Multiple sequence alignment - TraesCS2D01G339300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G339300 chr2D 100.000 9730 0 0 1 9730 433222240 433212511 0.000000e+00 17969.0
1 TraesCS2D01G339300 chr2D 91.723 592 44 4 8189 8778 245682265 245681677 0.000000e+00 817.0
2 TraesCS2D01G339300 chr2D 84.530 627 67 16 9110 9730 447243777 447244379 2.340000e-165 593.0
3 TraesCS2D01G339300 chr2D 89.372 207 20 2 8881 9086 447243582 447243787 9.690000e-65 259.0
4 TraesCS2D01G339300 chr5D 95.150 3629 133 17 3240 6846 34271617 34275224 0.000000e+00 5686.0
5 TraesCS2D01G339300 chr5D 95.556 270 7 2 2763 3027 34270964 34271233 2.510000e-115 427.0
6 TraesCS2D01G339300 chr5D 92.000 225 14 4 2544 2766 34270686 34270908 7.340000e-81 313.0
7 TraesCS2D01G339300 chr5D 95.588 136 6 0 3102 3237 34271420 34271555 1.650000e-52 219.0
8 TraesCS2D01G339300 chr5D 86.735 98 5 2 4871 4968 457781315 457781404 1.730000e-17 102.0
9 TraesCS2D01G339300 chr1A 94.755 2269 83 16 3240 5495 452022410 452024655 0.000000e+00 3498.0
10 TraesCS2D01G339300 chr1A 86.115 749 89 8 5400 6136 498661063 498661808 0.000000e+00 793.0
11 TraesCS2D01G339300 chr1A 95.218 481 17 3 2763 3237 452021843 452022323 0.000000e+00 756.0
12 TraesCS2D01G339300 chr1A 80.815 417 48 13 2764 3163 545995346 545995747 2.050000e-76 298.0
13 TraesCS2D01G339300 chr1A 94.366 142 6 2 2559 2700 452021603 452021742 5.920000e-52 217.0
14 TraesCS2D01G339300 chr1A 80.899 267 44 5 3085 3351 584300688 584300429 4.610000e-48 204.0
15 TraesCS2D01G339300 chr1A 88.889 126 13 1 2763 2887 584300814 584300689 4.710000e-33 154.0
16 TraesCS2D01G339300 chr1A 80.795 151 21 6 1503 1649 50962395 50962541 2.870000e-20 111.0
17 TraesCS2D01G339300 chr1A 82.114 123 20 2 7627 7748 166851394 166851515 4.810000e-18 104.0
18 TraesCS2D01G339300 chr1A 93.548 62 4 0 6280 6341 500983418 500983357 1.040000e-14 93.5
19 TraesCS2D01G339300 chr1A 95.000 40 2 0 2236 2275 545994536 545994575 8.160000e-06 63.9
20 TraesCS2D01G339300 chr4A 94.381 2278 92 15 3240 5506 41899491 41897239 0.000000e+00 3465.0
21 TraesCS2D01G339300 chr4A 93.065 620 38 2 9111 9730 673475053 673475667 0.000000e+00 902.0
22 TraesCS2D01G339300 chr4A 92.903 620 39 2 9111 9730 731204360 731203746 0.000000e+00 896.0
23 TraesCS2D01G339300 chr4A 94.398 482 17 4 2763 3237 41900067 41899589 0.000000e+00 732.0
24 TraesCS2D01G339300 chr4A 88.525 549 57 4 5631 6176 37972230 37972775 0.000000e+00 660.0
25 TraesCS2D01G339300 chr4A 93.750 208 11 2 2559 2766 41900328 41900123 2.640000e-80 311.0
26 TraesCS2D01G339300 chr4A 92.788 208 12 3 8880 9086 673474858 673475063 2.050000e-76 298.0
27 TraesCS2D01G339300 chr4A 91.304 207 14 4 8881 9085 731204555 731204351 7.440000e-71 279.0
28 TraesCS2D01G339300 chr4A 88.398 181 16 3 9491 9671 673475822 673475997 7.650000e-51 213.0
29 TraesCS2D01G339300 chr4A 87.059 85 11 0 3494 3578 683500056 683500140 8.040000e-16 97.1
30 TraesCS2D01G339300 chr4A 100.000 29 0 0 2236 2264 559508000 559507972 5.000000e-03 54.7
31 TraesCS2D01G339300 chr4A 100.000 29 0 0 2236 2264 672245321 672245293 5.000000e-03 54.7
32 TraesCS2D01G339300 chr7A 94.251 2122 92 11 4751 6849 200008399 200006285 0.000000e+00 3216.0
33 TraesCS2D01G339300 chr7A 96.005 801 27 2 3966 4764 200010067 200009270 0.000000e+00 1297.0
34 TraesCS2D01G339300 chr7A 90.364 851 39 11 6022 6849 8459081 8458251 0.000000e+00 1077.0
35 TraesCS2D01G339300 chr7A 92.066 731 29 13 3240 3969 200010891 200010189 0.000000e+00 1002.0
36 TraesCS2D01G339300 chr7A 93.065 620 38 2 9111 9730 709993232 709993846 0.000000e+00 902.0
37 TraesCS2D01G339300 chr7A 85.411 802 88 10 5400 6176 188900862 188901659 0.000000e+00 806.0
38 TraesCS2D01G339300 chr7A 95.208 480 18 2 2763 3237 200011468 200010989 0.000000e+00 754.0
39 TraesCS2D01G339300 chr7A 91.908 346 19 4 6746 7091 130575577 130575241 8.840000e-130 475.0
40 TraesCS2D01G339300 chr7A 95.050 202 7 2 2565 2766 200011722 200011524 2.040000e-81 315.0
41 TraesCS2D01G339300 chr7A 95.050 202 7 2 2565 2766 200019084 200019282 2.040000e-81 315.0
42 TraesCS2D01G339300 chr7A 92.202 218 15 2 8876 9092 709993032 709993248 3.410000e-79 307.0
43 TraesCS2D01G339300 chr7A 96.914 162 5 0 2763 2924 200019338 200019499 1.250000e-68 272.0
44 TraesCS2D01G339300 chr7A 91.608 143 11 1 8878 9019 709998226 709998084 7.710000e-46 196.0
45 TraesCS2D01G339300 chr7A 83.465 127 9 8 5467 5583 3968277 3968153 3.720000e-19 108.0
46 TraesCS2D01G339300 chr7A 80.488 123 22 1 7632 7752 198187854 198187976 1.040000e-14 93.5
47 TraesCS2D01G339300 chr2A 97.809 1643 26 5 2294 3931 554013189 554014826 0.000000e+00 2826.0
48 TraesCS2D01G339300 chr2A 96.266 1714 49 10 540 2247 554011487 554013191 0.000000e+00 2796.0
49 TraesCS2D01G339300 chr2A 95.811 1504 31 9 7396 8880 554018454 554019944 0.000000e+00 2399.0
50 TraesCS2D01G339300 chr2A 97.225 1189 16 9 4786 5966 554016131 554017310 0.000000e+00 1997.0
51 TraesCS2D01G339300 chr2A 95.365 1165 39 2 6015 7177 554017309 554018460 0.000000e+00 1838.0
52 TraesCS2D01G339300 chr2A 98.064 878 13 2 3914 4787 554015016 554015893 0.000000e+00 1524.0
53 TraesCS2D01G339300 chr2A 90.326 858 37 23 6017 6849 654741441 654740605 0.000000e+00 1083.0
54 TraesCS2D01G339300 chr2A 90.364 851 39 11 6022 6849 166245747 166244917 0.000000e+00 1077.0
55 TraesCS2D01G339300 chr2A 91.312 587 40 6 6621 7198 666122260 666121676 0.000000e+00 791.0
56 TraesCS2D01G339300 chr2A 92.491 546 36 4 1 545 554010402 554010943 0.000000e+00 776.0
57 TraesCS2D01G339300 chr2A 87.755 98 10 2 1565 1660 678362944 678363041 7.990000e-21 113.0
58 TraesCS2D01G339300 chr6B 91.712 1110 71 10 6107 7198 56990283 56991389 0.000000e+00 1520.0
59 TraesCS2D01G339300 chr6B 94.194 620 31 3 9111 9730 480388448 480389062 0.000000e+00 941.0
60 TraesCS2D01G339300 chr6B 95.833 216 7 2 8870 9085 480388244 480388457 2.010000e-91 348.0
61 TraesCS2D01G339300 chr6B 91.860 86 6 1 1568 1653 502316318 502316234 1.720000e-22 119.0
62 TraesCS2D01G339300 chr6B 100.000 29 0 0 2236 2264 484102091 484102119 5.000000e-03 54.7
63 TraesCS2D01G339300 chr2B 90.338 859 36 24 6017 6849 521512868 521512031 0.000000e+00 1083.0
64 TraesCS2D01G339300 chr2B 87.500 824 66 12 1072 1883 310495843 310496641 0.000000e+00 917.0
65 TraesCS2D01G339300 chr2B 94.454 559 26 3 9172 9730 761997996 761997443 0.000000e+00 856.0
66 TraesCS2D01G339300 chr2B 86.846 631 74 8 5593 6220 63276244 63275620 0.000000e+00 697.0
67 TraesCS2D01G339300 chr2B 93.853 423 17 4 8189 8610 310501108 310501522 6.410000e-176 628.0
68 TraesCS2D01G339300 chr2B 90.476 441 20 7 7753 8191 310498384 310498804 6.600000e-156 562.0
69 TraesCS2D01G339300 chr2B 96.714 213 7 0 8879 9091 761998222 761998010 1.200000e-93 355.0
70 TraesCS2D01G339300 chr2B 91.630 227 18 1 2004 2229 310498150 310498376 7.340000e-81 313.0
71 TraesCS2D01G339300 chr2B 80.815 417 49 13 2764 3163 178764190 178763788 2.050000e-76 298.0
72 TraesCS2D01G339300 chr2B 97.619 84 2 0 1930 2013 310496770 310496853 2.830000e-30 145.0
73 TraesCS2D01G339300 chr2B 84.615 143 22 0 1 143 310461992 310462134 1.020000e-29 143.0
74 TraesCS2D01G339300 chr2B 97.500 40 1 0 2236 2275 178765000 178764961 1.750000e-07 69.4
75 TraesCS2D01G339300 chr7D 93.065 620 38 2 9111 9730 7477476 7476862 0.000000e+00 902.0
