Multiple sequence alignment - TraesCS2D01G339600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G339600 chr2D 100.000 3119 0 0 1 3119 433669251 433666133 0.000000e+00 5760.0
1 TraesCS2D01G339600 chr2D 85.856 403 38 5 1 386 535755857 535756257 8.050000e-111 411.0
2 TraesCS2D01G339600 chr2B 94.094 999 34 8 720 1703 512623456 512622468 0.000000e+00 1495.0
3 TraesCS2D01G339600 chr2B 97.183 497 14 0 1704 2200 512622400 512621904 0.000000e+00 841.0
4 TraesCS2D01G339600 chr2B 90.602 415 39 0 2367 2781 512530192 512529778 4.550000e-153 551.0
5 TraesCS2D01G339600 chr2B 88.235 408 45 1 2367 2774 512502729 512502325 4.680000e-133 484.0
6 TraesCS2D01G339600 chr2B 91.445 339 28 1 2781 3119 512502139 512501802 6.090000e-127 464.0
7 TraesCS2D01G339600 chr2B 90.855 339 31 0 2781 3119 512525678 512525340 3.670000e-124 455.0
8 TraesCS2D01G339600 chr2B 89.676 339 34 1 2781 3119 512531990 512531653 6.180000e-117 431.0
9 TraesCS2D01G339600 chr2B 94.737 228 9 1 2139 2363 512621906 512621679 4.950000e-93 351.0
10 TraesCS2D01G339600 chr2A 87.164 670 36 23 1654 2301 553481745 553482386 0.000000e+00 715.0
11 TraesCS2D01G339600 chr2A 86.409 596 40 21 724 1315 553480650 553481208 5.720000e-172 614.0
12 TraesCS2D01G339600 chr2A 89.753 283 29 0 2792 3074 766142368 766142650 2.290000e-96 363.0
13 TraesCS2D01G339600 chr2A 84.831 356 39 7 1 344 471258019 471257667 8.280000e-91 344.0
14 TraesCS2D01G339600 chr2A 82.492 297 32 12 1310 1592 553481246 553481536 3.110000e-60 243.0
15 TraesCS2D01G339600 chr2A 95.522 134 6 0 578 711 323683968 323684101 6.770000e-52 215.0
16 TraesCS2D01G339600 chr2A 100.000 32 0 0 464 495 553480546 553480577 3.360000e-05 60.2
17 TraesCS2D01G339600 chr4A 85.788 387 48 6 1 382 632207792 632208176 1.350000e-108 403.0
18 TraesCS2D01G339600 chr4A 98.113 53 1 0 3067 3119 4469247 4469299 3.310000e-15 93.5
19 TraesCS2D01G339600 chr4D 84.804 408 41 13 1 387 337414687 337414280 1.050000e-104 390.0
20 TraesCS2D01G339600 chr7A 92.830 265 19 0 2810 3074 83768063 83767799 4.880000e-103 385.0
21 TraesCS2D01G339600 chr7A 98.113 53 1 0 3067 3119 499448490 499448542 3.310000e-15 93.5
22 TraesCS2D01G339600 chr7A 96.226 53 2 0 3067 3119 83765909 83765857 1.540000e-13 87.9
23 TraesCS2D01G339600 chr7A 96.226 53 2 0 3067 3119 518692469 518692521 1.540000e-13 87.9
24 TraesCS2D01G339600 chr6D 86.111 360 34 3 1 344 457643713 457643354 1.060000e-99 374.0
25 TraesCS2D01G339600 chr7D 85.989 364 31 9 1 344 582092511 582092874 3.800000e-99 372.0
26 TraesCS2D01G339600 chr7D 79.110 292 47 9 2343 2630 554879836 554879555 4.110000e-44 189.0
27 TraesCS2D01G339600 chr7D 93.077 130 7 2 580 709 564564409 564564536 4.110000e-44 189.0
28 TraesCS2D01G339600 chr3D 90.426 282 27 0 2793 3074 551076887 551077168 3.800000e-99 372.0
29 TraesCS2D01G339600 chr3D 84.182 373 30 16 1 344 398411303 398410931 4.980000e-88 335.0
30 TraesCS2D01G339600 chr3D 94.017 117 7 0 580 696 167553636 167553520 8.890000e-41 178.0
31 TraesCS2D01G339600 chr5B 85.515 359 36 2 2 344 460219218 460218860 8.220000e-96 361.0
32 TraesCS2D01G339600 chr5B 94.615 130 7 0 580 709 192633572 192633443 5.270000e-48 202.0
33 TraesCS2D01G339600 chr6B 89.399 283 30 0 2792 3074 159950023 159950305 1.060000e-94 357.0
34 TraesCS2D01G339600 chr6B 89.606 279 29 0 2796 3074 513858359 513858081 3.830000e-94 355.0
35 TraesCS2D01G339600 chr6B 85.552 353 34 11 1 336 529876950 529877302 1.380000e-93 353.0
36 TraesCS2D01G339600 chr6B 98.113 53 1 0 3067 3119 159950406 159950458 3.310000e-15 93.5
37 TraesCS2D01G339600 chr1A 89.680 281 27 1 2794 3074 428208320 428208042 1.060000e-94 357.0
38 TraesCS2D01G339600 chr1A 91.791 134 11 0 578 711 396462067 396461934 1.480000e-43 187.0
39 TraesCS2D01G339600 chr1A 91.045 134 12 0 580 713 590462264 590462397 6.870000e-42 182.0
40 TraesCS2D01G339600 chr1D 84.718 373 28 8 1 344 476459389 476459761 2.300000e-91 346.0
41 TraesCS2D01G339600 chr1D 100.000 28 0 0 2426 2453 96077306 96077279 6.000000e-03 52.8
42 TraesCS2D01G339600 chr3A 80.403 347 62 3 4 345 27153490 27153835 3.090000e-65 259.0
43 TraesCS2D01G339600 chr3A 80.286 350 63 3 1 345 27203406 27203754 3.090000e-65 259.0
44 TraesCS2D01G339600 chr3A 79.714 350 65 3 1 345 27114313 27114661 6.680000e-62 248.0
45 TraesCS2D01G339600 chr1B 78.199 422 55 14 1 389 487212919 487212502 5.200000e-58 235.0
46 TraesCS2D01G339600 chr1B 94.030 134 8 0 578 711 334249956 334250089 1.470000e-48 204.0
47 TraesCS2D01G339600 chr1B 87.234 94 12 0 621 714 540339734 540339641 1.180000e-19 108.0
48 TraesCS2D01G339600 chr7B 82.313 147 16 2 578 714 77434236 77434090 5.460000e-23 119.0
49 TraesCS2D01G339600 chr5A 96.226 53 2 0 3067 3119 477817371 477817423 1.540000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G339600 chr2D 433666133 433669251 3118 True 5760.000000 5760 100.00000 1 3119 1 chr2D.!!$R1 3118
1 TraesCS2D01G339600 chr2B 512621679 512623456 1777 True 895.666667 1495 95.33800 720 2363 3 chr2B.!!$R4 1643
2 TraesCS2D01G339600 chr2B 512529778 512531990 2212 True 491.000000 551 90.13900 2367 3119 2 chr2B.!!$R3 752
3 TraesCS2D01G339600 chr2B 512501802 512502729 927 True 474.000000 484 89.84000 2367 3119 2 chr2B.!!$R2 752
4 TraesCS2D01G339600 chr2A 553480546 553482386 1840 False 408.050000 715 89.01625 464 2301 4 chr2A.!!$F3 1837
5 TraesCS2D01G339600 chr7A 83765857 83768063 2206 True 236.450000 385 94.52800 2810 3119 2 chr7A.!!$R1 309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 381 0.109597 CAAAGTCCGGTTGCAGATGC 60.11 55.0 0.0 0.0 42.5 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 2729 1.006832 GTGGTGTGTGATGCGGATAC 58.993 55.0 0.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.899239 GGCGACGGGGATCTGCAG 62.899 72.222 7.63 7.63 0.00 4.41
18 19 4.899239 GCGACGGGGATCTGCAGG 62.899 72.222 15.13 0.00 0.00 4.85
20 21 4.899239 GACGGGGATCTGCAGGCG 62.899 72.222 15.13 0.00 0.00 5.52
23 24 4.247380 GGGGATCTGCAGGCGGAG 62.247 72.222 15.13 0.00 34.49 4.63
36 37 3.207669 CGGAGCAGCAGGCCATTC 61.208 66.667 5.01 0.00 46.50 2.67
37 38 2.274760 GGAGCAGCAGGCCATTCT 59.725 61.111 5.01 0.00 46.50 2.40
38 39 1.823041 GGAGCAGCAGGCCATTCTC 60.823 63.158 5.01 3.69 46.50 2.87
39 40 2.124819 AGCAGCAGGCCATTCTCG 60.125 61.111 5.01 0.00 46.50 4.04
40 41 2.124983 GCAGCAGGCCATTCTCGA 60.125 61.111 5.01 0.00 36.11 4.04
41 42 1.525535 GCAGCAGGCCATTCTCGAT 60.526 57.895 5.01 0.00 36.11 3.59
42 43 1.099879 GCAGCAGGCCATTCTCGATT 61.100 55.000 5.01 0.00 36.11 3.34
43 44 0.942962 CAGCAGGCCATTCTCGATTC 59.057 55.000 5.01 0.00 0.00 2.52
45 46 1.169034 GCAGGCCATTCTCGATTCCC 61.169 60.000 5.01 0.00 0.00 3.97
46 47 0.471617 CAGGCCATTCTCGATTCCCT 59.528 55.000 5.01 0.00 0.00 4.20
47 48 0.761802 AGGCCATTCTCGATTCCCTC 59.238 55.000 5.01 0.00 0.00 4.30
49 50 0.601311 GCCATTCTCGATTCCCTCCG 60.601 60.000 0.00 0.00 0.00 4.63
51 52 0.753262 CATTCTCGATTCCCTCCGGT 59.247 55.000 0.00 0.00 0.00 5.28
52 53 1.041437 ATTCTCGATTCCCTCCGGTC 58.959 55.000 0.00 0.00 0.00 4.79
53 54 1.381928 TTCTCGATTCCCTCCGGTCG 61.382 60.000 0.00 1.74 35.55 4.79
54 55 2.831742 TCGATTCCCTCCGGTCGG 60.832 66.667 9.66 2.52 35.01 4.79
55 56 2.831742 CGATTCCCTCCGGTCGGA 60.832 66.667 11.83 11.83 42.90 4.55
81 82 2.811317 CGGAGGCAAGACGCTGTC 60.811 66.667 1.15 1.15 41.91 3.51
82 83 2.343758 GGAGGCAAGACGCTGTCA 59.656 61.111 10.52 0.00 41.91 3.58
83 84 2.029844 GGAGGCAAGACGCTGTCAC 61.030 63.158 10.52 1.31 41.91 3.67
84 85 2.029844 GAGGCAAGACGCTGTCACC 61.030 63.158 10.52 8.60 41.91 4.02
85 86 3.414700 GGCAAGACGCTGTCACCG 61.415 66.667 10.52 0.00 41.91 4.94
86 87 3.414700 GCAAGACGCTGTCACCGG 61.415 66.667 0.00 0.00 37.77 5.28
87 88 3.414700 CAAGACGCTGTCACCGGC 61.415 66.667 0.00 0.00 39.74 6.13
88 89 3.923864 AAGACGCTGTCACCGGCA 61.924 61.111 0.00 0.00 43.56 5.69
89 90 3.454587 AAGACGCTGTCACCGGCAA 62.455 57.895 0.00 0.00 43.56 4.52
90 91 3.414700 GACGCTGTCACCGGCAAG 61.415 66.667 0.00 0.00 43.56 4.01
91 92 3.858868 GACGCTGTCACCGGCAAGA 62.859 63.158 0.00 0.00 43.56 3.02
92 93 3.114616 CGCTGTCACCGGCAAGAG 61.115 66.667 0.00 0.00 43.56 2.85
93 94 2.343758 GCTGTCACCGGCAAGAGA 59.656 61.111 0.00 0.00 42.86 3.10
96 97 0.742281 CTGTCACCGGCAAGAGATGG 60.742 60.000 0.00 0.00 0.00 3.51
97 98 1.191489 TGTCACCGGCAAGAGATGGA 61.191 55.000 0.00 0.00 0.00 3.41
98 99 0.460987 GTCACCGGCAAGAGATGGAG 60.461 60.000 0.00 0.00 0.00 3.86
100 101 0.460987 CACCGGCAAGAGATGGAGAC 60.461 60.000 0.00 0.00 0.00 3.36
101 102 1.227089 CCGGCAAGAGATGGAGACG 60.227 63.158 0.00 0.00 0.00 4.18
102 103 1.880340 CGGCAAGAGATGGAGACGC 60.880 63.158 0.00 0.00 0.00 5.19
103 104 1.219124 GGCAAGAGATGGAGACGCA 59.781 57.895 0.00 0.00 0.00 5.24
