Multiple sequence alignment - TraesCS2D01G339500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G339500 chr2D 100.000 3035 0 0 1 3035 433511328 433508294 0.000000e+00 5605
1 TraesCS2D01G339500 chr2D 72.738 862 163 52 1087 1909 22785842 22786670 1.100000e-54 224
2 TraesCS2D01G339500 chr2B 94.997 1539 55 4 640 2156 511280457 511278919 0.000000e+00 2396
3 TraesCS2D01G339500 chr2B 94.095 779 37 4 2260 3035 511278919 511278147 0.000000e+00 1175
4 TraesCS2D01G339500 chr2B 92.334 587 40 3 1 583 511281409 511280824 0.000000e+00 830
5 TraesCS2D01G339500 chr2B 75.628 915 187 32 1012 1911 245006021 245006914 3.620000e-114 422
6 TraesCS2D01G339500 chr2B 76.415 424 74 20 1502 1909 39158479 39158066 3.970000e-49 206
7 TraesCS2D01G339500 chr2A 93.795 1386 63 11 794 2173 553482872 553484240 0.000000e+00 2061
8 TraesCS2D01G339500 chr2A 95.758 778 20 5 2260 3035 553484410 553485176 0.000000e+00 1242
9 TraesCS2D01G339500 chr2A 89.394 396 40 2 1 395 766143158 766143552 5.840000e-137 497
10 TraesCS2D01G339500 chr2A 75.727 894 184 30 1033 1911 203002057 203002932 4.680000e-113 418
11 TraesCS2D01G339500 chr2A 76.077 418 80 17 1505 1912 24181447 24181040 1.850000e-47 200
12 TraesCS2D01G339500 chr2A 72.123 782 176 35 1152 1912 24277509 24276749 6.640000e-47 198
13 TraesCS2D01G339500 chr2A 82.857 175 15 3 577 748 553482637 553482799 3.150000e-30 143
14 TraesCS2D01G339500 chr5B 91.111 405 31 5 1 403 259544855 259545256 7.400000e-151 544
15 TraesCS2D01G339500 chr3D 90.609 394 36 1 1 394 551077676 551078068 3.470000e-144 521
16 TraesCS2D01G339500 chr5A 90.237 379 32 4 19 396 310870760 310870386 9.780000e-135 490
17 TraesCS2D01G339500 chr5A 88.889 396 43 1 1 396 477817778 477818172 1.260000e-133 486
18 TraesCS2D01G339500 chr4D 89.003 391 42 1 1 391 379695943 379696332 1.640000e-132 483
19 TraesCS2D01G339500 chr4D 77.612 335 54 13 2702 3030 94258544 94258863 1.860000e-42 183
20 TraesCS2D01G339500 chr1A 88.384 396 45 1 1 396 428207534 428207140 2.740000e-130 475
21 TraesCS2D01G339500 chr4A 88.089 403 43 5 1 400 59241516 59241116 9.850000e-130 473
22 TraesCS2D01G339500 chr4A 89.437 142 15 0 2892 3033 486643216 486643075 2.400000e-41 180
23 TraesCS2D01G339500 chr7A 74.492 886 179 40 1052 1909 136283147 136284013 1.040000e-89 340
