59.383 55.000 6.32 0.00 38.76 3.85
117 118 0.472352 AGGACACAAACCTACCGGGA 60.472 55.000 6.32 0.00 38.76 5.14
118 119 1.269012 TAGGACACAAACCTACCGGG 58.731 55.000 6.32 0.00 38.76 5.73
119 120 2.613725 GGTTAGGACACAAACCTACCGG 60.614 54.545 0.00 0.00 41.63 5.28
120 121 2.691927 GGTTAGGACACAAACCTACCG 58.308 52.381 0.00 0.00 41.63 4.02
121 122 2.299867 TCGGTTAGGACACAAACCTACC 59.700 50.000 0.00 0.00 42.51 3.18
122 123 3.320626 GTCGGTTAGGACACAAACCTAC 58.679 50.000 0.00 0.00 42.51 3.18
123 124 2.299867 GGTCGGTTAGGACACAAACCTA 59.700 50.000 3.03 0.00 42.51 3.08
124 125 1.071228 GGTCGGTTAGGACACAAACCT 59.929 52.381 3.03 0.00 42.51 3.50
125 126 1.516161 GGTCGGTTAGGACACAAACC 58.484 55.000 0.00 0.00 41.48 3.27
126 127 1.142474 CGGTCGGTTAGGACACAAAC 58.858 55.000 0.00 0.00 38.70 2.93
127 128 0.600782 GCGGTCGGTTAGGACACAAA 60.601 55.000 0.00 0.00 38.70 2.83
128 129 1.005867 GCGGTCGGTTAGGACACAA 60.006 57.895 0.00 0.00 38.70 3.33
129 130 2.652530 GCGGTCGGTTAGGACACA 59.347 61.111 0.00 0.00 38.70 3.72
130 131 2.125793 GGCGGTCGGTTAGGACAC 60.126 66.667 0.00 0.00 38.70 3.67
131 132 2.497792 TAGGGCGGTCGGTTAGGACA 62.498 60.000 0.00 0.00 38.70 4.02
132 133 1.322538 TTAGGGCGGTCGGTTAGGAC 61.323 60.000 0.00 0.00 36.18 3.85
133 134 0.397535 ATTAGGGCGGTCGGTTAGGA 60.398 55.000 0.00 0.00 0.00 2.94
134 135 0.033090 GATTAGGGCGGTCGGTTAGG 59.967 60.000 0.00 0.00 0.00 2.69
135 136 0.318445 CGATTAGGGCGGTCGGTTAG 60.318 60.000 0.00 0.00 0.00 2.34
136 137 1.037030 ACGATTAGGGCGGTCGGTTA 61.037 55.000 0.00 0.00 39.53 2.85
137 138 2.288788 GACGATTAGGGCGGTCGGTT 62.289 60.000 0.00 0.00 39.53 4.44
138 139 2.757099 ACGATTAGGGCGGTCGGT 60.757 61.111 0.00 0.00 39.53 4.69
139 140 2.027169 GACGATTAGGGCGGTCGG 59.973 66.667 0.00 0.00 39.53 4.79
140 141 2.353145 CGACGATTAGGGCGGTCG 60.353 66.667 0.00 0.00 40.91 4.79
141 142 2.657620 GCGACGATTAGGGCGGTC 60.658 66.667 0.00 0.00 0.00 4.79
142 143 2.694829 GATGCGACGATTAGGGCGGT 62.695 60.000 0.00 0.00 0.00 5.68
143 144 2.022129 GATGCGACGATTAGGGCGG 61.022 63.158 0.00 0.00 0.00 6.13
144 145 0.667487 ATGATGCGACGATTAGGGCG 60.667 55.000 0.00 0.00 0.00 6.13
145 146 0.792640 CATGATGCGACGATTAGGGC 59.207 55.000 0.00 0.00 0.00 5.19
146 147 0.792640 GCATGATGCGACGATTAGGG 59.207 55.000 0.00 0.00 31.71 3.53
156 157 5.473305 GTTTGGCAAAACAGCATGATGCG 62.473 47.826 15.29 9.54 44.30 4.73
157 158 1.798283 TTGGCAAAACAGCATGATGC 58.202 45.000 11.67 9.89 45.46 3.91
158 159 2.481185 GGTTTGGCAAAACAGCATGATG 59.519 45.455 22.54 9.94 46.30 3.07
159 160 2.550639 GGGTTTGGCAAAACAGCATGAT 60.551 45.455 27.62 0.00 46.30 2.45