104 105 0.391661 GGCAAGAGATGGAGACGCAA 60.392 55.000 0.00 0.00 0.00 4.85
106 107 1.404717 GCAAGAGATGGAGACGCAAGA 60.405 52.381 0.00 0.00 43.62 3.02
107 108 2.932622 GCAAGAGATGGAGACGCAAGAA 60.933 50.000 0.00 0.00 43.62 2.52
108 109 2.928757 CAAGAGATGGAGACGCAAGAAG 59.071 50.000 0.00 0.00 43.62 2.85
109 110 1.134848 AGAGATGGAGACGCAAGAAGC 60.135 52.381 0.00 0.00 43.62 3.86
111 112 1.424493 GATGGAGACGCAAGAAGCCG 61.424 60.000 0.00 0.00 41.38 5.52
112 113 3.491652 GGAGACGCAAGAAGCCGC 61.492 66.667 0.00 0.00 41.38 6.53
118 119 4.760047 GCAAGAAGCCGCGGAGGA 62.760 66.667 33.48 0.00 45.00 3.71
120 121 3.775654 AAGAAGCCGCGGAGGAGG 61.776 66.667 33.48 0.01 45.00 4.30
129 130 2.835431 CGGAGGAGGCGGAGATGT 60.835 66.667 0.00 0.00 0.00 3.06
131 132 1.443828 GGAGGAGGCGGAGATGTTC 59.556 63.158 0.00 0.00 0.00 3.18
132 133 1.066587 GAGGAGGCGGAGATGTTCG 59.933 63.158 0.00 0.00 0.00 3.95
137 138 4.014065 GCGGAGATGTTCGCCTAC 57.986 61.111 3.66 0.00 45.42 3.18
139 140 0.249489 GCGGAGATGTTCGCCTACAT 60.249 55.000 3.66 0.00 45.42 2.29
142 143 1.412710 GGAGATGTTCGCCTACATGGA 59.587 52.381 0.00 0.00 38.80 3.41
145 146 2.700371 AGATGTTCGCCTACATGGATGA 59.300 45.455 0.00 0.00 38.80 2.92
146 147 2.602257 TGTTCGCCTACATGGATGAG 57.398 50.000 0.00 0.00 38.35 2.90
147 148 1.138859 TGTTCGCCTACATGGATGAGG 59.861 52.381 0.00 0.00 38.35 3.86
148 149 1.139058 GTTCGCCTACATGGATGAGGT 59.861 52.381 0.00 0.00 38.35 3.85
149 150 1.040646 TCGCCTACATGGATGAGGTC 58.959 55.000 0.00 0.00 38.35 3.85
150 151 0.752658 CGCCTACATGGATGAGGTCA 59.247 55.000 0.00 0.00 38.35 4.02
151 152 1.138859 CGCCTACATGGATGAGGTCAA 59.861 52.381 0.00 0.00 38.35 3.18
152 153 2.804572 CGCCTACATGGATGAGGTCAAG 60.805 54.545 0.00 0.00 38.35 3.02
153 154 2.843701 CCTACATGGATGAGGTCAAGC 58.156 52.381 0.00 0.00 38.35 4.01
154 155 2.171237 CCTACATGGATGAGGTCAAGCA 59.829 50.000 0.00 0.00 38.35 3.91
155 156 2.414994 ACATGGATGAGGTCAAGCAG 57.585 50.000 0.00 0.00 0.00 4.24
156 157 1.911357 ACATGGATGAGGTCAAGCAGA 59.089 47.619 0.00 0.00 0.00 4.26
157 158 2.306805 ACATGGATGAGGTCAAGCAGAA 59.693 45.455 0.00 0.00 0.00 3.02
159 160 1.280133 TGGATGAGGTCAAGCAGAAGG 59.720 52.381 0.00 0.00 0.00 3.46
160 161 1.556911 GGATGAGGTCAAGCAGAAGGA 59.443 52.381 0.00 0.00 0.00 3.36
161 162 2.419851 GGATGAGGTCAAGCAGAAGGAG 60.420 54.545 0.00 0.00 0.00 3.69
163 164 1.270907 GAGGTCAAGCAGAAGGAGGA 58.729 55.000 0.00 0.00 0.00 3.71
165 166 1.558756 AGGTCAAGCAGAAGGAGGATG 59.441 52.381 0.00 0.00 0.00 3.51
166 167 1.556911 GGTCAAGCAGAAGGAGGATGA 59.443 52.381 0.00 0.00 0.00 2.92
167 168 2.419851 GGTCAAGCAGAAGGAGGATGAG 60.420 54.545 0.00 0.00 0.00 2.90
168 169 1.209019 TCAAGCAGAAGGAGGATGAGC 59.791 52.381 0.00 0.00 0.00 4.26
169 170 0.545646 AAGCAGAAGGAGGATGAGCC 59.454 55.000 0.00 0.00 0.00 4.70
171 172 1.445095 CAGAAGGAGGATGAGCCGG 59.555 63.158 0.00 0.00 43.43 6.13
172 173 1.045350 CAGAAGGAGGATGAGCCGGA 61.045 60.000 5.05 0.00 43.43 5.14
173 174 0.758685 AGAAGGAGGATGAGCCGGAG 60.759 60.000 5.05 0.00 43.43 4.63
174 175 2.376228 GAAGGAGGATGAGCCGGAGC 62.376 65.000 5.05 0.00 43.43 4.70
175 176 3.934962 GGAGGATGAGCCGGAGCC 61.935 72.222 5.05 0.00 43.43 4.70
176 177 3.934962 GAGGATGAGCCGGAGCCC 61.935 72.222 5.05 0.00 43.43 5.19
177 178 4.488911 AGGATGAGCCGGAGCCCT 62.489 66.667 5.05 0.00 43.43 5.19
178 179 3.934962 GGATGAGCCGGAGCCCTC 61.935 72.222 5.05 2.01 41.25 4.30
179 180 3.934962 GATGAGCCGGAGCCCTCC 61.935 72.222 5.05 4.19 46.18 4.30
207 208 4.634133 GCACCGTCGTCGTGGACA 62.634 66.667 12.18 0.00 36.73 4.02
208 209 2.257371 CACCGTCGTCGTGGACAT 59.743 61.111 12.18 0.00 36.73 3.06
211 212 1.211969 CCGTCGTCGTGGACATCTT 59.788 57.895 0.71 0.00 36.73 2.40
213 214 0.109919 CGTCGTCGTGGACATCTTCA 60.110 55.000 8.79 0.00 36.73 3.02
214 215 1.664874 CGTCGTCGTGGACATCTTCAA 60.665 52.381 8.79 0.00 36.73 2.69
215 216 1.719780 GTCGTCGTGGACATCTTCAAC 59.280 52.381 0.00 0.00 36.91 3.18
220 221 2.060326 GTGGACATCTTCAACGACGA 57.940 50.000 0.00 0.00 0.00 4.20
221 222 1.986378 GTGGACATCTTCAACGACGAG 59.014 52.381 0.00 0.00 0.00 4.18
222 223 1.067846 TGGACATCTTCAACGACGAGG 60.068 52.381 0.00 0.00 0.00 4.63
223 224 1.201647 GGACATCTTCAACGACGAGGA 59.798 52.381 0.00 0.00 0.00 3.71
224 225 2.159226 GGACATCTTCAACGACGAGGAT 60.159 50.000 0.00 0.00 32.35 3.24
225 226 3.066342 GGACATCTTCAACGACGAGGATA 59.934 47.826 0.00 0.00 31.12 2.59
226 227 4.283678 GACATCTTCAACGACGAGGATAG 58.716 47.826 0.00 0.16 31.12 2.08
227 228 2.846039 TCTTCAACGACGAGGATAGC 57.154 50.000 0.00 0.00 0.00 2.97
228 229 2.366533 TCTTCAACGACGAGGATAGCT 58.633 47.619 0.00 0.00 0.00 3.32
229 230 2.097629 TCTTCAACGACGAGGATAGCTG 59.902 50.000 0.00 0.00 0.00 4.24
230 231 0.738975 TCAACGACGAGGATAGCTGG 59.261 55.000 0.00 0.00 0.00 4.85
231 232 0.249073 CAACGACGAGGATAGCTGGG 60.249 60.000 0.00 0.00 0.00 4.45
232 233 1.392710 AACGACGAGGATAGCTGGGG 61.393 60.000 0.00 0.00 0.00 4.96
233 234 1.828660 CGACGAGGATAGCTGGGGT 60.829 63.158 0.00 0.00 0.00 4.95
234 235 0.536687 CGACGAGGATAGCTGGGGTA 60.537 60.000 0.00 0.00 0.00 3.69
237 238 1.779092 ACGAGGATAGCTGGGGTAGTA 59.221 52.381 0.00 0.00 0.00 1.82
238 239 2.379226 ACGAGGATAGCTGGGGTAGTAT 59.621 50.000 0.00 0.00 0.00 2.12
239 240 2.755655 CGAGGATAGCTGGGGTAGTATG 59.244 54.545 0.00 0.00 0.00 2.39
240 241 3.780626 GAGGATAGCTGGGGTAGTATGT 58.219 50.000 0.00 0.00 0.00 2.29
241 242 4.567116 CGAGGATAGCTGGGGTAGTATGTA 60.567 50.000 0.00 0.00 0.00 2.29
242 243 5.331069 GAGGATAGCTGGGGTAGTATGTAA 58.669 45.833 0.00 0.00 0.00 2.41
243 244 5.334421 AGGATAGCTGGGGTAGTATGTAAG 58.666 45.833 0.00 0.00 0.00 2.34
244 245 5.076039 AGGATAGCTGGGGTAGTATGTAAGA 59.924 44.000 0.00 0.00 0.00 2.10
247 248 7.038231 GGATAGCTGGGGTAGTATGTAAGATTT 60.038 40.741 0.00 0.00 0.00 2.17
251 252 6.602009 GCTGGGGTAGTATGTAAGATTTGTTT 59.398 38.462 0.00 0.00 0.00 2.83
255 256 7.094118 GGGGTAGTATGTAAGATTTGTTTTGCA 60.094 37.037 0.00 0.00 0.00 4.08
256 257 8.466798 GGGTAGTATGTAAGATTTGTTTTGCAT 58.533 33.333 0.00 0.00 34.66 3.96
258 259 7.816945 AGTATGTAAGATTTGTTTTGCATGC 57.183 32.000 11.82 11.82 34.19 4.06
260 261 8.090214 AGTATGTAAGATTTGTTTTGCATGCTT 58.910 29.630 20.33 2.93 38.45 3.91
261 262 7.733402 ATGTAAGATTTGTTTTGCATGCTTT 57.267 28.000 20.33 0.97 30.14 3.51
262 263 6.946165 TGTAAGATTTGTTTTGCATGCTTTG 58.054 32.000 20.33 0.00 0.00 2.77
263 264 6.538021 TGTAAGATTTGTTTTGCATGCTTTGT 59.462 30.769 20.33 0.00 0.00 2.83
264 265 7.708322 TGTAAGATTTGTTTTGCATGCTTTGTA 59.292 29.630 20.33 0.00 0.00 2.41
265 266 7.733402 AAGATTTGTTTTGCATGCTTTGTAT 57.267 28.000 20.33 3.79 0.00 2.29
266 267 7.124347 AGATTTGTTTTGCATGCTTTGTATG 57.876 32.000 20.33 0.00 0.00 2.39
267 268 5.670149 TTTGTTTTGCATGCTTTGTATGG 57.330 34.783 20.33 0.00 0.00 2.74
268 269 4.597404 TGTTTTGCATGCTTTGTATGGA 57.403 36.364 20.33 0.00 0.00 3.41
269 270 5.149973 TGTTTTGCATGCTTTGTATGGAT 57.850 34.783 20.33 0.00 0.00 3.41
270 271 5.170021 TGTTTTGCATGCTTTGTATGGATC 58.830 37.500 20.33 0.00 0.00 3.36
271 272 5.047164 TGTTTTGCATGCTTTGTATGGATCT 60.047 36.000 20.33 0.00 0.00 2.75
272 273 6.152492 TGTTTTGCATGCTTTGTATGGATCTA 59.848 34.615 20.33 0.00 0.00 1.98
273 274 6.381481 TTTGCATGCTTTGTATGGATCTAG 57.619 37.500 20.33 0.00 0.00 2.43
274 275 4.392047 TGCATGCTTTGTATGGATCTAGG 58.608 43.478 20.33 0.00 0.00 3.02
276 277 4.330250 CATGCTTTGTATGGATCTAGGGG 58.670 47.826 0.00 0.00 0.00 4.79
277 278 3.664320 TGCTTTGTATGGATCTAGGGGA 58.336 45.455 0.00 0.00 0.00 4.81
278 279 4.242811 TGCTTTGTATGGATCTAGGGGAT 58.757 43.478 0.00 0.00 37.37 3.85
280 281 4.287067 GCTTTGTATGGATCTAGGGGATGA 59.713 45.833 0.00 0.00 34.33 2.92
281 282 5.221925 GCTTTGTATGGATCTAGGGGATGAA 60.222 44.000 0.00 0.00 34.33 2.57
283 284 7.406620 TTTGTATGGATCTAGGGGATGAAAT 57.593 36.000 0.00 0.00 34.33 2.17
284 285 8.518720 TTTGTATGGATCTAGGGGATGAAATA 57.481 34.615 0.00 0.00 34.33 1.40
285 286 8.700145 TTGTATGGATCTAGGGGATGAAATAT 57.300 34.615 0.00 0.00 34.33 1.28
286 287 8.094284 TGTATGGATCTAGGGGATGAAATATG 57.906 38.462 0.00 0.00 34.33 1.78
287 288 7.906192 TGTATGGATCTAGGGGATGAAATATGA 59.094 37.037 0.00 0.00 34.33 2.15
288 289 6.881067 TGGATCTAGGGGATGAAATATGAG 57.119 41.667 0.00 0.00 34.33 2.90
289 290 6.574463 TGGATCTAGGGGATGAAATATGAGA 58.426 40.000 0.00 0.00 34.33 3.27
290 291 6.671340 TGGATCTAGGGGATGAAATATGAGAG 59.329 42.308 0.00 0.00 34.33 3.20
291 292 6.900186 GGATCTAGGGGATGAAATATGAGAGA 59.100 42.308 0.00 0.00 34.33 3.10
292 293 7.069826 GGATCTAGGGGATGAAATATGAGAGAG 59.930 44.444 0.00 0.00 34.33 3.20
293 294 6.259893 TCTAGGGGATGAAATATGAGAGAGG 58.740 44.000 0.00 0.00 0.00 3.69
294 295 3.586618 AGGGGATGAAATATGAGAGAGGC 59.413 47.826 0.00 0.00 0.00 4.70