24 TraesCS2D01G339500 chr4B 77.612 335 54 13 2702 3030 132852864 132853183 1.860000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G339500 chr2D 433508294 433511328 3034 True 5605.000000 5605 100.000000 1 3035 1 chr2D.!!$R1 3034
1 TraesCS2D01G339500 chr2D 22785842 22786670 828 False 224.000000 224 72.738000 1087 1909 1 chr2D.!!$F1 822
2 TraesCS2D01G339500 chr2B 511278147 511281409 3262 True 1467.000000 2396 93.808667 1 3035 3 chr2B.!!$R2 3034
3 TraesCS2D01G339500 chr2B 245006021 245006914 893 False 422.000000 422 75.628000 1012 1911 1 chr2B.!!$F1 899
4 TraesCS2D01G339500 chr2A 553482637 553485176 2539 False 1148.666667 2061 90.803333 577 3035 3 chr2A.!!$F3 2458
5 TraesCS2D01G339500 chr2A 203002057 203002932 875 False 418.000000 418 75.727000 1033 1911 1 chr2A.!!$F1 878
6 TraesCS2D01G339500 chr7A 136283147 136284013 866 False 340.000000 340 74.492000 1052 1909 1 chr7A.!!$F1 857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 223 0.171007 GTGGATGTTGTGCATTCGGG 59.829 55.0 0.0 0.0 38.06 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 2614 0.872388 GGGCGGCGATTAATAACCAG 59.128 55.0 12.98 2.07 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.581934 GCAAACAAAAGAAGGTGGGC 58.418 50.000 0.00 0.00 0.00 5.36
51 52 3.473923 ACAAAAGAAGGTGGGCAAATG 57.526 42.857 0.00 0.00 0.00 2.32
57 58 1.551883 GAAGGTGGGCAAATGCAAGAT 59.448 47.619 7.80 0.00 44.36 2.40
74 75 3.287867 AGATTGGTGTCATAGGCAAGG 57.712 47.619 0.00 0.00 0.00 3.61
76 77 0.676466 TTGGTGTCATAGGCAAGGCG 60.676 55.000 0.00 0.00 0.00 5.52
80 81 0.175760 TGTCATAGGCAAGGCGTCTC 59.824 55.000 0.00 0.00 0.00 3.36
82 83 0.461548 TCATAGGCAAGGCGTCTCTG 59.538 55.000 0.00 0.00 0.00 3.35
149 150 2.422479 CTGGAAGGTGCATGATGTCTTG 59.578 50.000 0.00 0.00 0.00 3.02
186 187 1.140852 TCGGGATTCACTTGGCATAGG 59.859 52.381 0.00 0.00 0.00 2.57
188 189 2.808202 CGGGATTCACTTGGCATAGGAG 60.808 54.545 0.00 0.00 0.00 3.69
189 190 2.225467 GGATTCACTTGGCATAGGAGC 58.775 52.381 0.00 0.00 0.00 4.70
221 222 0.880441 TGTGGATGTTGTGCATTCGG 59.120 50.000 0.00 0.00 38.06 4.30
222 223 0.171007 GTGGATGTTGTGCATTCGGG 59.829 55.000 0.00 0.00 38.06 5.14
288 289 2.035961 TGTGAGTAGTTGGTCTGTGCTC 59.964 50.000 0.00 0.00 0.00 4.26
305 306 4.453136 TGTGCTCCGTTTGTATAGGTTTTC 59.547 41.667 0.00 0.00 0.00 2.29
316 317 2.557920 TAGGTTTTCGCCCGGTTTTA 57.442 45.000 0.00 0.00 0.00 1.52