160 161 1.202627 GGGTTTGGCAAAACAGCATGA 60.203 47.619 27.62 0.00 46.30 3.07
161 162 1.228533 GGGTTTGGCAAAACAGCATG 58.771 50.000 27.62 0.00 46.30 4.06
162 163 0.108396 GGGGTTTGGCAAAACAGCAT 59.892 50.000 27.62 0.00 46.30 3.79
163 164 1.267574 TGGGGTTTGGCAAAACAGCA 61.268 50.000 27.62 9.78 46.30 4.41
164 165 0.532640 CTGGGGTTTGGCAAAACAGC 60.533 55.000 27.62 12.43 46.30 4.40
165 166 0.532640 GCTGGGGTTTGGCAAAACAG 60.533 55.000 27.62 25.77 46.30 3.16
166 167 0.980231 AGCTGGGGTTTGGCAAAACA 60.980 50.000 27.62 18.53 46.30 2.83
167 168 1.000843 CTAGCTGGGGTTTGGCAAAAC 59.999 52.381 19.59 19.59 44.19 2.43
168 169 1.337118 CTAGCTGGGGTTTGGCAAAA 58.663 50.000 15.29 0.00 0.00 2.44
169 170 0.187361 ACTAGCTGGGGTTTGGCAAA 59.813 50.000 8.93 8.93 0.00 3.68
170 171 0.187361 AACTAGCTGGGGTTTGGCAA 59.813 50.000 0.85 0.00 0.00 4.52
171 172 0.251165 GAACTAGCTGGGGTTTGGCA 60.251 55.000 0.85 0.00 0.00 4.92
172 173 0.965866 GGAACTAGCTGGGGTTTGGC 60.966 60.000 0.85 0.00 0.00 4.52
173 174 0.404040 TGGAACTAGCTGGGGTTTGG 59.596 55.000 0.85 0.00 0.00 3.28
174 175 2.493278 CAATGGAACTAGCTGGGGTTTG 59.507 50.000 0.85 0.00 0.00 2.93
175 176 2.378547 TCAATGGAACTAGCTGGGGTTT 59.621 45.455 0.85 0.00 0.00 3.27
176 177 1.992557 TCAATGGAACTAGCTGGGGTT 59.007 47.619 0.85 1.58 0.00 4.11
177 178 1.561542 CTCAATGGAACTAGCTGGGGT 59.438 52.381 0.85 0.00 0.00 4.95
178 179 1.748591 GCTCAATGGAACTAGCTGGGG 60.749 57.143 0.85 0.00 32.18 4.96
179 180 1.673168 GCTCAATGGAACTAGCTGGG 58.327 55.000 0.85 0.00 32.18 4.45
180 181 1.293924 CGCTCAATGGAACTAGCTGG 58.706 55.000 0.00 0.00 32.73 4.85
181 182 0.654683 GCGCTCAATGGAACTAGCTG 59.345 55.000 0.00 0.00 32.73 4.24
182 183 0.807667 CGCGCTCAATGGAACTAGCT 60.808 55.000 5.56 0.00 32.73 3.32
183 184 1.638467 CGCGCTCAATGGAACTAGC 59.362 57.895 5.56 0.00 0.00 3.42
184 185 1.083806 TGCGCGCTCAATGGAACTAG 61.084 55.000 33.29 0.00 0.00 2.57
185 186 1.079474 TGCGCGCTCAATGGAACTA 60.079 52.632 33.29 3.51 0.00 2.24
186 187 2.358615 TGCGCGCTCAATGGAACT 60.359 55.556 33.29 0.00 0.00 3.01
187 188 2.202349 GTGCGCGCTCAATGGAAC 60.202 61.111 33.29 15.60 0.00 3.62
188 189 3.430862 GGTGCGCGCTCAATGGAA 61.431 61.111 33.29 5.92 0.00 3.53
192 193 2.916502 TAATCCGGTGCGCGCTCAAT 62.917 55.000 33.29 19.02 0.00 2.57
193 194 3.650907 TAATCCGGTGCGCGCTCAA 62.651 57.895 33.29 17.60 0.00 3.02
194 195 4.136511 TAATCCGGTGCGCGCTCA 62.137 61.111 33.29 13.54 0.00 4.26
195 196 2.672908 TAGTAATCCGGTGCGCGCTC 62.673 60.000 33.29 28.51 0.00 5.03
196 197 2.083835 ATAGTAATCCGGTGCGCGCT 62.084 55.000 33.29 12.72 0.00 5.92