295 296 3.594134 GGGATGAAATATGAGAGAGGCG 58.406 50.000 0.00 0.00 0.00 5.52
298 299 4.081198 GGATGAAATATGAGAGAGGCGGAT 60.081 45.833 0.00 0.00 0.00 4.18
299 300 4.263018 TGAAATATGAGAGAGGCGGATG 57.737 45.455 0.00 0.00 0.00 3.51
300 301 2.758736 AATATGAGAGAGGCGGATGC 57.241 50.000 0.00 0.00 41.71 3.91
301 302 1.637338 ATATGAGAGAGGCGGATGCA 58.363 50.000 0.00 0.00 45.35 3.96
302 303 0.964700 TATGAGAGAGGCGGATGCAG 59.035 55.000 0.00 0.00 45.35 4.41
303 304 0.758310 ATGAGAGAGGCGGATGCAGA 60.758 55.000 0.00 0.00 45.35 4.26
304 305 0.972471 TGAGAGAGGCGGATGCAGAA 60.972 55.000 0.00 0.00 45.35 3.02
305 306 0.392336 GAGAGAGGCGGATGCAGAAT 59.608 55.000 0.00 0.00 45.35 2.40
308 309 2.517875 AGGCGGATGCAGAATGGC 60.518 61.111 0.00 0.00 45.35 4.40
309 310 2.517875 GGCGGATGCAGAATGGCT 60.518 61.111 0.00 0.00 45.35 4.75
310 311 1.227943 GGCGGATGCAGAATGGCTA 60.228 57.895 0.00 0.00 45.35 3.93
311 312 0.819259 GGCGGATGCAGAATGGCTAA 60.819 55.000 0.00 0.00 45.35 3.09
313 314 1.610522 GCGGATGCAGAATGGCTAATT 59.389 47.619 0.00 0.00 42.15 1.40
315 316 3.635331 CGGATGCAGAATGGCTAATTTG 58.365 45.455 0.00 0.00 35.86 2.32
316 317 3.316029 CGGATGCAGAATGGCTAATTTGA 59.684 43.478 0.00 0.00 35.86 2.69
317 318 4.556104 CGGATGCAGAATGGCTAATTTGAG 60.556 45.833 0.00 0.00 35.86 3.02
318 319 4.581824 GGATGCAGAATGGCTAATTTGAGA 59.418 41.667 0.00 0.00 35.86 3.27
320 321 3.374988 TGCAGAATGGCTAATTTGAGACG 59.625 43.478 0.00 0.00 35.86 4.18
322 323 4.728882 GCAGAATGGCTAATTTGAGACGTG 60.729 45.833 0.00 0.00 35.86 4.49
324 325 4.631813 AGAATGGCTAATTTGAGACGTGTC 59.368 41.667 5.61 5.61 0.00 3.67
325 326 2.695359 TGGCTAATTTGAGACGTGTCC 58.305 47.619 10.56 0.00 0.00 4.02
327 328 2.602878 GCTAATTTGAGACGTGTCCGA 58.397 47.619 10.56 0.00 37.88 4.55
328 329 3.187700 GCTAATTTGAGACGTGTCCGAT 58.812 45.455 10.56 1.26 37.88 4.18
329 330 3.243177 GCTAATTTGAGACGTGTCCGATC 59.757 47.826 10.56 0.00 37.88 3.69
330 331 3.313012 AATTTGAGACGTGTCCGATCA 57.687 42.857 10.56 0.00 37.88 2.92
332 333 1.244816 TTGAGACGTGTCCGATCAGT 58.755 50.000 10.56 0.00 35.75 3.41
335 336 1.805945 GACGTGTCCGATCAGTGCC 60.806 63.158 0.00 0.00 37.88 5.01
336 337 2.509336 CGTGTCCGATCAGTGCCC 60.509 66.667 0.00 0.00 35.63 5.36
337 338 2.509336 GTGTCCGATCAGTGCCCG 60.509 66.667 0.00 0.00 0.00 6.13
338 339 4.451150 TGTCCGATCAGTGCCCGC 62.451 66.667 0.00 0.00 0.00 6.13
357 358 4.941309 GACGTTTGTGGGCCGGGT 62.941 66.667 2.18 0.00 0.00 5.28
358 359 4.509580 ACGTTTGTGGGCCGGGTT 62.510 61.111 2.18 0.00 0.00 4.11
360 361 2.419620 GTTTGTGGGCCGGGTTTG 59.580 61.111 2.18 0.00 0.00 2.93
361 362 3.541713 TTTGTGGGCCGGGTTTGC 61.542 61.111 2.18 0.00 0.00 3.68
362 363 4.841617 TTGTGGGCCGGGTTTGCA 62.842 61.111 2.18 0.00 0.00 4.08
363 364 4.841617 TGTGGGCCGGGTTTGCAA 62.842 61.111 2.18 0.00 0.00 4.08
367 368 2.338620 GGCCGGGTTTGCAAAGTC 59.661 61.111 13.26 7.99 0.00 3.01
368 369 2.338620 GCCGGGTTTGCAAAGTCC 59.661 61.111 13.26 15.74 0.00 3.85
371 372 2.190841 CGGGTTTGCAAAGTCCGGT 61.191 57.895 30.80 0.00 34.39 5.28
373 374 0.249280 GGGTTTGCAAAGTCCGGTTG 60.249 55.000 13.26 0.00 0.00 3.77
380 381 0.109597 CAAAGTCCGGTTGCAGATGC 60.110 55.000 0.00 0.00 42.50 3.91
382 383 0.674895 AAGTCCGGTTGCAGATGCTC 60.675 55.000 0.00 0.00 42.66 4.26
383 384 1.078848 GTCCGGTTGCAGATGCTCT 60.079 57.895 0.00 0.00 42.66 4.09
384 385 0.175760 GTCCGGTTGCAGATGCTCTA 59.824 55.000 0.00 0.00 42.66 2.43
386 387 1.134699 TCCGGTTGCAGATGCTCTAAG 60.135 52.381 0.00 0.00 42.66 2.18
387 388 1.293924 CGGTTGCAGATGCTCTAAGG 58.706 55.000 6.35 0.00 42.66 2.69
388 389 1.134699 CGGTTGCAGATGCTCTAAGGA 60.135 52.381 6.35 0.00 42.66 3.36
389 390 2.677902 CGGTTGCAGATGCTCTAAGGAA 60.678 50.000 6.35 0.00 42.66 3.36
391 392 3.314635 GGTTGCAGATGCTCTAAGGAATG 59.685 47.826 6.35 0.00 42.66 2.67
392 393 3.920231 TGCAGATGCTCTAAGGAATGT 57.080 42.857 6.35 0.00 42.66 2.71
393 394 3.538591 TGCAGATGCTCTAAGGAATGTG 58.461 45.455 6.35 0.00 42.66 3.21
396 397 4.820716 GCAGATGCTCTAAGGAATGTGATT 59.179 41.667 0.00 0.00 38.21 2.57
397 398 5.298777 GCAGATGCTCTAAGGAATGTGATTT 59.701 40.000 0.00 0.00 38.21 2.17
398 399 6.513066 GCAGATGCTCTAAGGAATGTGATTTC 60.513 42.308 0.00 0.00 38.21 2.17
400 401 7.228906 CAGATGCTCTAAGGAATGTGATTTCAT 59.771 37.037 0.00 0.00 0.00 2.57
401 402 6.932356 TGCTCTAAGGAATGTGATTTCATC 57.068 37.500 0.00 0.00 0.00 2.92
402 403 6.656902 TGCTCTAAGGAATGTGATTTCATCT 58.343 36.000 0.00 0.00 0.00 2.90
403 404 6.765036 TGCTCTAAGGAATGTGATTTCATCTC 59.235 38.462 0.00 0.00 0.00 2.75
404 405 6.991531 GCTCTAAGGAATGTGATTTCATCTCT 59.008 38.462 0.00 0.00 0.00 3.10
405 406 7.171337 GCTCTAAGGAATGTGATTTCATCTCTC 59.829 40.741 0.00 0.00 0.00 3.20
406 407 8.316497 TCTAAGGAATGTGATTTCATCTCTCT 57.684 34.615 0.00 0.00 0.00 3.10
407 408 9.426534 TCTAAGGAATGTGATTTCATCTCTCTA 57.573 33.333 0.00 0.00 0.00 2.43
409 410 8.961294 AAGGAATGTGATTTCATCTCTCTAAG 57.039 34.615 0.00 0.00 0.00 2.18
410 411 6.991531 AGGAATGTGATTTCATCTCTCTAAGC 59.008 38.462 0.00 0.00 0.00 3.09
411 412 6.765036 GGAATGTGATTTCATCTCTCTAAGCA 59.235 38.462 0.00 0.00 0.00 3.91
412 413 7.254727 GGAATGTGATTTCATCTCTCTAAGCAC 60.255 40.741 0.00 0.00 37.40 4.40
413 414 6.041423 TGTGATTTCATCTCTCTAAGCACA 57.959 37.500 0.00 0.00 42.47 4.57
415 416 6.537660 TGTGATTTCATCTCTCTAAGCACATG 59.462 38.462 0.00 0.00 40.62 3.21
416 417 6.760298 GTGATTTCATCTCTCTAAGCACATGA 59.240 38.462 0.00 0.00 37.00 3.07
417 418 7.441760 GTGATTTCATCTCTCTAAGCACATGAT 59.558 37.037 0.00 0.00 37.00 2.45
418 419 8.645110 TGATTTCATCTCTCTAAGCACATGATA 58.355 33.333 0.00 0.00 0.00 2.15
419 420 9.656040 GATTTCATCTCTCTAAGCACATGATAT 57.344 33.333 0.00 0.00 0.00 1.63
421 422 7.167924 TCATCTCTCTAAGCACATGATATCC 57.832 40.000 0.00 0.00 0.00 2.59
422 423 6.723052 TCATCTCTCTAAGCACATGATATCCA 59.277 38.462 0.00 0.00 0.00 3.41
424 425 7.550597 TCTCTCTAAGCACATGATATCCAAT 57.449 36.000 0.00 0.00 0.00 3.16
425 426 7.384477 TCTCTCTAAGCACATGATATCCAATG 58.616 38.462 0.00 0.91 0.00 2.82
426 427 6.470278 TCTCTAAGCACATGATATCCAATGG 58.530 40.000 0.00 0.00 0.00 3.16
427 428 6.270695 TCTCTAAGCACATGATATCCAATGGA 59.729 38.462 3.67 3.67 35.55 3.41
428 429 6.233434 TCTAAGCACATGATATCCAATGGAC 58.767 40.000 3.09 0.00 32.98 4.02
429 430 4.442401 AGCACATGATATCCAATGGACA 57.558 40.909 3.09 0.00 32.98 4.02
430 431 4.994282 AGCACATGATATCCAATGGACAT 58.006 39.130 3.09 0.00 32.98 3.06
431 432 4.765339 AGCACATGATATCCAATGGACATG 59.235 41.667 22.26 22.26 38.70 3.21
432 433 4.521639 GCACATGATATCCAATGGACATGT 59.478 41.667 23.27 23.27 43.18 3.21
434 435 5.766174 CACATGATATCCAATGGACATGTCA 59.234 40.000 25.06 16.18 41.66 3.58
438 439 7.557875 TGATATCCAATGGACATGTCAGATA 57.442 36.000 26.47 20.63 32.98 1.98
439 440 7.976712 TGATATCCAATGGACATGTCAGATAA 58.023 34.615 26.47 8.17 32.98 1.75
440 441 8.098912 TGATATCCAATGGACATGTCAGATAAG 58.901 37.037 26.47 13.13 32.98 1.73
441 442 5.955961 TCCAATGGACATGTCAGATAAGA 57.044 39.130 26.47 12.79 0.00 2.10
443 444 6.293698 TCCAATGGACATGTCAGATAAGATG 58.706 40.000 26.47 12.17 0.00 2.90
445 446 4.694760 TGGACATGTCAGATAAGATGGG 57.305 45.455 26.47 0.00 0.00 4.00
446 447 3.181451 TGGACATGTCAGATAAGATGGGC 60.181 47.826 26.47 5.65 0.00 5.36
447 448 3.181451 GGACATGTCAGATAAGATGGGCA 60.181 47.826 26.47 0.00 0.00 5.36
449 450 4.202441 ACATGTCAGATAAGATGGGCAAC 58.798 43.478 0.00 0.00 0.00 4.17
450 451 4.080129 ACATGTCAGATAAGATGGGCAACT 60.080 41.667 0.00 0.00 0.00 3.16
452 453 4.264253 TGTCAGATAAGATGGGCAACTTG 58.736 43.478 0.00 0.00 0.00 3.16
453 454 3.629398 GTCAGATAAGATGGGCAACTTGG 59.371 47.826 0.00 0.00 0.00 3.61
454 455 3.266772 TCAGATAAGATGGGCAACTTGGT 59.733 43.478 0.00 0.00 0.00 3.67
456 457 4.576463 CAGATAAGATGGGCAACTTGGTAC 59.424 45.833 0.00 0.00 0.00 3.34
495 496 7.386848 CAGCATTTCTCATTCAATTGGAGTTTT 59.613 33.333 5.42 0.00 0.00 2.43
496 497 8.587608 AGCATTTCTCATTCAATTGGAGTTTTA 58.412 29.630 5.42 0.00 0.00 1.52
503 504 7.666623 TCATTCAATTGGAGTTTTACTTTCCC 58.333 34.615 5.42 0.00 0.00 3.97
504 505 7.508977 TCATTCAATTGGAGTTTTACTTTCCCT 59.491 33.333 5.42 0.00 0.00 4.20
506 507 6.610830 TCAATTGGAGTTTTACTTTCCCTCT 58.389 36.000 5.42 0.00 0.00 3.69
508 509 7.563556 TCAATTGGAGTTTTACTTTCCCTCTTT 59.436 33.333 5.42 0.00 0.00 2.52
511 512 6.610830 TGGAGTTTTACTTTCCCTCTTTGAT 58.389 36.000 0.00 0.00 0.00 2.57
512 513 6.715264 TGGAGTTTTACTTTCCCTCTTTGATC 59.285 38.462 0.00 0.00 0.00 2.92
513 514 6.943146 GGAGTTTTACTTTCCCTCTTTGATCT 59.057 38.462 0.00 0.00 0.00 2.75
514 515 7.448777 GGAGTTTTACTTTCCCTCTTTGATCTT 59.551 37.037 0.00 0.00 0.00 2.40
515 516 8.768501 AGTTTTACTTTCCCTCTTTGATCTTT 57.231 30.769 0.00 0.00 0.00 2.52
516 517 9.201989 AGTTTTACTTTCCCTCTTTGATCTTTT 57.798 29.630 0.00 0.00 0.00 2.27