76 TraesCS2D01G339300 chr7D 96.066 483 11 3 2763 3237 84894164 84893682 0.000000e+00 780.0
77 TraesCS2D01G339300 chr7D 95.050 202 5 3 2565 2766 84894405 84894209 7.340000e-81 313.0
78 TraesCS2D01G339300 chr7D 87.054 224 18 3 8879 9092 7477682 7477460 9.760000e-60 243.0
79 TraesCS2D01G339300 chr7D 84.932 146 6 8 3240 3385 84893584 84893455 6.130000e-27 134.0
80 TraesCS2D01G339300 chr6A 85.459 839 97 12 5400 6224 21404733 21403906 0.000000e+00 850.0
81 TraesCS2D01G339300 chr6A 91.638 586 39 7 6621 7198 182495964 182495381 0.000000e+00 802.0
82 TraesCS2D01G339300 chr6A 92.308 65 3 2 7689 7752 87211471 87211408 3.740000e-14 91.6
83 TraesCS2D01G339300 chr6A 88.235 68 6 2 7689 7755 21448414 21448348 8.100000e-11 80.5
84 TraesCS2D01G339300 chr3A 92.771 581 37 4 6621 7198 734758443 734757865 0.000000e+00 835.0
85 TraesCS2D01G339300 chr3A 86.683 398 45 3 9116 9513 148647761 148647372 1.500000e-117 435.0
86 TraesCS2D01G339300 chr3A 83.898 118 19 0 7631 7748 303284283 303284400 7.990000e-21 113.0
87 TraesCS2D01G339300 chr7B 91.966 585 31 7 6621 7198 293125495 293124920 0.000000e+00 806.0
88 TraesCS2D01G339300 chr7B 81.818 165 11 12 1507 1653 505937314 505937477 4.770000e-23 121.0
89 TraesCS2D01G339300 chr3D 85.316 790 99 9 5400 6176 556072925 556073710 0.000000e+00 800.0
90 TraesCS2D01G339300 chr3D 83.732 627 72 17 9111 9730 118421181 118420578 5.100000e-157 566.0
91 TraesCS2D01G339300 chr3D 91.608 143 11 1 8878 9019 118416331 118416473 7.710000e-46 196.0
92 TraesCS2D01G339300 chr3D 82.500 200 35 0 15 214 303589110 303588911 1.000000e-39 176.0
93 TraesCS2D01G339300 chr3D 87.288 118 15 0 7631 7748 263228260 263228377 1.700000e-27 135.0
94 TraesCS2D01G339300 chr3D 84.483 116 16 2 7631 7745 162839203 162839089 7.990000e-21 113.0
95 TraesCS2D01G339300 chr3D 83.621 116 17 2 7631 7745 162835907 162835793 3.720000e-19 108.0
96 TraesCS2D01G339300 chr4B 91.482 587 39 7 6621 7198 671787680 671787096 0.000000e+00 797.0
97 TraesCS2D01G339300 chr4B 78.892 379 74 4 3 376 44933833 44933456 1.620000e-62 252.0
98 TraesCS2D01G339300 chr4B 78.495 279 40 14 3064 3329 600670561 600670832 2.170000e-36 165.0
99 TraesCS2D01G339300 chr4B 77.872 235 30 14 3362 3578 600671155 600671385 1.030000e-24 126.0
100 TraesCS2D01G339300 chr1B 86.688 631 77 6 5593 6220 661033975 661033349 0.000000e+00 693.0
101 TraesCS2D01G339300 chr1B 87.981 208 15 6 8879 9084 14950340 14950141 4.540000e-58 237.0
102 TraesCS2D01G339300 chr1B 100.000 29 0 0 2236 2264 12493421 12493449 5.000000e-03 54.7
103 TraesCS2D01G339300 chr1B 100.000 29 0 0 2236 2264 12563380 12563408 5.000000e-03 54.7
104 TraesCS2D01G339300 chr1B 90.476 42 2 2 2224 2264 681713071 681713031 5.000000e-03 54.7
105 TraesCS2D01G339300 chr5A 91.733 375 27 4 6621 6994 475843727 475843356 1.450000e-142 518.0
106 TraesCS2D01G339300 chr5A 93.069 202 11 3 2763 2962 25098225 25098425 9.560000e-75 292.0
107 TraesCS2D01G339300 chr5A 91.866 209 11 5 7000 7205 475834722 475834517 4.450000e-73 287.0
108 TraesCS2D01G339300 chr5A 85.638 188 12 7 2565 2749 25096914 25097089 6.000000e-42 183.0
109 TraesCS2D01G339300 chr5A 100.000 29 0 0 2236 2264 518246529 518246501 5.000000e-03 54.7
110 TraesCS2D01G339300 chr1D 84.043 376 43 10 6971 7330 209729492 209729118 7.230000e-91 346.0
111 TraesCS2D01G339300 chr3B 83.673 147 12 7 1506 1643 475993694 475993837 2.850000e-25 128.0
112 TraesCS2D01G339300 chr6D 92.135 89 6 1 1565 1653 320698153 320698240 3.690000e-24 124.0
113 TraesCS2D01G339300 chr6D 81.633 147 22 4 1504 1647 153810652 153810796 6.170000e-22 117.0
114 TraesCS2D01G339300 chr6D 97.222 36 1 0 1504 1539 386931645 386931610 2.930000e-05 62.1
115 TraesCS2D01G339300 chr4D 86.607 112 13 2 3362 3472 476315722 476315832 1.330000e-23 122.0
116 TraesCS2D01G339300 chr4D 89.286 56 6 0 3523 3578 476315897 476315952 4.880000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G339300 chr2D 433212511 433222240 9729 True 17969.000000 17969 100.000000 1 9730 1 chr2D.!!$R2 9729
1 TraesCS2D01G339300 chr2D 245681677 245682265 588 True 817.000000 817 91.723000 8189 8778 1 chr2D.!!$R1 589
2 TraesCS2D01G339300 chr2D 447243582 447244379 797 False 426.000000 593 86.951000 8881 9730 2 chr2D.!!$F1 849
3 TraesCS2D01G339300 chr5D 34270686 34275224 4538 False 1661.250000 5686 94.573500 2544 6846 4 chr5D.!!$F2 4302
4 TraesCS2D01G339300 chr1A 452021603 452024655 3052 False 1490.333333 3498 94.779667 2559 5495 3 chr1A.!!$F4 2936
5 TraesCS2D01G339300 chr1A 498661063 498661808 745 False 793.000000 793 86.115000 5400 6136 1 chr1A.!!$F3 736
6 TraesCS2D01G339300 chr4A 41897239 41900328 3089 True 1502.666667 3465 94.176333 2559 5506 3 chr4A.!!$R3 2947
7 TraesCS2D01G339300 chr4A 37972230 37972775 545 False 660.000000 660 88.525000 5631 6176 1 chr4A.!!$F1 545
8 TraesCS2D01G339300 chr4A 731203746 731204555 809 True 587.500000 896 92.103500 8881 9730 2 chr4A.!!$R4 849
9 TraesCS2D01G339300 chr4A 673474858 673475997 1139 False 471.000000 902 91.417000 8880 9730 3 chr4A.!!$F3 850
10 TraesCS2D01G339300 chr7A 200006285 200011722 5437 True 1316.800000 3216 94.516000 2565 6849 5 chr7A.!!$R5 4284
11 TraesCS2D01G339300 chr7A 8458251 8459081 830 True 1077.000000 1077 90.364000 6022 6849 1 chr7A.!!$R2 827
12 TraesCS2D01G339300 chr7A 188900862 188901659 797 False 806.000000 806 85.411000 5400 6176 1 chr7A.!!$F1 776
13 TraesCS2D01G339300 chr7A 709993032 709993846 814 False 604.500000 902 92.633500 8876 9730 2 chr7A.!!$F4 854
14 TraesCS2D01G339300 chr2A 554010402 554019944 9542 False 2022.285714 2826 96.147286 1 8880 7 chr2A.!!$F2 8879
15 TraesCS2D01G339300 chr2A 654740605 654741441 836 True 1083.000000 1083 90.326000 6017 6849 1 chr2A.!!$R2 832
16 TraesCS2D01G339300 chr2A 166244917 166245747 830 True 1077.000000 1077 90.364000 6022 6849 1 chr2A.!!$R1 827
17 TraesCS2D01G339300 chr2A 666121676 666122260 584 True 791.000000 791 91.312000 6621 7198 1 chr2A.!!$R3 577
18 TraesCS2D01G339300 chr6B 56990283 56991389 1106 False 1520.000000 1520 91.712000 6107 7198 1 chr6B.!!$F1 1091
19 TraesCS2D01G339300 chr6B 480388244 480389062 818 False 644.500000 941 95.013500 8870 9730 2 chr6B.!!$F3 860
20 TraesCS2D01G339300 chr2B 521512031 521512868 837 True 1083.000000 1083 90.338000 6017 6849 1 chr2B.!!$R2 832
21 TraesCS2D01G339300 chr2B 63275620 63276244 624 True 697.000000 697 86.846000 5593 6220 1 chr2B.!!$R1 627
22 TraesCS2D01G339300 chr2B 761997443 761998222 779 True 605.500000 856 95.584000 8879 9730 2 chr2B.!!$R4 851
23 TraesCS2D01G339300 chr2B 310495843 310501522 5679 False 513.000000 917 92.215600 1072 8610 5 chr2B.!!$F2 7538
24 TraesCS2D01G339300 chr7D 7476862 7477682 820 True 572.500000 902 90.059500 8879 9730 2 chr7D.!!$R1 851
25 TraesCS2D01G339300 chr7D 84893455 84894405 950 True 409.000000 780 92.016000 2565 3385 3 chr7D.!!$R2 820
26 TraesCS2D01G339300 chr6A 21403906 21404733 827 True 850.000000 850 85.459000 5400 6224 1 chr6A.!!$R1 824
27 TraesCS2D01G339300 chr6A 182495381 182495964 583 True 802.000000 802 91.638000 6621 7198 1 chr6A.!!$R4 577
28 TraesCS2D01G339300 chr3A 734757865 734758443 578 True 835.000000 835 92.771000 6621 7198 1 chr3A.!!$R2 577
29 TraesCS2D01G339300 chr7B 293124920 293125495 575 True 806.000000 806 91.966000 6621 7198 1 chr7B.!!$R1 577
