Multiple sequence alignment - TraesCS2D01G340900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G340900 chr2D 100.000 3061 0 0 1 3061 435195762 435198822 0.000000e+00 5653.0
1 TraesCS2D01G340900 chr2D 81.101 963 101 43 1469 2411 435224442 435225343 0.000000e+00 695.0
2 TraesCS2D01G340900 chr2D 87.520 625 42 21 754 1355 435221575 435222186 0.000000e+00 689.0
3 TraesCS2D01G340900 chr2D 89.701 301 28 2 128 425 618294777 618294477 6.190000e-102 381.0
4 TraesCS2D01G340900 chr2D 84.444 405 34 13 1469 1869 435308381 435308760 3.730000e-99 372.0
5 TraesCS2D01G340900 chr2D 81.418 409 32 18 841 1230 435275331 435275714 8.300000e-76 294.0
6 TraesCS2D01G340900 chr2B 89.907 2358 150 37 768 3058 513680519 513682855 0.000000e+00 2955.0
7 TraesCS2D01G340900 chr2B 83.066 874 92 26 1469 2328 513696341 513697172 0.000000e+00 743.0
8 TraesCS2D01G340900 chr2B 88.676 521 34 10 843 1355 513706317 513706820 2.020000e-171 612.0
9 TraesCS2D01G340900 chr2B 85.235 596 34 23 806 1355 513695041 513695628 5.730000e-157 564.0
10 TraesCS2D01G340900 chr2B 79.957 469 55 21 1872 2328 513708568 513709009 2.960000e-80 309.0
11 TraesCS2D01G340900 chr2B 80.833 240 16 9 430 664 513680298 513680512 8.780000e-36 161.0
12 TraesCS2D01G340900 chr2A 92.602 1514 72 17 1408 2913 551481700 551480219 0.000000e+00 2139.0
13 TraesCS2D01G340900 chr2A 84.237 793 70 29 1575 2328 551372450 551371674 0.000000e+00 721.0
14 TraesCS2D01G340900 chr2A 81.798 923 105 38 1428 2328 551462331 551461450 0.000000e+00 715.0
15 TraesCS2D01G340900 chr2A 86.943 628 34 17 776 1356 551482751 551482125 0.000000e+00 662.0
16 TraesCS2D01G340900 chr2A 90.038 522 27 14 847 1355 551373604 551373095 0.000000e+00 652.0
17 TraesCS2D01G340900 chr2A 87.146 529 45 15 842 1355 551463381 551462861 2.050000e-161 579.0
18 TraesCS2D01G340900 chr2A 83.103 651 77 23 1469 2095 551468214 551467573 2.060000e-156 562.0
19 TraesCS2D01G340900 chr2A 91.233 365 16 6 1004 1355 551451640 551451279 1.650000e-132 483.0
20 TraesCS2D01G340900 chr2A 83.569 566 39 23 841 1355 551469470 551468908 5.940000e-132 481.0
21 TraesCS2D01G340900 chr2A 81.754 570 63 26 1685 2219 551446910 551446347 3.620000e-119 438.0
22 TraesCS2D01G340900 chr2A 93.333 165 11 0 2897 3061 551478165 551478001 8.480000e-61 244.0
23 TraesCS2D01G340900 chr2A 84.286 140 19 3 1469 1607 551450502 551450365 1.910000e-27 134.0
24 TraesCS2D01G340900 chr2A 96.296 54 2 0 847 900 551451796 551451743 4.200000e-14 89.8
25 TraesCS2D01G340900 chr2A 100.000 34 0 0 1372 1405 551481829 551481796 2.550000e-06 63.9
26 TraesCS2D01G340900 chrUn 89.109 303 29 3 127 426 171907635 171907334 1.040000e-99 374.0
27 TraesCS2D01G340900 chrUn 89.109 303 29 3 127 426 287879492 287879191 1.040000e-99 374.0
28 TraesCS2D01G340900 chrUn 88.779 303 31 2 127 426 383416028 383415726 4.820000e-98 368.0
29 TraesCS2D01G340900 chr5B 89.109 303 30 2 127 427 466686970 466687271 1.040000e-99 374.0
30 TraesCS2D01G340900 chr7D 89.037 301 29 3 128 425 141345637 141345338 1.340000e-98 370.0
31 TraesCS2D01G340900 chr6D 89.037 301 30 2 128 425 28476932 28476632 1.340000e-98 370.0
32 TraesCS2D01G340900 chr6D 100.000 46 0 0 708 753 292399063 292399108 5.440000e-13 86.1
33 TraesCS2D01G340900 chr6D 100.000 46 0 0 708 753 462703649 462703694 5.440000e-13 86.1
34 TraesCS2D01G340900 chr4D 88.816 304 30 3 125 425 20141328 20141630 1.340000e-98 370.0
35 TraesCS2D01G340900 chr4D 100.000 46 0 0 708 753 432948941 432948986 5.440000e-13 86.1
36 TraesCS2D01G340900 chr1D 88.816 304 31 2 125 425 47944994 47945297 1.340000e-98 370.0
37 TraesCS2D01G340900 chr6B 97.959 49 1 0 708 756 121782596 121782548 5.440000e-13 86.1
38 TraesCS2D01G340900 chr6B 97.959 49 1 0 708 756 655779543 655779495 5.440000e-13 86.1
39 TraesCS2D01G340900 chr6A 97.959 49 1 0 708 756 430282517 430282469 5.440000e-13 86.1
40 TraesCS2D01G340900 chr6A 100.000 46 0 0 708 753 609560972 609561017 5.440000e-13 86.1
41 TraesCS2D01G340900 chr4A 100.000 46 0 0 708 753 34260947 34260992 5.440000e-13 86.1
42 TraesCS2D01G340900 chr4A 100.000 46 0 0 708 753 34266122 34266167 5.440000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G340900 chr2D 435195762 435198822 3060 False 5653.000 5653 100.00000 1 3061 1 chr2D.!!$F1 3060
1 TraesCS2D01G340900 chr2D 435221575 435225343 3768 False 692.000 695 84.31050 754 2411 2 chr2D.!!$F4 1657
2 TraesCS2D01G340900 chr2B 513680298 513682855 2557 False 1558.000 2955 85.37000 430 3058 2 chr2B.!!$F1 2628
3 TraesCS2D01G340900 chr2B 513695041 513697172 2131 False 653.500 743 84.15050 806 2328 2 chr2B.!!$F2 1522
4 TraesCS2D01G340900 chr2B 513706317 513709009 2692 False 460.500 612 84.31650 843 2328 2 chr2B.!!$F3 1485
5 TraesCS2D01G340900 chr2A 551478001 551482751 4750 True 777.225 2139 93.21950 776 3061 4 chr2A.!!$R5 2285
6 TraesCS2D01G340900 chr2A 551371674 551373604 1930 True 686.500 721 87.13750 847 2328 2 chr2A.!!$R1 1481
7 TraesCS2D01G340900 chr2A 551461450 551463381 1931 True 647.000 715 84.47200 842 2328 2 chr2A.!!$R3 1486
8 TraesCS2D01G340900 chr2A 551467573 551469470 1897 True 521.500 562 83.33600 841 2095 2 chr2A.!!$R4 1254
9 TraesCS2D01G340900 chr2A 551446347 551451796 5449 True 286.200 483 88.39225 847 2219 4 chr2A.!!$R2 1372

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.027194 CTTCCACTGAATGCGCATCG 59.973 55.0 25.53 17.09 0.0 3.84 F
936 943 0.032540 CCAAAGCTTGTCCTGTTGCC 59.967 55.0 0.00 0.00 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 1442 0.392193 GACACCTCATGCCAGGAGTG 60.392 60.0 5.56 6.52 37.48 3.51 R
2911 11829 0.615331 TCGAAAGGAGGCAGAGCATT 59.385 50.0 0.00 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.960237 GGCAACAACGACGATGGA 58.040 55.556 10.02 0.00 0.00 3.41
26 27 2.240230 GGCAACAACGACGATGGAA 58.760 52.632 10.02 0.00 0.00 3.53
27 28 0.589223 GGCAACAACGACGATGGAAA 59.411 50.000 10.02 0.00 0.00 3.13
28 29 1.662026 GGCAACAACGACGATGGAAAC 60.662 52.381 10.02 0.00 0.00 2.78
29 30 1.932160 CAACAACGACGATGGAAACG 58.068 50.000 10.02 0.00 38.45 3.60
30 31 1.523515 CAACAACGACGATGGAAACGA 59.476 47.619 10.02 0.00 34.88 3.85
31 32 1.134226 ACAACGACGATGGAAACGAC 58.866 50.000 10.02 0.00 34.88 4.34
35 36 2.650163 GACGATGGAAACGACGAGG 58.350 57.895 0.00 0.00 34.88 4.63
36 37 0.169672 GACGATGGAAACGACGAGGA 59.830 55.000 0.00 0.00 34.88 3.71
37 38 0.170561 ACGATGGAAACGACGAGGAG 59.829 55.000 0.00 0.00 34.88 3.69
38 39 0.525668 CGATGGAAACGACGAGGAGG 60.526 60.000 0.00 0.00 31.90 4.30
39 40 0.531200 GATGGAAACGACGAGGAGGT 59.469 55.000 0.00 0.00 0.00 3.85
40 41 0.246635 ATGGAAACGACGAGGAGGTG 59.753 55.000 0.00 0.00 0.00 4.00
41 42 1.737008 GGAAACGACGAGGAGGTGC 60.737 63.158 0.00 0.00 0.00 5.01
42 43 1.737008 GAAACGACGAGGAGGTGCC 60.737 63.158 0.00 0.00 0.00 5.01
43 44 3.569049 AAACGACGAGGAGGTGCCG 62.569 63.158 0.00 0.00 43.43 5.69
66 67 3.876198 CAAGGCGGCCATGCGTAC 61.876 66.667 23.09 0.00 35.06 3.67
70 71 4.000557 GCGGCCATGCGTACGATG 62.001 66.667 21.65 18.12 0.00 3.84
71 72 2.584970 CGGCCATGCGTACGATGT 60.585 61.111 21.65 0.00 0.00 3.06
72 73 2.585869 CGGCCATGCGTACGATGTC 61.586 63.158 21.65 9.56 0.00 3.06
73 74 1.520564 GGCCATGCGTACGATGTCA 60.521 57.895 21.65 7.69 0.00 3.58
74 75 1.636340 GCCATGCGTACGATGTCAC 59.364 57.895 21.65 0.00 0.00 3.67
75 76 0.806102 GCCATGCGTACGATGTCACT 60.806 55.000 21.65 0.00 0.00 3.41
76 77 1.535226 GCCATGCGTACGATGTCACTA 60.535 52.381 21.65 0.00 0.00 2.74
77 78 2.862530 GCCATGCGTACGATGTCACTAT 60.863 50.000 21.65 0.00 0.00 2.12
78 79 2.980476 CCATGCGTACGATGTCACTATC 59.020 50.000 21.65 0.00 0.00 2.08
79 80 2.768833 TGCGTACGATGTCACTATCC 57.231 50.000 21.65 0.00 0.00 2.59
80 81 1.003223 TGCGTACGATGTCACTATCCG 60.003 52.381 21.65 0.00 0.00 4.18
81 82 1.671469 CGTACGATGTCACTATCCGC 58.329 55.000 10.44 0.00 0.00 5.54
82 83 1.263484 CGTACGATGTCACTATCCGCT 59.737 52.381 10.44 0.00 0.00 5.52
83 84 2.651701 GTACGATGTCACTATCCGCTG 58.348 52.381 0.00 0.00 0.00 5.18
84 85 0.249073 ACGATGTCACTATCCGCTGC 60.249 55.000 0.00 0.00 0.00 5.25