327 328 5.937187 TCGCCCGGTTTTACTTAAATTAAC 58.063 37.500 0.00 0.00 0.00 2.01
331 332 6.623486 CCCGGTTTTACTTAAATTAACTGGG 58.377 40.000 14.62 14.62 40.74 4.45
342 343 8.870116 ACTTAAATTAACTGGGCAATTCTCTTT 58.130 29.630 0.00 0.00 0.00 2.52
343 344 9.710900 CTTAAATTAACTGGGCAATTCTCTTTT 57.289 29.630 0.00 0.00 0.00 2.27
370 371 7.406553 TCTTAATTAATCGATGAGGCAAAACG 58.593 34.615 0.00 0.00 0.00 3.60
381 382 3.936585 GCAAAACGTTTGCCTCTGA 57.063 47.368 15.46 0.00 39.38 3.27
382 383 2.422276 GCAAAACGTTTGCCTCTGAT 57.578 45.000 15.46 0.00 39.38 2.90
384 385 2.726241 GCAAAACGTTTGCCTCTGATTC 59.274 45.455 15.46 0.00 39.38 2.52
385 386 3.308530 CAAAACGTTTGCCTCTGATTCC 58.691 45.455 15.46 0.00 0.00 3.01
386 387 2.270352 AACGTTTGCCTCTGATTCCA 57.730 45.000 0.00 0.00 0.00 3.53
387 388 2.270352 ACGTTTGCCTCTGATTCCAA 57.730 45.000 0.00 0.00 0.00 3.53
388 389 2.582052 ACGTTTGCCTCTGATTCCAAA 58.418 42.857 0.00 0.00 0.00 3.28
462 467 2.093216 GCTGCTAGCGTTCATGCTT 58.907 52.632 10.77 0.00 44.46 3.91
470 475 1.160137 GCGTTCATGCTTCACTCCTT 58.840 50.000 0.00 0.00 0.00 3.36
473 478 2.549754 CGTTCATGCTTCACTCCTTTGT 59.450 45.455 0.00 0.00 0.00 2.83
530 535 1.134401 CCCGATGCACTTGGACTGTAT 60.134 52.381 0.00 0.00 0.00 2.29
613 662 5.098663 TCTCAGTAAAACTCTATTGGGGGT 58.901 41.667 0.00 0.00 0.00 4.95
782 1100 6.759827 GCTACTAATATGTTTCCCTTTCGACA 59.240 38.462 0.00 0.00 0.00 4.35
786 1104 9.847224 ACTAATATGTTTCCCTTTCGACATTAT 57.153 29.630 0.00 0.00 34.76 1.28
828 1197 4.503817 GGGCAGCCAAAAGAAGAAGAAAAT 60.504 41.667 15.19 0.00 0.00 1.82
829 1198 4.687948 GGCAGCCAAAAGAAGAAGAAAATC 59.312 41.667 6.55 0.00 0.00 2.17
830 1199 4.687948 GCAGCCAAAAGAAGAAGAAAATCC 59.312 41.667 0.00 0.00 0.00 3.01
832 1201 6.294731 GCAGCCAAAAGAAGAAGAAAATCCTA 60.295 38.462 0.00 0.00 0.00 2.94
833 1202 7.087007 CAGCCAAAAGAAGAAGAAAATCCTAC 58.913 38.462 0.00 0.00 0.00 3.18
834 1203 7.007116 AGCCAAAAGAAGAAGAAAATCCTACT 58.993 34.615 0.00 0.00 0.00 2.57
835 1204 7.507277 AGCCAAAAGAAGAAGAAAATCCTACTT 59.493 33.333 0.00 0.00 0.00 2.24
943 1314 6.156949 TCCTGGATCTTGTAAAGCTCTACAAT 59.843 38.462 12.90 0.00 45.70 2.71
986 1357 2.359850 GCCGTCACATCTGGGCAA 60.360 61.111 0.00 0.00 44.91 4.52
1452 1884 0.826256 ACCAGTACGTCCTGCTCACA 60.826 55.000 2.00 0.00 0.00 3.58