517 518 9.817809 GTTTTACTTTCCCTCTTTGATCTTTTT 57.182 29.630 0.00 0.00 0.00 1.94
519 520 6.410942 ACTTTCCCTCTTTGATCTTTTTGG 57.589 37.500 0.00 0.00 0.00 3.28
520 521 4.871933 TTCCCTCTTTGATCTTTTTGGC 57.128 40.909 0.00 0.00 0.00 4.52
522 523 3.828451 TCCCTCTTTGATCTTTTTGGCAG 59.172 43.478 0.00 0.00 0.00 4.85
523 524 3.828451 CCCTCTTTGATCTTTTTGGCAGA 59.172 43.478 0.00 0.00 0.00 4.26
524 525 4.082354 CCCTCTTTGATCTTTTTGGCAGAG 60.082 45.833 0.00 0.00 0.00 3.35
525 526 4.763793 CCTCTTTGATCTTTTTGGCAGAGA 59.236 41.667 0.00 0.00 30.03 3.10
526 527 5.418209 CCTCTTTGATCTTTTTGGCAGAGAT 59.582 40.000 9.07 9.07 33.05 2.75
527 528 6.071503 CCTCTTTGATCTTTTTGGCAGAGATT 60.072 38.462 10.22 0.00 30.64 2.40
531 532 5.563592 TGATCTTTTTGGCAGAGATTCTCA 58.436 37.500 15.83 4.37 32.06 3.27
539 540 3.782523 TGGCAGAGATTCTCACCCTTATT 59.217 43.478 15.83 0.00 32.06 1.40
549 550 5.528600 TCTCACCCTTATTTTCATTCCCA 57.471 39.130 0.00 0.00 0.00 4.37
556 557 4.022849 CCTTATTTTCATTCCCATCGAGCC 60.023 45.833 0.00 0.00 0.00 4.70
557 558 2.505650 TTTTCATTCCCATCGAGCCA 57.494 45.000 0.00 0.00 0.00 4.75
575 583 0.110238 CAAAGCATGTTCACGACCCG 60.110 55.000 0.00 0.00 0.00 5.28
580 588 1.355971 CATGTTCACGACCCGGTAAG 58.644 55.000 0.00 0.00 0.00 2.34
581 589 0.248289 ATGTTCACGACCCGGTAAGG 59.752 55.000 0.00 0.00 40.63 2.69
583 591 2.946346 TTCACGACCCGGTAAGGCC 61.946 63.158 0.00 0.00 39.21 5.19
585 593 2.605601 ACGACCCGGTAAGGCCTT 60.606 61.111 24.18 24.18 39.21 4.35
588 596 1.377612 GACCCGGTAAGGCCTTGTT 59.622 57.895 28.77 4.09 39.21 2.83
590 598 1.377229 CCCGGTAAGGCCTTGTTCA 59.623 57.895 28.77 4.66 39.21 3.18
593 601 1.544759 CCGGTAAGGCCTTGTTCAGTT 60.545 52.381 28.77 0.57 34.25 3.16
594 602 2.289819 CCGGTAAGGCCTTGTTCAGTTA 60.290 50.000 28.77 1.62 34.25 2.24
595 603 3.000727 CGGTAAGGCCTTGTTCAGTTAG 58.999 50.000 28.77 5.12 34.25 2.34
601 609 1.826385 CCTTGTTCAGTTAGGCAGGG 58.174 55.000 0.00 0.00 0.00 4.45
602 610 1.351017 CCTTGTTCAGTTAGGCAGGGA 59.649 52.381 0.00 0.00 30.80 4.20
603 611 2.224769 CCTTGTTCAGTTAGGCAGGGAA 60.225 50.000 0.00 0.00 30.80 3.97
605 613 3.071874 TGTTCAGTTAGGCAGGGAATG 57.928 47.619 0.00 0.00 0.00 2.67
607 615 1.965414 TCAGTTAGGCAGGGAATGGA 58.035 50.000 0.00 0.00 0.00 3.41
608 616 1.839994 TCAGTTAGGCAGGGAATGGAG 59.160 52.381 0.00 0.00 0.00 3.86
609 617 1.839994 CAGTTAGGCAGGGAATGGAGA 59.160 52.381 0.00 0.00 0.00 3.71
610 618 2.122768 AGTTAGGCAGGGAATGGAGAG 58.877 52.381 0.00 0.00 0.00 3.20
611 619 1.141858 GTTAGGCAGGGAATGGAGAGG 59.858 57.143 0.00 0.00 0.00 3.69
612 620 0.343372 TAGGCAGGGAATGGAGAGGT 59.657 55.000 0.00 0.00 0.00 3.85
614 622 0.332972 GGCAGGGAATGGAGAGGTTT 59.667 55.000 0.00 0.00 0.00 3.27
615 623 1.467920 GCAGGGAATGGAGAGGTTTG 58.532 55.000 0.00 0.00 0.00 2.93
616 624 1.004745 GCAGGGAATGGAGAGGTTTGA 59.995 52.381 0.00 0.00 0.00 2.69
617 625 2.555227 GCAGGGAATGGAGAGGTTTGAA 60.555 50.000 0.00 0.00 0.00 2.69
618 626 3.766545 CAGGGAATGGAGAGGTTTGAAA 58.233 45.455 0.00 0.00 0.00 2.69
619 627 4.151883 CAGGGAATGGAGAGGTTTGAAAA 58.848 43.478 0.00 0.00 0.00 2.29
620 628 4.219288 CAGGGAATGGAGAGGTTTGAAAAG 59.781 45.833 0.00 0.00 0.00 2.27
621 629 3.511540 GGGAATGGAGAGGTTTGAAAAGG 59.488 47.826 0.00 0.00 0.00 3.11
622 630 4.407365 GGAATGGAGAGGTTTGAAAAGGA 58.593 43.478 0.00 0.00 0.00 3.36
624 632 5.481824 GGAATGGAGAGGTTTGAAAAGGATT 59.518 40.000 0.00 0.00 0.00 3.01
625 633 6.350528 GGAATGGAGAGGTTTGAAAAGGATTC 60.351 42.308 0.00 0.00 0.00 2.52
626 634 5.060427 TGGAGAGGTTTGAAAAGGATTCA 57.940 39.130 0.00 0.00 0.00 2.57
627 635 5.454062 TGGAGAGGTTTGAAAAGGATTCAA 58.546 37.500 0.00 0.00 36.71 2.69
628 636 5.896678 TGGAGAGGTTTGAAAAGGATTCAAA 59.103 36.000 11.21 11.21 43.62 2.69
635 643 4.335400 TGAAAAGGATTCAAACCCTTGC 57.665 40.909 0.00 0.00 41.61 4.01
636 644 3.708631 TGAAAAGGATTCAAACCCTTGCA 59.291 39.130 0.00 0.00 41.61 4.08
637 645 4.163078 TGAAAAGGATTCAAACCCTTGCAA 59.837 37.500 0.00 0.00 41.61 4.08
638 646 4.341366 AAAGGATTCAAACCCTTGCAAG 57.659 40.909 19.93 19.93 41.61 4.01
639 647 2.962859 AGGATTCAAACCCTTGCAAGT 58.037 42.857 24.35 5.56 32.14 3.16
640 648 2.893489 AGGATTCAAACCCTTGCAAGTC 59.107 45.455 24.35 12.49 32.14 3.01
641 649 2.627699 GGATTCAAACCCTTGCAAGTCA 59.372 45.455 24.35 1.31 32.14 3.41
642 650 3.069443 GGATTCAAACCCTTGCAAGTCAA 59.931 43.478 24.35 8.25 32.14 3.18
643 651 4.442753 GGATTCAAACCCTTGCAAGTCAAA 60.443 41.667 24.35 10.27 33.65 2.69
645 653 4.751767 TCAAACCCTTGCAAGTCAAAAT 57.248 36.364 24.35 3.55 33.65 1.82
646 654 5.096443 TCAAACCCTTGCAAGTCAAAATT 57.904 34.783 24.35 8.22 33.65 1.82
647 655 5.495640 TCAAACCCTTGCAAGTCAAAATTT 58.504 33.333 24.35 11.94 33.65 1.82
649 657 4.071961 ACCCTTGCAAGTCAAAATTTCC 57.928 40.909 24.35 0.00 33.65 3.13
651 659 3.071457 CCCTTGCAAGTCAAAATTTCCCT 59.929 43.478 24.35 0.00 33.65 4.20
653 661 5.221621 CCCTTGCAAGTCAAAATTTCCCTAA 60.222 40.000 24.35 0.00 33.65 2.69
655 663 6.765512 CCTTGCAAGTCAAAATTTCCCTAAAA 59.234 34.615 24.35 0.00 33.65 1.52
656 664 7.254761 CCTTGCAAGTCAAAATTTCCCTAAAAC 60.255 37.037 24.35 0.00 33.65 2.43
659 667 6.423905 GCAAGTCAAAATTTCCCTAAAACCTC 59.576 38.462 0.00 0.00 0.00 3.85
661 669 5.542635 AGTCAAAATTTCCCTAAAACCTCCC 59.457 40.000 0.00 0.00 0.00 4.30
662 670 4.841813 TCAAAATTTCCCTAAAACCTCCCC 59.158 41.667 0.00 0.00 0.00 4.81
663 671 2.820728 ATTTCCCTAAAACCTCCCCG 57.179 50.000 0.00 0.00 0.00 5.73
665 673 1.975471 TTCCCTAAAACCTCCCCGAT 58.025 50.000 0.00 0.00 0.00 4.18
666 674 1.503800 TCCCTAAAACCTCCCCGATC 58.496 55.000 0.00 0.00 0.00 3.69
667 675 0.472898 CCCTAAAACCTCCCCGATCC 59.527 60.000 0.00 0.00 0.00 3.36
668 676 0.472898 CCTAAAACCTCCCCGATCCC 59.527 60.000 0.00 0.00 0.00 3.85
669 677 0.472898 CTAAAACCTCCCCGATCCCC 59.527 60.000 0.00 0.00 0.00 4.81
672 680 1.279749 AAACCTCCCCGATCCCCTTC 61.280 60.000 0.00 0.00 0.00 3.46
673 681 2.040884 CCTCCCCGATCCCCTTCA 60.041 66.667 0.00 0.00 0.00 3.02
675 683 1.062488 CCTCCCCGATCCCCTTCAAT 61.062 60.000 0.00 0.00 0.00 2.57
677 685 1.060163 TCCCCGATCCCCTTCAATCC 61.060 60.000 0.00 0.00 0.00 3.01
679 687 1.062488 CCCGATCCCCTTCAATCCCT 61.062 60.000 0.00 0.00 0.00 4.20
681 689 2.269940 CCGATCCCCTTCAATCCCTAT 58.730 52.381 0.00 0.00 0.00 2.57
682 690 2.026822 CCGATCCCCTTCAATCCCTATG 60.027 54.545 0.00 0.00 0.00 2.23
686 694 2.135189 CCCCTTCAATCCCTATGGTGA 58.865 52.381 0.00 0.00 0.00 4.02
687 695 2.107204 CCCCTTCAATCCCTATGGTGAG 59.893 54.545 0.00 0.00 0.00 3.51
688 696 2.107204 CCCTTCAATCCCTATGGTGAGG 59.893 54.545 0.00 0.00 36.23 3.86
697 705 3.790089 CCTATGGTGAGGGGATTAACC 57.210 52.381 0.00 0.00 32.39 2.85
698 706 2.038557 CCTATGGTGAGGGGATTAACCG 59.961 54.545 0.00 0.00 40.11 4.44
699 707 1.887797 ATGGTGAGGGGATTAACCGA 58.112 50.000 0.00 0.00 40.11 4.69
701 709 1.279846 TGGTGAGGGGATTAACCGAAC 59.720 52.381 0.00 0.00 40.11 3.95
704 712 2.943033 GTGAGGGGATTAACCGAACATG 59.057 50.000 0.00 0.00 40.11 3.21
705 713 2.092646 TGAGGGGATTAACCGAACATGG 60.093 50.000 0.00 0.00 40.11 3.66
707 715 1.029681 GGGATTAACCGAACATGGCC 58.970 55.000 0.00 0.00 40.11 5.36
709 717 2.158726 GGGATTAACCGAACATGGCCTA 60.159 50.000 3.32 0.00 40.11 3.93
710 718 3.547746 GGATTAACCGAACATGGCCTAA 58.452 45.455 3.32 0.00 0.00 2.69
711 719 3.949113 GGATTAACCGAACATGGCCTAAA 59.051 43.478 3.32 0.00 0.00 1.85
715 723 1.271926 ACCGAACATGGCCTAAAGCTT 60.272 47.619 3.32 0.00 43.05 3.74
716 724 1.818674 CCGAACATGGCCTAAAGCTTT 59.181 47.619 17.30 17.30 43.05 3.51
717 725 3.013921 CCGAACATGGCCTAAAGCTTTA 58.986 45.455 17.71 17.71 43.05 1.85
718 726 3.442273 CCGAACATGGCCTAAAGCTTTAA 59.558 43.478 19.10 5.64 43.05 1.52
745 753 3.410631 TGACCTGAAATTACGAAGCCA 57.589 42.857 0.00 0.00 0.00 4.75
786 794 2.202703 CGGTCGGAATCGTGGACC 60.203 66.667 6.67 6.67 45.34 4.46
809 831 2.736682 CGAACCACGGATTCGCACC 61.737 63.158 0.00 0.00 42.11 5.01
815 837 3.794270 CGGATTCGCACCGTTCAT 58.206 55.556 0.00 0.00 44.57 2.57
816 838 2.086510 CGGATTCGCACCGTTCATT 58.913 52.632 0.00 0.00 44.57 2.57
819 841 1.529010 GGATTCGCACCGTTCATTTCG 60.529 52.381 0.00 0.00 0.00 3.46
820 842 0.179200 ATTCGCACCGTTCATTTCGC 60.179 50.000 0.00 0.00 0.00 4.70
865 887 0.619255 TTCTCACCGCCCCCTGATAA 60.619 55.000 0.00 0.00 0.00 1.75
871 893 1.376466 CGCCCCCTGATAATCCCTG 59.624 63.158 0.00 0.00 0.00 4.45
886 908 1.760029 TCCCTGCCCTGAAAACAAAAC 59.240 47.619 0.00 0.00 0.00 2.43
952 995 1.078637 GCCCGTCCCCTCTAACAAC 60.079 63.158 0.00 0.00 0.00 3.32
998 1041 2.978010 CTCCACCACGGGCAACAC 60.978 66.667 0.00 0.00 39.74 3.32
999 1042 4.572571 TCCACCACGGGCAACACC 62.573 66.667 0.00 0.00 39.74 4.16
1437 1523 1.336440 CGGTGTTGCAAGGTTCAATGA 59.664 47.619 0.00 0.00 0.00 2.57
1503 1598 9.688091 TTGGTGTAATATCTGGCTTGTTAATAA 57.312 29.630 0.00 0.00 0.00 1.40