85 86 0.941463 CGATGTCACTATCCGCTGCC 60.941 60.000 0.00 0.00 0.00 4.85
86 87 0.390860 GATGTCACTATCCGCTGCCT 59.609 55.000 0.00 0.00 0.00 4.75
87 88 0.390860 ATGTCACTATCCGCTGCCTC 59.609 55.000 0.00 0.00 0.00 4.70
88 89 1.299468 GTCACTATCCGCTGCCTCG 60.299 63.158 0.00 0.00 0.00 4.63
89 90 2.659897 CACTATCCGCTGCCTCGC 60.660 66.667 0.00 0.00 0.00 5.03
97 98 4.489249 GCTGCCTCGCGTAGTTTA 57.511 55.556 5.77 0.00 0.00 2.01
98 99 2.288969 GCTGCCTCGCGTAGTTTAG 58.711 57.895 5.77 0.00 0.00 1.85
99 100 0.458025 GCTGCCTCGCGTAGTTTAGT 60.458 55.000 5.77 0.00 0.00 2.24
100 101 1.992170 CTGCCTCGCGTAGTTTAGTT 58.008 50.000 5.77 0.00 0.00 2.24
101 102 2.334838 CTGCCTCGCGTAGTTTAGTTT 58.665 47.619 5.77 0.00 0.00 2.66
102 103 2.735134 CTGCCTCGCGTAGTTTAGTTTT 59.265 45.455 5.77 0.00 0.00 2.43
103 104 3.911868 TGCCTCGCGTAGTTTAGTTTTA 58.088 40.909 5.77 0.00 0.00 1.52
104 105 4.497300 TGCCTCGCGTAGTTTAGTTTTAT 58.503 39.130 5.77 0.00 0.00 1.40
105 106 4.931002 TGCCTCGCGTAGTTTAGTTTTATT 59.069 37.500 5.77 0.00 0.00 1.40
106 107 5.409214 TGCCTCGCGTAGTTTAGTTTTATTT 59.591 36.000 5.77 0.00 0.00 1.40
107 108 6.073112 TGCCTCGCGTAGTTTAGTTTTATTTT 60.073 34.615 5.77 0.00 0.00 1.82
108 109 7.117523 TGCCTCGCGTAGTTTAGTTTTATTTTA 59.882 33.333 5.77 0.00 0.00 1.52
109 110 8.118607 GCCTCGCGTAGTTTAGTTTTATTTTAT 58.881 33.333 5.77 0.00 0.00 1.40
110 111 9.977762 CCTCGCGTAGTTTAGTTTTATTTTATT 57.022 29.630 5.77 0.00 0.00 1.40
139 140 6.216801 AGGTGAACTTGTTTTTCTTAACCC 57.783 37.500 0.00 0.00 0.00 4.11
140 141 5.717654 AGGTGAACTTGTTTTTCTTAACCCA 59.282 36.000 0.00 0.00 0.00 4.51
141 142 6.040247 GGTGAACTTGTTTTTCTTAACCCAG 58.960 40.000 0.00 0.00 0.00 4.45
142 143 6.350696 GGTGAACTTGTTTTTCTTAACCCAGT 60.351 38.462 0.00 0.00 0.00 4.00
143 144 7.148035 GGTGAACTTGTTTTTCTTAACCCAGTA 60.148 37.037 0.00 0.00 0.00 2.74
144 145 7.699391 GTGAACTTGTTTTTCTTAACCCAGTAC 59.301 37.037 0.00 0.00 0.00 2.73
145 146 6.704289 ACTTGTTTTTCTTAACCCAGTACC 57.296 37.500 0.00 0.00 0.00 3.34
146 147 5.297527 ACTTGTTTTTCTTAACCCAGTACCG 59.702 40.000 0.00 0.00 0.00 4.02
147 148 5.033589 TGTTTTTCTTAACCCAGTACCGA 57.966 39.130 0.00 0.00 0.00 4.69
148 149 5.623169 TGTTTTTCTTAACCCAGTACCGAT 58.377 37.500 0.00 0.00 0.00 4.18
149 150 5.470777 TGTTTTTCTTAACCCAGTACCGATG 59.529 40.000 0.00 0.00 0.00 3.84
150 151 2.973694 TCTTAACCCAGTACCGATGC 57.026 50.000 0.00 0.00 0.00 3.91
151 152 2.181125 TCTTAACCCAGTACCGATGCA 58.819 47.619 0.00 0.00 0.00 3.96
152 153 2.568062 TCTTAACCCAGTACCGATGCAA 59.432 45.455 0.00 0.00 0.00 4.08
153 154 3.008157 TCTTAACCCAGTACCGATGCAAA 59.992 43.478 0.00 0.00 0.00 3.68
154 155 1.530323 AACCCAGTACCGATGCAAAC 58.470 50.000 0.00 0.00 0.00 2.93
155 156 0.672401 ACCCAGTACCGATGCAAACG 60.672 55.000 9.21 9.21 0.00 3.60
167 168 4.684008 CGATGCAAACGGTTATATACACG 58.316 43.478 8.45 4.25 0.00 4.49
168 169 4.207635 CGATGCAAACGGTTATATACACGT 59.792 41.667 8.45 5.35 41.88 4.49
169 170 4.843879 TGCAAACGGTTATATACACGTG 57.156 40.909 15.48 15.48 39.76 4.49
170 171 3.062369 TGCAAACGGTTATATACACGTGC 59.938 43.478 17.22 10.85 39.76 5.34
171 172 3.062369 GCAAACGGTTATATACACGTGCA 59.938 43.478 17.22 2.06 39.76 4.57
172 173 4.260456 GCAAACGGTTATATACACGTGCAT 60.260 41.667 17.22 11.52 39.76 3.96
173 174 5.050904 GCAAACGGTTATATACACGTGCATA 60.051 40.000 17.22 13.68 39.76 3.14
174 175 6.349426 CAAACGGTTATATACACGTGCATAC 58.651 40.000 17.22 3.43 39.76 2.39
175 176 5.185668 ACGGTTATATACACGTGCATACA 57.814 39.130 17.22 0.00 38.24 2.29
176 177 4.977963 ACGGTTATATACACGTGCATACAC 59.022 41.667 17.22 12.57 43.76 2.90
177 178 5.217393 CGGTTATATACACGTGCATACACT 58.783 41.667 17.22 0.36 45.10 3.55
178 179 5.341462 CGGTTATATACACGTGCATACACTC 59.659 44.000 17.22 4.78 45.10 3.51
179 180 6.210796 GGTTATATACACGTGCATACACTCA 58.789 40.000 17.22 0.00 45.10 3.41
180 181 6.143438 GGTTATATACACGTGCATACACTCAC 59.857 42.308 17.22 5.90 45.10 3.51
181 182 2.357327 TACACGTGCATACACTCACC 57.643 50.000 17.22 0.00 45.10 4.02
182 183 0.320421 ACACGTGCATACACTCACCC 60.320 55.000 17.22 0.00 45.10 4.61
183 184 1.019278 CACGTGCATACACTCACCCC 61.019 60.000 0.82 0.00 45.10 4.95
184 185 1.192146 ACGTGCATACACTCACCCCT 61.192 55.000 0.00 0.00 45.10 4.79
185 186 0.821517 CGTGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 45.10 3.53
186 187 1.412710 CGTGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 45.10 2.57
187 188 2.803133 CGTGCATACACTCACCCCTATG 60.803 54.545 0.00 0.00 45.10 2.23
188 189 2.434336 GTGCATACACTCACCCCTATGA 59.566 50.000 0.00 0.00 43.85 2.15
189 190 3.111484 TGCATACACTCACCCCTATGAA 58.889 45.455 0.00 0.00 0.00 2.57
190 191 3.118408 TGCATACACTCACCCCTATGAAC 60.118 47.826 0.00 0.00 0.00 3.18
191 192 3.118408 GCATACACTCACCCCTATGAACA 60.118 47.826 0.00 0.00 0.00 3.18
192 193 4.442706 CATACACTCACCCCTATGAACAC 58.557 47.826 0.00 0.00 0.00 3.32
193 194 2.334977 ACACTCACCCCTATGAACACA 58.665 47.619 0.00 0.00 0.00 3.72
194 195 2.038557 ACACTCACCCCTATGAACACAC 59.961 50.000 0.00 0.00 0.00 3.82
195 196 2.038426 CACTCACCCCTATGAACACACA 59.962 50.000 0.00 0.00 0.00 3.72
196 197 2.038557 ACTCACCCCTATGAACACACAC 59.961 50.000 0.00 0.00 0.00 3.82
197 198 1.001520 TCACCCCTATGAACACACACG 59.998 52.381 0.00 0.00 0.00 4.49
198 199 0.321298 ACCCCTATGAACACACACGC 60.321 55.000 0.00 0.00 0.00 5.34
199 200 0.321210 CCCCTATGAACACACACGCA 60.321 55.000 0.00 0.00 0.00 5.24
200 201 0.796312 CCCTATGAACACACACGCAC 59.204 55.000 0.00 0.00 0.00 5.34
201 202 1.507562 CCTATGAACACACACGCACA 58.492 50.000 0.00 0.00 0.00 4.57
202 203 1.194547 CCTATGAACACACACGCACAC 59.805 52.381 0.00 0.00 0.00 3.82
203 204 1.194547 CTATGAACACACACGCACACC 59.805 52.381 0.00 0.00 0.00 4.16
204 205 1.444119 ATGAACACACACGCACACCC 61.444 55.000 0.00 0.00 0.00 4.61
205 206 1.817941 GAACACACACGCACACCCT 60.818 57.895 0.00 0.00 0.00 4.34
206 207 0.531090 GAACACACACGCACACCCTA 60.531 55.000 0.00 0.00 0.00 3.53
207 208 0.812412 AACACACACGCACACCCTAC 60.812 55.000 0.00 0.00 0.00 3.18
208 209 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
209 210 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
210 211 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
211 212 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
212 213 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
213 214 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
214 215 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
215 216 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
216 217 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
217 218 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
218 219 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
219 220 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
220 221 0.341961 ACCCTACCCCTATGAGCACA 59.658 55.000 0.00 0.00 0.00 4.57
221 222 1.061346 ACCCTACCCCTATGAGCACAT 60.061 52.381 1.31 1.31 40.16 3.21
222 223 1.625818 CCCTACCCCTATGAGCACATC 59.374 57.143 0.00 0.00 37.87 3.06
223 224 1.625818 CCTACCCCTATGAGCACATCC 59.374 57.143 0.00 0.00 37.87 3.51
224 225 1.273606 CTACCCCTATGAGCACATCCG 59.726 57.143 0.00 0.00 37.87 4.18
225 226 0.398522 ACCCCTATGAGCACATCCGA 60.399 55.000 0.00 0.00 37.87 4.55
226 227 0.758734 CCCCTATGAGCACATCCGAA 59.241 55.000 0.00 0.00 37.87 4.30
227 228 1.140852 CCCCTATGAGCACATCCGAAA 59.859 52.381 0.00 0.00 37.87 3.46
228 229 2.487934 CCCTATGAGCACATCCGAAAG 58.512 52.381 0.00 0.00 37.87 2.62
229 230 2.103094 CCCTATGAGCACATCCGAAAGA 59.897 50.000 0.00 0.00 37.87 2.52
230 231 3.126831 CCTATGAGCACATCCGAAAGAC 58.873 50.000 0.00 0.00 37.87 3.01
231 232 3.181471 CCTATGAGCACATCCGAAAGACT 60.181 47.826 0.00 0.00 37.87 3.24
232 233 2.084610 TGAGCACATCCGAAAGACTG 57.915 50.000 0.00 0.00 0.00 3.51
233 234 1.618343 TGAGCACATCCGAAAGACTGA 59.382 47.619 0.00 0.00 0.00 3.41
234 235 2.266554 GAGCACATCCGAAAGACTGAG 58.733 52.381 0.00 0.00 0.00 3.35
235 236 0.723981 GCACATCCGAAAGACTGAGC 59.276 55.000 0.00 0.00 0.00 4.26
236 237 1.363744 CACATCCGAAAGACTGAGCC 58.636 55.000 0.00 0.00 0.00 4.70