2161 2608 6.062434 ACGAAAATGTACCGAAACAAATCA 57.938 33.333 0.00 0.00 32.02 2.57
2167 2614 5.554822 TGTACCGAAACAAATCAATAGCC 57.445 39.130 0.00 0.00 0.00 3.93
2173 2620 5.124776 CCGAAACAAATCAATAGCCTGGTTA 59.875 40.000 0.00 0.00 0.00 2.85
2174 2621 6.183360 CCGAAACAAATCAATAGCCTGGTTAT 60.183 38.462 0.00 0.00 0.00 1.89
2176 2623 8.402472 CGAAACAAATCAATAGCCTGGTTATTA 58.598 33.333 14.39 5.52 0.00 0.98
2180 2627 8.567948 ACAAATCAATAGCCTGGTTATTAATCG 58.432 33.333 14.39 5.27 0.00 3.34
2181 2628 6.743575 ATCAATAGCCTGGTTATTAATCGC 57.256 37.500 14.39 0.00 0.00 4.58
2182 2629 5.001232 TCAATAGCCTGGTTATTAATCGCC 58.999 41.667 14.39 0.00 0.00 5.54
2183 2630 1.878953 AGCCTGGTTATTAATCGCCG 58.121 50.000 0.00 0.00 0.00 6.46
2184 2631 0.237498 GCCTGGTTATTAATCGCCGC 59.763 55.000 0.00 0.00 0.00 6.53
2185 2632 0.872388 CCTGGTTATTAATCGCCGCC 59.128 55.000 0.00 0.00 0.00 6.13
2186 2633 0.872388 CTGGTTATTAATCGCCGCCC 59.128 55.000 0.00 0.00 0.00 6.13
2187 2634 0.881159 TGGTTATTAATCGCCGCCCG 60.881 55.000 0.00 0.00 38.61 6.13
2230 2677 2.357034 TCAAGCTGACGGCCGTTC 60.357 61.111 34.65 24.51 43.05 3.95
2231 2678 3.777925 CAAGCTGACGGCCGTTCG 61.778 66.667 34.65 25.90 43.05 3.95
2232 2679 4.295119 AAGCTGACGGCCGTTCGT 62.295 61.111 34.65 19.24 46.83 3.85
2245 2755 1.485943 GTTCGTCGCCGTCACTTTC 59.514 57.895 0.00 0.00 35.01 2.62
2249 2759 0.511221 CGTCGCCGTCACTTTCAAAT 59.489 50.000 0.00 0.00 0.00 2.32
2256 2766 3.868754 GCCGTCACTTTCAAATAGAGGGT 60.869 47.826 10.60 0.00 36.80 4.34
2257 2767 3.933332 CCGTCACTTTCAAATAGAGGGTC 59.067 47.826 0.00 0.00 31.52 4.46
2258 2768 3.933332 CGTCACTTTCAAATAGAGGGTCC 59.067 47.826 0.00 0.00 0.00 4.46
2288 2818 2.550830 ACTCGCTTCTCACACCAATT 57.449 45.000 0.00 0.00 0.00 2.32
2370 2900 3.763360 CACCAGCATAGAAATGTCCCAAA 59.237 43.478 0.00 0.00 35.38 3.28
2415 2947 3.899052 ATGTCCCAATCCAAATGCTTG 57.101 42.857 0.00 0.00 0.00 4.01
2436 2968 7.495279 TGCTTGGAATCCATGTATTTAAAATGC 59.505 33.333 15.35 0.00 31.53 3.56
2500 3032 1.292061 TCGTTCCTCAACACCAAACG 58.708 50.000 0.00 0.00 42.87 3.60
2521 3053 1.065551 GCTGCCGAATGTTCCATAACC 59.934 52.381 0.00 0.00 34.49 2.85
2522 3054 2.643551 CTGCCGAATGTTCCATAACCT 58.356 47.619 0.00 0.00 34.49 3.50
2523 3055 2.355756 CTGCCGAATGTTCCATAACCTG 59.644 50.000 0.00 0.00 34.49 4.00
2524 3056 2.026729 TGCCGAATGTTCCATAACCTGA 60.027 45.455 0.00 0.00 34.49 3.86