30 TraesCS2D01G339300 chr3D 556072925 556073710 785 False 800.000000 800 85.316000 5400 6176 1 chr3D.!!$F3 776
31 TraesCS2D01G339300 chr3D 118420578 118421181 603 True 566.000000 566 83.732000 9111 9730 1 chr3D.!!$R1 619
32 TraesCS2D01G339300 chr4B 671787096 671787680 584 True 797.000000 797 91.482000 6621 7198 1 chr4B.!!$R2 577
33 TraesCS2D01G339300 chr1B 661033349 661033975 626 True 693.000000 693 86.688000 5593 6220 1 chr1B.!!$R2 627
34 TraesCS2D01G339300 chr5A 25096914 25098425 1511 False 237.500000 292 89.353500 2565 2962 2 chr5A.!!$F1 397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
375 376 0.249489 CCACGGCTAGGATGTAGTGC 60.249 60.000 0.00 0.00 0.00 4.40 F
684 1237 0.321346 TTGTCCTGATCTTGCGCTCA 59.679 50.000 9.73 2.37 0.00 4.26 F
2270 4228 0.234625 GCAACGCACGTCTTCATCAA 59.765 50.000 0.00 0.00 0.00 2.57 F
3301 6608 0.107945 GATGGGTGCCTGTCTCTGTC 60.108 60.000 0.00 0.00 0.00 3.51 F
4310 7956 0.514255 CACCTCACAGTTCACATGCG 59.486 55.000 0.00 0.00 0.00 4.73 F
5585 10384 1.138859 CCAGTCTATGTTGCCCATCGA 59.861 52.381 0.00 0.00 34.86 3.59 F
6699 11537 0.036952 CGTGCACCATCACTTCCTCT 60.037 55.000 12.15 0.00 34.92 3.69 F
7292 12158 0.041312 GCGCTAATTACACGGCATGG 60.041 55.000 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2251 4209 0.234625 TTGATGAAGACGTGCGTTGC 59.765 50.000 0.00 0.00 0.00 4.17 R
2573 4531 2.546899 TGATACAACACCCTAGCCTGT 58.453 47.619 0.00 0.00 0.00 4.00 R
3590 6897 1.876714 CAGCAGCCGAATTGCATGC 60.877 57.895 11.82 11.82 43.92 4.06 R
4568 8214 0.179111 CATGGCTCGACACCACGTAT 60.179 55.000 4.57 0.00 40.82 3.06 R
5804 10605 7.786046 TCTACACAGGAAGTTGGTAGAATAA 57.214 36.000 0.00 0.00 37.93 1.40 R
7273 12139 0.041312 CCATGCCGTGTAATTAGCGC 60.041 55.000 0.00 0.00 0.00 5.92 R
7870 12751 0.108329 AAGGCATCCGGTGTTAGTCG 60.108 55.000 0.00 0.00 0.00 4.18 R
9161 16366 1.374758 CGCAGGAAGGCTCGAAACT 60.375 57.895 0.00 0.00 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 2.495084 CGATGGATGAGGTCGAGTCTA 58.505 52.381 0.00 0.00 37.55 2.59
106 107 2.639347 TCTTGGTCAGAGAGCCAAATGA 59.361 45.455 0.00 0.00 43.29 2.57
146 147 1.241315 GGTTCCACATGACCAACCGG 61.241 60.000 0.00 0.00 35.95 5.28
147 148 1.602323 TTCCACATGACCAACCGGC 60.602 57.895 0.00 0.00 34.57 6.13
152 153 2.124736 ATGACCAACCGGCCATCG 60.125 61.111 0.00 0.00 34.57 3.84
153 154 2.665089 ATGACCAACCGGCCATCGA 61.665 57.895 0.00 0.00 42.43 3.59
162 163 3.134127 GGCCATCGAAGTGGTGCC 61.134 66.667 6.90 0.00 41.47 5.01
186 187 2.959030 CCACCATCATTCTAGAGGACGA 59.041 50.000 2.14 0.00 0.00 4.20
187 188 3.005261 CCACCATCATTCTAGAGGACGAG 59.995 52.174 2.14 0.00 0.00 4.18
188 189 3.005261 CACCATCATTCTAGAGGACGAGG 59.995 52.174 2.14 6.11 0.00 4.63
189 190 3.117474 ACCATCATTCTAGAGGACGAGGA 60.117 47.826 13.61 0.15 0.00 3.71
190 191 3.505680 CCATCATTCTAGAGGACGAGGAG 59.494 52.174 0.00 0.00 0.00 3.69
231 232 2.751913 CGGTCGAGTCTGAGGACGG 61.752 68.421 0.00 0.00 46.29 4.79
246 247 2.240612 GACGGTGGCAATGTCGAAGC 62.241 60.000 4.82 0.00 0.00 3.86
256 257 3.843868 GCAATGTCGAAGCGATGAAGATG 60.844 47.826 0.00 0.00 38.42 2.90
262 263 1.936547 GAAGCGATGAAGATGGTGGTC 59.063 52.381 0.00 0.00 0.00 4.02
271 272 0.252696 AGATGGTGGTCAGGGTGCTA 60.253 55.000 0.00 0.00 0.00 3.49
279 280 1.079256 TCAGGGTGCTAGAGCCAGT 59.921 57.895 11.39 0.00 45.68 4.00
283 284 0.543749 GGGTGCTAGAGCCAGTCAAT 59.456 55.000 0.00 0.00 42.41 2.57
310 311 1.417890 CTACCCATGGAGGTGGATGAC 59.582 57.143 15.22 0.00 40.71 3.06
318 319 1.134371 GGAGGTGGATGACTACAAGCC 60.134 57.143 0.00 0.00 0.00 4.35
331 332 4.353777 ACTACAAGCCTCAAGGACTATCA 58.646 43.478 0.00 0.00 37.39 2.15
332 333 3.902881 ACAAGCCTCAAGGACTATCAG 57.097 47.619 0.00 0.00 37.39 2.90
341 342 3.582647 TCAAGGACTATCAGTGCTCCAAA 59.417 43.478 0.58 0.00 46.56 3.28
342 343 4.041567 TCAAGGACTATCAGTGCTCCAAAA 59.958 41.667 0.58 0.00 46.56 2.44
343 344 4.213564 AGGACTATCAGTGCTCCAAAAG 57.786 45.455 0.00 0.00 43.78 2.27
348 349 4.762251 ACTATCAGTGCTCCAAAAGTTTCC 59.238 41.667 0.00 0.00 0.00 3.13
351 352 2.951642 CAGTGCTCCAAAAGTTTCCAGA 59.048 45.455 0.00 0.00 0.00 3.86
361 362 2.027625 GTTTCCAGACTCGCCACGG 61.028 63.158 0.00 0.00 0.00 4.94
375 376 0.249489 CCACGGCTAGGATGTAGTGC 60.249 60.000 0.00 0.00 0.00 4.40
377 378 1.367840 CGGCTAGGATGTAGTGCCC 59.632 63.158 0.00 0.00 40.40 5.36
406 407 3.237746 TGGTTTTGAATGGATGGCTCAA 58.762 40.909 0.00 0.00 0.00 3.02
422 423 0.478789 TCAATGTACCCCACCCCCTT 60.479 55.000 0.00 0.00 0.00 3.95
451 452 4.992381 AATTGTACTGTTCGAACTGCTC 57.008 40.909 28.56 22.12 0.00 4.26
480 481 2.860009 AGTCGGATATGCCTAAGTCGA 58.140 47.619 0.00 0.00 0.00 4.20
493 494 5.584649 TGCCTAAGTCGAATACCAAATTGAG 59.415 40.000 0.00 0.00 0.00 3.02
536 537 5.036737 GCCAAGTCCATGATTTGTAAATCG 58.963 41.667 11.48 0.69 46.01 3.34
538 539 6.624861 GCCAAGTCCATGATTTGTAAATCGAA 60.625 38.462 11.48 0.00 46.01 3.71
546 1097 0.375454 TTGTAAATCGAATGCGGGCG 59.625 50.000 0.00 0.00 38.28 6.13
559 1110 0.814010 GCGGGCGTGGTATGAATCTT 60.814 55.000 0.00 0.00 0.00 2.40
621 1172 2.847234 TGAGGTGGTGAAGCCGGT 60.847 61.111 1.90 0.00 41.21 5.28
646 1197 1.978580 GTCTTCCAGTTCTTCCCTCCA 59.021 52.381 0.00 0.00 0.00 3.86
665 1218 3.933048 ATGCTTGCAGCCGCCTCTT 62.933 57.895 0.87 0.00 41.51 2.85
684 1237 0.321346 TTGTCCTGATCTTGCGCTCA 59.679 50.000 9.73 2.37 0.00 4.26
688 1241 0.463295 CCTGATCTTGCGCTCACCAT 60.463 55.000 9.73 0.00 0.00 3.55
720 1273 3.364549 AGAGTGGAGAGATGGAAGAGTG 58.635 50.000 0.00 0.00 0.00 3.51
761 1314 0.876342 GGAGTTATGAGGGCGCTTCG 60.876 60.000 7.64 0.00 0.00 3.79
788 1341 2.792290 CGCGACATCTCAAGCGTGG 61.792 63.158 0.00 0.00 46.48 4.94
794 1347 0.809241 CATCTCAAGCGTGGCTCCTC 60.809 60.000 0.00 0.00 38.25 3.71
821 1374 1.875963 CCTTCAACATCCACGTGCC 59.124 57.895 10.91 0.00 0.00 5.01
834 1387 1.446792 CGTGCCTCGAGTTGCATCT 60.447 57.895 17.57 0.00 42.86 2.90
848 1401 1.834378 CATCTCTCGGGCCTGGCTA 60.834 63.158 19.68 3.70 0.00 3.93
849 1402 1.532794 ATCTCTCGGGCCTGGCTAG 60.533 63.158 19.68 13.48 0.00 3.42
870 1423 2.922779 AAAAACGGCCGATTCGAGT 58.077 47.368 35.90 8.42 0.00 4.18
879 1432 1.134560 GCCGATTCGAGTGTTCCTACT 59.865 52.381 7.83 0.00 0.00 2.57
934 1487 2.224992 TGGCCAAGATTTAGGTGCAAGA 60.225 45.455 0.61 0.00 0.00 3.02
951 1504 0.663153 AGACAAGCAACCAAACGAGC 59.337 50.000 0.00 0.00 0.00 5.03
960 1513 3.368495 CAACCAAACGAGCCAAAACTAC 58.632 45.455 0.00 0.00 0.00 2.73
970 1523 2.756760 AGCCAAAACTACATCATGCAGG 59.243 45.455 0.00 0.00 0.00 4.85
979 1532 1.100510 CATCATGCAGGTCTGGTTGG 58.899 55.000 0.00 0.00 0.00 3.77
1016 1569 1.021968 AAACACGTCACAAGCTTCCC 58.978 50.000 0.00 0.00 0.00 3.97
1017 1570 1.157870 AACACGTCACAAGCTTCCCG 61.158 55.000 0.00 0.00 0.00 5.14
1020 1573 2.946762 GTCACAAGCTTCCCGTGC 59.053 61.111 9.88 3.31 0.00 5.34
1098 1651 5.294060 GTGCTCTGAAAATTTTGCAAAAGGA 59.706 36.000 27.08 11.39 32.10 3.36
1245 1798 1.553651 GGAAGGGAAGTGAGAGAGGGT 60.554 57.143 0.00 0.00 0.00 4.34
1452 2008 4.238761 TCAAGGATGGATCGATAACGTC 57.761 45.455 0.00 5.58 40.69 4.34
1531 2087 3.139077 CCCTCCGTTCACCATTATAAGC 58.861 50.000 0.00 0.00 0.00 3.09
2026 3977 8.970859 CAAATCCTTTGGTATCTCTCTGTAAT 57.029 34.615 0.00 0.00 37.01 1.89
2027 3978 9.050601 CAAATCCTTTGGTATCTCTCTGTAATC 57.949 37.037 0.00 0.00 37.01 1.75
2028 3979 7.921041 ATCCTTTGGTATCTCTCTGTAATCA 57.079 36.000 0.00 0.00 0.00 2.57