237 238 0.108615 ACATCCGAAAGACTGAGCCG 60.109 55.000 0.00 0.00 0.00 5.52
238 239 0.173481 CATCCGAAAGACTGAGCCGA 59.827 55.000 0.00 0.00 0.00 5.54
239 240 0.173708 ATCCGAAAGACTGAGCCGAC 59.826 55.000 0.00 0.00 0.00 4.79
240 241 1.176619 TCCGAAAGACTGAGCCGACA 61.177 55.000 0.00 0.00 0.00 4.35
241 242 0.108615 CCGAAAGACTGAGCCGACAT 60.109 55.000 0.00 0.00 0.00 3.06
242 243 1.134367 CCGAAAGACTGAGCCGACATA 59.866 52.381 0.00 0.00 0.00 2.29
243 244 2.223829 CCGAAAGACTGAGCCGACATAT 60.224 50.000 0.00 0.00 0.00 1.78
244 245 3.046390 CGAAAGACTGAGCCGACATATC 58.954 50.000 0.00 0.00 0.00 1.63
245 246 3.489229 CGAAAGACTGAGCCGACATATCA 60.489 47.826 0.00 0.00 0.00 2.15
246 247 4.626042 GAAAGACTGAGCCGACATATCAT 58.374 43.478 0.00 0.00 0.00 2.45
247 248 4.679373 AAGACTGAGCCGACATATCATT 57.321 40.909 0.00 0.00 0.00 2.57
248 249 4.679373 AGACTGAGCCGACATATCATTT 57.321 40.909 0.00 0.00 0.00 2.32
249 250 5.028549 AGACTGAGCCGACATATCATTTT 57.971 39.130 0.00 0.00 0.00 1.82
250 251 4.813161 AGACTGAGCCGACATATCATTTTG 59.187 41.667 0.00 0.00 0.00 2.44
251 252 4.769688 ACTGAGCCGACATATCATTTTGA 58.230 39.130 0.00 0.00 0.00 2.69
252 253 5.185454 ACTGAGCCGACATATCATTTTGAA 58.815 37.500 0.00 0.00 0.00 2.69
253 254 5.647658 ACTGAGCCGACATATCATTTTGAAA 59.352 36.000 0.00 0.00 0.00 2.69
254 255 6.319658 ACTGAGCCGACATATCATTTTGAAAT 59.680 34.615 0.00 0.00 0.00 2.17
255 256 7.099266 TGAGCCGACATATCATTTTGAAATT 57.901 32.000 0.00 0.00 0.00 1.82
256 257 7.546358 TGAGCCGACATATCATTTTGAAATTT 58.454 30.769 0.00 0.00 0.00 1.82
257 258 8.681806 TGAGCCGACATATCATTTTGAAATTTA 58.318 29.630 0.00 0.00 0.00 1.40
258 259 8.856490 AGCCGACATATCATTTTGAAATTTAC 57.144 30.769 0.00 0.00 0.00 2.01
259 260 7.643764 AGCCGACATATCATTTTGAAATTTACG 59.356 33.333 0.00 0.00 0.00 3.18
260 261 7.642194 GCCGACATATCATTTTGAAATTTACGA 59.358 33.333 0.00 0.00 0.00 3.43
261 262 9.497030 CCGACATATCATTTTGAAATTTACGAA 57.503 29.630 0.00 0.00 0.00 3.85
276 277 2.959275 CGAAGTCATCGTAGGCACC 58.041 57.895 0.00 0.00 46.52 5.01
277 278 0.456221 CGAAGTCATCGTAGGCACCT 59.544 55.000 0.00 0.00 46.52 4.00
278 279 1.534175 CGAAGTCATCGTAGGCACCTC 60.534 57.143 0.00 0.00 46.52 3.85
279 280 0.456221 AAGTCATCGTAGGCACCTCG 59.544 55.000 0.00 0.00 0.00 4.63
280 281 0.680280 AGTCATCGTAGGCACCTCGT 60.680 55.000 0.00 0.00 0.00 4.18
281 282 0.248539 GTCATCGTAGGCACCTCGTC 60.249 60.000 0.00 0.00 0.00 4.20
282 283 0.678684 TCATCGTAGGCACCTCGTCA 60.679 55.000 0.00 0.00 0.00 4.35
283 284 0.385751 CATCGTAGGCACCTCGTCAT 59.614 55.000 0.00 0.00 0.00 3.06
284 285 0.669077 ATCGTAGGCACCTCGTCATC 59.331 55.000 0.00 0.00 0.00 2.92
285 286 1.298413 CGTAGGCACCTCGTCATCG 60.298 63.158 0.00 0.00 38.55 3.84
286 287 1.712018 CGTAGGCACCTCGTCATCGA 61.712 60.000 0.00 0.00 44.12 3.59
287 288 0.248539 GTAGGCACCTCGTCATCGAC 60.249 60.000 0.00 0.00 41.35 4.20
288 289 0.678684 TAGGCACCTCGTCATCGACA 60.679 55.000 0.00 0.00 41.35 4.35
289 290 1.141881 GGCACCTCGTCATCGACAT 59.858 57.895 0.00 0.00 41.35 3.06
290 291 1.148157 GGCACCTCGTCATCGACATG 61.148 60.000 0.00 0.00 41.35 3.21
291 292 0.179137 GCACCTCGTCATCGACATGA 60.179 55.000 0.00 0.00 41.35 3.07
292 293 1.735700 GCACCTCGTCATCGACATGAA 60.736 52.381 0.00 0.00 40.90 2.57
293 294 1.920574 CACCTCGTCATCGACATGAAC 59.079 52.381 0.00 0.00 40.90 3.18
294 295 1.191944 CCTCGTCATCGACATGAACG 58.808 55.000 0.00 5.16 40.90 3.95
295 296 1.467543 CCTCGTCATCGACATGAACGT 60.468 52.381 0.00 0.00 40.90 3.99
296 297 1.840741 CTCGTCATCGACATGAACGTC 59.159 52.381 0.00 0.00 40.90 4.34
297 298 1.467342 TCGTCATCGACATGAACGTCT 59.533 47.619 0.00 0.00 40.90 4.18
298 299 1.840741 CGTCATCGACATGAACGTCTC 59.159 52.381 0.00 0.00 40.90 3.36
299 300 2.186076 GTCATCGACATGAACGTCTCC 58.814 52.381 0.00 0.00 40.90 3.71
300 301 2.092323 TCATCGACATGAACGTCTCCT 58.908 47.619 0.00 0.00 35.99 3.69
301 302 2.492088 TCATCGACATGAACGTCTCCTT 59.508 45.455 0.00 0.00 35.99 3.36
302 303 2.631418 TCGACATGAACGTCTCCTTC 57.369 50.000 0.00 0.00 33.54 3.46
303 304 1.201647 TCGACATGAACGTCTCCTTCC 59.798 52.381 0.00 0.00 33.54 3.46
304 305 1.067846 CGACATGAACGTCTCCTTCCA 60.068 52.381 0.00 0.00 33.54 3.53
305 306 2.338500 GACATGAACGTCTCCTTCCAC 58.662 52.381 0.00 0.00 32.92 4.02
306 307 1.971357 ACATGAACGTCTCCTTCCACT 59.029 47.619 0.00 0.00 0.00 4.00
307 308 2.289072 ACATGAACGTCTCCTTCCACTG 60.289 50.000 0.00 0.00 0.00 3.66
308 309 1.699730 TGAACGTCTCCTTCCACTGA 58.300 50.000 0.00 0.00 0.00 3.41
309 310 2.036387 TGAACGTCTCCTTCCACTGAA 58.964 47.619 0.00 0.00 0.00 3.02
310 311 2.632996 TGAACGTCTCCTTCCACTGAAT 59.367 45.455 0.00 0.00 0.00 2.57
311 312 2.751166 ACGTCTCCTTCCACTGAATG 57.249 50.000 0.00 0.00 0.00 2.67
312 313 1.338200 ACGTCTCCTTCCACTGAATGC 60.338 52.381 0.00 0.00 0.00 3.56
313 314 1.363744 GTCTCCTTCCACTGAATGCG 58.636 55.000 0.00 0.00 0.00 4.73
314 315 0.391661 TCTCCTTCCACTGAATGCGC 60.392 55.000 0.00 0.00 0.00 6.09
315 316 0.674581 CTCCTTCCACTGAATGCGCA 60.675 55.000 14.96 14.96 0.00 6.09
316 317 0.035152 TCCTTCCACTGAATGCGCAT 60.035 50.000 19.28 19.28 0.00 4.73
317 318 0.379669 CCTTCCACTGAATGCGCATC 59.620 55.000 25.53 17.12 0.00 3.91
318 319 0.027194 CTTCCACTGAATGCGCATCG 59.973 55.000 25.53 17.09 0.00 3.84
329 330 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
330 331 1.300620 CGCATCGCCGGAAATCCTA 60.301 57.895 5.05 0.00 0.00 2.94
331 332 0.878523 CGCATCGCCGGAAATCCTAA 60.879 55.000 5.05 0.00 0.00 2.69
332 333 1.305201 GCATCGCCGGAAATCCTAAA 58.695 50.000 5.05 0.00 0.00 1.85
333 334 1.673920 GCATCGCCGGAAATCCTAAAA 59.326 47.619 5.05 0.00 0.00 1.52
334 335 2.293399 GCATCGCCGGAAATCCTAAAAT 59.707 45.455 5.05 0.00 0.00 1.82
335 336 3.500680 GCATCGCCGGAAATCCTAAAATA 59.499 43.478 5.05 0.00 0.00 1.40
336 337 4.023536 GCATCGCCGGAAATCCTAAAATAA 60.024 41.667 5.05 0.00 0.00 1.40
337 338 5.506649 GCATCGCCGGAAATCCTAAAATAAA 60.507 40.000 5.05 0.00 0.00 1.40
338 339 6.677913 CATCGCCGGAAATCCTAAAATAAAT 58.322 36.000 5.05 0.00 0.00 1.40
339 340 6.702716 TCGCCGGAAATCCTAAAATAAATT 57.297 33.333 5.05 0.00 0.00 1.82
340 341 7.102847 TCGCCGGAAATCCTAAAATAAATTT 57.897 32.000 5.05 0.00 34.92 1.82
341 342 8.223177 TCGCCGGAAATCCTAAAATAAATTTA 57.777 30.769 5.05 0.00 32.27 1.40
342 343 8.347035 TCGCCGGAAATCCTAAAATAAATTTAG 58.653 33.333 5.05 1.83 46.72 1.85
365 366 9.515226 TTAGGAATAAATACAAGCACAAAGACT 57.485 29.630 0.00 0.00 0.00 3.24
366 367 8.409358 AGGAATAAATACAAGCACAAAGACTT 57.591 30.769 0.00 0.00 0.00 3.01
367 368 8.299570 AGGAATAAATACAAGCACAAAGACTTG 58.700 33.333 0.00 0.00 46.91 3.16
368 369 8.296713 GGAATAAATACAAGCACAAAGACTTGA 58.703 33.333 9.54 0.00 44.89 3.02
369 370 9.677567 GAATAAATACAAGCACAAAGACTTGAA 57.322 29.630 9.54 0.00 44.89 2.69
370 371 9.463443 AATAAATACAAGCACAAAGACTTGAAC 57.537 29.630 9.54 0.00 44.89 3.18
371 372 3.782889 ACAAGCACAAAGACTTGAACC 57.217 42.857 9.54 0.00 44.89 3.62
372 373 2.427095 ACAAGCACAAAGACTTGAACCC 59.573 45.455 9.54 0.00 44.89 4.11
373 374 2.689983 CAAGCACAAAGACTTGAACCCT 59.310 45.455 0.00 0.00 44.89 4.34
374 375 2.301346 AGCACAAAGACTTGAACCCTG 58.699 47.619 0.00 0.00 36.33 4.45
375 376 1.338020 GCACAAAGACTTGAACCCTGG 59.662 52.381 0.00 0.00 36.33 4.45
376 377 2.654863 CACAAAGACTTGAACCCTGGT 58.345 47.619 0.00 0.00 36.33 4.00
377 378 2.358898 CACAAAGACTTGAACCCTGGTG 59.641 50.000 0.00 0.00 36.33 4.17
378 379 1.956477 CAAAGACTTGAACCCTGGTGG 59.044 52.381 0.00 0.00 35.76 4.61
379 380 3.336684 CAAAGACTTGAACCCTGGTGGG 61.337 54.545 0.00 0.00 46.30 4.61
388 389 4.986467 CCTGGTGGGCTGGAATAC 57.014 61.111 0.00 0.00 0.00 1.89
389 390 1.227383 CCTGGTGGGCTGGAATACC 59.773 63.158 0.00 0.00 0.00 2.73
390 391 1.570857 CCTGGTGGGCTGGAATACCA 61.571 60.000 0.00 0.00 44.76 3.25
395 396 2.435372 TGGGCTGGAATACCACAATC 57.565 50.000 0.00 0.00 41.77 2.67
396 397 1.064017 TGGGCTGGAATACCACAATCC 60.064 52.381 0.00 0.00 41.77 3.01
397 398 1.692411 GGCTGGAATACCACAATCCC 58.308 55.000 0.00 0.00 41.77 3.85
398 399 1.215423 GGCTGGAATACCACAATCCCT 59.785 52.381 0.00 0.00 41.77 4.20
399 400 2.576615 GCTGGAATACCACAATCCCTC 58.423 52.381 0.00 0.00 41.77 4.30