197 198 1.219522 AATAGTAATCCGGTGCGCGC 61.220 55.000 27.26 27.26 0.00 6.86
198 199 0.782384 GAATAGTAATCCGGTGCGCG 59.218 55.000 0.00 0.00 0.00 6.86
199 200 2.150397 AGAATAGTAATCCGGTGCGC 57.850 50.000 0.00 0.00 0.00 6.09
200 201 4.500603 AGTAGAATAGTAATCCGGTGCG 57.499 45.455 0.00 0.00 0.00 5.34
210 211 9.584008 AGAAACGGATGGATTAGTAGAATAGTA 57.416 33.333 0.00 0.00 0.00 1.82
211 212 8.480133 AGAAACGGATGGATTAGTAGAATAGT 57.520 34.615 0.00 0.00 0.00 2.12
253 254 9.355215 CGTATGTACTTACTTGTTGAAATCTCT 57.645 33.333 14.83 0.00 0.00 3.10
254 255 8.592998 CCGTATGTACTTACTTGTTGAAATCTC 58.407 37.037 14.83 0.00 0.00 2.75
255 256 8.308931 TCCGTATGTACTTACTTGTTGAAATCT 58.691 33.333 14.83 0.00 0.00 2.40
256 257 8.470040 TCCGTATGTACTTACTTGTTGAAATC 57.530 34.615 14.83 0.00 0.00 2.17
257 258 7.064253 GCTCCGTATGTACTTACTTGTTGAAAT 59.936 37.037 14.83 0.00 0.00 2.17
258 259 6.366877 GCTCCGTATGTACTTACTTGTTGAAA 59.633 38.462 14.83 0.00 0.00 2.69
259 260 5.865552 GCTCCGTATGTACTTACTTGTTGAA 59.134 40.000 14.83 0.00 0.00 2.69
260 261 5.047872 TGCTCCGTATGTACTTACTTGTTGA 60.048 40.000 14.83 5.22 0.00 3.18
261 262 5.165676 TGCTCCGTATGTACTTACTTGTTG 58.834 41.667 14.83 1.94 0.00 3.33
262 263 5.395682 TGCTCCGTATGTACTTACTTGTT 57.604 39.130 14.83 0.00 0.00 2.83
263 264 5.395682 TTGCTCCGTATGTACTTACTTGT 57.604 39.130 14.83 0.00 0.00 3.16
264 265 6.715344 TTTTGCTCCGTATGTACTTACTTG 57.285 37.500 14.83 7.75 0.00 3.16
265 266 9.439500 TTTATTTTGCTCCGTATGTACTTACTT 57.561 29.630 14.83 0.00 0.00 2.24
266 267 9.609346 ATTTATTTTGCTCCGTATGTACTTACT 57.391 29.630 14.83 0.00 0.00 2.24
267 268 9.646336 CATTTATTTTGCTCCGTATGTACTTAC 57.354 33.333 8.51 8.51 0.00 2.34
268 269 9.602568 TCATTTATTTTGCTCCGTATGTACTTA 57.397 29.630 0.00 0.00 0.00 2.24
269 270 8.500753 TCATTTATTTTGCTCCGTATGTACTT 57.499 30.769 0.00 0.00 0.00 2.24
270 271 7.254795 GCTCATTTATTTTGCTCCGTATGTACT 60.255 37.037 0.00 0.00 0.00 2.73
271 272 6.851330 GCTCATTTATTTTGCTCCGTATGTAC 59.149 38.462 0.00 0.00 0.00 2.90
272 273 6.017440 GGCTCATTTATTTTGCTCCGTATGTA 60.017 38.462 0.00 0.00 0.00 2.29
273 274 5.221048 GGCTCATTTATTTTGCTCCGTATGT 60.221 40.000 0.00 0.00 0.00 2.29
274 275 5.009010 AGGCTCATTTATTTTGCTCCGTATG 59.991 40.000 0.00 0.00 0.00 2.39
275 276 5.133221 AGGCTCATTTATTTTGCTCCGTAT 58.867 37.500 0.00 0.00 0.00 3.06
276 277 4.523083 AGGCTCATTTATTTTGCTCCGTA 58.477 39.130 0.00 0.00 0.00 4.02
277 278 3.356290 AGGCTCATTTATTTTGCTCCGT 58.644 40.909 0.00 0.00 0.00 4.69
278 279 5.695851 ATAGGCTCATTTATTTTGCTCCG 57.304 39.130 0.00 0.00 0.00 4.63