2029 3980 7.353414 TCCTTTGGTATCTCTCTGTAATCAG 57.647 40.000 0.00 0.00 42.54 2.90
2030 3981 6.897966 TCCTTTGGTATCTCTCTGTAATCAGT 59.102 38.462 0.00 0.00 41.91 3.41
2036 3987 9.384764 TGGTATCTCTCTGTAATCAGTATATCG 57.615 37.037 0.00 0.00 41.91 2.92
2232 4190 6.751425 CGAGCTGAATTAGAGGCTTATATCAG 59.249 42.308 0.00 11.51 36.89 2.90
2245 4203 9.743057 GAGGCTTATATCAGTATAGTAAGCATG 57.257 37.037 14.87 0.00 45.48 4.06
2246 4204 9.261035 AGGCTTATATCAGTATAGTAAGCATGT 57.739 33.333 14.87 0.10 45.48 3.21
2252 4210 5.516996 TCAGTATAGTAAGCATGTACGTGC 58.483 41.667 28.92 28.92 45.38 5.34
2267 4225 4.041617 TGCAACGCACGTCTTCAT 57.958 50.000 0.00 0.00 31.71 2.57
2268 4226 1.859398 TGCAACGCACGTCTTCATC 59.141 52.632 0.00 0.00 31.71 2.92
2269 4227 0.878086 TGCAACGCACGTCTTCATCA 60.878 50.000 0.00 0.00 31.71 3.07
2270 4228 0.234625 GCAACGCACGTCTTCATCAA 59.765 50.000 0.00 0.00 0.00 2.57
2271 4229 1.135972 GCAACGCACGTCTTCATCAAT 60.136 47.619 0.00 0.00 0.00 2.57
2272 4230 2.093625 GCAACGCACGTCTTCATCAATA 59.906 45.455 0.00 0.00 0.00 1.90
2273 4231 3.659735 CAACGCACGTCTTCATCAATAC 58.340 45.455 0.00 0.00 0.00 1.89
2274 4232 2.954316 ACGCACGTCTTCATCAATACA 58.046 42.857 0.00 0.00 0.00 2.29
2275 4233 2.666508 ACGCACGTCTTCATCAATACAC 59.333 45.455 0.00 0.00 0.00 2.90
2276 4234 2.666022 CGCACGTCTTCATCAATACACA 59.334 45.455 0.00 0.00 0.00 3.72
2277 4235 3.122780 CGCACGTCTTCATCAATACACAA 59.877 43.478 0.00 0.00 0.00 3.33
2278 4236 4.201714 CGCACGTCTTCATCAATACACAAT 60.202 41.667 0.00 0.00 0.00 2.71
2279 4237 5.005299 CGCACGTCTTCATCAATACACAATA 59.995 40.000 0.00 0.00 0.00 1.90
2280 4238 6.185399 GCACGTCTTCATCAATACACAATAC 58.815 40.000 0.00 0.00 0.00 1.89
2281 4239 6.183360 GCACGTCTTCATCAATACACAATACA 60.183 38.462 0.00 0.00 0.00 2.29
2282 4240 7.173419 CACGTCTTCATCAATACACAATACAC 58.827 38.462 0.00 0.00 0.00 2.90
2283 4241 6.871492 ACGTCTTCATCAATACACAATACACA 59.129 34.615 0.00 0.00 0.00 3.72
2284 4242 7.549134 ACGTCTTCATCAATACACAATACACAT 59.451 33.333 0.00 0.00 0.00 3.21
2285 4243 9.030301 CGTCTTCATCAATACACAATACACATA 57.970 33.333 0.00 0.00 0.00 2.29
2374 4332 1.428869 GGAGGAGGGTAGCACATCAT 58.571 55.000 0.00 0.00 0.00 2.45
2375 4333 1.771255 GGAGGAGGGTAGCACATCATT 59.229 52.381 0.00 0.00 0.00 2.57
2385 4343 5.470098 GGGTAGCACATCATTCATCGTATTT 59.530 40.000 0.00 0.00 0.00 1.40
2524 4482 0.680061 GTCTTGGTTGTCGAGAGGGT 59.320 55.000 0.00 0.00 36.61 4.34
2537 4495 2.223923 CGAGAGGGTCACAATCATCTCC 60.224 54.545 0.00 0.00 31.56 3.71
2573 4531 3.519579 CTGCACCATGTGTTTTGTTTGA 58.480 40.909 0.00 0.00 35.75 2.69
2579 4537 3.430651 CCATGTGTTTTGTTTGACAGGCT 60.431 43.478 0.00 0.00 0.00 4.58
3193 6399 3.470888 CCAGGGGTTCGCTCCGAT 61.471 66.667 0.00 0.00 44.46 4.18
3297 6604 2.187946 CCGATGGGTGCCTGTCTC 59.812 66.667 0.00 0.00 0.00 3.36
3298 6605 2.362369 CCGATGGGTGCCTGTCTCT 61.362 63.158 0.00 0.00 0.00 3.10
3299 6606 1.153489 CGATGGGTGCCTGTCTCTG 60.153 63.158 0.00 0.00 0.00 3.35
3300 6607 1.892819 CGATGGGTGCCTGTCTCTGT 61.893 60.000 0.00 0.00 0.00 3.41
3301 6608 0.107945 GATGGGTGCCTGTCTCTGTC 60.108 60.000 0.00 0.00 0.00 3.51
3302 6609 0.546267 ATGGGTGCCTGTCTCTGTCT 60.546 55.000 0.00 0.00 0.00 3.41
3318 6625 8.037166 TGTCTCTGTCTGTACGTATTCTACTTA 58.963 37.037 0.00 0.00 0.00 2.24
3477 6784 2.855887 CTGCAGAAGCTGAGCACAT 58.144 52.632 8.42 0.00 41.71 3.21
3590 6897 2.499289 AGCACAGTACCTCATCAGAAGG 59.501 50.000 0.00 0.00 0.00 3.46
4249 7893 6.865834 AATTCATACCCAAACCTTGCAATA 57.134 33.333 0.00 0.00 0.00 1.90
4310 7956 0.514255 CACCTCACAGTTCACATGCG 59.486 55.000 0.00 0.00 0.00 4.73
4568 8214 1.304962 TGGGCGCTCTCCTGACTTA 60.305 57.895 9.62 0.00 0.00 2.24
5059 9844 5.302568 TCACTGAAGAATTGCAGTTTCCATT 59.697 36.000 0.00 0.00 42.33 3.16
5080 9865 2.108970 TCTCTCTCTCACAGCATGCAT 58.891 47.619 21.98 4.26 42.53 3.96
5585 10384 1.138859 CCAGTCTATGTTGCCCATCGA 59.861 52.381 0.00 0.00 34.86 3.59
5804 10605 0.469070 CCTCTGCTATCAAGGCTGCT 59.531 55.000 0.00 0.00 0.00 4.24
6252 11066 5.230942 GGTGTCCAGAATCAATATAGACGG 58.769 45.833 0.00 0.00 0.00 4.79
6352 11166 2.387952 AGGAACTTGGGAATCCGCT 58.612 52.632 0.00 0.00 38.31 5.52
6447 11267 6.154203 TGCAGGTCTTGATAACTATGAGAG 57.846 41.667 0.00 0.00 0.00 3.20
6609 11447 1.802880 GCACGACAATAGAGCGGATGT 60.803 52.381 0.00 0.00 0.00 3.06
6699 11537 0.036952 CGTGCACCATCACTTCCTCT 60.037 55.000 12.15 0.00 34.92 3.69
6719 11557 7.461749 TCCTCTCTGGACAGAACAAATTAATT 58.538 34.615 3.35 0.00 40.56 1.40
6728 11566 7.115378 GGACAGAACAAATTAATTCAGCAAGTG 59.885 37.037 0.10 0.00 0.00 3.16
7176 12042 2.072487 GCCATCAGGAGTAGGGGCA 61.072 63.158 0.00 0.00 41.02 5.36
7225 12091 2.282462 CGAAGCACAAAGGGGCCT 60.282 61.111 0.84 0.00 0.00 5.19
7226 12092 2.629656 CGAAGCACAAAGGGGCCTG 61.630 63.158 0.84 0.00 0.00 4.85
7227 12093 2.203684 AAGCACAAAGGGGCCTGG 60.204 61.111 0.84 0.00 0.00 4.45
7228 12094 3.833553 AAGCACAAAGGGGCCTGGG 62.834 63.158 0.84 0.00 0.00 4.45
7229 12095 4.621087 GCACAAAGGGGCCTGGGT 62.621 66.667 0.84 0.00 0.00 4.51
7230 12096 2.283173 CACAAAGGGGCCTGGGTC 60.283 66.667 0.84 0.00 0.00 4.46
7231 12097 3.590574 ACAAAGGGGCCTGGGTCC 61.591 66.667 0.84 0.86 39.62 4.46
7260 12126 3.639445 GCCTCTGCCCTCTCATCA 58.361 61.111 0.00 0.00 0.00 3.07
7261 12127 1.145819 GCCTCTGCCCTCTCATCAC 59.854 63.158 0.00 0.00 0.00 3.06
7262 12128 1.620739 GCCTCTGCCCTCTCATCACA 61.621 60.000 0.00 0.00 0.00 3.58
7263 12129 0.177604 CCTCTGCCCTCTCATCACAC 59.822 60.000 0.00 0.00 0.00 3.82
7264 12130 0.179116 CTCTGCCCTCTCATCACACG 60.179 60.000 0.00 0.00 0.00 4.49
7265 12131 1.153489 CTGCCCTCTCATCACACGG 60.153 63.158 0.00 0.00 0.00 4.94
7266 12132 2.187946 GCCCTCTCATCACACGGG 59.812 66.667 0.00 0.00 37.97 5.28
7267 12133 2.359169 GCCCTCTCATCACACGGGA 61.359 63.158 0.00 0.00 37.05 5.14
7268 12134 1.690219 GCCCTCTCATCACACGGGAT 61.690 60.000 0.00 0.00 37.05 3.85
7269 12135 0.105593 CCCTCTCATCACACGGGATG 59.894 60.000 2.71 2.71 44.78 3.51
7270 12136 0.826715 CCTCTCATCACACGGGATGT 59.173 55.000 9.05 0.00 44.00 3.06
7271 12137 1.208052 CCTCTCATCACACGGGATGTT 59.792 52.381 9.05 0.00 44.00 2.71
7272 12138 2.430694 CCTCTCATCACACGGGATGTTA 59.569 50.000 9.05 0.00 44.00 2.41
7273 12139 3.491619 CCTCTCATCACACGGGATGTTAG 60.492 52.174 9.05 7.64 44.00 2.34
7274 12140 2.159099 TCTCATCACACGGGATGTTAGC 60.159 50.000 9.05 0.00 44.00 3.09
7275 12141 0.930310 CATCACACGGGATGTTAGCG 59.070 55.000 0.00 0.00 40.64 4.26
7276 12142 0.810031 ATCACACGGGATGTTAGCGC 60.810 55.000 0.00 0.00 40.64 5.92
7277 12143 1.447838 CACACGGGATGTTAGCGCT 60.448 57.895 17.26 17.26 40.64 5.92
7278 12144 0.179121 CACACGGGATGTTAGCGCTA 60.179 55.000 14.45 14.45 40.64 4.26
7279 12145 0.533491 ACACGGGATGTTAGCGCTAA 59.467 50.000 25.53 25.53 38.98 3.09
7280 12146 1.138266 ACACGGGATGTTAGCGCTAAT 59.862 47.619 30.90 17.59 38.98 1.73
7281 12147 2.210116 CACGGGATGTTAGCGCTAATT 58.790 47.619 30.90 21.56 0.00 1.40
7282 12148 3.181473 ACACGGGATGTTAGCGCTAATTA 60.181 43.478 30.90 22.79 38.98 1.40
7283 12149 3.183775 CACGGGATGTTAGCGCTAATTAC 59.816 47.826 30.90 21.49 0.00 1.89
7284 12150 3.181473 ACGGGATGTTAGCGCTAATTACA 60.181 43.478 30.90 24.89 0.00 2.41
7285 12151 3.183775 CGGGATGTTAGCGCTAATTACAC 59.816 47.826 30.90 22.61 0.00 2.90
7286 12152 3.183775 GGGATGTTAGCGCTAATTACACG 59.816 47.826 30.90 0.00 0.00 4.49