400 401 2.173569 GCTGGAATACCACAATCCCTCT 59.826 50.000 0.00 0.00 41.77 3.69
401 402 3.391296 GCTGGAATACCACAATCCCTCTA 59.609 47.826 0.00 0.00 41.77 2.43
402 403 4.141482 GCTGGAATACCACAATCCCTCTAA 60.141 45.833 0.00 0.00 41.77 2.10
403 404 5.367945 TGGAATACCACAATCCCTCTAAC 57.632 43.478 0.00 0.00 41.77 2.34
404 405 4.165372 TGGAATACCACAATCCCTCTAACC 59.835 45.833 0.00 0.00 41.77 2.85
405 406 4.165372 GGAATACCACAATCCCTCTAACCA 59.835 45.833 0.00 0.00 35.97 3.67
406 407 5.163088 GGAATACCACAATCCCTCTAACCAT 60.163 44.000 0.00 0.00 35.97 3.55
407 408 3.933861 ACCACAATCCCTCTAACCATC 57.066 47.619 0.00 0.00 0.00 3.51
408 409 2.509964 ACCACAATCCCTCTAACCATCC 59.490 50.000 0.00 0.00 0.00 3.51
409 410 2.509548 CCACAATCCCTCTAACCATCCA 59.490 50.000 0.00 0.00 0.00 3.41
410 411 3.053693 CCACAATCCCTCTAACCATCCAA 60.054 47.826 0.00 0.00 0.00 3.53
411 412 3.947834 CACAATCCCTCTAACCATCCAAC 59.052 47.826 0.00 0.00 0.00 3.77
412 413 3.053619 ACAATCCCTCTAACCATCCAACC 60.054 47.826 0.00 0.00 0.00 3.77
413 414 2.352561 TCCCTCTAACCATCCAACCA 57.647 50.000 0.00 0.00 0.00 3.67
414 415 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
415 416 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
416 417 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
417 418 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
418 419 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
420 421 3.911260 TCTAACCATCCAACCACAGGTTA 59.089 43.478 0.40 0.00 45.01 2.85
421 422 2.879103 ACCATCCAACCACAGGTTAG 57.121 50.000 0.40 0.00 45.01 2.34
422 423 2.062636 ACCATCCAACCACAGGTTAGT 58.937 47.619 0.40 0.00 45.01 2.24
423 424 2.445525 ACCATCCAACCACAGGTTAGTT 59.554 45.455 0.40 0.00 45.01 2.24
424 425 3.081804 CCATCCAACCACAGGTTAGTTC 58.918 50.000 0.40 0.00 45.01 3.01
425 426 3.497763 CCATCCAACCACAGGTTAGTTCA 60.498 47.826 0.40 0.00 45.01 3.18
426 427 3.485463 TCCAACCACAGGTTAGTTCAG 57.515 47.619 0.40 0.00 45.01 3.02
427 428 2.775384 TCCAACCACAGGTTAGTTCAGT 59.225 45.455 0.40 0.00 45.01 3.41
428 429 3.201266 TCCAACCACAGGTTAGTTCAGTT 59.799 43.478 0.40 0.00 45.01 3.16
429 430 3.315191 CCAACCACAGGTTAGTTCAGTTG 59.685 47.826 0.40 0.00 45.01 3.16
430 431 4.196193 CAACCACAGGTTAGTTCAGTTGA 58.804 43.478 0.40 0.00 45.01 3.18
431 432 4.497291 ACCACAGGTTAGTTCAGTTGAA 57.503 40.909 0.00 0.00 27.29 2.69
432 433 4.196971 ACCACAGGTTAGTTCAGTTGAAC 58.803 43.478 15.41 15.41 43.29 3.18
448 449 5.004440 CAGTTGAACTGTTACATATCGTCCG 59.996 44.000 16.84 0.00 41.19 4.79
455 457 4.818642 TGTTACATATCGTCCGGTTTGAA 58.181 39.130 0.00 0.00 0.00 2.69
459 461 5.013568 ACATATCGTCCGGTTTGAATGTA 57.986 39.130 0.00 0.00 0.00 2.29
473 475 4.678509 TGAATGTAATGCGTGGAACTTC 57.321 40.909 0.00 0.00 31.75 3.01
484 486 4.156182 GCGTGGAACTTCCTTAAAATTCG 58.844 43.478 9.31 3.25 37.46 3.34
494 496 4.136051 TCCTTAAAATTCGTCCGGTTTGT 58.864 39.130 0.00 0.00 0.00 2.83
509 511 3.723764 CGGTTTGTTGTGTTCGATTTGAG 59.276 43.478 0.00 0.00 0.00 3.02
510 512 4.668289 GGTTTGTTGTGTTCGATTTGAGT 58.332 39.130 0.00 0.00 0.00 3.41
511 513 5.502706 CGGTTTGTTGTGTTCGATTTGAGTA 60.503 40.000 0.00 0.00 0.00 2.59
512 514 6.435428 GGTTTGTTGTGTTCGATTTGAGTAT 58.565 36.000 0.00 0.00 0.00 2.12
513 515 6.577427 GGTTTGTTGTGTTCGATTTGAGTATC 59.423 38.462 0.00 0.00 0.00 2.24
514 516 7.352739 GTTTGTTGTGTTCGATTTGAGTATCT 58.647 34.615 0.00 0.00 34.92 1.98
515 517 6.466308 TGTTGTGTTCGATTTGAGTATCTG 57.534 37.500 0.00 0.00 34.92 2.90
516 518 5.107104 TGTTGTGTTCGATTTGAGTATCTGC 60.107 40.000 0.00 0.00 34.92 4.26
517 519 3.612423 TGTGTTCGATTTGAGTATCTGCG 59.388 43.478 0.00 0.00 34.92 5.18
518 520 3.612860 GTGTTCGATTTGAGTATCTGCGT 59.387 43.478 0.00 0.00 34.92 5.24
519 521 4.091509 GTGTTCGATTTGAGTATCTGCGTT 59.908 41.667 0.00 0.00 34.92 4.84
520 522 4.091365 TGTTCGATTTGAGTATCTGCGTTG 59.909 41.667 0.00 0.00 34.92 4.10
521 523 3.186909 TCGATTTGAGTATCTGCGTTGG 58.813 45.455 0.00 0.00 34.92 3.77
522 524 3.119280 TCGATTTGAGTATCTGCGTTGGA 60.119 43.478 0.00 0.00 34.92 3.53
523 525 3.243877 CGATTTGAGTATCTGCGTTGGAG 59.756 47.826 0.00 0.00 34.92 3.86
524 526 3.678056 TTTGAGTATCTGCGTTGGAGT 57.322 42.857 0.00 0.00 34.92 3.85
525 527 3.678056 TTGAGTATCTGCGTTGGAGTT 57.322 42.857 0.00 0.00 34.92 3.01
526 528 3.678056 TGAGTATCTGCGTTGGAGTTT 57.322 42.857 0.00 0.00 34.92 2.66
527 529 4.002906 TGAGTATCTGCGTTGGAGTTTT 57.997 40.909 0.00 0.00 34.92 2.43
528 530 4.385825 TGAGTATCTGCGTTGGAGTTTTT 58.614 39.130 0.00 0.00 34.92 1.94
556 558 3.012518 CTGCATTGGAGTTGTCCTAAGG 58.987 50.000 0.00 0.00 44.30 2.69
557 559 2.642311 TGCATTGGAGTTGTCCTAAGGA 59.358 45.455 0.00 0.00 44.30 3.36
558 560 3.073798 TGCATTGGAGTTGTCCTAAGGAA 59.926 43.478 0.00 0.00 44.30 3.36
564 566 4.065789 GGAGTTGTCCTAAGGAAACACTG 58.934 47.826 0.00 0.00 40.17 3.66
566 568 5.365619 GAGTTGTCCTAAGGAAACACTGAA 58.634 41.667 0.00 0.00 31.38 3.02
574 576 4.942761 AAGGAAACACTGAAATGTGCAT 57.057 36.364 0.00 0.00 41.30 3.96
576 578 5.633830 AGGAAACACTGAAATGTGCATAG 57.366 39.130 0.00 0.00 41.30 2.23
578 580 5.182001 AGGAAACACTGAAATGTGCATAGAC 59.818 40.000 0.00 0.00 41.30 2.59
579 581 5.048782 GGAAACACTGAAATGTGCATAGACA 60.049 40.000 0.00 0.00 41.30 3.41
580 582 5.618056 AACACTGAAATGTGCATAGACAG 57.382 39.130 10.83 10.83 41.30 3.51
591 593 7.686438 ATGTGCATAGACAGTTGACAAATTA 57.314 32.000 0.00 0.00 0.00 1.40
639 644 4.989168 GTCTGAAACGACAGTGGAGTTAAT 59.011 41.667 6.02 0.00 38.79 1.40
648 653 0.035820 GTGGAGTTAATGCGGGTCCA 60.036 55.000 0.00 0.00 34.86 4.02
664 669 2.167219 CCATGTGTCAGCGCCGTAG 61.167 63.158 2.29 0.00 0.00 3.51
667 672 2.432628 GTGTCAGCGCCGTAGCTT 60.433 61.111 2.29 0.00 46.80 3.74
668 673 2.126071 TGTCAGCGCCGTAGCTTC 60.126 61.111 2.29 0.00 46.80 3.86
669 674 2.126071 GTCAGCGCCGTAGCTTCA 60.126 61.111 2.29 0.00 46.80 3.02
670 675 2.126071 TCAGCGCCGTAGCTTCAC 60.126 61.111 2.29 0.00 46.80 3.18
671 676 3.545481 CAGCGCCGTAGCTTCACG 61.545 66.667 2.29 1.93 46.80 4.35
684 689 1.833860 CTTCACGGAAGCTCTCGATC 58.166 55.000 14.29 0.00 32.78 3.69
685 690 0.098905 TTCACGGAAGCTCTCGATCG 59.901 55.000 9.36 9.36 0.00 3.69
686 691 1.298713 CACGGAAGCTCTCGATCGG 60.299 63.158 16.41 6.26 0.00 4.18
687 692 1.451567 ACGGAAGCTCTCGATCGGA 60.452 57.895 16.41 10.48 0.00 4.55
688 693 1.009449 CGGAAGCTCTCGATCGGAC 60.009 63.158 16.41 2.38 0.00 4.79
689 694 1.360911 GGAAGCTCTCGATCGGACC 59.639 63.158 16.41 5.40 0.00 4.46
690 695 1.384989 GGAAGCTCTCGATCGGACCA 61.385 60.000 16.41 0.00 0.00 4.02
691 696 0.456221 GAAGCTCTCGATCGGACCAA 59.544 55.000 16.41 0.00 0.00 3.67
692 697 0.895530 AAGCTCTCGATCGGACCAAA 59.104 50.000 16.41 0.00 0.00 3.28
693 698 1.115467 AGCTCTCGATCGGACCAAAT 58.885 50.000 16.41 0.00 0.00 2.32
694 699 2.307768 AGCTCTCGATCGGACCAAATA 58.692 47.619 16.41 0.00 0.00 1.40
695 700 2.894126 AGCTCTCGATCGGACCAAATAT 59.106 45.455 16.41 0.00 0.00 1.28
696 701 4.079970 AGCTCTCGATCGGACCAAATATA 58.920 43.478 16.41 0.00 0.00 0.86
697 702 4.523173 AGCTCTCGATCGGACCAAATATAA 59.477 41.667 16.41 0.00 0.00 0.98
698 703 4.859798 GCTCTCGATCGGACCAAATATAAG 59.140 45.833 16.41 0.25 0.00 1.73
699 704 5.335740 GCTCTCGATCGGACCAAATATAAGA 60.336 44.000 16.41 4.98 0.00 2.10
700 705 6.626181 GCTCTCGATCGGACCAAATATAAGAT 60.626 42.308 16.41 0.00 0.00 2.40
701 706 7.228314 TCTCGATCGGACCAAATATAAGATT 57.772 36.000 16.41 0.00 0.00 2.40
702 707 7.667557 TCTCGATCGGACCAAATATAAGATTT 58.332 34.615 16.41 0.00 0.00 2.17
703 708 7.598869 TCTCGATCGGACCAAATATAAGATTTG 59.401 37.037 16.41 3.08 38.39 2.32
704 709 7.214381 TCGATCGGACCAAATATAAGATTTGT 58.786 34.615 16.41 0.00 37.32 2.83
705 710 7.170828 TCGATCGGACCAAATATAAGATTTGTG 59.829 37.037 16.41 3.68 37.32 3.33
706 711 7.042051 CGATCGGACCAAATATAAGATTTGTGT 60.042 37.037 7.38 6.17 37.32 3.72
707 712 7.931578 TCGGACCAAATATAAGATTTGTGTT 57.068 32.000 8.26 0.00 37.32 3.32
708 713 8.343168 TCGGACCAAATATAAGATTTGTGTTT 57.657 30.769 8.26 0.00 37.32 2.83
709 714 9.451002 TCGGACCAAATATAAGATTTGTGTTTA 57.549 29.630 8.26 0.00 37.32 2.01
710 715 9.498307 CGGACCAAATATAAGATTTGTGTTTAC 57.502 33.333 8.26 0.00 37.32 2.01