1504 1599 9.860650 TGGTGTAATATCTGGCTTGTTAATAAT 57.139 29.630 0.00 0.00 0.00 1.28
1655 1900 7.170393 ACATTCACTACACACTTCTATGCTA 57.830 36.000 0.00 0.00 0.00 3.49
1805 2118 3.128068 CCCCGTTTGCTATGGTTTTACTC 59.872 47.826 0.00 0.00 0.00 2.59
1851 2164 2.222729 CGCACATCGTTTACAAGCTACC 60.223 50.000 0.00 0.00 0.00 3.18
2029 2342 2.408022 CGGCGAGGAGGTTCTACG 59.592 66.667 0.00 0.00 0.00 3.51
2121 2448 2.778679 CGCTGCTACGGCTGAAAC 59.221 61.111 0.00 0.00 39.31 2.78
2169 2555 0.818938 TATTGGTGCTGCATTGCCAG 59.181 50.000 5.27 5.07 35.93 4.85
2201 2587 0.526662 GGACACCGTCTACCTGACTG 59.473 60.000 0.00 0.00 43.25 3.51
2241 2630 1.452145 AAACCCATTCGTGCAGCGTT 61.452 50.000 8.22 0.00 42.13 4.84
2336 2725 2.538141 CCCCTTCTGCCAACCTCCA 61.538 63.158 0.00 0.00 0.00 3.86
2340 2729 1.227823 TTCTGCCAACCTCCACACG 60.228 57.895 0.00 0.00 0.00 4.49
2363 2752 3.737172 GCATCACACACCACGCCC 61.737 66.667 0.00 0.00 0.00 6.13
2364 2753 2.032528 CATCACACACCACGCCCT 59.967 61.111 0.00 0.00 0.00 5.19
2365 2754 2.032528 ATCACACACCACGCCCTG 59.967 61.111 0.00 0.00 0.00 4.45
2391 2780 1.821216 GGCCGAAACTGAGGATTTGA 58.179 50.000 0.00 0.00 0.00 2.69
2401 2790 0.033504 GAGGATTTGATAGCCGGCGA 59.966 55.000 23.20 18.26 0.00 5.54
2428 2817 1.168407 CGTGGGGCCATCACATCATC 61.168 60.000 22.69 1.60 35.03 2.92
2447 2836 4.038522 TCATCATCATCCTCGTCTTCTTCC 59.961 45.833 0.00 0.00 0.00 3.46
2449 2838 3.634448 TCATCATCCTCGTCTTCTTCCTC 59.366 47.826 0.00 0.00 0.00 3.71
2479 2868 0.033504 GAGCTCCACGAAACAGGTCA 59.966 55.000 0.87 0.00 35.22 4.02
2488 2877 1.666311 CGAAACAGGTCACTCCGAGTC 60.666 57.143 0.00 0.00 41.99 3.36
2493 2882 1.068194 CAGGTCACTCCGAGTCAAGAC 60.068 57.143 0.00 3.65 41.99 3.01
2498 2887 0.826672 ACTCCGAGTCAAGACCCGTT 60.827 55.000 3.54 0.00 30.22 4.44
2540 2929 2.359230 GGCGCCTCTTCAGCAGTT 60.359 61.111 22.15 0.00 0.00 3.16
2560 2949 0.109039 GGAGTCGTGGACAGAGCTTC 60.109 60.000 0.00 0.00 34.60 3.86
2628 3017 4.335647 ACTGCGGGGCTTCCACAG 62.336 66.667 11.31 11.31 40.22 3.66
2652 3041 4.766632 CCCCTGCTTTGGCTCCCC 62.767 72.222 0.00 0.00 39.59 4.81
2674 3063 1.305623 CCATCCCTGCTTGGCTTCT 59.694 57.895 0.00 0.00 0.00 2.85
2686 3075 4.261801 GCTTGGCTTCTTGGTAGATGTTA 58.738 43.478 0.00 0.00 0.00 2.41
2695 3084 5.891451 TCTTGGTAGATGTTACAGATGTCG 58.109 41.667 0.00 0.00 0.00 4.35
2703 3092 4.990543 TGTTACAGATGTCGCTTTTCTG 57.009 40.909 0.00 0.00 42.05 3.02
2705 3094 2.550830 ACAGATGTCGCTTTTCTGGT 57.449 45.000 4.40 0.00 40.92 4.00
2715 3104 1.238439 CTTTTCTGGTCACCGTGCAT 58.762 50.000 0.00 0.00 0.00 3.96
2729 3118 1.061131 CGTGCATCGGATTGTTGAGAC 59.939 52.381 0.00 0.00 35.71 3.36
2730 3119 2.350522 GTGCATCGGATTGTTGAGACT 58.649 47.619 0.00 0.00 0.00 3.24
2749 3138 7.963532 TGAGACTCTTTTAGGTGTTATCAGTT 58.036 34.615 3.68 0.00 0.00 3.16
2793 3361 3.310227 ACGAGAGTGCTATTGTCTCTACG 59.690 47.826 0.00 0.00 46.97 3.51
2794 3362 3.556365 CGAGAGTGCTATTGTCTCTACGA 59.444 47.826 0.00 0.00 38.45 3.43
2801 3369 8.172352 AGTGCTATTGTCTCTACGAATATCTT 57.828 34.615 0.00 0.00 0.00 2.40
2854 3422 1.812525 CTGCGCTCTGAGCTCCTTA 59.187 57.895 25.59 3.25 39.60 2.69
2887 3455 5.431765 TCTTTCAGCTTGAGAAAACTGTCT 58.568 37.500 0.09 0.00 34.84 3.41
2900 3468 0.896019 ACTGTCTAGCCTCTGCGTGT 60.896 55.000 0.00 0.00 44.33 4.49
2936 3504 5.336690 CCATAAAAGGTTGGATGTTGTGGAG 60.337 44.000 0.00 0.00 33.62 3.86
2963 3531 3.531207 CATGGAGCGAGCGGAGGA 61.531 66.667 0.00 0.00 0.00 3.71
2973 3541 4.101448 GCGGAGGATGCACTGGGT 62.101 66.667 0.00 0.00 0.00 4.51
2995 3563 4.435970 TCTCCCTGACGCCGCCTA 62.436 66.667 0.00 0.00 0.00 3.93
3020 3588 1.391485 GCAGACTACTCATGTGTTGCG 59.609 52.381 5.63 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.899239 CTGCAGATCCCCGTCGCC 62.899 72.222 8.42 0.00 0.00 5.54
1 2 4.899239 CCTGCAGATCCCCGTCGC 62.899 72.222 17.39 0.00 0.00 5.19
2 3 4.899239 GCCTGCAGATCCCCGTCG 62.899 72.222 17.39 0.00 0.00 5.12
3 4 4.899239 CGCCTGCAGATCCCCGTC 62.899 72.222 17.39 0.00 0.00 4.79
6 7 4.247380 CTCCGCCTGCAGATCCCC 62.247 72.222 17.39 0.00 0.00 4.81
7 8 4.925861 GCTCCGCCTGCAGATCCC 62.926 72.222 17.39 0.00 0.00 3.85
20 21 1.823041 GAGAATGGCCTGCTGCTCC 60.823 63.158 3.32 0.10 40.92 4.70
21 22 2.178890 CGAGAATGGCCTGCTGCTC 61.179 63.158 3.32 1.13 40.92 4.26
22 23 1.980784 ATCGAGAATGGCCTGCTGCT 61.981 55.000 3.32 0.00 40.92 4.24
23 24 1.099879 AATCGAGAATGGCCTGCTGC 61.100 55.000 3.32 0.00 40.16 5.25
24 25 0.942962 GAATCGAGAATGGCCTGCTG 59.057 55.000 3.32 0.00 0.00 4.41
25 26 0.179034 GGAATCGAGAATGGCCTGCT 60.179 55.000 3.32 0.00 0.00 4.24
26 27 1.169034 GGGAATCGAGAATGGCCTGC 61.169 60.000 3.32 0.00 0.00 4.85
27 28 0.471617 AGGGAATCGAGAATGGCCTG 59.528 55.000 3.32 0.00 0.00 4.85
28 29 0.761802 GAGGGAATCGAGAATGGCCT 59.238 55.000 3.32 0.00 0.00 5.19
29 30 0.250510 GGAGGGAATCGAGAATGGCC 60.251 60.000 0.00 0.00 0.00 5.36
30 31 0.601311 CGGAGGGAATCGAGAATGGC 60.601 60.000 0.00 0.00 0.00 4.40
69 70 3.414700 CCGGTGACAGCGTCTTGC 61.415 66.667 23.95 0.00 46.98 4.01
71 72 3.454587 TTGCCGGTGACAGCGTCTT 62.455 57.895 23.95 0.00 37.40 3.01
72 73 3.865929 CTTGCCGGTGACAGCGTCT 62.866 63.158 23.95 0.00 37.40 4.18
73 74 3.414700 CTTGCCGGTGACAGCGTC 61.415 66.667 23.95 13.66 37.40 5.19
74 75 3.865929 CTCTTGCCGGTGACAGCGT 62.866 63.158 23.95 0.00 37.40 5.07
75 76 2.842394 ATCTCTTGCCGGTGACAGCG 62.842 60.000 19.75 19.75 39.06 5.18
76 77 1.078848 ATCTCTTGCCGGTGACAGC 60.079 57.895 1.90 0.00 0.00 4.40
77 78 0.742281 CCATCTCTTGCCGGTGACAG 60.742 60.000 1.90 0.00 0.00 3.51
79 80 0.460987 CTCCATCTCTTGCCGGTGAC 60.461 60.000 1.90 0.00 0.00 3.67
80 81 0.614697 TCTCCATCTCTTGCCGGTGA 60.615 55.000 1.90 0.00 0.00 4.02
81 82 0.460987 GTCTCCATCTCTTGCCGGTG 60.461 60.000 1.90 0.00 0.00 4.94
82 83 1.901085 GTCTCCATCTCTTGCCGGT 59.099 57.895 1.90 0.00 0.00 5.28
83 84 1.227089 CGTCTCCATCTCTTGCCGG 60.227 63.158 0.00 0.00 0.00 6.13
84 85 1.880340 GCGTCTCCATCTCTTGCCG 60.880 63.158 0.00 0.00 0.00 5.69
85 86 0.391661 TTGCGTCTCCATCTCTTGCC 60.392 55.000 0.00 0.00 0.00 4.52
86 87 1.005340 CTTGCGTCTCCATCTCTTGC 58.995 55.000 0.00 0.00 0.00 4.01
87 88 2.662006 TCTTGCGTCTCCATCTCTTG 57.338 50.000 0.00 0.00 0.00 3.02
88 89 2.676463 GCTTCTTGCGTCTCCATCTCTT 60.676 50.000 0.00 0.00 0.00 2.85
89 90 1.134848 GCTTCTTGCGTCTCCATCTCT 60.135 52.381 0.00 0.00 0.00 3.10
90 91 1.285578 GCTTCTTGCGTCTCCATCTC 58.714 55.000 0.00 0.00 0.00 2.75
91 92 0.107945 GGCTTCTTGCGTCTCCATCT 60.108 55.000 0.00 0.00 44.05 2.90
92 93 1.424493 CGGCTTCTTGCGTCTCCATC 61.424 60.000 0.00 0.00 44.05 3.51
93 94 1.448540 CGGCTTCTTGCGTCTCCAT 60.449 57.895 0.00 0.00 44.05 3.41
101 102 4.760047 TCCTCCGCGGCTTCTTGC 62.760 66.667 23.51 0.00 41.94 4.01
102 103 2.510238 CTCCTCCGCGGCTTCTTG 60.510 66.667 23.51 4.18 0.00 3.02
103 104 3.775654 CCTCCTCCGCGGCTTCTT 61.776 66.667 23.51 0.00 0.00 2.52
111 112 4.292178 CATCTCCGCCTCCTCCGC 62.292 72.222 0.00 0.00 0.00 5.54
112 113 2.356818 GAACATCTCCGCCTCCTCCG 62.357 65.000 0.00 0.00 0.00 4.63
113 114 1.443828 GAACATCTCCGCCTCCTCC 59.556 63.158 0.00 0.00 0.00 4.30
114 115 1.066587 CGAACATCTCCGCCTCCTC 59.933 63.158 0.00 0.00 0.00 3.71
115 116 3.082579 GCGAACATCTCCGCCTCCT 62.083 63.158 0.00 0.00 45.06 3.69
116 117 2.586357 GCGAACATCTCCGCCTCC 60.586 66.667 0.00 0.00 45.06 4.30
121 122 1.491670 CATGTAGGCGAACATCTCCG 58.508 55.000 5.67 0.00 38.01 4.63
123 124 2.890808 TCCATGTAGGCGAACATCTC 57.109 50.000 5.67 0.00 38.01 2.75
124 125 2.700371 TCATCCATGTAGGCGAACATCT 59.300 45.455 5.67 0.00 38.01 2.90
125 126 3.062763 CTCATCCATGTAGGCGAACATC 58.937 50.000 5.67 0.00 38.01 3.06
126 127 2.224378 CCTCATCCATGTAGGCGAACAT 60.224 50.000 3.10 3.10 40.75 2.71
129 130 1.412710 GACCTCATCCATGTAGGCGAA 59.587 52.381 0.00 0.00 37.29 4.70
131 132 0.752658 TGACCTCATCCATGTAGGCG 59.247 55.000 0.00 0.00 37.29 5.52
132 133 2.843701 CTTGACCTCATCCATGTAGGC 58.156 52.381 0.00 0.00 37.29 3.93
134 135 3.133542 TCTGCTTGACCTCATCCATGTAG 59.866 47.826 0.00 0.00 0.00 2.74
137 138 2.704464 TCTGCTTGACCTCATCCATG 57.296 50.000 0.00 0.00 0.00 3.66
139 140 1.280133 CCTTCTGCTTGACCTCATCCA 59.720 52.381 0.00 0.00 0.00 3.41
142 143 1.558756 CCTCCTTCTGCTTGACCTCAT 59.441 52.381 0.00 0.00 0.00 2.90
145 146 1.558756 CATCCTCCTTCTGCTTGACCT 59.441 52.381 0.00 0.00 0.00 3.85
146 147 1.556911 TCATCCTCCTTCTGCTTGACC 59.443 52.381 0.00 0.00 0.00 4.02
147 148 2.903798 CTCATCCTCCTTCTGCTTGAC 58.096 52.381 0.00 0.00 0.00 3.18
148 149 1.209019 GCTCATCCTCCTTCTGCTTGA 59.791 52.381 0.00 0.00 0.00 3.02
149 150 1.666054 GCTCATCCTCCTTCTGCTTG 58.334 55.000 0.00 0.00 0.00 4.01
150 151 0.545646 GGCTCATCCTCCTTCTGCTT 59.454 55.000 0.00 0.00 0.00 3.91
151 152 1.684386 CGGCTCATCCTCCTTCTGCT 61.684 60.000 0.00 0.00 0.00 4.24