7287 12153 3.183775 GGATGTTAGCGCTAATTACACGG 59.816 47.826 30.90 0.00 0.00 4.94
7288 12154 1.928503 TGTTAGCGCTAATTACACGGC 59.071 47.619 30.90 16.52 0.00 5.68
7289 12155 1.928503 GTTAGCGCTAATTACACGGCA 59.071 47.619 30.90 3.46 0.00 5.69
7290 12156 2.519377 TAGCGCTAATTACACGGCAT 57.481 45.000 16.33 0.00 0.00 4.40
7291 12157 0.937304 AGCGCTAATTACACGGCATG 59.063 50.000 8.99 0.00 0.00 4.06
7292 12158 0.041312 GCGCTAATTACACGGCATGG 60.041 55.000 0.00 0.00 0.00 3.66
7293 12159 1.577468 CGCTAATTACACGGCATGGA 58.423 50.000 0.00 0.00 0.00 3.41
7294 12160 2.143122 CGCTAATTACACGGCATGGAT 58.857 47.619 0.00 0.00 0.00 3.41
7295 12161 2.157668 CGCTAATTACACGGCATGGATC 59.842 50.000 0.00 0.00 0.00 3.36
7296 12162 2.484264 GCTAATTACACGGCATGGATCC 59.516 50.000 4.20 4.20 0.00 3.36
7297 12163 1.981256 AATTACACGGCATGGATCCC 58.019 50.000 9.90 0.00 0.00 3.85
7298 12164 1.140312 ATTACACGGCATGGATCCCT 58.860 50.000 9.90 0.00 0.00 4.20
7299 12165 0.916086 TTACACGGCATGGATCCCTT 59.084 50.000 9.90 0.00 0.00 3.95
7300 12166 0.180171 TACACGGCATGGATCCCTTG 59.820 55.000 9.90 8.37 0.00 3.61
7301 12167 1.077501 CACGGCATGGATCCCTTGT 60.078 57.895 9.90 0.00 32.20 3.16
7302 12168 0.680921 CACGGCATGGATCCCTTGTT 60.681 55.000 9.90 0.00 32.20 2.83
7303 12169 0.680921 ACGGCATGGATCCCTTGTTG 60.681 55.000 9.90 6.58 32.20 3.33
7304 12170 1.818555 GGCATGGATCCCTTGTTGC 59.181 57.895 9.90 10.30 32.20 4.17
7305 12171 0.685458 GGCATGGATCCCTTGTTGCT 60.685 55.000 9.90 0.00 32.20 3.91
7306 12172 1.410083 GGCATGGATCCCTTGTTGCTA 60.410 52.381 9.90 0.00 32.20 3.49
7307 12173 1.678101 GCATGGATCCCTTGTTGCTAC 59.322 52.381 9.90 0.00 32.20 3.58
7308 12174 2.684927 GCATGGATCCCTTGTTGCTACT 60.685 50.000 9.90 0.00 32.20 2.57
7309 12175 3.209410 CATGGATCCCTTGTTGCTACTC 58.791 50.000 9.90 0.00 0.00 2.59
7310 12176 2.551270 TGGATCCCTTGTTGCTACTCT 58.449 47.619 9.90 0.00 0.00 3.24
7311 12177 2.912956 TGGATCCCTTGTTGCTACTCTT 59.087 45.455 9.90 0.00 0.00 2.85
7312 12178 3.274288 GGATCCCTTGTTGCTACTCTTG 58.726 50.000 0.00 0.00 0.00 3.02
7313 12179 2.185004 TCCCTTGTTGCTACTCTTGC 57.815 50.000 0.00 0.00 0.00 4.01
7314 12180 0.798776 CCCTTGTTGCTACTCTTGCG 59.201 55.000 0.00 0.00 0.00 4.85
7315 12181 0.798776 CCTTGTTGCTACTCTTGCGG 59.201 55.000 0.00 0.00 0.00 5.69
7316 12182 1.608025 CCTTGTTGCTACTCTTGCGGA 60.608 52.381 0.00 0.00 0.00 5.54
7317 12183 1.728971 CTTGTTGCTACTCTTGCGGAG 59.271 52.381 0.00 5.17 46.87 4.63
7366 12232 4.176752 GGGGGCGGCGAGAAGAAT 62.177 66.667 12.98 0.00 0.00 2.40
7367 12233 2.897350 GGGGCGGCGAGAAGAATG 60.897 66.667 12.98 0.00 0.00 2.67
7368 12234 2.186903 GGGCGGCGAGAAGAATGA 59.813 61.111 12.98 0.00 0.00 2.57
7369 12235 1.884926 GGGCGGCGAGAAGAATGAG 60.885 63.158 12.98 0.00 0.00 2.90
7370 12236 1.884926 GGCGGCGAGAAGAATGAGG 60.885 63.158 12.98 0.00 0.00 3.86
7371 12237 1.141881 GCGGCGAGAAGAATGAGGA 59.858 57.895 12.98 0.00 0.00 3.71
7372 12238 0.249657 GCGGCGAGAAGAATGAGGAT 60.250 55.000 12.98 0.00 0.00 3.24
7373 12239 1.495878 CGGCGAGAAGAATGAGGATG 58.504 55.000 0.00 0.00 0.00 3.51
7374 12240 1.871408 CGGCGAGAAGAATGAGGATGG 60.871 57.143 0.00 0.00 0.00 3.51
7375 12241 1.224965 GCGAGAAGAATGAGGATGGC 58.775 55.000 0.00 0.00 0.00 4.40
7376 12242 1.473965 GCGAGAAGAATGAGGATGGCA 60.474 52.381 0.00 0.00 0.00 4.92
7377 12243 2.208431 CGAGAAGAATGAGGATGGCAC 58.792 52.381 0.00 0.00 0.00 5.01
7378 12244 2.208431 GAGAAGAATGAGGATGGCACG 58.792 52.381 0.00 0.00 0.00 5.34
7379 12245 1.134280 AGAAGAATGAGGATGGCACGG 60.134 52.381 0.00 0.00 0.00 4.94
7380 12246 0.911769 AAGAATGAGGATGGCACGGA 59.088 50.000 0.00 0.00 0.00 4.69
7381 12247 1.135094 AGAATGAGGATGGCACGGAT 58.865 50.000 0.00 0.00 0.00 4.18
7382 12248 1.492176 AGAATGAGGATGGCACGGATT 59.508 47.619 0.00 0.00 0.00 3.01
7383 12249 1.605710 GAATGAGGATGGCACGGATTG 59.394 52.381 0.00 0.00 0.00 2.67
7384 12250 0.179009 ATGAGGATGGCACGGATTGG 60.179 55.000 0.00 0.00 0.00 3.16
7385 12251 1.271127 TGAGGATGGCACGGATTGGA 61.271 55.000 0.00 0.00 0.00 3.53
7386 12252 0.815615 GAGGATGGCACGGATTGGAC 60.816 60.000 0.00 0.00 0.00 4.02
7387 12253 1.077787 GGATGGCACGGATTGGACA 60.078 57.895 0.00 0.00 0.00 4.02
7388 12254 1.376609 GGATGGCACGGATTGGACAC 61.377 60.000 0.00 0.00 0.00 3.67
7389 12255 1.705337 GATGGCACGGATTGGACACG 61.705 60.000 0.00 0.00 0.00 4.49
7390 12256 3.124921 GGCACGGATTGGACACGG 61.125 66.667 0.00 0.00 0.00 4.94
7391 12257 2.358247 GCACGGATTGGACACGGT 60.358 61.111 0.00 0.00 0.00 4.83
7392 12258 2.677003 GCACGGATTGGACACGGTG 61.677 63.158 6.58 6.58 39.27 4.94
7393 12259 2.032634 CACGGATTGGACACGGTGG 61.033 63.158 13.48 0.00 35.02 4.61
7394 12260 3.124921 CGGATTGGACACGGTGGC 61.125 66.667 13.48 9.68 0.00 5.01
7395 12261 2.033448 GGATTGGACACGGTGGCA 59.967 61.111 17.13 0.00 0.00 4.92
7396 12262 2.040544 GGATTGGACACGGTGGCAG 61.041 63.158 17.13 0.00 0.00 4.85
7397 12263 2.672996 ATTGGACACGGTGGCAGC 60.673 61.111 17.13 6.62 0.00 5.25
7419 12285 1.202114 GCAAATGCGTTTGATGAGGGA 59.798 47.619 30.83 0.00 46.03 4.20
7444 12310 2.294170 TAGTACAGGAGGGGGAGCCG 62.294 65.000 0.00 0.00 0.00 5.52
7462 12328 1.485397 CGATCTCAGTCTTGGCATCG 58.515 55.000 0.00 0.00 33.22 3.84
7573 12448 2.266372 CGCGTGGGGGTCATGTAA 59.734 61.111 0.00 0.00 34.91 2.41
7610 12485 3.399181 CCTTGAGCGGTAGGGCCA 61.399 66.667 6.18 0.00 36.97 5.36
7612 12487 2.606519 TTGAGCGGTAGGGCCACT 60.607 61.111 6.18 1.30 36.97 4.00
7870 12751 0.398318 GGGGACTCTATGATGGTGCC 59.602 60.000 0.00 0.00 40.07 5.01
8200 15389 6.479972 TTATGGTGGTCATACTTCCTACAG 57.520 41.667 0.00 0.00 38.01 2.74
8546 15736 4.322953 CCCAAAAGATTCATGAAACTGGGG 60.323 45.833 23.49 23.65 0.00 4.96
8700 15890 1.526887 AGATGTTTGTGAGTTGCGACG 59.473 47.619 0.00 0.00 0.00 5.12
8714 15904 5.224888 AGTTGCGACGAAGAGTAATAAACA 58.775 37.500 0.00 0.00 0.00 2.83
8725 15915 5.243207 AGAGTAATAAACAGGTTTCACCCG 58.757 41.667 0.00 0.00 39.75 5.28
8726 15916 4.976864 AGTAATAAACAGGTTTCACCCGT 58.023 39.130 0.00 0.00 39.75 5.28
8727 15917 4.999311 AGTAATAAACAGGTTTCACCCGTC 59.001 41.667 0.00 0.00 39.75 4.79
8728 15918 3.782656 ATAAACAGGTTTCACCCGTCT 57.217 42.857 0.00 0.00 39.75 4.18
8729 15919 2.430248 AAACAGGTTTCACCCGTCTT 57.570 45.000 0.00 0.00 39.75 3.01
8760 15950 2.161855 TGATTGCTGACGCCATTTCTT 58.838 42.857 0.00 0.00 34.43 2.52
8785 15978 7.189079 ACATCATCATCATCTCTATCATGCT 57.811 36.000 0.00 0.00 0.00 3.79
8834 16028 5.241403 TCCAATTTGACCTGTGTACTGAT 57.759 39.130 0.00 0.00 0.00 2.90
8835 16029 5.003160 TCCAATTTGACCTGTGTACTGATG 58.997 41.667 0.00 0.00 0.00 3.07
8836 16030 5.003160 CCAATTTGACCTGTGTACTGATGA 58.997 41.667 0.00 0.00 0.00 2.92
8837 16031 5.473162 CCAATTTGACCTGTGTACTGATGAA 59.527 40.000 0.00 0.00 0.00 2.57
8838 16032 6.373779 CAATTTGACCTGTGTACTGATGAAC 58.626 40.000 0.00 0.00 0.00 3.18
8860 16054 7.225734 TGAACAGTACGATTGAAACTCAAATGA 59.774 33.333 0.00 0.00 40.12 2.57
8872 16066 6.097554 TGAAACTCAAATGAAAGTAGGCCAAA 59.902 34.615 5.01 0.00 0.00 3.28
8900 16094 3.335579 AGGCGAAGTATCCAGTGAAAAC 58.664 45.455 0.00 0.00 0.00 2.43
9061 16266 0.615544 CATGTGGGGGATTGCCTTGT 60.616 55.000 0.00 0.00 0.00 3.16
9089 16294 2.422093 CCAATCTAACTCTTCCCCAGCC 60.422 54.545 0.00 0.00 0.00 4.85
9090 16295 1.123928 ATCTAACTCTTCCCCAGCCG 58.876 55.000 0.00 0.00 0.00 5.52
9091 16296 0.252103 TCTAACTCTTCCCCAGCCGT 60.252 55.000 0.00 0.00 0.00 5.68