718 723 9.959721 ATATAAGATTTGTGTTTACAGACCTGT 57.040 29.630 7.86 7.86 46.87 4.00
730 735 2.234908 ACAGACCTGTAATGACTCCTGC 59.765 50.000 0.03 0.00 42.90 4.85
731 736 1.478510 AGACCTGTAATGACTCCTGCG 59.521 52.381 0.00 0.00 0.00 5.18
732 737 0.537188 ACCTGTAATGACTCCTGCGG 59.463 55.000 0.00 0.00 0.00 5.69
733 738 0.824109 CCTGTAATGACTCCTGCGGA 59.176 55.000 0.00 0.00 0.00 5.54
734 739 1.207089 CCTGTAATGACTCCTGCGGAA 59.793 52.381 0.00 0.00 0.00 4.30
735 740 2.354704 CCTGTAATGACTCCTGCGGAAA 60.355 50.000 0.00 0.00 0.00 3.13
736 741 3.535561 CTGTAATGACTCCTGCGGAAAT 58.464 45.455 0.00 0.00 0.00 2.17
737 742 3.270027 TGTAATGACTCCTGCGGAAATG 58.730 45.455 0.00 0.00 0.00 2.32
738 743 2.787473 AATGACTCCTGCGGAAATGA 57.213 45.000 0.00 0.00 0.00 2.57
739 744 3.287867 AATGACTCCTGCGGAAATGAT 57.712 42.857 0.00 0.00 0.00 2.45
740 745 2.315925 TGACTCCTGCGGAAATGATC 57.684 50.000 0.00 0.00 0.00 2.92
741 746 1.212616 GACTCCTGCGGAAATGATCG 58.787 55.000 0.00 0.00 0.00 3.69
749 754 1.298602 CGGAAATGATCGCATGGTCA 58.701 50.000 0.00 0.00 34.26 4.02
750 755 1.670295 CGGAAATGATCGCATGGTCAA 59.330 47.619 0.00 0.00 34.26 3.18
751 756 2.097304 CGGAAATGATCGCATGGTCAAA 59.903 45.455 0.00 0.00 34.26 2.69
752 757 3.699067 GGAAATGATCGCATGGTCAAAG 58.301 45.455 0.00 0.00 34.26 2.77
800 806 0.832135 TGTCCTCTGTCGGGAAGCTT 60.832 55.000 0.00 0.00 34.35 3.74
891 898 0.321653 GCAGTGTCCCCTTCGTTGAT 60.322 55.000 0.00 0.00 0.00 2.57
936 943 0.032540 CCAAAGCTTGTCCTGTTGCC 59.967 55.000 0.00 0.00 0.00 4.52
937 944 0.746063 CAAAGCTTGTCCTGTTGCCA 59.254 50.000 0.00 0.00 0.00 4.92
968 1007 1.407258 GCTAGCTCGCCTCCTATATGG 59.593 57.143 7.70 0.00 37.10 2.74
969 1008 1.407258 CTAGCTCGCCTCCTATATGGC 59.593 57.143 0.00 0.00 45.25 4.40
970 1009 0.252012 AGCTCGCCTCCTATATGGCT 60.252 55.000 0.00 0.00 46.42 4.75
971 1010 1.006043 AGCTCGCCTCCTATATGGCTA 59.994 52.381 0.00 0.00 46.42 3.93
972 1011 2.035632 GCTCGCCTCCTATATGGCTAT 58.964 52.381 0.00 0.00 46.42 2.97
973 1012 3.117474 AGCTCGCCTCCTATATGGCTATA 60.117 47.826 0.00 0.00 46.42 1.31
974 1013 3.829601 GCTCGCCTCCTATATGGCTATAT 59.170 47.826 7.78 7.78 46.42 0.86
975 1014 5.010933 GCTCGCCTCCTATATGGCTATATA 58.989 45.833 9.22 9.22 46.42 0.86
1059 1178 5.727434 CAAGGAAAGATTAGCTGCCATTTT 58.273 37.500 0.00 0.00 0.00 1.82
1286 1423 0.317103 GGGACGTCGAGATCATCACG 60.317 60.000 9.92 0.00 37.98 4.35
1370 4569 7.120923 TGGTGAGTAAATCATAAGAGTACCC 57.879 40.000 0.00 0.00 40.92 3.69
1424 4732 5.517904 AGTACTAAATCATAGCGTCGTTCC 58.482 41.667 0.00 0.00 0.00 3.62
1613 4947 1.556911 TGGAACTCTCCTCCATCTTGC 59.443 52.381 0.00 0.00 42.94 4.01
1896 8660 1.280133 CCTCAAGGACATCAAGCTCCA 59.720 52.381 0.00 0.00 37.39 3.86
1936 8700 1.878522 CGTGCAGAGCCCGTATCAC 60.879 63.158 0.00 0.00 0.00 3.06
1942 8706 2.271800 CAGAGCCCGTATCACACTTTC 58.728 52.381 0.00 0.00 0.00 2.62
2304 9139 5.008613 GGATGTCATGCGTGGTATTATGTTT 59.991 40.000 5.98 0.00 0.00 2.83
2368 9203 4.466370 GCATAGTGTGGGCTATATGGAGTA 59.534 45.833 0.00 0.00 31.10 2.59
2427 9270 4.139786 CCATGACCCATGAAGTTATGAGG 58.860 47.826 16.92 0.91 43.81 3.86
2452 9295 6.983474 CACATTTTTGTGGTCCTTTTCTTT 57.017 33.333 0.00 0.00 36.24 2.52
2697 9540 0.618458 TAGGGGTCCACTGACATTGC 59.382 55.000 2.99 0.00 43.65 3.56
2789 9632 1.400990 CTAACGCTTCGGTTCCGTCG 61.401 60.000 11.04 14.07 33.59 5.12
2810 9653 0.242825 CTTAGGCGTCGTGAAGTCCA 59.757 55.000 0.00 0.00 0.00 4.02
2903 11821 4.581824 TGTGAGCAGCTTGATTCTTTCTTT 59.418 37.500 0.00 0.00 0.00 2.52
2911 11829 5.829924 AGCTTGATTCTTTCTTTGTTGGAGA 59.170 36.000 0.00 0.00 0.00 3.71
2968 11886 2.815647 CTCGCGTCCTTCCTTGCC 60.816 66.667 5.77 0.00 0.00 4.52
2982 11900 1.891060 CTTGCCAGACGTGAACTCGC 61.891 60.000 0.00 0.00 0.00 5.03
3037 11955 3.766691 GGACTCGTGCGGGGCTAA 61.767 66.667 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.512926 GTCGTTGTTGCCATGAGAGT 58.487 50.000 0.00 0.00 0.00 3.24
1 2 0.439985 CGTCGTTGTTGCCATGAGAG 59.560 55.000 0.00 0.00 0.00 3.20
2 3 0.032815 TCGTCGTTGTTGCCATGAGA 59.967 50.000 0.00 0.00 0.00 3.27
5 6 0.179192 CCATCGTCGTTGTTGCCATG 60.179 55.000 2.82 0.00 0.00 3.66
6 7 0.321210 TCCATCGTCGTTGTTGCCAT 60.321 50.000 2.82 0.00 0.00 4.40
7 8 0.533085 TTCCATCGTCGTTGTTGCCA 60.533 50.000 2.82 0.00 0.00 4.92
8 9 0.589223 TTTCCATCGTCGTTGTTGCC 59.411 50.000 2.82 0.00 0.00 4.52
9 10 1.670326 GTTTCCATCGTCGTTGTTGC 58.330 50.000 2.82 0.00 0.00 4.17
10 11 1.523515 TCGTTTCCATCGTCGTTGTTG 59.476 47.619 2.82 0.00 0.00 3.33
11 12 1.523934 GTCGTTTCCATCGTCGTTGTT 59.476 47.619 2.82 0.00 0.00 2.83
12 13 1.134226 GTCGTTTCCATCGTCGTTGT 58.866 50.000 2.82 0.00 0.00 3.32
13 14 0.090676 CGTCGTTTCCATCGTCGTTG 59.909 55.000 0.00 0.00 35.85 4.10
14 15 0.040157 TCGTCGTTTCCATCGTCGTT 60.040 50.000 0.00 0.00 39.70 3.85
15 16 0.453950 CTCGTCGTTTCCATCGTCGT 60.454 55.000 0.00 0.00 39.70 4.34
16 17 1.132199 CCTCGTCGTTTCCATCGTCG 61.132 60.000 0.00 0.00 39.95 5.12
17 18 0.169672 TCCTCGTCGTTTCCATCGTC 59.830 55.000 0.00 0.00 0.00 4.20
18 19 0.170561 CTCCTCGTCGTTTCCATCGT 59.829 55.000 0.00 0.00 0.00 3.73
19 20 0.525668 CCTCCTCGTCGTTTCCATCG 60.526 60.000 0.00 0.00 0.00 3.84
20 21 0.531200 ACCTCCTCGTCGTTTCCATC 59.469 55.000 0.00 0.00 0.00 3.51
21 22 0.246635 CACCTCCTCGTCGTTTCCAT 59.753 55.000 0.00 0.00 0.00 3.41
22 23 1.663739 CACCTCCTCGTCGTTTCCA 59.336 57.895 0.00 0.00 0.00 3.53
23 24 1.737008 GCACCTCCTCGTCGTTTCC 60.737 63.158 0.00 0.00 0.00 3.13
24 25 1.737008 GGCACCTCCTCGTCGTTTC 60.737 63.158 0.00 0.00 0.00 2.78
25 26 2.342648 GGCACCTCCTCGTCGTTT 59.657 61.111 0.00 0.00 0.00 3.60
26 27 4.052229 CGGCACCTCCTCGTCGTT 62.052 66.667 0.00 0.00 0.00 3.85
49 50 3.876198 GTACGCATGGCCGCCTTG 61.876 66.667 18.79 18.79 0.00 3.61
53 54 4.000557 CATCGTACGCATGGCCGC 62.001 66.667 11.24 0.00 0.00 6.53
54 55 2.584970 ACATCGTACGCATGGCCG 60.585 61.111 22.67 0.00 0.00 6.13
55 56 1.520564 TGACATCGTACGCATGGCC 60.521 57.895 22.42 16.51 0.00 5.36
56 57 0.806102 AGTGACATCGTACGCATGGC 60.806 55.000 22.67 21.42 0.00 4.40
57 58 2.485266 TAGTGACATCGTACGCATGG 57.515 50.000 22.67 11.31 0.00 3.66
58 59 2.980476 GGATAGTGACATCGTACGCATG 59.020 50.000 11.24 16.57 0.00 4.06
59 60 2.350484 CGGATAGTGACATCGTACGCAT 60.350 50.000 11.24 2.26 0.00 4.73
60 61 1.003223 CGGATAGTGACATCGTACGCA 60.003 52.381 11.24 0.00 0.00 5.24
61 62 1.671469 CGGATAGTGACATCGTACGC 58.329 55.000 11.24 0.00 0.00 4.42
62 63 1.263484 AGCGGATAGTGACATCGTACG 59.737 52.381 9.53 9.53 0.00 3.67
63 64 2.651701 CAGCGGATAGTGACATCGTAC 58.348 52.381 0.00 0.00 0.00 3.67
64 65 1.001706 GCAGCGGATAGTGACATCGTA 60.002 52.381 0.00 0.00 0.00 3.43
65 66 0.249073 GCAGCGGATAGTGACATCGT 60.249 55.000 0.00 0.00 0.00 3.73
66 67 0.941463 GGCAGCGGATAGTGACATCG 60.941 60.000 0.00 0.00 0.00 3.84
67 68 0.390860 AGGCAGCGGATAGTGACATC 59.609 55.000 0.00 0.00 0.00 3.06
68 69 0.390860 GAGGCAGCGGATAGTGACAT 59.609 55.000 0.00 0.00 0.00 3.06
69 70 1.816537 GAGGCAGCGGATAGTGACA 59.183 57.895 0.00 0.00 0.00 3.58
70 71 1.299468 CGAGGCAGCGGATAGTGAC 60.299 63.158 0.00 0.00 0.00 3.67
71 72 3.120105 CGAGGCAGCGGATAGTGA 58.880 61.111 0.00 0.00 0.00 3.41
72 73 2.659897 GCGAGGCAGCGGATAGTG 60.660 66.667 2.13 0.00 0.00 2.74
80 81 0.458025 ACTAAACTACGCGAGGCAGC 60.458 55.000 15.93 0.00 0.00 5.25
81 82 1.992170 AACTAAACTACGCGAGGCAG 58.008 50.000 15.93 6.68 0.00 4.85
82 83 2.443887 AAACTAAACTACGCGAGGCA 57.556 45.000 15.93 0.00 0.00 4.75
83 84 5.460571 AATAAAACTAAACTACGCGAGGC 57.539 39.130 15.93 0.00 0.00 4.70
84 85 9.977762 AATAAAATAAAACTAAACTACGCGAGG 57.022 29.630 15.93 7.40 0.00 4.63
113 114 8.418662 GGGTTAAGAAAAACAAGTTCACCTAAT 58.581 33.333 0.00 0.00 0.00 1.73
114 115 7.396623 TGGGTTAAGAAAAACAAGTTCACCTAA 59.603 33.333 0.00 0.00 0.00 2.69
115 116 6.890814 TGGGTTAAGAAAAACAAGTTCACCTA 59.109 34.615 0.00 0.00 0.00 3.08
116 117 5.717654 TGGGTTAAGAAAAACAAGTTCACCT 59.282 36.000 0.00 0.00 0.00 4.00
117 118 5.968254 TGGGTTAAGAAAAACAAGTTCACC 58.032 37.500 0.00 0.00 0.00 4.02
118 119 6.627243 ACTGGGTTAAGAAAAACAAGTTCAC 58.373 36.000 0.00 0.00 28.78 3.18
119 120 6.844097 ACTGGGTTAAGAAAAACAAGTTCA 57.156 33.333 0.00 0.00 28.78 3.18