279 280 7.751768 AGTATAGGCTCATTTATTTTGCTCC 57.248 36.000 0.00 0.00 0.00 4.70
315 316 9.299465 TGGACTACCACATACGAATGTATATAA 57.701 33.333 0.00 0.00 44.70 0.98
316 317 8.866970 TGGACTACCACATACGAATGTATATA 57.133 34.615 0.00 0.00 44.70 0.86
317 318 7.770366 TGGACTACCACATACGAATGTATAT 57.230 36.000 0.00 0.00 44.70 0.86
336 337 8.630037 ACGTCTTTTTAAGATTTCAAATGGACT 58.370 29.630 0.00 0.00 40.18 3.85
337 338 8.797266 ACGTCTTTTTAAGATTTCAAATGGAC 57.203 30.769 0.00 0.00 40.18 4.02
353 354 8.876790 CCTCCGTTTCTAAATATACGTCTTTTT 58.123 33.333 0.00 0.00 32.45 1.94
354 355 8.253113 TCCTCCGTTTCTAAATATACGTCTTTT 58.747 33.333 0.00 0.00 32.45 2.27
355 356 7.775120 TCCTCCGTTTCTAAATATACGTCTTT 58.225 34.615 0.00 0.00 32.45 2.52
356 357 7.338800 TCCTCCGTTTCTAAATATACGTCTT 57.661 36.000 0.00 0.00 32.45 3.01
357 358 6.949352 TCCTCCGTTTCTAAATATACGTCT 57.051 37.500 0.00 0.00 32.45 4.18
358 359 7.199078 ACTTCCTCCGTTTCTAAATATACGTC 58.801 38.462 0.00 0.00 32.45 4.34
359 360 7.105241 ACTTCCTCCGTTTCTAAATATACGT 57.895 36.000 0.00 0.00 32.45 3.57
360 361 8.348507 AGTACTTCCTCCGTTTCTAAATATACG 58.651 37.037 0.00 0.00 0.00 3.06
364 365 8.854117 GGATAGTACTTCCTCCGTTTCTAAATA 58.146 37.037 0.00 0.00 0.00 1.40
365 366 7.343833 TGGATAGTACTTCCTCCGTTTCTAAAT 59.656 37.037 18.78 0.00 34.17 1.40
366 367 6.664816 TGGATAGTACTTCCTCCGTTTCTAAA 59.335 38.462 18.78 0.00 34.17 1.85
367 368 6.189859 TGGATAGTACTTCCTCCGTTTCTAA 58.810 40.000 18.78 0.00 34.17 2.10
368 369 5.759059 TGGATAGTACTTCCTCCGTTTCTA 58.241 41.667 18.78 0.44 34.17 2.10
369 370 4.607239 TGGATAGTACTTCCTCCGTTTCT 58.393 43.478 18.78 0.00 34.17 2.52
370 371 4.996788 TGGATAGTACTTCCTCCGTTTC 57.003 45.455 18.78 0.00 34.17 2.78
371 372 4.443034 GCATGGATAGTACTTCCTCCGTTT 60.443 45.833 18.78 5.07 34.17 3.60
372 373 3.069729 GCATGGATAGTACTTCCTCCGTT 59.930 47.826 18.78 6.84 34.17 4.44
373 374 2.628657 GCATGGATAGTACTTCCTCCGT 59.371 50.000 18.78 13.45 34.17 4.69
374 375 2.628178 TGCATGGATAGTACTTCCTCCG 59.372 50.000 18.78 11.44 34.17 4.63
375 376 4.573900 CATGCATGGATAGTACTTCCTCC 58.426 47.826 19.40 14.86 34.17 4.30
376 377 3.999663 GCATGCATGGATAGTACTTCCTC 59.000 47.826 27.34 2.26 34.17 3.71
377 378 3.392285 TGCATGCATGGATAGTACTTCCT 59.608 43.478 27.34 7.46 34.17 3.36
378 379 3.743521 TGCATGCATGGATAGTACTTCC 58.256 45.455 27.34 8.80 0.00 3.46
391 392 1.830847 ATCACGGCCATGCATGCAT 60.831 52.632 27.46 27.46 37.08 3.96
392 393 2.440613 ATCACGGCCATGCATGCA 60.441 55.556 25.04 25.04 0.00 3.96
393 394 2.027024 CATCACGGCCATGCATGC 59.973 61.111 21.69 11.82 0.00 4.06