2525 3057 3.013921 GCCGAATGTTCCATAACCTGAA 58.986 45.455 0.00 0.00 34.49 3.02
2582 3119 7.065085 CAGTACAGTACATTTCAAATCTCCCAG 59.935 40.741 13.37 0.00 0.00 4.45
2631 3168 2.222953 CCGCGATGCAAAAACTAGGTAC 60.223 50.000 8.23 0.00 0.00 3.34
2638 3175 2.486592 GCAAAAACTAGGTACCACGCAT 59.513 45.455 15.94 0.00 0.00 4.73
2667 3204 3.054728 TCAAAACACCAGTTCTCAGTCCA 60.055 43.478 0.00 0.00 36.84 4.02
2675 3212 0.741221 GTTCTCAGTCCATCACCGCC 60.741 60.000 0.00 0.00 0.00 6.13
2683 3220 2.501128 CATCACCGCCGATCACCT 59.499 61.111 0.00 0.00 0.00 4.00
2725 3263 4.409901 TGAATACTTCATCTCATGGCCTCA 59.590 41.667 3.32 0.00 34.08 3.86
2867 3405 2.281484 GGTGTTCTCCGCCTTGCA 60.281 61.111 0.00 0.00 40.81 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.977772 TGCCCACCTTCTTTTGTTTG 57.022 45.000 0.00 0.00 0.00 2.93
46 47 5.345702 CCTATGACACCAATCTTGCATTTG 58.654 41.667 0.00 0.00 0.00 2.32
51 52 2.368439 TGCCTATGACACCAATCTTGC 58.632 47.619 0.00 0.00 0.00 4.01
57 58 0.676466 CGCCTTGCCTATGACACCAA 60.676 55.000 0.00 0.00 0.00 3.67
74 75 0.445436 CATCAAGCAACCAGAGACGC 59.555 55.000 0.00 0.00 0.00 5.19
76 77 2.479566 TCCATCAAGCAACCAGAGAC 57.520 50.000 0.00 0.00 0.00 3.36
80 81 3.552875 AGATCATCCATCAAGCAACCAG 58.447 45.455 0.00 0.00 33.29 4.00
82 83 3.003068 CGAAGATCATCCATCAAGCAACC 59.997 47.826 0.00 0.00 33.29 3.77
128 129 2.414994 AGACATCATGCACCTTCCAG 57.585 50.000 0.00 0.00 0.00 3.86
149 150 1.129326 CGACAAGAACACCTCGACAC 58.871 55.000 0.00 0.00 0.00 3.67
186 187 1.227853 ACAAACCCCGACACTGCTC 60.228 57.895 0.00 0.00 0.00 4.26
188 189 2.551912 CCACAAACCCCGACACTGC 61.552 63.158 0.00 0.00 0.00 4.40
189 190 0.250727 ATCCACAAACCCCGACACTG 60.251 55.000 0.00 0.00 0.00 3.66
243 244 1.608590 CAAGAAACTCCACAACCGCAT 59.391 47.619 0.00 0.00 0.00 4.73
253 254 2.508526 ACTCACATGGCAAGAAACTCC 58.491 47.619 0.00 0.00 0.00 3.85
288 289 2.096335 GGGCGAAAACCTATACAAACGG 59.904 50.000 0.00 0.00 0.00 4.44
305 306 5.796437 CAGTTAATTTAAGTAAAACCGGGCG 59.204 40.000 6.32 0.00 0.00 6.13
316 317 8.422577 AAGAGAATTGCCCAGTTAATTTAAGT 57.577 30.769 0.00 0.00 0.00 2.24
343 344 9.567848 GTTTTGCCTCATCGATTAATTAAGAAA 57.432 29.630 3.94 0.00 0.00 2.52
407 412 1.069906 CCGCTTGCAGAACTTGTACAC 60.070 52.381 0.00 0.00 0.00 2.90
462 467 0.981183 ACGCCCATACAAAGGAGTGA 59.019 50.000 0.00 0.00 34.62 3.41