152 153 1.227497 CGGCTCATCCTCCTTCTGC 60.227 63.158 0.00 0.00 0.00 4.26
153 154 1.045350 TCCGGCTCATCCTCCTTCTG 61.045 60.000 0.00 0.00 0.00 3.02
154 155 0.758685 CTCCGGCTCATCCTCCTTCT 60.759 60.000 0.00 0.00 0.00 2.85
155 156 1.745264 CTCCGGCTCATCCTCCTTC 59.255 63.158 0.00 0.00 0.00 3.46
156 157 2.439104 GCTCCGGCTCATCCTCCTT 61.439 63.158 0.00 0.00 35.22 3.36
157 158 2.841988 GCTCCGGCTCATCCTCCT 60.842 66.667 0.00 0.00 35.22 3.69
159 160 3.934962 GGGCTCCGGCTCATCCTC 61.935 72.222 0.00 0.00 39.12 3.71
160 161 4.488911 AGGGCTCCGGCTCATCCT 62.489 66.667 0.00 0.00 42.42 3.24
161 162 3.934962 GAGGGCTCCGGCTCATCC 61.935 72.222 0.00 0.00 42.42 3.51
191 192 1.800315 GATGTCCACGACGACGGTG 60.800 63.158 12.58 7.45 44.46 4.94
192 193 1.521450 AAGATGTCCACGACGACGGT 61.521 55.000 12.58 0.00 44.46 4.83
194 195 0.109919 TGAAGATGTCCACGACGACG 60.110 55.000 5.58 5.58 45.75 5.12
196 197 1.664874 CGTTGAAGATGTCCACGACGA 60.665 52.381 0.00 0.00 45.77 4.20
198 199 2.060326 TCGTTGAAGATGTCCACGAC 57.940 50.000 0.00 0.00 46.25 4.34
200 201 0.708370 CGTCGTTGAAGATGTCCACG 59.292 55.000 0.00 0.00 44.61 4.94
201 202 1.986378 CTCGTCGTTGAAGATGTCCAC 59.014 52.381 0.00 0.00 0.00 4.02
202 203 1.067846 CCTCGTCGTTGAAGATGTCCA 60.068 52.381 0.00 0.00 0.00 4.02
203 204 1.201647 TCCTCGTCGTTGAAGATGTCC 59.798 52.381 0.00 0.00 0.00 4.02
204 205 2.631418 TCCTCGTCGTTGAAGATGTC 57.369 50.000 0.00 0.00 0.00 3.06
205 206 3.489398 GCTATCCTCGTCGTTGAAGATGT 60.489 47.826 0.00 0.00 0.00 3.06
206 207 3.046390 GCTATCCTCGTCGTTGAAGATG 58.954 50.000 0.00 0.00 0.00 2.90
207 208 2.952978 AGCTATCCTCGTCGTTGAAGAT 59.047 45.455 0.00 0.00 0.00 2.40
208 209 2.097629 CAGCTATCCTCGTCGTTGAAGA 59.902 50.000 0.00 0.00 0.00 2.87
211 212 0.738975 CCAGCTATCCTCGTCGTTGA 59.261 55.000 0.00 0.00 0.00 3.18
213 214 1.392710 CCCCAGCTATCCTCGTCGTT 61.393 60.000 0.00 0.00 0.00 3.85
214 215 1.828660 CCCCAGCTATCCTCGTCGT 60.829 63.158 0.00 0.00 0.00 4.34
215 216 0.536687 TACCCCAGCTATCCTCGTCG 60.537 60.000 0.00 0.00 0.00 5.12
216 217 1.249407 CTACCCCAGCTATCCTCGTC 58.751 60.000 0.00 0.00 0.00 4.20
217 218 0.556747 ACTACCCCAGCTATCCTCGT 59.443 55.000 0.00 0.00 0.00 4.18
218 219 2.581216 TACTACCCCAGCTATCCTCG 57.419 55.000 0.00 0.00 0.00 4.63
219 220 3.780626 ACATACTACCCCAGCTATCCTC 58.219 50.000 0.00 0.00 0.00 3.71
220 221 3.925261 ACATACTACCCCAGCTATCCT 57.075 47.619 0.00 0.00 0.00 3.24
221 222 5.331069 TCTTACATACTACCCCAGCTATCC 58.669 45.833 0.00 0.00 0.00 2.59
222 223 7.483580 AATCTTACATACTACCCCAGCTATC 57.516 40.000 0.00 0.00 0.00 2.08
223 224 7.292591 ACAAATCTTACATACTACCCCAGCTAT 59.707 37.037 0.00 0.00 0.00 2.97
224 225 6.614087 ACAAATCTTACATACTACCCCAGCTA 59.386 38.462 0.00 0.00 0.00 3.32
225 226 5.428783 ACAAATCTTACATACTACCCCAGCT 59.571 40.000 0.00 0.00 0.00 4.24
226 227 5.681639 ACAAATCTTACATACTACCCCAGC 58.318 41.667 0.00 0.00 0.00 4.85
227 228 8.458843 CAAAACAAATCTTACATACTACCCCAG 58.541 37.037 0.00 0.00 0.00 4.45
228 229 7.094118 GCAAAACAAATCTTACATACTACCCCA 60.094 37.037 0.00 0.00 0.00 4.96
229 230 7.094118 TGCAAAACAAATCTTACATACTACCCC 60.094 37.037 0.00 0.00 0.00 4.95
230 231 7.822658 TGCAAAACAAATCTTACATACTACCC 58.177 34.615 0.00 0.00 0.00 3.69
231 232 9.289303 CATGCAAAACAAATCTTACATACTACC 57.711 33.333 0.00 0.00 0.00 3.18
232 233 8.798153 GCATGCAAAACAAATCTTACATACTAC 58.202 33.333 14.21 0.00 0.00 2.73
233 234 8.739039 AGCATGCAAAACAAATCTTACATACTA 58.261 29.630 21.98 0.00 0.00 1.82
234 235 7.605449 AGCATGCAAAACAAATCTTACATACT 58.395 30.769 21.98 0.00 0.00 2.12
237 238 7.227116 ACAAAGCATGCAAAACAAATCTTACAT 59.773 29.630 21.98 0.00 0.00 2.29
238 239 6.538021 ACAAAGCATGCAAAACAAATCTTACA 59.462 30.769 21.98 0.00 0.00 2.41
239 240 6.947258 ACAAAGCATGCAAAACAAATCTTAC 58.053 32.000 21.98 0.00 0.00 2.34
240 241 8.710551 CATACAAAGCATGCAAAACAAATCTTA 58.289 29.630 21.98 0.00 0.00 2.10
241 242 7.308109 CCATACAAAGCATGCAAAACAAATCTT 60.308 33.333 21.98 0.00 0.00 2.40
242 243 6.148150 CCATACAAAGCATGCAAAACAAATCT 59.852 34.615 21.98 0.00 0.00 2.40
243 244 6.147492 TCCATACAAAGCATGCAAAACAAATC 59.853 34.615 21.98 0.00 0.00 2.17
244 245 5.996513 TCCATACAAAGCATGCAAAACAAAT 59.003 32.000 21.98 1.32 0.00 2.32
247 248 4.597404 TCCATACAAAGCATGCAAAACA 57.403 36.364 21.98 1.79 0.00 2.83
251 252 4.823442 CCTAGATCCATACAAAGCATGCAA 59.177 41.667 21.98 0.00 0.00 4.08
255 256 4.242811 TCCCCTAGATCCATACAAAGCAT 58.757 43.478 0.00 0.00 0.00 3.79
256 257 3.664320 TCCCCTAGATCCATACAAAGCA 58.336 45.455 0.00 0.00 0.00 3.91
258 259 6.439636 TTCATCCCCTAGATCCATACAAAG 57.560 41.667 0.00 0.00 30.59 2.77
260 261 8.551440 CATATTTCATCCCCTAGATCCATACAA 58.449 37.037 0.00 0.00 30.59 2.41
261 262 7.906192 TCATATTTCATCCCCTAGATCCATACA 59.094 37.037 0.00 0.00 30.59 2.29
262 263 8.324191 TCATATTTCATCCCCTAGATCCATAC 57.676 38.462 0.00 0.00 30.59 2.39
263 264 8.354486 TCTCATATTTCATCCCCTAGATCCATA 58.646 37.037 0.00 0.00 30.59 2.74
264 265 7.201920 TCTCATATTTCATCCCCTAGATCCAT 58.798 38.462 0.00 0.00 30.59 3.41
265 266 6.574463 TCTCATATTTCATCCCCTAGATCCA 58.426 40.000 0.00 0.00 30.59 3.41
266 267 6.900186 TCTCTCATATTTCATCCCCTAGATCC 59.100 42.308 0.00 0.00 30.59 3.36
267 268 7.069826 CCTCTCTCATATTTCATCCCCTAGATC 59.930 44.444 0.00 0.00 30.59 2.75
268 269 6.902416 CCTCTCTCATATTTCATCCCCTAGAT 59.098 42.308 0.00 0.00 34.66 1.98
269 270 6.259893 CCTCTCTCATATTTCATCCCCTAGA 58.740 44.000 0.00 0.00 0.00 2.43
270 271 5.104982 GCCTCTCTCATATTTCATCCCCTAG 60.105 48.000 0.00 0.00 0.00 3.02
271 272 4.780021 GCCTCTCTCATATTTCATCCCCTA 59.220 45.833 0.00 0.00 0.00 3.53
272 273 3.586618 GCCTCTCTCATATTTCATCCCCT 59.413 47.826 0.00 0.00 0.00 4.79
273 274 3.618507 CGCCTCTCTCATATTTCATCCCC 60.619 52.174 0.00 0.00 0.00 4.81
274 275 3.594134 CGCCTCTCTCATATTTCATCCC 58.406 50.000 0.00 0.00 0.00 3.85
276 277 4.527509 TCCGCCTCTCTCATATTTCATC 57.472 45.455 0.00 0.00 0.00 2.92
277 278 4.829968 CATCCGCCTCTCTCATATTTCAT 58.170 43.478 0.00 0.00 0.00 2.57
278 279 3.555795 GCATCCGCCTCTCTCATATTTCA 60.556 47.826 0.00 0.00 0.00 2.69
280 281 2.369860 TGCATCCGCCTCTCTCATATTT 59.630 45.455 0.00 0.00 37.32 1.40
281 282 1.973515 TGCATCCGCCTCTCTCATATT 59.026 47.619 0.00 0.00 37.32 1.28
283 284 0.964700 CTGCATCCGCCTCTCTCATA 59.035 55.000 0.00 0.00 37.32 2.15
284 285 0.758310 TCTGCATCCGCCTCTCTCAT 60.758 55.000 0.00 0.00 37.32 2.90
285 286 0.972471 TTCTGCATCCGCCTCTCTCA 60.972 55.000 0.00 0.00 37.32 3.27
286 287 0.392336 ATTCTGCATCCGCCTCTCTC 59.608 55.000 0.00 0.00 37.32 3.20
287 288 0.106335 CATTCTGCATCCGCCTCTCT 59.894 55.000 0.00 0.00 37.32 3.10
288 289 0.883814 CCATTCTGCATCCGCCTCTC 60.884 60.000 0.00 0.00 37.32 3.20
289 290 1.147824 CCATTCTGCATCCGCCTCT 59.852 57.895 0.00 0.00 37.32 3.69
290 291 2.550101 GCCATTCTGCATCCGCCTC 61.550 63.158 0.00 0.00 37.32 4.70
291 292 1.699054 TAGCCATTCTGCATCCGCCT 61.699 55.000 0.00 0.00 37.32 5.52
292 293 0.819259 TTAGCCATTCTGCATCCGCC 60.819 55.000 0.00 0.00 37.32 6.13
293 294 1.242076 ATTAGCCATTCTGCATCCGC 58.758 50.000 0.00 0.00 39.24 5.54
294 295 3.316029 TCAAATTAGCCATTCTGCATCCG 59.684 43.478 0.00 0.00 0.00 4.18
295 296 4.581824 TCTCAAATTAGCCATTCTGCATCC 59.418 41.667 0.00 0.00 0.00 3.51
298 299 3.374988 CGTCTCAAATTAGCCATTCTGCA 59.625 43.478 0.00 0.00 0.00 4.41
299 300 3.375299 ACGTCTCAAATTAGCCATTCTGC 59.625 43.478 0.00 0.00 0.00 4.26
300 301 4.393062 ACACGTCTCAAATTAGCCATTCTG 59.607 41.667 0.00 0.00 0.00 3.02
301 302 4.579869 ACACGTCTCAAATTAGCCATTCT 58.420 39.130 0.00 0.00 0.00 2.40
302 303 4.201822 GGACACGTCTCAAATTAGCCATTC 60.202 45.833 0.00 0.00 0.00 2.67
303 304 3.689649 GGACACGTCTCAAATTAGCCATT 59.310 43.478 0.00 0.00 0.00 3.16
304 305 3.270877 GGACACGTCTCAAATTAGCCAT 58.729 45.455 0.00 0.00 0.00 4.40
305 306 2.695359 GGACACGTCTCAAATTAGCCA 58.305 47.619 0.00 0.00 0.00 4.75
308 309 4.421058 TGATCGGACACGTCTCAAATTAG 58.579 43.478 0.00 0.00 41.85 1.73
309 310 4.082408 ACTGATCGGACACGTCTCAAATTA 60.082 41.667 9.00 0.00 41.85 1.40
310 311 3.254060 CTGATCGGACACGTCTCAAATT 58.746 45.455 0.00 0.00 41.85 1.82
311 312 2.231478 ACTGATCGGACACGTCTCAAAT 59.769 45.455 9.00 0.00 41.85 2.32
313 314 1.068541 CACTGATCGGACACGTCTCAA 60.069 52.381 9.00 0.00 41.85 3.02
315 316 0.798771 GCACTGATCGGACACGTCTC 60.799 60.000 9.00 0.00 41.85 3.36
316 317 1.213013 GCACTGATCGGACACGTCT 59.787 57.895 9.00 0.00 41.85 4.18
317 318 1.805945 GGCACTGATCGGACACGTC 60.806 63.158 9.00 0.00 41.85 4.34
318 319 2.261671 GGCACTGATCGGACACGT 59.738 61.111 9.00 0.00 41.85 4.49
320 321 2.509336 CGGGCACTGATCGGACAC 60.509 66.667 9.00 0.00 36.31 3.67
340 341 4.941309 ACCCGGCCCACAAACGTC 62.941 66.667 0.00 0.00 0.00 4.34
342 343 3.220658 AAACCCGGCCCACAAACG 61.221 61.111 0.00 0.00 0.00 3.60