120 121 7.198390 GGTACTGGGTTAAGAAAAACAAGTTC 58.802 38.462 0.00 0.00 32.91 3.01
121 122 6.183360 CGGTACTGGGTTAAGAAAAACAAGTT 60.183 38.462 0.00 0.00 32.91 2.66
122 123 5.297527 CGGTACTGGGTTAAGAAAAACAAGT 59.702 40.000 0.00 0.00 34.28 3.16
123 124 5.528320 TCGGTACTGGGTTAAGAAAAACAAG 59.472 40.000 0.85 0.00 0.00 3.16
124 125 5.435291 TCGGTACTGGGTTAAGAAAAACAA 58.565 37.500 0.85 0.00 0.00 2.83
125 126 5.033589 TCGGTACTGGGTTAAGAAAAACA 57.966 39.130 0.85 0.00 0.00 2.83
126 127 5.618418 GCATCGGTACTGGGTTAAGAAAAAC 60.618 44.000 0.85 0.00 0.00 2.43
127 128 4.456566 GCATCGGTACTGGGTTAAGAAAAA 59.543 41.667 0.85 0.00 0.00 1.94
128 129 4.004982 GCATCGGTACTGGGTTAAGAAAA 58.995 43.478 0.85 0.00 0.00 2.29
129 130 3.008157 TGCATCGGTACTGGGTTAAGAAA 59.992 43.478 0.85 0.00 0.00 2.52
130 131 2.568062 TGCATCGGTACTGGGTTAAGAA 59.432 45.455 0.85 0.00 0.00 2.52
131 132 2.181125 TGCATCGGTACTGGGTTAAGA 58.819 47.619 0.85 0.00 0.00 2.10
132 133 2.684001 TGCATCGGTACTGGGTTAAG 57.316 50.000 0.85 0.00 0.00 1.85
133 134 3.075884 GTTTGCATCGGTACTGGGTTAA 58.924 45.455 0.85 0.00 0.00 2.01
134 135 2.702261 GTTTGCATCGGTACTGGGTTA 58.298 47.619 0.85 0.00 0.00 2.85
135 136 1.530323 GTTTGCATCGGTACTGGGTT 58.470 50.000 0.85 0.00 0.00 4.11
136 137 0.672401 CGTTTGCATCGGTACTGGGT 60.672 55.000 0.85 0.00 0.00 4.51
137 138 1.366111 CCGTTTGCATCGGTACTGGG 61.366 60.000 18.62 0.00 42.62 4.45
138 139 2.086510 CCGTTTGCATCGGTACTGG 58.913 57.895 18.62 0.00 42.62 4.00
145 146 4.207635 ACGTGTATATAACCGTTTGCATCG 59.792 41.667 0.00 5.08 33.13 3.84
146 147 5.428770 CACGTGTATATAACCGTTTGCATC 58.571 41.667 7.58 0.00 34.23 3.91
147 148 4.260456 GCACGTGTATATAACCGTTTGCAT 60.260 41.667 18.38 0.00 34.23 3.96
148 149 3.062369 GCACGTGTATATAACCGTTTGCA 59.938 43.478 18.38 0.00 34.23 4.08
149 150 3.062369 TGCACGTGTATATAACCGTTTGC 59.938 43.478 18.38 7.64 34.23 3.68
150 151 4.843879 TGCACGTGTATATAACCGTTTG 57.156 40.909 18.38 0.00 34.23 2.93
151 152 6.019640 GTGTATGCACGTGTATATAACCGTTT 60.020 38.462 25.81 2.24 34.23 3.60
152 153 5.459762 GTGTATGCACGTGTATATAACCGTT 59.540 40.000 25.81 2.96 34.23 4.44
153 154 4.977963 GTGTATGCACGTGTATATAACCGT 59.022 41.667 25.81 7.44 36.03 4.83
154 155 5.490472 GTGTATGCACGTGTATATAACCG 57.510 43.478 25.81 0.00 35.75 4.44
167 168 2.434336 TCATAGGGGTGAGTGTATGCAC 59.566 50.000 5.71 5.71 45.57 4.57
168 169 2.758130 TCATAGGGGTGAGTGTATGCA 58.242 47.619 0.00 0.00 0.00 3.96
169 170 3.118408 TGTTCATAGGGGTGAGTGTATGC 60.118 47.826 0.00 0.00 0.00 3.14
170 171 4.081142 TGTGTTCATAGGGGTGAGTGTATG 60.081 45.833 0.00 0.00 0.00 2.39
171 172 4.081087 GTGTGTTCATAGGGGTGAGTGTAT 60.081 45.833 0.00 0.00 0.00 2.29
172 173 3.259876 GTGTGTTCATAGGGGTGAGTGTA 59.740 47.826 0.00 0.00 0.00 2.90
173 174 2.038557 GTGTGTTCATAGGGGTGAGTGT 59.961 50.000 0.00 0.00 0.00 3.55
174 175 2.038426 TGTGTGTTCATAGGGGTGAGTG 59.962 50.000 0.00 0.00 0.00 3.51
175 176 2.038557 GTGTGTGTTCATAGGGGTGAGT 59.961 50.000 0.00 0.00 0.00 3.41
176 177 2.699954 GTGTGTGTTCATAGGGGTGAG 58.300 52.381 0.00 0.00 0.00 3.51
177 178 1.001520 CGTGTGTGTTCATAGGGGTGA 59.998 52.381 0.00 0.00 0.00 4.02
178 179 1.438651 CGTGTGTGTTCATAGGGGTG 58.561 55.000 0.00 0.00 0.00 4.61
179 180 0.321298 GCGTGTGTGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
180 181 0.321210 TGCGTGTGTGTTCATAGGGG 60.321 55.000 0.00 0.00 0.00 4.79
181 182 0.796312 GTGCGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
182 183 1.194547 GTGTGCGTGTGTGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
183 184 1.194547 GGTGTGCGTGTGTGTTCATAG 59.805 52.381 0.00 0.00 0.00 2.23
184 185 1.222300 GGTGTGCGTGTGTGTTCATA 58.778 50.000 0.00 0.00 0.00 2.15
185 186 1.444119 GGGTGTGCGTGTGTGTTCAT 61.444 55.000 0.00 0.00 0.00 2.57
186 187 2.109739 GGGTGTGCGTGTGTGTTCA 61.110 57.895 0.00 0.00 0.00 3.18
187 188 0.531090 TAGGGTGTGCGTGTGTGTTC 60.531 55.000 0.00 0.00 0.00 3.18
188 189 0.812412 GTAGGGTGTGCGTGTGTGTT 60.812 55.000 0.00 0.00 0.00 3.32
189 190 1.227438 GTAGGGTGTGCGTGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
190 191 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
191 192 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
192 193 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
193 194 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
194 195 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
195 196 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
196 197 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
197 198 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
198 199 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
199 200 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
200 201 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
201 202 0.341961 TGTGCTCATAGGGGTAGGGT 59.658 55.000 0.00 0.00 0.00 4.34
202 203 1.625818 GATGTGCTCATAGGGGTAGGG 59.374 57.143 0.32 0.00 34.06 3.53
203 204 1.625818 GGATGTGCTCATAGGGGTAGG 59.374 57.143 0.32 0.00 34.06 3.18
204 205 1.273606 CGGATGTGCTCATAGGGGTAG 59.726 57.143 0.32 0.00 34.06 3.18
205 206 1.133294 TCGGATGTGCTCATAGGGGTA 60.133 52.381 0.32 0.00 34.06 3.69
206 207 0.398522 TCGGATGTGCTCATAGGGGT 60.399 55.000 0.32 0.00 34.06 4.95
207 208 0.758734 TTCGGATGTGCTCATAGGGG 59.241 55.000 0.32 0.00 34.06 4.79
208 209 2.103094 TCTTTCGGATGTGCTCATAGGG 59.897 50.000 0.32 0.00 34.06 3.53
209 210 3.126831 GTCTTTCGGATGTGCTCATAGG 58.873 50.000 0.32 0.00 34.06 2.57
210 211 3.801050 CAGTCTTTCGGATGTGCTCATAG 59.199 47.826 0.32 0.00 34.06 2.23
211 212 3.447229 TCAGTCTTTCGGATGTGCTCATA 59.553 43.478 0.32 0.00 34.06 2.15
212 213 2.234661 TCAGTCTTTCGGATGTGCTCAT 59.765 45.455 0.00 0.00 36.95 2.90
213 214 1.618343 TCAGTCTTTCGGATGTGCTCA 59.382 47.619 0.00 0.00 0.00 4.26
214 215 2.266554 CTCAGTCTTTCGGATGTGCTC 58.733 52.381 0.00 0.00 0.00 4.26
215 216 1.674221 GCTCAGTCTTTCGGATGTGCT 60.674 52.381 0.00 0.00 31.36 4.40
216 217 0.723981 GCTCAGTCTTTCGGATGTGC 59.276 55.000 0.00 0.00 0.00 4.57
217 218 1.363744 GGCTCAGTCTTTCGGATGTG 58.636 55.000 0.00 0.00 0.00 3.21
218 219 0.108615 CGGCTCAGTCTTTCGGATGT 60.109 55.000 0.00 0.00 0.00 3.06
219 220 0.173481 TCGGCTCAGTCTTTCGGATG 59.827 55.000 0.00 0.00 0.00 3.51
220 221 0.173708 GTCGGCTCAGTCTTTCGGAT 59.826 55.000 0.00 0.00 0.00 4.18
221 222 1.176619 TGTCGGCTCAGTCTTTCGGA 61.177 55.000 0.00 0.00 0.00 4.55
222 223 0.108615 ATGTCGGCTCAGTCTTTCGG 60.109 55.000 0.00 0.00 0.00 4.30
223 224 2.561733 TATGTCGGCTCAGTCTTTCG 57.438 50.000 0.00 0.00 0.00 3.46
224 225 4.046938 TGATATGTCGGCTCAGTCTTTC 57.953 45.455 0.00 0.00 0.00 2.62
225 226 4.679373 ATGATATGTCGGCTCAGTCTTT 57.321 40.909 0.00 0.00 0.00 2.52
226 227 4.679373 AATGATATGTCGGCTCAGTCTT 57.321 40.909 0.00 0.00 0.00 3.01
227 228 4.679373 AAATGATATGTCGGCTCAGTCT 57.321 40.909 0.00 0.00 0.00 3.24
228 229 4.811024 TCAAAATGATATGTCGGCTCAGTC 59.189 41.667 0.00 0.00 0.00 3.51
229 230 4.769688 TCAAAATGATATGTCGGCTCAGT 58.230 39.130 0.00 0.00 0.00 3.41
230 231 5.739752 TTCAAAATGATATGTCGGCTCAG 57.260 39.130 0.00 0.00 0.00 3.35
231 232 6.698008 ATTTCAAAATGATATGTCGGCTCA 57.302 33.333 0.00 0.00 0.00 4.26
232 233 7.992180 AAATTTCAAAATGATATGTCGGCTC 57.008 32.000 0.00 0.00 0.00 4.70
233 234 7.643764 CGTAAATTTCAAAATGATATGTCGGCT 59.356 33.333 0.00 0.00 0.00 5.52
234 235 7.642194 TCGTAAATTTCAAAATGATATGTCGGC 59.358 33.333 0.00 0.00 0.00 5.54
235 236 9.497030 TTCGTAAATTTCAAAATGATATGTCGG 57.503 29.630 0.00 0.00 0.00 4.79
242 243 9.277565 CGATGACTTCGTAAATTTCAAAATGAT 57.722 29.630 0.00 0.00 43.01 2.45
243 244 8.653984 CGATGACTTCGTAAATTTCAAAATGA 57.346 30.769 0.00 0.00 43.01 2.57
259 260 1.534175 CGAGGTGCCTACGATGACTTC 60.534 57.143 0.00 0.00 0.00 3.01
260 261 0.456221 CGAGGTGCCTACGATGACTT 59.544 55.000 0.00 0.00 0.00 3.01
261 262 0.680280 ACGAGGTGCCTACGATGACT 60.680 55.000 13.88 0.00 0.00 3.41
262 263 0.248539 GACGAGGTGCCTACGATGAC 60.249 60.000 13.88 0.00 0.00 3.06
263 264 0.678684 TGACGAGGTGCCTACGATGA 60.679 55.000 13.88 0.00 0.00 2.92
264 265 0.385751 ATGACGAGGTGCCTACGATG 59.614 55.000 13.88 0.00 0.00 3.84