470 475 3.306364 CCCAAATTCAAACGCCCATACAA 60.306 43.478 0.00 0.00 0.00 2.41
473 478 1.827969 CCCCAAATTCAAACGCCCATA 59.172 47.619 0.00 0.00 0.00 2.74
543 548 9.820725 TTTGCATTATTGGAATAAGGATTTCTG 57.179 29.630 7.74 0.00 35.34 3.02
550 555 5.759763 GCCCTTTTGCATTATTGGAATAAGG 59.240 40.000 16.62 16.62 38.98 2.69
553 558 7.667575 TTAGCCCTTTTGCATTATTGGAATA 57.332 32.000 0.00 0.00 32.82 1.75
613 662 1.299648 CAACTCGGGGAGCCATGAA 59.700 57.895 0.00 0.00 32.04 2.57
674 992 6.098124 TGGATTGAAACAAACAAGAATGGAGT 59.902 34.615 0.00 0.00 0.00 3.85
782 1100 6.994496 CCCCGCTGTCATCATCATTATATAAT 59.006 38.462 1.91 1.91 0.00 1.28
785 1103 4.774124 CCCCGCTGTCATCATCATTATAT 58.226 43.478 0.00 0.00 0.00 0.86
786 1104 3.619733 GCCCCGCTGTCATCATCATTATA 60.620 47.826 0.00 0.00 0.00 0.98
787 1105 2.877300 GCCCCGCTGTCATCATCATTAT 60.877 50.000 0.00 0.00 0.00 1.28
789 1107 0.820891 GCCCCGCTGTCATCATCATT 60.821 55.000 0.00 0.00 0.00 2.57
790 1108 1.228063 GCCCCGCTGTCATCATCAT 60.228 57.895 0.00 0.00 0.00 2.45
828 1197 6.493802 AGATGGAAGCACGATAATAAGTAGGA 59.506 38.462 0.00 0.00 0.00 2.94
829 1198 6.587990 CAGATGGAAGCACGATAATAAGTAGG 59.412 42.308 0.00 0.00 0.00 3.18
830 1199 6.090088 GCAGATGGAAGCACGATAATAAGTAG 59.910 42.308 0.00 0.00 0.00 2.57
832 1201 4.752101 GCAGATGGAAGCACGATAATAAGT 59.248 41.667 0.00 0.00 0.00 2.24
833 1202 4.153117 GGCAGATGGAAGCACGATAATAAG 59.847 45.833 0.00 0.00 0.00 1.73
834 1203 4.065088 GGCAGATGGAAGCACGATAATAA 58.935 43.478 0.00 0.00 0.00 1.40
835 1204 3.070878 TGGCAGATGGAAGCACGATAATA 59.929 43.478 0.00 0.00 0.00 0.98
934 1305 1.832411 GCGCCGCCTTATTGTAGAGC 61.832 60.000 0.00 0.00 0.00 4.09
943 1314 2.202650 GTTACTCGCGCCGCCTTA 60.203 61.111 2.28 0.00 0.00 2.69
1142 1513 1.838073 GAAGGCGAAGGGGAGGAACA 61.838 60.000 0.00 0.00 0.00 3.18
1767 2205 3.490759 CCGTGCAGCGCGAAGAAT 61.491 61.111 29.62 0.00 39.94 2.40
1929 2376 1.078848 GGCGATCACCAGCTTGTCT 60.079 57.895 0.00 0.00 0.00 3.41
2130 2577 8.554528 TGTTTCGGTACATTTTCGTAACAAATA 58.445 29.630 9.82 0.00 39.71 1.40
2161 2608 4.000988 CGGCGATTAATAACCAGGCTATT 58.999 43.478 0.00 0.69 0.00 1.73
2167 2614 0.872388 GGGCGGCGATTAATAACCAG 59.128 55.000 12.98 2.07 0.00 4.00
2173 2620 2.030562 CCTCGGGCGGCGATTAAT 59.969 61.111 12.98 0.00 0.00 1.40
2174 2621 4.230002 CCCTCGGGCGGCGATTAA 62.230 66.667 12.98 0.00 0.00 1.40