345 346 4.841617 TGCAAACCCGGCCCACAA 62.842 61.111 0.00 0.00 0.00 3.33
346 347 4.841617 TTGCAAACCCGGCCCACA 62.842 61.111 0.00 0.00 0.00 4.17
348 349 3.230245 CTTTGCAAACCCGGCCCA 61.230 61.111 8.05 0.00 0.00 5.36
349 350 3.220999 GACTTTGCAAACCCGGCCC 62.221 63.158 8.05 0.00 0.00 5.80
350 351 2.338620 GACTTTGCAAACCCGGCC 59.661 61.111 8.05 0.00 0.00 6.13
351 352 2.338620 GGACTTTGCAAACCCGGC 59.661 61.111 8.05 0.34 0.00 6.13
354 355 0.249280 CAACCGGACTTTGCAAACCC 60.249 55.000 9.46 11.36 0.00 4.11
361 362 0.109597 GCATCTGCAACCGGACTTTG 60.110 55.000 9.46 3.09 41.59 2.77
362 363 0.250901 AGCATCTGCAACCGGACTTT 60.251 50.000 9.46 0.00 45.16 2.66
363 364 0.674895 GAGCATCTGCAACCGGACTT 60.675 55.000 9.46 0.00 45.16 3.01
376 377 6.932356 TGAAATCACATTCCTTAGAGCATC 57.068 37.500 0.00 0.00 0.00 3.91
377 378 7.507733 GATGAAATCACATTCCTTAGAGCAT 57.492 36.000 0.00 0.00 44.70 3.79
393 394 7.966246 ATCATGTGCTTAGAGAGATGAAATC 57.034 36.000 0.00 0.00 46.04 2.17
396 397 7.234166 TGGATATCATGTGCTTAGAGAGATGAA 59.766 37.037 4.83 0.00 0.00 2.57
397 398 6.723052 TGGATATCATGTGCTTAGAGAGATGA 59.277 38.462 4.83 0.00 0.00 2.92
398 399 6.932947 TGGATATCATGTGCTTAGAGAGATG 58.067 40.000 4.83 0.00 0.00 2.90
400 401 6.983906 TTGGATATCATGTGCTTAGAGAGA 57.016 37.500 4.83 0.00 0.00 3.10
401 402 6.594547 CCATTGGATATCATGTGCTTAGAGAG 59.405 42.308 4.83 0.00 0.00 3.20
402 403 6.270695 TCCATTGGATATCATGTGCTTAGAGA 59.729 38.462 0.00 0.00 0.00 3.10
403 404 6.370994 GTCCATTGGATATCATGTGCTTAGAG 59.629 42.308 9.01 0.00 32.73 2.43
404 405 6.183361 TGTCCATTGGATATCATGTGCTTAGA 60.183 38.462 9.01 0.00 32.73 2.10
405 406 5.999600 TGTCCATTGGATATCATGTGCTTAG 59.000 40.000 9.01 0.00 32.73 2.18
406 407 5.939447 TGTCCATTGGATATCATGTGCTTA 58.061 37.500 9.01 0.00 32.73 3.09
407 408 4.795469 TGTCCATTGGATATCATGTGCTT 58.205 39.130 9.01 0.00 32.73 3.91
409 410 4.521639 ACATGTCCATTGGATATCATGTGC 59.478 41.667 27.09 7.98 41.85 4.57
410 411 5.766174 TGACATGTCCATTGGATATCATGTG 59.234 40.000 30.32 17.17 42.76 3.21
411 412 5.944135 TGACATGTCCATTGGATATCATGT 58.056 37.500 27.63 27.63 44.22 3.21
412 413 6.235664 TCTGACATGTCCATTGGATATCATG 58.764 40.000 22.85 23.36 38.70 3.07
413 414 6.443995 TCTGACATGTCCATTGGATATCAT 57.556 37.500 22.85 6.70 31.14 2.45
415 416 8.316946 TCTTATCTGACATGTCCATTGGATATC 58.683 37.037 22.85 4.34 31.14 1.63
416 417 8.211030 TCTTATCTGACATGTCCATTGGATAT 57.789 34.615 22.85 9.01 33.82 1.63
417 418 7.616528 TCTTATCTGACATGTCCATTGGATA 57.383 36.000 22.85 16.95 32.73 2.59
418 419 6.505048 TCTTATCTGACATGTCCATTGGAT 57.495 37.500 22.85 17.78 32.73 3.41
419 420 5.955961 TCTTATCTGACATGTCCATTGGA 57.044 39.130 22.85 12.76 0.00 3.53
421 422 5.472478 CCCATCTTATCTGACATGTCCATTG 59.528 44.000 22.85 10.51 0.00 2.82
422 423 5.628130 CCCATCTTATCTGACATGTCCATT 58.372 41.667 22.85 9.69 0.00 3.16
424 425 3.181451 GCCCATCTTATCTGACATGTCCA 60.181 47.826 22.85 10.09 0.00 4.02
425 426 3.181451 TGCCCATCTTATCTGACATGTCC 60.181 47.826 22.85 5.91 0.00 4.02
426 427 4.077300 TGCCCATCTTATCTGACATGTC 57.923 45.455 19.27 19.27 0.00 3.06
427 428 4.080129 AGTTGCCCATCTTATCTGACATGT 60.080 41.667 0.00 0.00 0.00 3.21
428 429 4.458397 AGTTGCCCATCTTATCTGACATG 58.542 43.478 0.00 0.00 0.00 3.21
429 430 4.785346 AGTTGCCCATCTTATCTGACAT 57.215 40.909 0.00 0.00 0.00 3.06
430 431 4.264253 CAAGTTGCCCATCTTATCTGACA 58.736 43.478 0.00 0.00 0.00 3.58
431 432 3.629398 CCAAGTTGCCCATCTTATCTGAC 59.371 47.826 0.00 0.00 0.00 3.51
432 433 3.266772 ACCAAGTTGCCCATCTTATCTGA 59.733 43.478 0.00 0.00 0.00 3.27
434 435 4.227300 TGTACCAAGTTGCCCATCTTATCT 59.773 41.667 0.00 0.00 0.00 1.98
438 439 2.969821 TGTACCAAGTTGCCCATCTT 57.030 45.000 0.00 0.00 0.00 2.40
439 440 2.375174 TCTTGTACCAAGTTGCCCATCT 59.625 45.455 0.00 0.00 0.00 2.90
440 441 2.488153 GTCTTGTACCAAGTTGCCCATC 59.512 50.000 0.00 0.00 0.00 3.51
441 442 2.108250 AGTCTTGTACCAAGTTGCCCAT 59.892 45.455 0.00 0.00 0.00 4.00
443 444 2.271944 AGTCTTGTACCAAGTTGCCC 57.728 50.000 0.00 0.00 0.00 5.36
445 446 5.063564 GCTACATAGTCTTGTACCAAGTTGC 59.936 44.000 0.00 0.00 0.00 4.17
446 447 6.163476 TGCTACATAGTCTTGTACCAAGTTG 58.837 40.000 0.00 0.00 0.00 3.16
447 448 6.354794 TGCTACATAGTCTTGTACCAAGTT 57.645 37.500 4.08 0.00 0.00 2.66
449 450 4.806247 GCTGCTACATAGTCTTGTACCAAG 59.194 45.833 0.00 0.00 0.00 3.61
450 451 4.221924 TGCTGCTACATAGTCTTGTACCAA 59.778 41.667 0.00 0.00 0.00 3.67
452 453 4.386867 TGCTGCTACATAGTCTTGTACC 57.613 45.455 0.00 0.00 0.00 3.34
453 454 6.758886 AGAAATGCTGCTACATAGTCTTGTAC 59.241 38.462 0.00 0.00 0.00 2.90
454 455 6.878317 AGAAATGCTGCTACATAGTCTTGTA 58.122 36.000 0.00 0.00 0.00 2.41
456 457 5.814188 TGAGAAATGCTGCTACATAGTCTTG 59.186 40.000 0.00 0.00 29.32 3.02
458 459 5.604758 TGAGAAATGCTGCTACATAGTCT 57.395 39.130 0.00 5.77 30.92 3.24
460 461 6.351711 TGAATGAGAAATGCTGCTACATAGT 58.648 36.000 0.00 0.00 0.00 2.12
461 462 6.856135 TGAATGAGAAATGCTGCTACATAG 57.144 37.500 0.00 0.00 0.00 2.23
462 463 7.812690 ATTGAATGAGAAATGCTGCTACATA 57.187 32.000 0.00 0.00 0.00 2.29
495 496 6.015434 GCCAAAAAGATCAAAGAGGGAAAGTA 60.015 38.462 0.00 0.00 0.00 2.24
496 497 5.221521 GCCAAAAAGATCAAAGAGGGAAAGT 60.222 40.000 0.00 0.00 0.00 2.66
499 500 4.222336 TGCCAAAAAGATCAAAGAGGGAA 58.778 39.130 0.00 0.00 0.00 3.97
500 501 3.828451 CTGCCAAAAAGATCAAAGAGGGA 59.172 43.478 0.00 0.00 0.00 4.20
503 504 5.954296 TCTCTGCCAAAAAGATCAAAGAG 57.046 39.130 0.00 0.00 32.92 2.85
504 505 6.718454 AGAATCTCTGCCAAAAAGATCAAAGA 59.282 34.615 0.00 0.00 0.00 2.52
506 507 6.491062 TGAGAATCTCTGCCAAAAAGATCAAA 59.509 34.615 11.92 0.00 34.92 2.69
508 509 5.413833 GTGAGAATCTCTGCCAAAAAGATCA 59.586 40.000 11.92 0.00 34.92 2.92
511 512 4.074970 GGTGAGAATCTCTGCCAAAAAGA 58.925 43.478 11.92 0.00 34.92 2.52
512 513 3.192212 GGGTGAGAATCTCTGCCAAAAAG 59.808 47.826 19.84 0.00 34.92 2.27
513 514 3.157087 GGGTGAGAATCTCTGCCAAAAA 58.843 45.455 19.84 0.00 34.92 1.94
514 515 2.376518 AGGGTGAGAATCTCTGCCAAAA 59.623 45.455 19.84 0.00 34.92 2.44
515 516 1.988107 AGGGTGAGAATCTCTGCCAAA 59.012 47.619 19.84 0.00 34.92 3.28
516 517 1.661463 AGGGTGAGAATCTCTGCCAA 58.339 50.000 19.84 0.00 34.92 4.52
517 518 1.661463 AAGGGTGAGAATCTCTGCCA 58.339 50.000 19.84 0.00 34.92 4.92
519 520 5.882557 TGAAAATAAGGGTGAGAATCTCTGC 59.117 40.000 11.92 4.54 34.92 4.26
520 521 8.517062 AATGAAAATAAGGGTGAGAATCTCTG 57.483 34.615 11.92 0.00 34.92 3.35
522 523 7.013750 GGGAATGAAAATAAGGGTGAGAATCTC 59.986 40.741 2.75 2.75 34.92 2.75
523 524 6.836007 GGGAATGAAAATAAGGGTGAGAATCT 59.164 38.462 0.00 0.00 34.92 2.40
524 525 6.607198 TGGGAATGAAAATAAGGGTGAGAATC 59.393 38.462 0.00 0.00 0.00 2.52
525 526 6.502138 TGGGAATGAAAATAAGGGTGAGAAT 58.498 36.000 0.00 0.00 0.00 2.40
526 527 5.898120 TGGGAATGAAAATAAGGGTGAGAA 58.102 37.500 0.00 0.00 0.00 2.87
527 528 5.528600 TGGGAATGAAAATAAGGGTGAGA 57.471 39.130 0.00 0.00 0.00 3.27
531 532 5.124036 TCGATGGGAATGAAAATAAGGGT 57.876 39.130 0.00 0.00 0.00 4.34
539 540 2.505650 TTGGCTCGATGGGAATGAAA 57.494 45.000 0.00 0.00 0.00 2.69
549 550 1.470098 GTGAACATGCTTTGGCTCGAT 59.530 47.619 0.00 0.00 39.59 3.59
556 557 0.110238 CGGGTCGTGAACATGCTTTG 60.110 55.000 0.00 0.00 0.00 2.77
557 558 1.234615 CCGGGTCGTGAACATGCTTT 61.235 55.000 0.00 0.00 0.00 3.51
575 583 3.344515 CCTAACTGAACAAGGCCTTACC 58.655 50.000 20.00 10.70 39.61 2.85
583 591 2.859165 TCCCTGCCTAACTGAACAAG 57.141 50.000 0.00 0.00 0.00 3.16
585 593 2.290896 CCATTCCCTGCCTAACTGAACA 60.291 50.000 0.00 0.00 0.00 3.18
588 596 1.839994 CTCCATTCCCTGCCTAACTGA 59.160 52.381 0.00 0.00 0.00 3.41
590 598 2.122768 CTCTCCATTCCCTGCCTAACT 58.877 52.381 0.00 0.00 0.00 2.24
593 601 0.343372 ACCTCTCCATTCCCTGCCTA 59.657 55.000 0.00 0.00 0.00 3.93
594 602 0.551131 AACCTCTCCATTCCCTGCCT 60.551 55.000 0.00 0.00 0.00 4.75
595 603 0.332972 AAACCTCTCCATTCCCTGCC 59.667 55.000 0.00 0.00 0.00 4.85
597 605 3.439857 TTCAAACCTCTCCATTCCCTG 57.560 47.619 0.00 0.00 0.00 4.45
598 606 4.411013 CTTTTCAAACCTCTCCATTCCCT 58.589 43.478 0.00 0.00 0.00 4.20
600 608 4.407365 TCCTTTTCAAACCTCTCCATTCC 58.593 43.478 0.00 0.00 0.00 3.01
601 609 6.209391 TGAATCCTTTTCAAACCTCTCCATTC 59.791 38.462 0.00 0.00 0.00 2.67
602 610 6.077322 TGAATCCTTTTCAAACCTCTCCATT 58.923 36.000 0.00 0.00 0.00 3.16
603 611 5.644188 TGAATCCTTTTCAAACCTCTCCAT 58.356 37.500 0.00 0.00 0.00 3.41
605 613 6.405278 TTTGAATCCTTTTCAAACCTCTCC 57.595 37.500 8.91 0.00 41.74 3.71
619 627 2.893489 GACTTGCAAGGGTTTGAATCCT 59.107 45.455 29.18 4.43 42.76 3.24
620 628 2.627699 TGACTTGCAAGGGTTTGAATCC 59.372 45.455 29.18 6.57 36.36 3.01
621 629 4.320608 TTGACTTGCAAGGGTTTGAATC 57.679 40.909 29.18 15.51 36.36 2.52
622 630 4.751767 TTTGACTTGCAAGGGTTTGAAT 57.248 36.364 29.18 6.52 37.87 2.57