394 395 1.065109 CACATCACGGCCATGCATG 59.935 57.895 20.19 20.19 0.00 4.06
395 396 1.077572 TCACATCACGGCCATGCAT 60.078 52.632 2.24 0.00 0.00 3.96
396 397 2.039974 GTCACATCACGGCCATGCA 61.040 57.895 2.24 0.00 0.00 3.96
397 398 1.709147 GAGTCACATCACGGCCATGC 61.709 60.000 2.24 0.00 0.00 4.06
398 399 1.091771 GGAGTCACATCACGGCCATG 61.092 60.000 2.24 0.00 0.00 3.66
399 400 1.221840 GGAGTCACATCACGGCCAT 59.778 57.895 2.24 0.00 0.00 4.40
400 401 2.662596 GGAGTCACATCACGGCCA 59.337 61.111 2.24 0.00 0.00 5.36
401 402 2.125106 GGGAGTCACATCACGGCC 60.125 66.667 0.00 0.00 0.00 6.13
402 403 0.605319 TTTGGGAGTCACATCACGGC 60.605 55.000 0.00 0.00 0.00 5.68
403 404 1.535462 GTTTTGGGAGTCACATCACGG 59.465 52.381 0.00 0.00 0.00 4.94
404 405 2.217750 TGTTTTGGGAGTCACATCACG 58.782 47.619 0.00 0.00 0.00 4.35
405 406 4.853924 AATGTTTTGGGAGTCACATCAC 57.146 40.909 0.00 0.00 0.00 3.06
406 407 4.892345 TGAAATGTTTTGGGAGTCACATCA 59.108 37.500 0.00 0.00 0.00 3.07
407 408 5.010012 AGTGAAATGTTTTGGGAGTCACATC 59.990 40.000 0.00 0.00 37.07 3.06
408 409 4.895297 AGTGAAATGTTTTGGGAGTCACAT 59.105 37.500 0.00 0.00 37.07 3.21
409 410 4.277476 AGTGAAATGTTTTGGGAGTCACA 58.723 39.130 0.00 0.00 37.07 3.58
410 411 4.338118 TGAGTGAAATGTTTTGGGAGTCAC 59.662 41.667 0.00 0.00 35.30 3.67
411 412 4.338118 GTGAGTGAAATGTTTTGGGAGTCA 59.662 41.667 0.00 0.00 0.00 3.41
412 413 4.580580 AGTGAGTGAAATGTTTTGGGAGTC 59.419 41.667 0.00 0.00 0.00 3.36
413 414 4.536765 AGTGAGTGAAATGTTTTGGGAGT 58.463 39.130 0.00 0.00 0.00 3.85
414 415 5.520376 AAGTGAGTGAAATGTTTTGGGAG 57.480 39.130 0.00 0.00 0.00 4.30
415 416 5.930837 AAAGTGAGTGAAATGTTTTGGGA 57.069 34.783 0.00 0.00 0.00 4.37
416 417 5.691754 GCTAAAGTGAGTGAAATGTTTTGGG 59.308 40.000 0.00 0.00 0.00 4.12
417 418 6.507023 AGCTAAAGTGAGTGAAATGTTTTGG 58.493 36.000 0.00 0.00 0.00 3.28
418 419 6.638468 GGAGCTAAAGTGAGTGAAATGTTTTG 59.362 38.462 0.00 0.00 0.00 2.44
419 420 6.239036 GGGAGCTAAAGTGAGTGAAATGTTTT 60.239 38.462 0.00 0.00 0.00 2.43
420 421 5.241728 GGGAGCTAAAGTGAGTGAAATGTTT 59.758 40.000 0.00 0.00 0.00 2.83
421 422 4.762251 GGGAGCTAAAGTGAGTGAAATGTT 59.238 41.667 0.00 0.00 0.00 2.71
422 423 4.202461 TGGGAGCTAAAGTGAGTGAAATGT 60.202 41.667 0.00 0.00 0.00 2.71
423 424 4.154918 GTGGGAGCTAAAGTGAGTGAAATG 59.845 45.833 0.00 0.00 0.00 2.32
424 425 4.202461 TGTGGGAGCTAAAGTGAGTGAAAT 60.202 41.667 0.00 0.00 0.00 2.17
425 426 3.135712 TGTGGGAGCTAAAGTGAGTGAAA 59.864 43.478 0.00 0.00 0.00 2.69
426 427 2.703536 TGTGGGAGCTAAAGTGAGTGAA 59.296 45.455 0.00 0.00 0.00 3.18