2205 2652 3.414700 GTCAGCTTGACGCCACCG 61.415 66.667 0.00 0.00 37.67 4.94
2212 2659 2.665185 AACGGCCGTCAGCTTGAC 60.665 61.111 34.29 6.31 43.65 3.18
2213 2660 2.357034 GAACGGCCGTCAGCTTGA 60.357 61.111 34.29 0.00 43.05 3.02
2214 2661 3.777925 CGAACGGCCGTCAGCTTG 61.778 66.667 34.29 16.36 43.05 4.01
2231 2678 2.991190 TCTATTTGAAAGTGACGGCGAC 59.009 45.455 16.62 8.59 0.00 5.19
2232 2679 3.250744 CTCTATTTGAAAGTGACGGCGA 58.749 45.455 16.62 0.00 0.00 5.54
2234 2681 2.678336 CCCTCTATTTGAAAGTGACGGC 59.322 50.000 0.00 0.00 0.00 5.68
2235 2682 3.933332 GACCCTCTATTTGAAAGTGACGG 59.067 47.826 0.00 0.00 0.00 4.79
2236 2683 3.933332 GGACCCTCTATTTGAAAGTGACG 59.067 47.826 0.00 0.00 0.00 4.35
2237 2684 4.019231 AGGGACCCTCTATTTGAAAGTGAC 60.019 45.833 7.44 0.00 0.00 3.67
2239 2686 4.518249 GAGGGACCCTCTATTTGAAAGTG 58.482 47.826 30.51 0.00 46.41 3.16
2240 2687 4.846168 GAGGGACCCTCTATTTGAAAGT 57.154 45.455 30.51 0.00 46.41 2.66
2256 2766 1.471119 AGCGAGTAATGAACGAGGGA 58.529 50.000 0.00 0.00 0.00 4.20
2257 2767 2.159226 AGAAGCGAGTAATGAACGAGGG 60.159 50.000 0.00 0.00 0.00 4.30
2258 2768 3.109619 GAGAAGCGAGTAATGAACGAGG 58.890 50.000 0.00 0.00 0.00 4.63
2265 2795 2.959516 TGGTGTGAGAAGCGAGTAATG 58.040 47.619 0.00 0.00 0.00 1.90
2288 2818 5.184287 TGGTACTGTCAATCATCGTCAGTTA 59.816 40.000 0.00 0.00 39.54 2.24
2521 3053 7.048629 AGATGAGGAGTATGTACATGTTCAG 57.951 40.000 18.81 0.00 0.00 3.02
2522 3054 7.423844 AAGATGAGGAGTATGTACATGTTCA 57.576 36.000 18.81 5.43 0.00 3.18
2523 3055 8.723942 AAAAGATGAGGAGTATGTACATGTTC 57.276 34.615 18.81 14.29 0.00 3.18
2524 3056 8.321353 TGAAAAGATGAGGAGTATGTACATGTT 58.679 33.333 18.81 6.14 0.00 2.71
2525 3057 7.851228 TGAAAAGATGAGGAGTATGTACATGT 58.149 34.615 18.81 2.69 0.00 3.21
2582 3119 0.890683 AGGTGCTTGTTTGCCTATGC 59.109 50.000 0.00 0.00 38.26 3.14
2638 3175 1.034838 ACTGGTGTTTTGAGCGCCAA 61.035 50.000 2.29 5.36 44.67 4.52
2667 3204 1.144057 GAAGGTGATCGGCGGTGAT 59.856 57.895 7.21 0.00 0.00 3.06
2675 3212 2.202932 CCCTGGCGAAGGTGATCG 60.203 66.667 3.60 0.00 45.78 3.69
2725 3263 2.023673 CGAGAGAGACATCAAGAGGCT 58.976 52.381 0.00 0.00 0.00 4.58
2776 3314 0.830866 AACCGGAAGAGGAAGGACGT 60.831 55.000 9.46 0.00 34.73 4.34
2867 3405 0.321653 GGATCACCAGAACACGGCTT 60.322 55.000 0.00 0.00 35.97 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.