9092 16297 0.613777 CTAACTCTTCCCCAGCCGTT 59.386 55.000 0.00 0.00 0.00 4.44
9093 16298 1.003233 CTAACTCTTCCCCAGCCGTTT 59.997 52.381 0.00 0.00 0.00 3.60
9094 16299 0.250770 AACTCTTCCCCAGCCGTTTC 60.251 55.000 0.00 0.00 0.00 2.78
9095 16300 1.377333 CTCTTCCCCAGCCGTTTCC 60.377 63.158 0.00 0.00 0.00 3.13
9096 16301 1.842381 CTCTTCCCCAGCCGTTTCCT 61.842 60.000 0.00 0.00 0.00 3.36
9097 16302 1.377333 CTTCCCCAGCCGTTTCCTC 60.377 63.158 0.00 0.00 0.00 3.71
9098 16303 2.124507 CTTCCCCAGCCGTTTCCTCA 62.125 60.000 0.00 0.00 0.00 3.86
9099 16304 1.710996 TTCCCCAGCCGTTTCCTCAA 61.711 55.000 0.00 0.00 0.00 3.02
9100 16305 1.228429 CCCCAGCCGTTTCCTCAAA 60.228 57.895 0.00 0.00 0.00 2.69
9101 16306 0.825840 CCCCAGCCGTTTCCTCAAAA 60.826 55.000 0.00 0.00 0.00 2.44
9102 16307 1.036707 CCCAGCCGTTTCCTCAAAAA 58.963 50.000 0.00 0.00 0.00 1.94
9272 16483 3.661648 GGCAGGGCTCCCAAGGAA 61.662 66.667 7.82 0.00 38.92 3.36
9279 16490 1.492993 GGCTCCCAAGGAACTGAGGT 61.493 60.000 0.00 0.00 40.86 3.85
9319 16531 1.069090 GGCAAGGATATCCGCGACA 59.931 57.895 16.21 0.00 42.08 4.35
9455 16667 0.390492 CCAGTGCATCCGAGATGCTA 59.610 55.000 27.67 17.22 44.79 3.49
9516 16728 1.511305 CCGCGTCCATCACACTAGT 59.489 57.895 4.92 0.00 0.00 2.57
9574 16786 4.489771 GGCTGCCCCATGCTACGT 62.490 66.667 7.66 0.00 42.00 3.57
9599 16811 7.027778 ACGCTTTTCTCTGAAAAATTGTAGT 57.972 32.000 6.87 0.41 0.00 2.73
9642 16854 2.023414 AACGTCCGCACAACCTCTGA 62.023 55.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.205893 GGCTCTCTGACCAAGATCGTT 59.794 52.381 0.00 0.00 33.29 3.85
87 88 2.373169 ACTCATTTGGCTCTCTGACCAA 59.627 45.455 0.00 0.00 44.11 3.67
106 107 5.997843 ACCTTGACAAACCTGTACTTAACT 58.002 37.500 0.00 0.00 35.30 2.24
146 147 3.499737 CGGCACCACTTCGATGGC 61.500 66.667 4.93 2.24 44.33 4.40
147 148 2.100631 GTCGGCACCACTTCGATGG 61.101 63.158 3.43 3.43 46.10 3.51
162 163 2.959030 TCCTCTAGAATGATGGTGGTCG 59.041 50.000 0.00 0.00 0.00 4.79
167 168 3.117474 TCCTCGTCCTCTAGAATGATGGT 60.117 47.826 9.95 0.00 0.00 3.55
186 187 0.264359 CACCATCTCCTCCTCCTCCT 59.736 60.000 0.00 0.00 0.00 3.69
187 188 0.762461 CCACCATCTCCTCCTCCTCC 60.762 65.000 0.00 0.00 0.00 4.30
188 189 0.263172 TCCACCATCTCCTCCTCCTC 59.737 60.000 0.00 0.00 0.00 3.71
189 190 0.948050 ATCCACCATCTCCTCCTCCT 59.052 55.000 0.00 0.00 0.00 3.69
190 191 1.055040 CATCCACCATCTCCTCCTCC 58.945 60.000 0.00 0.00 0.00 4.30
231 232 0.247814 CATCGCTTCGACATTGCCAC 60.248 55.000 0.00 0.00 39.18 5.01
246 247 1.473965 CCCTGACCACCATCTTCATCG 60.474 57.143 0.00 0.00 0.00 3.84
256 257 1.901085 CTCTAGCACCCTGACCACC 59.099 63.158 0.00 0.00 0.00 4.61
262 263 1.260538 TGACTGGCTCTAGCACCCTG 61.261 60.000 4.07 0.00 44.36 4.45
271 272 2.171840 AGTGTACGATTGACTGGCTCT 58.828 47.619 0.00 0.00 0.00 4.09
279 280 3.367321 TCCATGGGTAGTGTACGATTGA 58.633 45.455 13.02 0.00 0.00 2.57
283 284 1.006281 ACCTCCATGGGTAGTGTACGA 59.994 52.381 13.02 0.00 41.11 3.43
310 311 4.404073 ACTGATAGTCCTTGAGGCTTGTAG 59.596 45.833 0.00 0.00 34.44 2.74
318 319 2.762887 TGGAGCACTGATAGTCCTTGAG 59.237 50.000 0.00 0.00 0.00 3.02
331 332 2.952310 GTCTGGAAACTTTTGGAGCACT 59.048 45.455 0.00 0.00 0.00 4.40
332 333 2.952310 AGTCTGGAAACTTTTGGAGCAC 59.048 45.455 0.00 0.00 0.00 4.40
341 342 0.600255 CGTGGCGAGTCTGGAAACTT 60.600 55.000 0.00 0.00 0.00 2.66
342 343 1.006102 CGTGGCGAGTCTGGAAACT 60.006 57.895 0.00 0.00 0.00 2.66
343 344 2.027625 CCGTGGCGAGTCTGGAAAC 61.028 63.158 0.00 0.00 0.00 2.78
361 362 0.464452 AACGGGCACTACATCCTAGC 59.536 55.000 0.00 0.00 0.00 3.42
375 376 1.333177 TTCAAAACCATCCCAACGGG 58.667 50.000 0.00 0.00 46.11 5.28
377 378 2.560542 TCCATTCAAAACCATCCCAACG 59.439 45.455 0.00 0.00 0.00 4.10
406 407 1.203648 ACTAAAGGGGGTGGGGTACAT 60.204 52.381 0.00 0.00 0.00 2.29
422 423 8.332464 CAGTTCGAACAGTACAATTTTCACTAA 58.668 33.333 28.78 0.00 0.00 2.24
451 452 5.398603 AGGCATATCCGACTAGAGATTTG 57.601 43.478 0.00 2.95 40.77 2.32
480 481 4.141251 ACCTATCGGGCTCAATTTGGTATT 60.141 41.667 0.00 0.00 39.10 1.89
493 494 2.678190 GCATCCAATCTACCTATCGGGC 60.678 54.545 0.00 0.00 39.10 6.13
536 537 1.092921 TTCATACCACGCCCGCATTC 61.093 55.000 0.00 0.00 0.00 2.67
538 539 0.884704 GATTCATACCACGCCCGCAT 60.885 55.000 0.00 0.00 0.00 4.73
559 1110 4.141574 CGGTAAACCCTTTATCCCTGATGA 60.142 45.833 0.00 0.00 0.00 2.92
621 1172 1.000955 GGAAGAACTGGAAGACGAGCA 59.999 52.381 0.00 0.00 37.43 4.26
684 1237 0.894184 ACTCTCACACCGACGATGGT 60.894 55.000 0.00 0.00 45.21 3.55
688 1241 1.228033 TCCACTCTCACACCGACGA 60.228 57.895 0.00 0.00 0.00 4.20
720 1273 2.099405 CTCACCCTTCTCTCACCTCTC 58.901 57.143 0.00 0.00 0.00 3.20
761 1314 1.696832 GAGATGTCGCGTTGCTTCCC 61.697 60.000 5.77 0.00 0.00 3.97
794 1347 2.839324 GATGTTGAAGGCTGCACGCG 62.839 60.000 3.53 3.53 40.44 6.01
802 1355 1.210155 GCACGTGGATGTTGAAGGC 59.790 57.895 18.88 0.00 0.00 4.35
808 1361 1.079819 CTCGAGGCACGTGGATGTT 60.080 57.895 18.88 0.00 43.13 2.71
834 1387 2.815684 TTTCCTAGCCAGGCCCGAGA 62.816 60.000 8.22 0.00 42.30 4.04
859 1412 1.134560 AGTAGGAACACTCGAATCGGC 59.865 52.381 1.76 0.00 0.00 5.54
870 1423 1.267121 GGTCTGGCTGAGTAGGAACA 58.733 55.000 0.00 0.00 0.00 3.18
879 1432 4.316823 ACCTCCGGGTCTGGCTGA 62.317 66.667 0.00 0.00 43.38 4.26
934 1487 1.034838 TGGCTCGTTTGGTTGCTTGT 61.035 50.000 0.00 0.00 0.00 3.16
951 1504 4.012374 AGACCTGCATGATGTAGTTTTGG 58.988 43.478 9.63 0.00 0.00 3.28
960 1513 1.100510 CCAACCAGACCTGCATGATG 58.899 55.000 0.00 0.00 0.00 3.07
970 1523 2.359900 CTGCATTAGGTCCAACCAGAC 58.640 52.381 0.00 0.00 41.95 3.51
1016 1569 2.048222 ACCTCACATGACCGCACG 60.048 61.111 0.00 0.00 0.00 5.34
1017 1570 2.680913 GCACCTCACATGACCGCAC 61.681 63.158 0.00 0.00 0.00 5.34
1020 1573 0.738762 CAGAGCACCTCACATGACCG 60.739 60.000 0.00 0.00 32.06 4.79
1330 1883 1.375098 CGACGAGGTAGGTGAGGGTC 61.375 65.000 0.00 0.00 0.00 4.46
1547 2103 4.827692 ACACACTAAATTGCCGTATCAGA 58.172 39.130 0.00 0.00 0.00 3.27
1659 2222 8.458052 CCACACTACAAGCAATAATATGACAAA 58.542 33.333 0.00 0.00 0.00 2.83
1699 2262 5.110598 GCCTACTTTGTCCTAAACTCTAGC 58.889 45.833 0.00 0.00 0.00 3.42
2025 3976 6.653740 TCCTTGTATCACGACGATATACTGAT 59.346 38.462 18.29 11.58 38.85 2.90
2026 3977 5.993441 TCCTTGTATCACGACGATATACTGA 59.007 40.000 18.29 6.12 38.85 3.41
2027 3978 6.237313 TCCTTGTATCACGACGATATACTG 57.763 41.667 18.29 13.26 38.85 2.74
2028 3979 6.872628 TTCCTTGTATCACGACGATATACT 57.127 37.500 18.29 0.00 38.85 2.12
2029 3980 6.033619 GCATTCCTTGTATCACGACGATATAC 59.966 42.308 0.00 9.35 38.85 1.47
2030 3981 6.090783 GCATTCCTTGTATCACGACGATATA 58.909 40.000 0.00 0.00 38.85 0.86
2036 3987 2.609459 CCTGCATTCCTTGTATCACGAC 59.391 50.000 0.00 0.00 0.00 4.34
2232 4190 5.331309 CGTTGCACGTACATGCTTACTATAC 60.331 44.000 15.74 1.71 46.28 1.47
2250 4208 0.878086 TGATGAAGACGTGCGTTGCA 60.878 50.000 0.00 0.00 35.60 4.08
2251 4209 0.234625 TTGATGAAGACGTGCGTTGC 59.765 50.000 0.00 0.00 0.00 4.17
2252 4210 2.880822 ATTGATGAAGACGTGCGTTG 57.119 45.000 0.00 0.00 0.00 4.10
2253 4211 3.122948 GTGTATTGATGAAGACGTGCGTT 59.877 43.478 0.00 0.00 0.00 4.84
2254 4212 2.666508 GTGTATTGATGAAGACGTGCGT 59.333 45.455 0.00 0.00 0.00 5.24
2255 4213 2.666022 TGTGTATTGATGAAGACGTGCG 59.334 45.455 0.00 0.00 0.00 5.34
2256 4214 4.661993 TTGTGTATTGATGAAGACGTGC 57.338 40.909 0.00 0.00 0.00 5.34
2257 4215 7.148656 TGTGTATTGTGTATTGATGAAGACGTG 60.149 37.037 0.00 0.00 0.00 4.49