427 428 2.325484 TGTGGGAGCTAAAGTGAGTGA 58.675 47.619 0.00 0.00 0.00 3.41
428 429 2.808543 GTTGTGGGAGCTAAAGTGAGTG 59.191 50.000 0.00 0.00 0.00 3.51
429 430 2.438021 TGTTGTGGGAGCTAAAGTGAGT 59.562 45.455 0.00 0.00 0.00 3.41
430 431 3.070018 CTGTTGTGGGAGCTAAAGTGAG 58.930 50.000 0.00 0.00 0.00 3.51
431 432 2.438021 ACTGTTGTGGGAGCTAAAGTGA 59.562 45.455 0.00 0.00 0.00 3.41
432 433 2.549754 CACTGTTGTGGGAGCTAAAGTG 59.450 50.000 0.00 0.00 40.33 3.16
433 434 2.851195 CACTGTTGTGGGAGCTAAAGT 58.149 47.619 0.00 0.00 40.33 2.66
444 445 1.898574 GGGTCAGGCCACTGTTGTG 60.899 63.158 5.01 0.00 45.14 3.33
445 446 1.932156 TTGGGTCAGGCCACTGTTGT 61.932 55.000 5.01 0.00 45.14 3.32
446 447 1.152777 TTGGGTCAGGCCACTGTTG 60.153 57.895 5.01 0.00 45.14 3.33
447 448 1.151450 CTTGGGTCAGGCCACTGTT 59.849 57.895 5.01 0.00 45.14 3.16
448 449 2.078665 ACTTGGGTCAGGCCACTGT 61.079 57.895 5.01 0.00 45.14 3.55
449 450 1.601759 CACTTGGGTCAGGCCACTG 60.602 63.158 5.01 0.00 46.30 3.66
450 451 2.839098 CACTTGGGTCAGGCCACT 59.161 61.111 5.01 0.00 39.65 4.00
451 452 2.985847 GCACTTGGGTCAGGCCAC 60.986 66.667 5.01 0.00 39.65 5.01
452 453 4.284550 GGCACTTGGGTCAGGCCA 62.285 66.667 5.01 0.00 44.01 5.36
453 454 3.808218 TTGGCACTTGGGTCAGGCC 62.808 63.158 0.00 0.00 44.82 5.19
454 455 1.832167 TTTGGCACTTGGGTCAGGC 60.832 57.895 0.00 0.00 0.00 4.85
455 456 1.463553 GGTTTGGCACTTGGGTCAGG 61.464 60.000 0.00 0.00 0.00 3.86
456 457 1.463553 GGGTTTGGCACTTGGGTCAG 61.464 60.000 0.00 0.00 0.00 3.51
457 458 1.456705 GGGTTTGGCACTTGGGTCA 60.457 57.895 0.00 0.00 0.00 4.02
458 459 2.561037 CGGGTTTGGCACTTGGGTC 61.561 63.158 0.00 0.00 0.00 4.46
459 460 2.520741 CGGGTTTGGCACTTGGGT 60.521 61.111 0.00 0.00 0.00 4.51
460 461 3.302344 CCGGGTTTGGCACTTGGG 61.302 66.667 0.00 0.00 0.00 4.12
461 462 2.131067 AACCGGGTTTGGCACTTGG 61.131 57.895 6.59 0.00 0.00 3.61
462 463 1.067250 CAACCGGGTTTGGCACTTG 59.933 57.895 10.33 0.00 0.00 3.16
463 464 1.076632 TCAACCGGGTTTGGCACTT 60.077 52.632 10.33 0.00 0.00 3.16
464 465 1.826487 GTCAACCGGGTTTGGCACT 60.826 57.895 10.33 0.00 31.03 4.40
465 466 2.725641 GTCAACCGGGTTTGGCAC 59.274 61.111 10.33 1.14 31.03 5.01
466 467 2.519780 GGTCAACCGGGTTTGGCA 60.520 61.111 10.33 0.00 32.38 4.92
467 468 2.519780 TGGTCAACCGGGTTTGGC 60.520 61.111 10.33 3.13 39.43 4.52
468 469 0.753848 AAGTGGTCAACCGGGTTTGG 60.754 55.000 10.33 0.00 39.43 3.28
469 470 1.107945 AAAGTGGTCAACCGGGTTTG 58.892 50.000 10.33 1.67 39.43 2.93
470 471 1.107945 CAAAGTGGTCAACCGGGTTT 58.892 50.000 10.33 0.00 39.43 3.27
471 472 1.388837 GCAAAGTGGTCAACCGGGTT 61.389 55.000 6.59 6.59 39.43 4.11