624 632 4.751767 ATTTTGACTTGCAAGGGTTTGA 57.248 36.364 29.18 11.55 37.87 2.69
625 633 5.220835 GGAAATTTTGACTTGCAAGGGTTTG 60.221 40.000 29.18 5.47 37.87 2.93
626 634 4.881273 GGAAATTTTGACTTGCAAGGGTTT 59.119 37.500 29.18 18.28 37.87 3.27
627 635 4.450976 GGAAATTTTGACTTGCAAGGGTT 58.549 39.130 29.18 9.67 37.87 4.11
628 636 3.181455 GGGAAATTTTGACTTGCAAGGGT 60.181 43.478 29.18 11.34 37.87 4.34
632 640 6.540551 GGTTTTAGGGAAATTTTGACTTGCAA 59.459 34.615 0.00 0.00 33.88 4.08
635 643 6.929049 GGAGGTTTTAGGGAAATTTTGACTTG 59.071 38.462 0.00 0.00 0.00 3.16
636 644 6.042781 GGGAGGTTTTAGGGAAATTTTGACTT 59.957 38.462 0.00 0.00 0.00 3.01
637 645 5.542635 GGGAGGTTTTAGGGAAATTTTGACT 59.457 40.000 0.00 0.00 0.00 3.41
638 646 5.279809 GGGGAGGTTTTAGGGAAATTTTGAC 60.280 44.000 0.00 0.00 0.00 3.18
639 647 4.841813 GGGGAGGTTTTAGGGAAATTTTGA 59.158 41.667 0.00 0.00 0.00 2.69
640 648 4.322424 CGGGGAGGTTTTAGGGAAATTTTG 60.322 45.833 0.00 0.00 0.00 2.44
641 649 3.835978 CGGGGAGGTTTTAGGGAAATTTT 59.164 43.478 0.00 0.00 0.00 1.82
642 650 3.076333 TCGGGGAGGTTTTAGGGAAATTT 59.924 43.478 0.00 0.00 0.00 1.82
643 651 2.650827 TCGGGGAGGTTTTAGGGAAATT 59.349 45.455 0.00 0.00 0.00 1.82
645 653 1.744872 TCGGGGAGGTTTTAGGGAAA 58.255 50.000 0.00 0.00 0.00 3.13
646 654 1.841919 GATCGGGGAGGTTTTAGGGAA 59.158 52.381 0.00 0.00 0.00 3.97
647 655 1.503800 GATCGGGGAGGTTTTAGGGA 58.496 55.000 0.00 0.00 0.00 4.20
649 657 0.472898 GGGATCGGGGAGGTTTTAGG 59.527 60.000 0.00 0.00 0.00 2.69
651 659 0.045162 AGGGGATCGGGGAGGTTTTA 59.955 55.000 0.00 0.00 0.00 1.52
653 661 1.230182 AAGGGGATCGGGGAGGTTT 60.230 57.895 0.00 0.00 0.00 3.27
655 663 2.040779 GAAGGGGATCGGGGAGGT 60.041 66.667 0.00 0.00 0.00 3.85
656 664 1.062488 ATTGAAGGGGATCGGGGAGG 61.062 60.000 0.00 0.00 0.00 4.30
659 667 1.456287 GGATTGAAGGGGATCGGGG 59.544 63.158 0.00 0.00 0.00 5.73
661 669 1.729586 TAGGGATTGAAGGGGATCGG 58.270 55.000 0.00 0.00 0.00 4.18
662 670 2.026822 CCATAGGGATTGAAGGGGATCG 60.027 54.545 0.00 0.00 35.59 3.69
663 671 2.989571 ACCATAGGGATTGAAGGGGATC 59.010 50.000 0.00 0.00 38.05 3.36
665 673 2.135189 CACCATAGGGATTGAAGGGGA 58.865 52.381 0.00 0.00 38.05 4.81
666 674 2.107204 CTCACCATAGGGATTGAAGGGG 59.893 54.545 0.00 0.00 38.05 4.79
667 675 2.107204 CCTCACCATAGGGATTGAAGGG 59.893 54.545 0.00 0.00 38.05 3.95
668 676 3.498774 CCTCACCATAGGGATTGAAGG 57.501 52.381 0.00 0.00 38.05 3.46
677 685 2.038557 CGGTTAATCCCCTCACCATAGG 59.961 54.545 0.00 0.00 36.30 2.57
679 687 3.049108 TCGGTTAATCCCCTCACCATA 57.951 47.619 0.00 0.00 0.00 2.74
681 689 1.279846 GTTCGGTTAATCCCCTCACCA 59.720 52.381 0.00 0.00 0.00 4.17
682 690 1.279846 TGTTCGGTTAATCCCCTCACC 59.720 52.381 0.00 0.00 0.00 4.02
686 694 1.409661 GCCATGTTCGGTTAATCCCCT 60.410 52.381 0.00 0.00 0.00 4.79
687 695 1.029681 GCCATGTTCGGTTAATCCCC 58.970 55.000 0.00 0.00 0.00 4.81
688 696 1.029681 GGCCATGTTCGGTTAATCCC 58.970 55.000 0.00 0.00 0.00 3.85
689 697 2.052782 AGGCCATGTTCGGTTAATCC 57.947 50.000 5.01 0.00 0.00 3.01
692 700 2.750712 GCTTTAGGCCATGTTCGGTTAA 59.249 45.455 5.01 0.00 34.27 2.01
693 701 2.026636 AGCTTTAGGCCATGTTCGGTTA 60.027 45.455 5.01 0.00 43.05 2.85
694 702 1.173913 GCTTTAGGCCATGTTCGGTT 58.826 50.000 5.01 0.00 34.27 4.44
696 704 1.463674 AAGCTTTAGGCCATGTTCGG 58.536 50.000 5.01 0.00 43.05 4.30
697 705 4.695217 TTAAAGCTTTAGGCCATGTTCG 57.305 40.909 17.91 0.00 43.05 3.95
698 706 7.334844 ACTATTAAAGCTTTAGGCCATGTTC 57.665 36.000 17.91 0.00 43.05 3.18
699 707 8.996651 ATACTATTAAAGCTTTAGGCCATGTT 57.003 30.769 17.91 4.63 43.05 2.71
701 709 9.066892 TCAATACTATTAAAGCTTTAGGCCATG 57.933 33.333 17.91 12.45 43.05 3.66
704 712 7.720074 AGGTCAATACTATTAAAGCTTTAGGCC 59.280 37.037 17.91 14.36 43.05 5.19
705 713 8.560374 CAGGTCAATACTATTAAAGCTTTAGGC 58.440 37.037 17.91 6.47 42.19 3.93
717 725 8.827677 GCTTCGTAATTTCAGGTCAATACTATT 58.172 33.333 0.00 0.00 0.00 1.73
718 726 7.441458 GGCTTCGTAATTTCAGGTCAATACTAT 59.559 37.037 0.00 0.00 0.00 2.12
745 753 4.669206 TTGTTCACACATTCATGGCTTT 57.331 36.364 0.00 0.00 31.06 3.51
786 794 1.636340 GAATCCGTGGTTCGATGCG 59.364 57.895 0.00 0.00 42.86 4.73
846 868 0.619255 TTATCAGGGGGCGGTGAGAA 60.619 55.000 0.00 0.00 0.00 2.87
865 887 2.368548 GTTTTGTTTTCAGGGCAGGGAT 59.631 45.455 0.00 0.00 0.00 3.85
871 893 4.209080 CGAATTGAGTTTTGTTTTCAGGGC 59.791 41.667 0.00 0.00 0.00 5.19
886 908 5.116180 TGTAATAAGGCCTGTCGAATTGAG 58.884 41.667 5.69 0.00 0.00 3.02
968 1011 0.476771 GGTGGAGGGTGGACTTTTCA 59.523 55.000 0.00 0.00 0.00 2.69
1170 1213 2.803670 CACACGTCGCGGTAGGTG 60.804 66.667 16.21 16.21 40.28 4.00
1260 1303 2.341101 GGCCCAGAAGACGTCGAGA 61.341 63.158 10.46 0.00 0.00 4.04
1437 1523 1.272258 CCCCAAAATCCGTACCAGGTT 60.272 52.381 0.00 0.00 0.00 3.50
1503 1598 7.613801 AGATGTAGAATATTCGCTCCTCTGTAT 59.386 37.037 9.78 0.00 0.00 2.29
1504 1599 6.943146 AGATGTAGAATATTCGCTCCTCTGTA 59.057 38.462 9.78 0.00 0.00 2.74
1505 1600 5.772672 AGATGTAGAATATTCGCTCCTCTGT 59.227 40.000 9.78 0.00 0.00 3.41
1655 1900 3.567164 GGACAATGCATCGGAAATCTCAT 59.433 43.478 0.00 0.00 0.00 2.90
1805 2118 3.489738 GGCCAAATGCTGCTAACATGTAG 60.490 47.826 0.00 0.00 40.92 2.74
1851 2164 7.407337 GTGCAACGAGAAATTAATTAGTAGGG 58.593 38.462 0.01 0.00 0.00 3.53
2029 2342 4.509737 GTGGTAGTCCTCGGCCGC 62.510 72.222 23.51 6.27 34.23 6.53
2169 2555 3.793559 ACGGTGTCCTTTATGATGCTAC 58.206 45.455 0.00 0.00 0.00 3.58
2201 2587 8.169910 GGGTTTGTTTATTGTAACAACAACAAC 58.830 33.333 11.08 13.96 45.00 3.32
2241 2630 2.054799 AGTGCCAGACCTCACCTTAAA 58.945 47.619 0.00 0.00 33.90 1.52
2319 2708 1.303643 GTGGAGGTTGGCAGAAGGG 60.304 63.158 0.00 0.00 0.00 3.95
2340 2729 1.006832 GTGGTGTGTGATGCGGATAC 58.993 55.000 0.00 0.00 0.00 2.24
2374 2763 3.561725 GGCTATCAAATCCTCAGTTTCGG 59.438 47.826 0.00 0.00 0.00 4.30
2391 2780 4.570663 GACGCTGTCGCCGGCTAT 62.571 66.667 26.68 0.00 41.05 2.97
2419 2808 3.893813 AGACGAGGATGATGATGATGTGA 59.106 43.478 0.00 0.00 0.00 3.58
2428 2817 3.549827 CGAGGAAGAAGACGAGGATGATG 60.550 52.174 0.00 0.00 0.00 3.07
2447 2836 3.708220 GAGCTCCCTTGCCGACGAG 62.708 68.421 0.87 0.00 0.00 4.18
2449 2838 4.821589 GGAGCTCCCTTGCCGACG 62.822 72.222 23.19 0.00 0.00 5.12
2479 2868 0.826672 AACGGGTCTTGACTCGGAGT 60.827 55.000 24.09 11.09 0.00 3.85
2488 2877 1.831389 CGACACTGCAACGGGTCTTG 61.831 60.000 6.76 0.00 0.00 3.02
2493 2882 2.279851 TGTCGACACTGCAACGGG 60.280 61.111 15.76 0.00 0.00 5.28
2498 2887 2.203082 AGCTCCTGTCGACACTGCA 61.203 57.895 24.75 7.74 0.00 4.41
2525 2914 1.004560 TCCAACTGCTGAAGAGGCG 60.005 57.895 0.00 0.00 0.00 5.52
2536 2925 0.673985 TCTGTCCACGACTCCAACTG 59.326 55.000 0.00 0.00 33.15 3.16
2540 2929 0.827925 AAGCTCTGTCCACGACTCCA 60.828 55.000 0.00 0.00 33.15 3.86
2560 2949 0.171455 GTCCACGACTCCTGCTACTG 59.829 60.000 0.00 0.00 0.00 2.74
2652 3041 2.124570 CCAAGCAGGGATGGGACG 60.125 66.667 0.00 0.00 32.87 4.79
2674 3063 4.159693 AGCGACATCTGTAACATCTACCAA 59.840 41.667 0.00 0.00 0.00 3.67
2686 3075 2.224281 TGACCAGAAAAGCGACATCTGT 60.224 45.455 9.78 0.00 39.10 3.41
2695 3084 1.282875 GCACGGTGACCAGAAAAGC 59.717 57.895 13.29 0.00 0.00 3.51
2715 3104 5.011738 ACCTAAAAGAGTCTCAACAATCCGA 59.988 40.000 1.94 0.00 0.00 4.55
2724 3113 7.540474 ACTGATAACACCTAAAAGAGTCTCA 57.460 36.000 1.94 0.00 0.00 3.27
2725 3114 7.546316 GGAACTGATAACACCTAAAAGAGTCTC 59.454 40.741 0.00 0.00 0.00 3.36
2729 3118 7.878127 TCAAGGAACTGATAACACCTAAAAGAG 59.122 37.037 0.00 0.00 40.86 2.85
2730 3119 7.741785 TCAAGGAACTGATAACACCTAAAAGA 58.258 34.615 0.00 0.00 40.86 2.52
2749 3138 1.472878 CTCGATGACCGTTCTCAAGGA 59.527 52.381 0.00 0.00 39.75 3.36
2774 3163 7.663905 AGATATTCGTAGAGACAATAGCACTCT 59.336 37.037 0.00 0.00 42.51 3.24
2777 3166 8.076781 TCAAGATATTCGTAGAGACAATAGCAC 58.923 37.037 0.00 0.00 38.43 4.40
2783 3351 7.582667 TGGATCAAGATATTCGTAGAGACAA 57.417 36.000 0.00 0.00 38.43 3.18
2788 3356 5.600898 TGGGTTGGATCAAGATATTCGTAGA 59.399 40.000 0.00 0.00 0.00 2.59
2793 3361 6.799512 CAAAGTGGGTTGGATCAAGATATTC 58.200 40.000 0.00 0.00 0.00 1.75
2794 3362 6.780457 CAAAGTGGGTTGGATCAAGATATT 57.220 37.500 0.00 0.00 0.00 1.28
2887 3455 0.608130 ATGACAACACGCAGAGGCTA 59.392 50.000 0.00 0.00 38.10 3.93
2900 3468 6.015519 CCAACCTTTTATGGAGTCAATGACAA 60.016 38.462 16.38 1.02 39.12 3.18
2936 3504 1.227497 CGCTCCATGAAGCTCTCCC 60.227 63.158 1.32 0.00 40.23 4.30
2958 3526 2.273449 CCACCCAGTGCATCCTCC 59.727 66.667 0.00 0.00 31.34 4.30
2963 3531 2.937689 AGAGCCCACCCAGTGCAT 60.938 61.111 0.00 0.00 31.34 3.96
2995 3563 4.277515 ACACATGAGTAGTCTGCAACAT 57.722 40.909 0.00 0.00 0.00 2.71
3020 3588 3.989787 CGGGCACAACCAAAGGGC 61.990 66.667 0.00 0.00 42.05 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.