265 266 0.669077 GATGACGAGGTGCCTACGAT 59.331 55.000 13.88 2.36 0.00 3.73
266 267 1.712018 CGATGACGAGGTGCCTACGA 61.712 60.000 13.88 0.00 42.66 3.43
267 268 1.298413 CGATGACGAGGTGCCTACG 60.298 63.158 0.00 0.00 42.66 3.51
268 269 2.104267 TCGATGACGAGGTGCCTAC 58.896 57.895 0.00 0.00 43.81 3.18
269 270 4.649845 TCGATGACGAGGTGCCTA 57.350 55.556 0.00 0.00 43.81 3.93
277 278 1.467342 AGACGTTCATGTCGATGACGA 59.533 47.619 16.65 0.00 46.56 4.20
278 279 1.840741 GAGACGTTCATGTCGATGACG 59.159 52.381 16.65 10.09 43.70 4.35
279 280 2.159366 AGGAGACGTTCATGTCGATGAC 60.159 50.000 16.65 0.00 43.70 3.06
280 281 2.092323 AGGAGACGTTCATGTCGATGA 58.908 47.619 16.65 0.00 43.70 2.92
281 282 2.568696 AGGAGACGTTCATGTCGATG 57.431 50.000 16.65 3.02 43.70 3.84
282 283 2.159226 GGAAGGAGACGTTCATGTCGAT 60.159 50.000 16.65 7.35 43.70 3.59
283 284 1.201647 GGAAGGAGACGTTCATGTCGA 59.798 52.381 16.65 0.00 43.70 4.20
284 285 1.067846 TGGAAGGAGACGTTCATGTCG 60.068 52.381 10.36 10.36 43.70 4.35
285 286 2.028930 AGTGGAAGGAGACGTTCATGTC 60.029 50.000 0.00 0.00 39.21 3.06
286 287 1.971357 AGTGGAAGGAGACGTTCATGT 59.029 47.619 0.00 0.00 0.00 3.21
287 288 2.029020 TCAGTGGAAGGAGACGTTCATG 60.029 50.000 0.00 0.00 0.00 3.07
288 289 2.248248 TCAGTGGAAGGAGACGTTCAT 58.752 47.619 0.00 0.00 0.00 2.57
289 290 1.699730 TCAGTGGAAGGAGACGTTCA 58.300 50.000 0.00 0.00 0.00 3.18
290 291 2.814280 TTCAGTGGAAGGAGACGTTC 57.186 50.000 0.00 0.00 0.00 3.95
291 292 2.872038 GCATTCAGTGGAAGGAGACGTT 60.872 50.000 0.00 0.00 36.97 3.99
292 293 1.338200 GCATTCAGTGGAAGGAGACGT 60.338 52.381 0.00 0.00 36.97 4.34
293 294 1.363744 GCATTCAGTGGAAGGAGACG 58.636 55.000 0.00 0.00 36.97 4.18
294 295 1.363744 CGCATTCAGTGGAAGGAGAC 58.636 55.000 0.00 0.00 36.86 3.36
295 296 0.391661 GCGCATTCAGTGGAAGGAGA 60.392 55.000 0.30 0.00 36.86 3.71
296 297 0.674581 TGCGCATTCAGTGGAAGGAG 60.675 55.000 5.66 0.00 36.97 3.69
297 298 0.035152 ATGCGCATTCAGTGGAAGGA 60.035 50.000 19.28 0.00 36.97 3.36
298 299 0.379669 GATGCGCATTCAGTGGAAGG 59.620 55.000 26.12 0.00 37.84 3.46
299 300 0.027194 CGATGCGCATTCAGTGGAAG 59.973 55.000 26.12 4.12 36.25 3.46
300 301 2.089017 CGATGCGCATTCAGTGGAA 58.911 52.632 26.12 0.00 37.45 3.53
301 302 3.798380 CGATGCGCATTCAGTGGA 58.202 55.556 26.12 0.00 0.00 4.02
312 313 0.878523 TTAGGATTTCCGGCGATGCG 60.879 55.000 9.30 0.00 42.08 4.73
313 314 1.305201 TTTAGGATTTCCGGCGATGC 58.695 50.000 9.30 0.00 42.08 3.91
314 315 5.682943 TTATTTTAGGATTTCCGGCGATG 57.317 39.130 9.30 0.00 42.08 3.84
315 316 6.894339 ATTTATTTTAGGATTTCCGGCGAT 57.106 33.333 9.30 0.00 42.08 4.58
316 317 6.702716 AATTTATTTTAGGATTTCCGGCGA 57.297 33.333 9.30 0.00 42.08 5.54
317 318 8.502161 CTAAATTTATTTTAGGATTTCCGGCG 57.498 34.615 0.00 0.00 42.05 6.46
339 340 9.515226 AGTCTTTGTGCTTGTATTTATTCCTAA 57.485 29.630 0.00 0.00 0.00 2.69
340 341 9.515226 AAGTCTTTGTGCTTGTATTTATTCCTA 57.485 29.630 0.00 0.00 0.00 2.94
341 342 8.299570 CAAGTCTTTGTGCTTGTATTTATTCCT 58.700 33.333 0.00 0.00 37.78 3.36
342 343 8.296713 TCAAGTCTTTGTGCTTGTATTTATTCC 58.703 33.333 0.00 0.00 41.83 3.01
343 344 9.677567 TTCAAGTCTTTGTGCTTGTATTTATTC 57.322 29.630 0.00 0.00 41.83 1.75
344 345 9.463443 GTTCAAGTCTTTGTGCTTGTATTTATT 57.537 29.630 0.00 0.00 41.83 1.40
345 346 8.082242 GGTTCAAGTCTTTGTGCTTGTATTTAT 58.918 33.333 0.00 0.00 41.83 1.40
346 347 7.422399 GGTTCAAGTCTTTGTGCTTGTATTTA 58.578 34.615 0.00 0.00 41.83 1.40
347 348 6.273071 GGTTCAAGTCTTTGTGCTTGTATTT 58.727 36.000 0.00 0.00 41.83 1.40
348 349 5.221244 GGGTTCAAGTCTTTGTGCTTGTATT 60.221 40.000 0.00 0.00 41.83 1.89
349 350 4.278419 GGGTTCAAGTCTTTGTGCTTGTAT 59.722 41.667 0.00 0.00 41.83 2.29
350 351 3.630312 GGGTTCAAGTCTTTGTGCTTGTA 59.370 43.478 0.00 0.00 41.83 2.41
351 352 2.427095 GGGTTCAAGTCTTTGTGCTTGT 59.573 45.455 0.00 0.00 41.83 3.16
352 353 2.689983 AGGGTTCAAGTCTTTGTGCTTG 59.310 45.455 0.00 0.00 42.32 4.01
353 354 2.689983 CAGGGTTCAAGTCTTTGTGCTT 59.310 45.455 0.00 0.00 35.73 3.91
354 355 2.301346 CAGGGTTCAAGTCTTTGTGCT 58.699 47.619 0.00 0.00 35.73 4.40
355 356 1.338020 CCAGGGTTCAAGTCTTTGTGC 59.662 52.381 0.00 0.00 35.73 4.57
356 357 2.358898 CACCAGGGTTCAAGTCTTTGTG 59.641 50.000 0.00 0.00 35.73 3.33
357 358 2.654863 CACCAGGGTTCAAGTCTTTGT 58.345 47.619 0.00 0.00 35.73 2.83
358 359 1.956477 CCACCAGGGTTCAAGTCTTTG 59.044 52.381 0.00 0.00 35.57 2.77
359 360 2.364972 CCACCAGGGTTCAAGTCTTT 57.635 50.000 0.00 0.00 0.00 2.52
371 372 1.227383 GGTATTCCAGCCCACCAGG 59.773 63.158 0.00 0.00 39.47 4.45
372 373 0.394352 GTGGTATTCCAGCCCACCAG 60.394 60.000 0.00 0.00 45.24 4.00
373 374 1.136961 TGTGGTATTCCAGCCCACCA 61.137 55.000 5.66 0.00 46.49 4.17
374 375 0.039035 TTGTGGTATTCCAGCCCACC 59.961 55.000 5.66 0.00 46.49 4.61
376 377 1.064017 GGATTGTGGTATTCCAGCCCA 60.064 52.381 0.00 0.00 45.24 5.36
377 378 1.692411 GGATTGTGGTATTCCAGCCC 58.308 55.000 0.00 0.00 45.24 5.19
378 379 1.215423 AGGGATTGTGGTATTCCAGCC 59.785 52.381 0.00 0.00 45.24 4.85
379 380 2.173569 AGAGGGATTGTGGTATTCCAGC 59.826 50.000 0.00 0.00 45.24 4.85
380 381 5.368989 GTTAGAGGGATTGTGGTATTCCAG 58.631 45.833 0.00 0.00 45.24 3.86
381 382 4.165372 GGTTAGAGGGATTGTGGTATTCCA 59.835 45.833 0.00 0.00 42.05 3.53
382 383 4.165372 TGGTTAGAGGGATTGTGGTATTCC 59.835 45.833 0.00 0.00 0.00 3.01
383 384 5.367945 TGGTTAGAGGGATTGTGGTATTC 57.632 43.478 0.00 0.00 0.00 1.75
384 385 5.163088 GGATGGTTAGAGGGATTGTGGTATT 60.163 44.000 0.00 0.00 0.00 1.89
385 386 4.351111 GGATGGTTAGAGGGATTGTGGTAT 59.649 45.833 0.00 0.00 0.00 2.73
386 387 3.714798 GGATGGTTAGAGGGATTGTGGTA 59.285 47.826 0.00 0.00 0.00 3.25
387 388 2.509964 GGATGGTTAGAGGGATTGTGGT 59.490 50.000 0.00 0.00 0.00 4.16
388 389 2.509548 TGGATGGTTAGAGGGATTGTGG 59.490 50.000 0.00 0.00 0.00 4.17
389 390 3.931907 TGGATGGTTAGAGGGATTGTG 57.068 47.619 0.00 0.00 0.00 3.33
390 391 3.053619 GGTTGGATGGTTAGAGGGATTGT 60.054 47.826 0.00 0.00 0.00 2.71
391 392 3.053693 TGGTTGGATGGTTAGAGGGATTG 60.054 47.826 0.00 0.00 0.00 2.67
392 393 3.053619 GTGGTTGGATGGTTAGAGGGATT 60.054 47.826 0.00 0.00 0.00 3.01
393 394 2.509964 GTGGTTGGATGGTTAGAGGGAT 59.490 50.000 0.00 0.00 0.00 3.85
394 395 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
395 396 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
396 397 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
397 398 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
398 399 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
399 400 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
400 401 3.653836 ACTAACCTGTGGTTGGATGGTTA 59.346 43.478 17.52 0.00 45.18 2.85
401 402 2.445525 ACTAACCTGTGGTTGGATGGTT 59.554 45.455 17.52 0.00 45.18 3.67
402 403 2.062636 ACTAACCTGTGGTTGGATGGT 58.937 47.619 17.52 4.64 45.18 3.55
403 404 2.879103 ACTAACCTGTGGTTGGATGG 57.121 50.000 17.52 4.14 45.18 3.51
404 405 3.750371 TGAACTAACCTGTGGTTGGATG 58.250 45.455 17.52 6.12 45.18 3.51
405 406 3.394606 ACTGAACTAACCTGTGGTTGGAT 59.605 43.478 17.52 7.46 45.18 3.41
406 407 2.775384 ACTGAACTAACCTGTGGTTGGA 59.225 45.455 17.52 0.00 45.18 3.53
407 408 3.208747 ACTGAACTAACCTGTGGTTGG 57.791 47.619 11.78 11.16 46.35 3.77
408 409 4.196193 TCAACTGAACTAACCTGTGGTTG 58.804 43.478 11.78 0.00 46.35 3.77
410 411 4.497291 TTCAACTGAACTAACCTGTGGT 57.503 40.909 0.00 0.00 37.65 4.16
425 426 5.100259 CGGACGATATGTAACAGTTCAACT 58.900 41.667 0.00 0.00 0.00 3.16
426 427 4.266976 CCGGACGATATGTAACAGTTCAAC 59.733 45.833 0.00 0.00 0.00 3.18
427 428 4.082081 ACCGGACGATATGTAACAGTTCAA 60.082 41.667 9.46 0.00 0.00 2.69
428 429 3.444742 ACCGGACGATATGTAACAGTTCA 59.555 43.478 9.46 0.00 0.00 3.18
429 430 4.037858 ACCGGACGATATGTAACAGTTC 57.962 45.455 9.46 0.00 0.00 3.01
430 431 4.460948 AACCGGACGATATGTAACAGTT 57.539 40.909 9.46 0.00 0.00 3.16
431 432 4.082081 TCAAACCGGACGATATGTAACAGT 60.082 41.667 9.46 0.00 0.00 3.55
432 433 4.426416 TCAAACCGGACGATATGTAACAG 58.574 43.478 9.46 0.00 0.00 3.16
433 434 4.453177 TCAAACCGGACGATATGTAACA 57.547 40.909 9.46 0.00 0.00 2.41
438 439 5.977171 TTACATTCAAACCGGACGATATG 57.023 39.130 9.46 8.72 0.00 1.78