472 473 1.826487 GCAAAGTGGTCAACCGGGT 60.826 57.895 6.32 0.00 39.43 5.28
473 474 1.795170 CTGCAAAGTGGTCAACCGGG 61.795 60.000 6.32 0.00 39.43 5.73
474 475 0.817634 TCTGCAAAGTGGTCAACCGG 60.818 55.000 0.00 0.00 39.43 5.28
475 476 1.197721 GATCTGCAAAGTGGTCAACCG 59.802 52.381 0.00 0.00 39.43 4.44
476 477 2.229792 TGATCTGCAAAGTGGTCAACC 58.770 47.619 0.00 0.00 0.00 3.77
477 478 3.316308 ACTTGATCTGCAAAGTGGTCAAC 59.684 43.478 0.72 0.00 35.74 3.18
478 479 3.554934 ACTTGATCTGCAAAGTGGTCAA 58.445 40.909 0.72 0.40 35.74 3.18
479 480 3.213206 ACTTGATCTGCAAAGTGGTCA 57.787 42.857 0.72 0.00 35.74 4.02
480 481 3.057946 GGAACTTGATCTGCAAAGTGGTC 60.058 47.826 2.36 0.00 35.74 4.02
481 482 2.887152 GGAACTTGATCTGCAAAGTGGT 59.113 45.455 2.36 0.00 35.74 4.16
482 483 2.095567 CGGAACTTGATCTGCAAAGTGG 60.096 50.000 2.36 0.00 35.74 4.00
483 484 2.807967 TCGGAACTTGATCTGCAAAGTG 59.192 45.455 2.36 0.00 35.74 3.16
484 485 3.126001 TCGGAACTTGATCTGCAAAGT 57.874 42.857 0.00 0.00 35.74 2.66
485 486 4.023707 AGTTTCGGAACTTGATCTGCAAAG 60.024 41.667 2.29 0.00 43.48 2.77
486 487 3.882888 AGTTTCGGAACTTGATCTGCAAA 59.117 39.130 2.29 0.00 43.48 3.68
487 488 3.476552 AGTTTCGGAACTTGATCTGCAA 58.523 40.909 2.29 0.00 43.48 4.08
488 489 3.126001 AGTTTCGGAACTTGATCTGCA 57.874 42.857 2.29 0.00 43.48 4.41
524 525 8.992073 GGATGAATGACAAAATTGTTAAGCTTT 58.008 29.630 3.20 0.00 42.43 3.51
525 526 7.603784 GGGATGAATGACAAAATTGTTAAGCTT 59.396 33.333 3.48 3.48 42.43 3.74
526 527 7.038799 AGGGATGAATGACAAAATTGTTAAGCT 60.039 33.333 0.00 0.00 42.43 3.74
527 528 7.099120 AGGGATGAATGACAAAATTGTTAAGC 58.901 34.615 0.00 0.00 42.43 3.09
538 539 9.308000 ACAAAACTTAATAGGGATGAATGACAA 57.692 29.630 0.00 0.00 0.00 3.18
539 540 8.877864 ACAAAACTTAATAGGGATGAATGACA 57.122 30.769 0.00 0.00 0.00 3.58
540 541 8.956426 TGACAAAACTTAATAGGGATGAATGAC 58.044 33.333 0.00 0.00 0.00 3.06
541 542 9.177608 CTGACAAAACTTAATAGGGATGAATGA 57.822 33.333 0.00 0.00 0.00 2.57
542 543 8.960591 ACTGACAAAACTTAATAGGGATGAATG 58.039 33.333 0.00 0.00 0.00 2.67
543 544 9.533831 AACTGACAAAACTTAATAGGGATGAAT 57.466 29.630 0.00 0.00 0.00 2.57
544 545 8.792633 CAACTGACAAAACTTAATAGGGATGAA 58.207 33.333 0.00 0.00 0.00 2.57
545 546 8.160765 TCAACTGACAAAACTTAATAGGGATGA 58.839 33.333 0.00 0.00 0.00 2.92
546 547 8.335532 TCAACTGACAAAACTTAATAGGGATG 57.664 34.615 0.00 0.00 0.00 3.51
547 548 8.934023 TTCAACTGACAAAACTTAATAGGGAT 57.066 30.769 0.00 0.00 0.00 3.85
548 549 8.754991 TTTCAACTGACAAAACTTAATAGGGA 57.245 30.769 0.00 0.00 0.00 4.20