2258 4216 6.871492 TGTGTATTGTGTATTGATGAAGACGT 59.129 34.615 0.00 0.00 0.00 4.34
2259 4217 7.289587 TGTGTATTGTGTATTGATGAAGACG 57.710 36.000 0.00 0.00 0.00 4.18
2270 4228 9.853555 CACACCAATTTTATGTGTATTGTGTAT 57.146 29.630 0.00 0.00 41.04 2.29
2271 4229 9.067986 TCACACCAATTTTATGTGTATTGTGTA 57.932 29.630 11.37 0.00 43.42 2.90
2272 4230 7.946207 TCACACCAATTTTATGTGTATTGTGT 58.054 30.769 11.37 0.00 43.42 3.72
2273 4231 8.081633 ACTCACACCAATTTTATGTGTATTGTG 58.918 33.333 11.37 0.00 43.42 3.33
2274 4232 8.177119 ACTCACACCAATTTTATGTGTATTGT 57.823 30.769 11.37 6.15 43.42 2.71
2285 4243 9.874205 CATTCCATTTATACTCACACCAATTTT 57.126 29.630 0.00 0.00 0.00 1.82
2286 4244 7.981225 GCATTCCATTTATACTCACACCAATTT 59.019 33.333 0.00 0.00 0.00 1.82
2287 4245 7.123997 TGCATTCCATTTATACTCACACCAATT 59.876 33.333 0.00 0.00 0.00 2.32
2288 4246 6.606796 TGCATTCCATTTATACTCACACCAAT 59.393 34.615 0.00 0.00 0.00 3.16
2289 4247 5.948758 TGCATTCCATTTATACTCACACCAA 59.051 36.000 0.00 0.00 0.00 3.67
2290 4248 5.504853 TGCATTCCATTTATACTCACACCA 58.495 37.500 0.00 0.00 0.00 4.17
2291 4249 6.449635 TTGCATTCCATTTATACTCACACC 57.550 37.500 0.00 0.00 0.00 4.16
2292 4250 8.190122 TCATTTGCATTCCATTTATACTCACAC 58.810 33.333 0.00 0.00 0.00 3.82
2293 4251 8.291191 TCATTTGCATTCCATTTATACTCACA 57.709 30.769 0.00 0.00 0.00 3.58
2461 4419 3.869065 CCAAGAACAGGCGGATAAAGTA 58.131 45.455 0.00 0.00 0.00 2.24
2524 4482 5.529581 TGCTAATACGGAGATGATTGTGA 57.470 39.130 0.00 0.00 0.00 3.58
2573 4531 2.546899 TGATACAACACCCTAGCCTGT 58.453 47.619 0.00 0.00 0.00 4.00
2579 4537 5.708736 ATGTCCATTGATACAACACCCTA 57.291 39.130 0.00 0.00 0.00 3.53
3193 6399 4.165950 ACATATGACAAACTGATGGGCCTA 59.834 41.667 10.38 0.00 0.00 3.93
3318 6625 3.463048 AAGAAGGCTTCATGTCCCAAT 57.537 42.857 27.70 2.01 0.00 3.16
3477 6784 8.246430 TCTCTGTCTTTCTGAACCTTTTACTA 57.754 34.615 0.00 0.00 0.00 1.82
3590 6897 1.876714 CAGCAGCCGAATTGCATGC 60.877 57.895 11.82 11.82 43.92 4.06
4018 7661 9.801873 TTTAAGCCTTACTTGATTTTGATATGC 57.198 29.630 0.00 0.00 39.58 3.14
4217 7861 6.214412 AGGTTTGGGTATGAATTAAATTGGCA 59.786 34.615 0.00 0.00 0.00 4.92
4249 7893 3.515901 GAGGTTCTGATGGTCTGTACCTT 59.484 47.826 13.48 0.00 42.82 3.50
4310 7956 1.889545 AAACTGGCTTCAGCTCTGAC 58.110 50.000 0.00 0.00 42.06 3.51
4568 8214 0.179111 CATGGCTCGACACCACGTAT 60.179 55.000 4.57 0.00 40.82 3.06
4989 9768 9.834628 TTATATTTTGAAAATCACTGTTCCGAC 57.165 29.630 6.40 0.00 0.00 4.79
5035 9814 4.206375 TGGAAACTGCAATTCTTCAGTGA 58.794 39.130 10.68 0.00 42.19 3.41
5059 9844 1.897802 TGCATGCTGTGAGAGAGAGAA 59.102 47.619 20.33 0.00 0.00 2.87
5080 9865 2.756207 CCCATGTCATGCTGAATGAACA 59.244 45.455 7.35 2.00 46.90 3.18
5804 10605 7.786046 TCTACACAGGAAGTTGGTAGAATAA 57.214 36.000 0.00 0.00 37.93 1.40
6352 11166 2.496070 CTCATCCTACCTGTTCGGACAA 59.504 50.000 0.00 0.00 34.85 3.18
6447 11267 8.663911 CAAAATTCAGACAAGAATCCTAGACTC 58.336 37.037 0.00 0.00 37.24 3.36
6609 11447 5.115480 GCAAAGTTGAGGTTTGGATTTTGA 58.885 37.500 0.00 0.00 35.75 2.69
6699 11537 6.489700 TGCTGAATTAATTTGTTCTGTCCAGA 59.510 34.615 1.43 0.00 35.27 3.86
6719 11557 4.890158 TTTAGGATCACTCACTTGCTGA 57.110 40.909 0.00 0.00 0.00 4.26
6728 11566 7.606456 TGTGGTGTTAATCTTTTAGGATCACTC 59.394 37.037 0.00 0.00 0.00 3.51
6789 11629 4.662961 CGCGCACACCACTCTCCA 62.663 66.667 8.75 0.00 0.00 3.86
6995 11844 2.847234 ACCTCCAACAGCCGTCCA 60.847 61.111 0.00 0.00 0.00 4.02
7033 11882 1.462627 AAGGGTCCCCGAAGAACCA 60.463 57.895 3.51 0.00 46.96 3.67
7034 11883 1.298993 GAAGGGTCCCCGAAGAACC 59.701 63.158 3.51 0.73 44.68 3.62
7203 12069 4.741781 CCTTTGTGCTTCGCGGCG 62.742 66.667 17.70 17.70 34.52 6.46
7204 12070 4.404654 CCCTTTGTGCTTCGCGGC 62.405 66.667 6.13 2.62 0.00 6.53
7205 12071 3.737172 CCCCTTTGTGCTTCGCGG 61.737 66.667 6.13 0.00 0.00 6.46
7206 12072 4.404654 GCCCCTTTGTGCTTCGCG 62.405 66.667 0.00 0.00 0.00 5.87
7207 12073 4.056125 GGCCCCTTTGTGCTTCGC 62.056 66.667 0.00 0.00 0.00 4.70
7208 12074 2.282462 AGGCCCCTTTGTGCTTCG 60.282 61.111 0.00 0.00 0.00 3.79
7209 12075 2.278330 CCAGGCCCCTTTGTGCTTC 61.278 63.158 0.00 0.00 0.00 3.86
7210 12076 2.203684 CCAGGCCCCTTTGTGCTT 60.204 61.111 0.00 0.00 0.00 3.91
7211 12077 4.305956 CCCAGGCCCCTTTGTGCT 62.306 66.667 0.00 0.00 0.00 4.40
7212 12078 4.621087 ACCCAGGCCCCTTTGTGC 62.621 66.667 0.00 0.00 0.00 4.57
7213 12079 2.283173 GACCCAGGCCCCTTTGTG 60.283 66.667 0.00 0.00 0.00 3.33
7214 12080 3.590574 GGACCCAGGCCCCTTTGT 61.591 66.667 0.00 0.00 0.00 2.83
7215 12081 4.382541 GGGACCCAGGCCCCTTTG 62.383 72.222 5.33 0.00 39.81 2.77
7243 12109 1.145819 GTGATGAGAGGGCAGAGGC 59.854 63.158 0.00 0.00 40.13 4.70
7244 12110 0.177604 GTGTGATGAGAGGGCAGAGG 59.822 60.000 0.00 0.00 0.00 3.69
7245 12111 0.179116 CGTGTGATGAGAGGGCAGAG 60.179 60.000 0.00 0.00 0.00 3.35
7246 12112 1.607801 CCGTGTGATGAGAGGGCAGA 61.608 60.000 0.00 0.00 0.00 4.26
7247 12113 1.153489 CCGTGTGATGAGAGGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
7248 12114 2.659063 CCCGTGTGATGAGAGGGCA 61.659 63.158 0.00 0.00 35.09 5.36
7249 12115 1.690219 ATCCCGTGTGATGAGAGGGC 61.690 60.000 0.00 0.00 41.76 5.19
7250 12116 0.105593 CATCCCGTGTGATGAGAGGG 59.894 60.000 0.00 0.00 43.94 4.30
7251 12117 0.826715 ACATCCCGTGTGATGAGAGG 59.173 55.000 12.17 0.00 43.94 3.69
7252 12118 2.680312 AACATCCCGTGTGATGAGAG 57.320 50.000 12.17 0.00 43.94 3.20
7253 12119 2.159099 GCTAACATCCCGTGTGATGAGA 60.159 50.000 12.17 1.57 43.94 3.27
7254 12120 2.205074 GCTAACATCCCGTGTGATGAG 58.795 52.381 12.17 3.61 43.94 2.90
7255 12121 1.470805 CGCTAACATCCCGTGTGATGA 60.471 52.381 12.17 0.00 43.94 2.92
7256 12122 0.930310 CGCTAACATCCCGTGTGATG 59.070 55.000 5.56 5.56 46.10 3.07
7257 12123 0.810031 GCGCTAACATCCCGTGTGAT 60.810 55.000 0.00 0.00 41.14 3.06
7258 12124 1.447140 GCGCTAACATCCCGTGTGA 60.447 57.895 0.00 0.00 41.14 3.58
7259 12125 0.179121 TAGCGCTAACATCCCGTGTG 60.179 55.000 16.33 0.00 41.14 3.82
7260 12126 0.533491 TTAGCGCTAACATCCCGTGT 59.467 50.000 25.53 0.00 44.84 4.49
7261 12127 1.865865 ATTAGCGCTAACATCCCGTG 58.134 50.000 30.92 0.00 0.00 4.94
7262 12128 2.614829 AATTAGCGCTAACATCCCGT 57.385 45.000 30.92 11.57 0.00 5.28
7263 12129 3.183775 GTGTAATTAGCGCTAACATCCCG 59.816 47.826 30.92 0.00 0.00 5.14
7264 12130 3.183775 CGTGTAATTAGCGCTAACATCCC 59.816 47.826 30.92 17.49 0.00 3.85
7265 12131 3.183775 CCGTGTAATTAGCGCTAACATCC 59.816 47.826 30.92 18.67 0.00 3.51
7266 12132 3.362693 GCCGTGTAATTAGCGCTAACATC 60.363 47.826 30.92 21.84 0.00 3.06
7267 12133 2.542595 GCCGTGTAATTAGCGCTAACAT 59.457 45.455 30.92 23.64 0.00 2.71
7268 12134 1.928503 GCCGTGTAATTAGCGCTAACA 59.071 47.619 30.92 22.36 0.00 2.41
7269 12135 1.928503 TGCCGTGTAATTAGCGCTAAC 59.071 47.619 30.92 20.01 0.00 2.34
7270 12136 2.296831 TGCCGTGTAATTAGCGCTAA 57.703 45.000 30.48 30.48 0.00 3.09
7271 12137 2.131972 CATGCCGTGTAATTAGCGCTA 58.868 47.619 14.45 14.45 0.00 4.26
7272 12138 0.937304 CATGCCGTGTAATTAGCGCT 59.063 50.000 17.26 17.26 0.00 5.92
7273 12139 0.041312 CCATGCCGTGTAATTAGCGC 60.041 55.000 0.00 0.00 0.00 5.92
7274 12140 1.577468 TCCATGCCGTGTAATTAGCG 58.423 50.000 3.22 3.22 0.00 4.26
7275 12141 2.484264 GGATCCATGCCGTGTAATTAGC 59.516 50.000 6.95 0.00 0.00 3.09
7276 12142 3.074412 GGGATCCATGCCGTGTAATTAG 58.926 50.000 15.23 0.00 0.00 1.73
7277 12143 2.708861 AGGGATCCATGCCGTGTAATTA 59.291 45.455 15.23 0.00 43.87 1.40