448 449 3.840890 TCCACGCATTACATTCAAACC 57.159 42.857 0.00 0.00 0.00 3.27
455 457 3.350219 AGGAAGTTCCACGCATTACAT 57.650 42.857 23.87 0.00 39.61 2.29
459 461 5.722021 ATTTTAAGGAAGTTCCACGCATT 57.278 34.783 23.87 11.15 39.61 3.56
473 475 4.492791 ACAAACCGGACGAATTTTAAGG 57.507 40.909 9.46 0.00 0.00 2.69
484 486 1.008329 TCGAACACAACAAACCGGAC 58.992 50.000 9.46 0.00 0.00 4.79
494 496 4.091365 CGCAGATACTCAAATCGAACACAA 59.909 41.667 0.00 0.00 0.00 3.33
527 529 6.267471 AGGACAACTCCAATGCAGATTAAAAA 59.733 34.615 0.00 0.00 39.39 1.94
528 530 5.774690 AGGACAACTCCAATGCAGATTAAAA 59.225 36.000 0.00 0.00 39.39 1.52
529 531 5.324409 AGGACAACTCCAATGCAGATTAAA 58.676 37.500 0.00 0.00 39.39 1.52
530 532 4.922206 AGGACAACTCCAATGCAGATTAA 58.078 39.130 0.00 0.00 39.39 1.40
531 533 4.574674 AGGACAACTCCAATGCAGATTA 57.425 40.909 0.00 0.00 39.39 1.75
532 534 3.446442 AGGACAACTCCAATGCAGATT 57.554 42.857 0.00 0.00 39.39 2.40
535 537 3.012518 CCTTAGGACAACTCCAATGCAG 58.987 50.000 0.00 0.00 39.39 4.41
543 545 4.957296 TCAGTGTTTCCTTAGGACAACTC 58.043 43.478 19.27 16.85 0.00 3.01
556 558 6.000891 TGTCTATGCACATTTCAGTGTTTC 57.999 37.500 0.00 0.00 41.52 2.78
557 559 5.532406 ACTGTCTATGCACATTTCAGTGTTT 59.468 36.000 10.91 0.00 41.52 2.83
558 560 5.065914 ACTGTCTATGCACATTTCAGTGTT 58.934 37.500 10.91 0.00 41.52 3.32
564 566 5.611796 TGTCAACTGTCTATGCACATTTC 57.388 39.130 0.00 0.00 0.00 2.17
566 568 6.579666 ATTTGTCAACTGTCTATGCACATT 57.420 33.333 0.00 0.00 0.00 2.71
574 576 6.072175 GCCCAACATAATTTGTCAACTGTCTA 60.072 38.462 0.00 0.00 37.68 2.59
576 578 4.923281 GCCCAACATAATTTGTCAACTGTC 59.077 41.667 0.00 0.00 37.68 3.51
578 580 4.244862 GGCCCAACATAATTTGTCAACTG 58.755 43.478 0.00 0.00 37.68 3.16
579 581 3.260632 GGGCCCAACATAATTTGTCAACT 59.739 43.478 19.95 0.00 37.68 3.16
580 582 3.007398 TGGGCCCAACATAATTTGTCAAC 59.993 43.478 26.33 0.00 37.68 3.18
591 593 2.282180 GACGTGTGGGCCCAACAT 60.282 61.111 30.64 15.98 0.00 2.71
639 644 2.347114 CTGACACATGGACCCGCA 59.653 61.111 0.00 0.00 0.00 5.69
648 653 2.507110 AAGCTACGGCGCTGACACAT 62.507 55.000 25.98 1.59 44.37 3.21
667 672 1.715862 CCGATCGAGAGCTTCCGTGA 61.716 60.000 18.66 0.00 0.00 4.35
668 673 1.298713 CCGATCGAGAGCTTCCGTG 60.299 63.158 18.66 0.00 0.00 4.94
669 674 1.451567 TCCGATCGAGAGCTTCCGT 60.452 57.895 18.66 0.00 0.00 4.69
670 675 1.009449 GTCCGATCGAGAGCTTCCG 60.009 63.158 18.66 0.00 0.00 4.30
671 676 1.360911 GGTCCGATCGAGAGCTTCC 59.639 63.158 18.66 6.01 0.00 3.46
672 677 0.456221 TTGGTCCGATCGAGAGCTTC 59.544 55.000 25.38 9.17 32.93 3.86
673 678 0.895530 TTTGGTCCGATCGAGAGCTT 59.104 50.000 25.38 0.00 32.93 3.74
674 679 1.115467 ATTTGGTCCGATCGAGAGCT 58.885 50.000 25.38 11.38 32.93 4.09
675 680 2.795175 TATTTGGTCCGATCGAGAGC 57.205 50.000 18.66 20.38 0.00 4.09
676 681 6.255596 TCTTATATTTGGTCCGATCGAGAG 57.744 41.667 18.66 0.00 0.00 3.20
677 682 6.835819 ATCTTATATTTGGTCCGATCGAGA 57.164 37.500 18.66 9.51 0.00 4.04
678 683 7.385205 ACAAATCTTATATTTGGTCCGATCGAG 59.615 37.037 18.66 6.99 41.80 4.04
679 684 7.170828 CACAAATCTTATATTTGGTCCGATCGA 59.829 37.037 18.66 0.00 41.80 3.59
680 685 7.042051 ACACAAATCTTATATTTGGTCCGATCG 60.042 37.037 8.51 8.51 41.80 3.69
681 686 8.154649 ACACAAATCTTATATTTGGTCCGATC 57.845 34.615 13.36 0.00 41.80 3.69
682 687 8.519799 AACACAAATCTTATATTTGGTCCGAT 57.480 30.769 13.36 0.00 41.80 4.18
683 688 7.931578 AACACAAATCTTATATTTGGTCCGA 57.068 32.000 13.36 0.00 41.80 4.55
684 689 9.498307 GTAAACACAAATCTTATATTTGGTCCG 57.502 33.333 13.36 3.79 41.80 4.79
692 697 9.959721 ACAGGTCTGTAAACACAAATCTTATAT 57.040 29.630 1.24 0.00 42.90 0.86
708 713 3.447586 GCAGGAGTCATTACAGGTCTGTA 59.552 47.826 6.73 6.73 44.42 2.74
709 714 2.234908 GCAGGAGTCATTACAGGTCTGT 59.765 50.000 8.74 8.74 46.87 3.41
710 715 2.736719 CGCAGGAGTCATTACAGGTCTG 60.737 54.545 0.00 0.00 0.00 3.51
711 716 1.478510 CGCAGGAGTCATTACAGGTCT 59.521 52.381 0.00 0.00 0.00 3.85
712 717 1.927895 CGCAGGAGTCATTACAGGTC 58.072 55.000 0.00 0.00 0.00 3.85
730 735 1.298602 TGACCATGCGATCATTTCCG 58.701 50.000 0.00 0.00 0.00 4.30
731 736 3.489738 CCTTTGACCATGCGATCATTTCC 60.490 47.826 0.00 0.00 0.00 3.13
732 737 3.378112 TCCTTTGACCATGCGATCATTTC 59.622 43.478 0.00 0.00 0.00 2.17
733 738 3.129287 GTCCTTTGACCATGCGATCATTT 59.871 43.478 0.00 0.00 35.34 2.32
734 739 2.684881 GTCCTTTGACCATGCGATCATT 59.315 45.455 0.00 0.00 35.34 2.57
735 740 2.092753 AGTCCTTTGACCATGCGATCAT 60.093 45.455 0.00 0.00 42.81 2.45
736 741 1.278985 AGTCCTTTGACCATGCGATCA 59.721 47.619 0.00 0.00 42.81 2.92
737 742 2.029838 AGTCCTTTGACCATGCGATC 57.970 50.000 0.00 0.00 42.81 3.69
738 743 3.627395 TTAGTCCTTTGACCATGCGAT 57.373 42.857 0.00 0.00 42.81 4.58
739 744 3.410631 TTTAGTCCTTTGACCATGCGA 57.589 42.857 0.00 0.00 42.81 5.10
740 745 7.441157 TCTTATATTTAGTCCTTTGACCATGCG 59.559 37.037 0.00 0.00 42.81 4.73
741 746 8.677148 TCTTATATTTAGTCCTTTGACCATGC 57.323 34.615 0.00 0.00 42.81 4.06
782 788 0.321996 AAAGCTTCCCGACAGAGGAC 59.678 55.000 0.00 0.00 31.50 3.85
800 806 4.142556 GGAGAACAACGTGTGAAAGGAAAA 60.143 41.667 0.00 0.00 0.00 2.29
891 898 0.525761 GCGGCTATTTGTCAAAGGCA 59.474 50.000 20.29 3.66 35.66 4.75
936 943 1.604755 CGAGCTAGCTGTAGTAGGGTG 59.395 57.143 24.99 0.00 0.00 4.61
937 944 1.970092 CGAGCTAGCTGTAGTAGGGT 58.030 55.000 24.99 0.00 0.00 4.34
968 1007 4.872691 CAGGGCTTGCTGTGTATATATAGC 59.127 45.833 10.68 10.68 36.72 2.97
969 1008 6.042638 ACAGGGCTTGCTGTGTATATATAG 57.957 41.667 0.00 0.00 31.95 1.31
970 1009 6.433847 AACAGGGCTTGCTGTGTATATATA 57.566 37.500 0.00 0.00 33.66 0.86
971 1010 4.982241 ACAGGGCTTGCTGTGTATATAT 57.018 40.909 0.00 0.00 31.95 0.86
972 1011 4.444306 GGAACAGGGCTTGCTGTGTATATA 60.444 45.833 0.00 0.00 33.66 0.86
973 1012 3.545703 GAACAGGGCTTGCTGTGTATAT 58.454 45.455 0.00 0.00 33.66 0.86
974 1013 2.355716 GGAACAGGGCTTGCTGTGTATA 60.356 50.000 0.00 0.00 33.66 1.47
975 1014 1.614317 GGAACAGGGCTTGCTGTGTAT 60.614 52.381 0.00 0.00 33.66 2.29
1059 1178 1.066152 CCTCAGCTTCATCATCGTCGA 59.934 52.381 0.00 0.00 0.00 4.20
1124 1243 1.066908 CAGCTGCTACTAGACCTGCTC 59.933 57.143 0.00 0.00 32.50 4.26
1305 1442 0.392193 GACACCTCATGCCAGGAGTG 60.392 60.000 5.56 6.52 37.48 3.51
1356 1493 5.731924 AGAAGATGGGGGTACTCTTATGAT 58.268 41.667 0.00 0.00 29.64 2.45
1363 1500 2.765502 AGGAAGAAGATGGGGGTACTC 58.234 52.381 0.00 0.00 0.00 2.59
1364 1501 2.972153 AGGAAGAAGATGGGGGTACT 57.028 50.000 0.00 0.00 0.00 2.73
1367 4566 1.274416 TGCTAGGAAGAAGATGGGGGT 60.274 52.381 0.00 0.00 0.00 4.95
1370 4569 1.767681 AGCTGCTAGGAAGAAGATGGG 59.232 52.381 0.00 0.00 28.15 4.00
1600 4934 2.170187 ACTAGCAAGCAAGATGGAGGAG 59.830 50.000 0.00 0.00 0.00 3.69
1675 5119 5.087323 TGTTAGACCTTGATCCAGAGAACT 58.913 41.667 0.00 0.00 0.00 3.01
1678 5122 5.026121 ACATGTTAGACCTTGATCCAGAGA 58.974 41.667 0.00 0.00 0.00 3.10
1679 5123 5.114780 CACATGTTAGACCTTGATCCAGAG 58.885 45.833 0.00 0.00 0.00 3.35
1680 5124 4.532126 ACACATGTTAGACCTTGATCCAGA 59.468 41.667 0.00 0.00 0.00 3.86
1681 5125 4.836825 ACACATGTTAGACCTTGATCCAG 58.163 43.478 0.00 0.00 0.00 3.86
1936 8700 2.749621 GGCCTACACCTTGATGAAAGTG 59.250 50.000 0.00 0.00 33.66 3.16
1942 8706 1.819632 GCCGGCCTACACCTTGATG 60.820 63.158 18.11 0.00 0.00 3.07
2138 8960 6.534436 TGATAGTACTCTAACTCTCACACGAC 59.466 42.308 0.00 0.00 30.27 4.34
2304 9139 3.009363 TCCAAGATTGCACTCTCCAATCA 59.991 43.478 7.08 0.00 46.84 2.57
2368 9203 4.847198 TCATCCACAACAGAACTGCATAT 58.153 39.130 1.46 0.00 0.00 1.78
2789 9632 1.615502 GACTTCACGACGCCTAAGAC 58.384 55.000 10.34 2.48 0.00 3.01
2810 9653 1.003355 CACGCCAAGACCAGGATGT 60.003 57.895 0.00 0.00 0.00 3.06
2903 11821 0.694771 AGGCAGAGCATTCTCCAACA 59.305 50.000 0.00 0.00 40.22 3.33
2911 11829 0.615331 TCGAAAGGAGGCAGAGCATT 59.385 50.000 0.00 0.00 0.00 3.56
2946 11864 3.760035 GGAAGGACGCGAGGCAGA 61.760 66.667 15.93 0.00 45.40 4.26
2968 11886 2.710971 CGCAGCGAGTTCACGTCTG 61.711 63.158 9.98 0.00 38.93 3.51
2982 11900 1.094785 CATTTAGTCCAACCCCGCAG 58.905 55.000 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.