549 550 8.630037 ACTTTCAACTGACAAAACTTAATAGGG 58.370 33.333 0.00 0.00 0.00 3.53
554 555 9.710979 CGATAACTTTCAACTGACAAAACTTAA 57.289 29.630 0.00 0.00 0.00 1.85
555 556 9.100554 TCGATAACTTTCAACTGACAAAACTTA 57.899 29.630 0.00 0.00 0.00 2.24
556 557 7.981142 TCGATAACTTTCAACTGACAAAACTT 58.019 30.769 0.00 0.00 0.00 2.66
557 558 7.548196 TCGATAACTTTCAACTGACAAAACT 57.452 32.000 0.00 0.00 0.00 2.66
558 559 7.908601 ACTTCGATAACTTTCAACTGACAAAAC 59.091 33.333 0.00 0.00 0.00 2.43
559 560 7.981142 ACTTCGATAACTTTCAACTGACAAAA 58.019 30.769 0.00 0.00 0.00 2.44
560 561 7.548196 ACTTCGATAACTTTCAACTGACAAA 57.452 32.000 0.00 0.00 0.00 2.83
561 562 7.548196 AACTTCGATAACTTTCAACTGACAA 57.452 32.000 0.00 0.00 0.00 3.18
562 563 7.548196 AAACTTCGATAACTTTCAACTGACA 57.452 32.000 0.00 0.00 0.00 3.58
563 564 9.925268 TTTAAACTTCGATAACTTTCAACTGAC 57.075 29.630 0.00 0.00 0.00 3.51
590 591 9.880157 CCCTTTTGAATATGTTCTGATGAATTT 57.120 29.630 3.72 0.00 35.33 1.82
591 592 9.039165 ACCCTTTTGAATATGTTCTGATGAATT 57.961 29.630 3.72 0.00 35.33 2.17
592 593 8.599624 ACCCTTTTGAATATGTTCTGATGAAT 57.400 30.769 3.72 0.00 35.33 2.57
593 594 8.421249 AACCCTTTTGAATATGTTCTGATGAA 57.579 30.769 3.72 0.00 35.33 2.57
594 595 9.527157 TTAACCCTTTTGAATATGTTCTGATGA 57.473 29.630 3.72 0.00 35.33 2.92
607 608 9.278978 GGCAAAAAGATAATTAACCCTTTTGAA 57.721 29.630 21.96 0.00 38.41 2.69
608 609 7.880713 GGGCAAAAAGATAATTAACCCTTTTGA 59.119 33.333 21.96 0.00 38.41 2.69
609 610 7.882791 AGGGCAAAAAGATAATTAACCCTTTTG 59.117 33.333 17.51 17.51 42.56 2.44
626 627 1.398692 GACACCACTGAGGGCAAAAA 58.601 50.000 0.00 0.00 43.89 1.94
728 730 2.584391 GGTTGACCTGGAGACGGCT 61.584 63.158 0.00 0.00 34.42 5.52
904 933 1.305297 TCTCTCGCCATGGTCACCT 60.305 57.895 14.67 0.00 0.00 4.00
986 1048 1.219124 GACATGGAGCTCGAAGCCA 59.781 57.895 7.83 0.00 43.77 4.75
991 1053 1.107114 GAGGAAGACATGGAGCTCGA 58.893 55.000 7.83 3.70 0.00 4.04
1060 1123 0.311165 CGTGGACAGACGAAGACAGT 59.689 55.000 0.00 0.00 42.10 3.55
1166 1229 0.769873 TGGTGCAATTGCCCCAATTT 59.230 45.000 29.36 0.00 45.42 1.82
1489 1555 4.587262 TGCGATTACCATACCTACAGATGT 59.413 41.667 0.00 0.00 0.00 3.06
1493 1559 4.299155 CAGTGCGATTACCATACCTACAG 58.701 47.826 0.00 0.00 0.00 2.74
1541 1607 5.070847 ACAAATTCCTCCATAATTCATGCCC 59.929 40.000 0.00 0.00 32.84 5.36
2081 2208 2.613691 GTCTTTTTGCCATCTGCCATG 58.386 47.619 0.00 0.00 40.16 3.66
2082 2209 1.551883 GGTCTTTTTGCCATCTGCCAT 59.448 47.619 0.00 0.00 40.16 4.40
2097 2224 7.961326 ACAGAATTAATGCCTATTTGGTCTT 57.039 32.000 0.00 0.00 38.35 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.