7278 12144 1.494721 AGGGATCCATGCCGTGTAATT 59.505 47.619 15.23 0.00 43.87 1.40
7279 12145 1.140312 AGGGATCCATGCCGTGTAAT 58.860 50.000 15.23 0.00 43.87 1.89
7280 12146 0.916086 AAGGGATCCATGCCGTGTAA 59.084 50.000 15.23 0.00 43.87 2.41
7281 12147 0.180171 CAAGGGATCCATGCCGTGTA 59.820 55.000 15.23 0.00 43.87 2.90
7282 12148 1.077501 CAAGGGATCCATGCCGTGT 60.078 57.895 15.23 0.00 43.87 4.49
7283 12149 3.831883 CAAGGGATCCATGCCGTG 58.168 61.111 15.23 0.00 43.87 4.94
7284 12150 0.680921 CAACAAGGGATCCATGCCGT 60.681 55.000 15.23 2.10 43.87 5.68
7285 12151 2.008268 GCAACAAGGGATCCATGCCG 62.008 60.000 15.23 7.72 43.87 5.69
7286 12152 0.685458 AGCAACAAGGGATCCATGCC 60.685 55.000 15.23 4.63 38.77 4.40
7287 12153 1.678101 GTAGCAACAAGGGATCCATGC 59.322 52.381 15.23 14.63 0.00 4.06
7288 12154 3.118112 AGAGTAGCAACAAGGGATCCATG 60.118 47.826 15.23 14.30 0.00 3.66
7289 12155 3.118531 AGAGTAGCAACAAGGGATCCAT 58.881 45.455 15.23 2.55 0.00 3.41
7290 12156 2.551270 AGAGTAGCAACAAGGGATCCA 58.449 47.619 15.23 0.00 0.00 3.41
7291 12157 3.274288 CAAGAGTAGCAACAAGGGATCC 58.726 50.000 1.92 1.92 0.00 3.36
7292 12158 2.680339 GCAAGAGTAGCAACAAGGGATC 59.320 50.000 0.00 0.00 0.00 3.36
7293 12159 2.716217 GCAAGAGTAGCAACAAGGGAT 58.284 47.619 0.00 0.00 0.00 3.85
7294 12160 1.608025 CGCAAGAGTAGCAACAAGGGA 60.608 52.381 0.00 0.00 43.02 4.20
7295 12161 0.798776 CGCAAGAGTAGCAACAAGGG 59.201 55.000 0.00 0.00 43.02 3.95
7296 12162 0.798776 CCGCAAGAGTAGCAACAAGG 59.201 55.000 0.00 0.00 43.02 3.61
7297 12163 1.728971 CTCCGCAAGAGTAGCAACAAG 59.271 52.381 0.00 0.00 37.87 3.16
7298 12164 1.795768 CTCCGCAAGAGTAGCAACAA 58.204 50.000 0.00 0.00 37.87 2.83
7299 12165 0.670546 GCTCCGCAAGAGTAGCAACA 60.671 55.000 2.95 0.00 45.21 3.33
7300 12166 1.687494 CGCTCCGCAAGAGTAGCAAC 61.687 60.000 2.95 0.00 45.21 4.17
7301 12167 1.446099 CGCTCCGCAAGAGTAGCAA 60.446 57.895 2.95 0.00 45.21 3.91
7302 12168 2.181777 CGCTCCGCAAGAGTAGCA 59.818 61.111 2.95 0.00 45.21 3.49
7303 12169 2.161486 CACGCTCCGCAAGAGTAGC 61.161 63.158 2.95 0.00 45.21 3.58
7304 12170 1.517257 CCACGCTCCGCAAGAGTAG 60.517 63.158 2.95 1.03 45.21 2.57
7305 12171 2.571757 CCACGCTCCGCAAGAGTA 59.428 61.111 2.95 0.00 45.21 2.59
7306 12172 4.379243 CCCACGCTCCGCAAGAGT 62.379 66.667 2.95 0.00 45.21 3.24
7307 12173 3.997064 CTCCCACGCTCCGCAAGAG 62.997 68.421 0.00 0.00 46.29 2.85
7308 12174 4.069232 CTCCCACGCTCCGCAAGA 62.069 66.667 0.00 0.00 43.02 3.02
7309 12175 4.379243 ACTCCCACGCTCCGCAAG 62.379 66.667 0.00 0.00 0.00 4.01
7310 12176 4.680237 CACTCCCACGCTCCGCAA 62.680 66.667 0.00 0.00 0.00 4.85
7349 12215 4.176752 ATTCTTCTCGCCGCCCCC 62.177 66.667 0.00 0.00 0.00 5.40
7350 12216 2.897350 CATTCTTCTCGCCGCCCC 60.897 66.667 0.00 0.00 0.00 5.80
7351 12217 1.884926 CTCATTCTTCTCGCCGCCC 60.885 63.158 0.00 0.00 0.00 6.13
7352 12218 1.884926 CCTCATTCTTCTCGCCGCC 60.885 63.158 0.00 0.00 0.00 6.13
7353 12219 0.249657 ATCCTCATTCTTCTCGCCGC 60.250 55.000 0.00 0.00 0.00 6.53
7354 12220 1.495878 CATCCTCATTCTTCTCGCCG 58.504 55.000 0.00 0.00 0.00 6.46
7355 12221 1.876322 CCATCCTCATTCTTCTCGCC 58.124 55.000 0.00 0.00 0.00 5.54
7356 12222 1.224965 GCCATCCTCATTCTTCTCGC 58.775 55.000 0.00 0.00 0.00 5.03
7357 12223 2.208431 GTGCCATCCTCATTCTTCTCG 58.792 52.381 0.00 0.00 0.00 4.04
7358 12224 2.208431 CGTGCCATCCTCATTCTTCTC 58.792 52.381 0.00 0.00 0.00 2.87
7359 12225 1.134280 CCGTGCCATCCTCATTCTTCT 60.134 52.381 0.00 0.00 0.00 2.85
7360 12226 1.134401 TCCGTGCCATCCTCATTCTTC 60.134 52.381 0.00 0.00 0.00 2.87
7361 12227 0.911769 TCCGTGCCATCCTCATTCTT 59.088 50.000 0.00 0.00 0.00 2.52
7362 12228 1.135094 ATCCGTGCCATCCTCATTCT 58.865 50.000 0.00 0.00 0.00 2.40
7363 12229 1.605710 CAATCCGTGCCATCCTCATTC 59.394 52.381 0.00 0.00 0.00 2.67
7364 12230 1.683943 CAATCCGTGCCATCCTCATT 58.316 50.000 0.00 0.00 0.00 2.57
7365 12231 0.179009 CCAATCCGTGCCATCCTCAT 60.179 55.000 0.00 0.00 0.00 2.90
7366 12232 1.224315 CCAATCCGTGCCATCCTCA 59.776 57.895 0.00 0.00 0.00 3.86
7367 12233 0.815615 GTCCAATCCGTGCCATCCTC 60.816 60.000 0.00 0.00 0.00 3.71
7368 12234 1.224592 GTCCAATCCGTGCCATCCT 59.775 57.895 0.00 0.00 0.00 3.24
7369 12235 1.077787 TGTCCAATCCGTGCCATCC 60.078 57.895 0.00 0.00 0.00 3.51
7370 12236 1.705337 CGTGTCCAATCCGTGCCATC 61.705 60.000 0.00 0.00 0.00 3.51
7371 12237 1.745115 CGTGTCCAATCCGTGCCAT 60.745 57.895 0.00 0.00 0.00 4.40
7372 12238 2.358125 CGTGTCCAATCCGTGCCA 60.358 61.111 0.00 0.00 0.00 4.92
7373 12239 3.124921 CCGTGTCCAATCCGTGCC 61.125 66.667 0.00 0.00 0.00 5.01
7374 12240 2.358247 ACCGTGTCCAATCCGTGC 60.358 61.111 0.00 0.00 0.00 5.34
7375 12241 2.032634 CCACCGTGTCCAATCCGTG 61.033 63.158 0.00 0.00 0.00 4.94
7376 12242 2.345991 CCACCGTGTCCAATCCGT 59.654 61.111 0.00 0.00 0.00 4.69
7377 12243 3.124921 GCCACCGTGTCCAATCCG 61.125 66.667 0.00 0.00 0.00 4.18
7378 12244 2.033448 TGCCACCGTGTCCAATCC 59.967 61.111 0.00 0.00 0.00 3.01
7379 12245 2.690778 GCTGCCACCGTGTCCAATC 61.691 63.158 0.00 0.00 0.00 2.67
7380 12246 2.672996 GCTGCCACCGTGTCCAAT 60.673 61.111 0.00 0.00 0.00 3.16
7388 12254 4.781959 CATTTGCCGCTGCCACCG 62.782 66.667 0.00 0.00 36.33 4.94
7392 12258 4.722855 AACGCATTTGCCGCTGCC 62.723 61.111 0.00 0.00 37.91 4.85
7393 12259 2.734346 AAACGCATTTGCCGCTGC 60.734 55.556 0.00 0.00 37.91 5.25
7394 12260 0.733566 ATCAAACGCATTTGCCGCTG 60.734 50.000 0.00 0.00 44.22 5.18
7395 12261 0.733566 CATCAAACGCATTTGCCGCT 60.734 50.000 0.00 0.00 44.22 5.52
7396 12262 0.732196 TCATCAAACGCATTTGCCGC 60.732 50.000 0.00 0.00 44.22 6.53
7397 12263 1.261989 CTCATCAAACGCATTTGCCG 58.738 50.000 0.00 0.00 44.22 5.69
7398 12264 1.632422 CCTCATCAAACGCATTTGCC 58.368 50.000 0.00 0.00 44.22 4.52
7399 12265 1.202114 TCCCTCATCAAACGCATTTGC 59.798 47.619 0.00 0.00 44.22 3.68
7400 12266 2.415893 GGTCCCTCATCAAACGCATTTG 60.416 50.000 0.00 0.00 45.67 2.32
7419 12285 1.751927 CCCTCCTGTACTACGCGGT 60.752 63.158 12.47 1.27 0.00 5.68
7444 12310 1.216122 GCGATGCCAAGACTGAGATC 58.784 55.000 0.00 0.00 0.00 2.75
7484 12350 4.195334 CCCCGCCCCAATCCTCTG 62.195 72.222 0.00 0.00 0.00 3.35
7503 12369 2.582498 GGTCATCCTCGCGAACCG 60.582 66.667 11.33 0.00 38.61 4.44
7504 12370 2.202892 GGGTCATCCTCGCGAACC 60.203 66.667 16.80 16.80 0.00 3.62
7506 12372 2.721167 CCTGGGTCATCCTCGCGAA 61.721 63.158 11.33 0.00 36.20 4.70
7507 12373 3.147595 CCTGGGTCATCCTCGCGA 61.148 66.667 9.26 9.26 36.20 5.87
7508 12374 4.899239 GCCTGGGTCATCCTCGCG 62.899 72.222 0.00 0.00 36.20 5.87
7568 12443 5.722021 AAAAATCAACCCTCGCTTTACAT 57.278 34.783 0.00 0.00 0.00 2.29
7610 12485 1.971357 CACTGACCCAACTCTACCAGT 59.029 52.381 0.00 0.00 36.64 4.00
7612 12487 0.685097 GCACTGACCCAACTCTACCA 59.315 55.000 0.00 0.00 0.00 3.25
7615 12490 4.832248 CAATTAGCACTGACCCAACTCTA 58.168 43.478 0.00 0.00 0.00 2.43
7648 12523 6.252995 ACAGCCTAAATTCACCCAATCTTTA 58.747 36.000 0.00 0.00 0.00 1.85
7654 12529 2.896685 CCAACAGCCTAAATTCACCCAA 59.103 45.455 0.00 0.00 0.00 4.12
7870 12751 0.108329 AAGGCATCCGGTGTTAGTCG 60.108 55.000 0.00 0.00 0.00 4.18
8200 15389 3.149436 TGCAACAGAACAAGAAACAGC 57.851 42.857 0.00 0.00 0.00 4.40
8546 15736 5.050363 TGTCTGATAGTCGAAGTTTTTGTGC 60.050 40.000 0.00 0.00 0.00 4.57
8725 15915 5.294306 TCAGCAATCAAACGGATCATAAGAC 59.706 40.000 0.00 0.00 34.28 3.01
8726 15916 5.294306 GTCAGCAATCAAACGGATCATAAGA 59.706 40.000 0.00 0.00 34.28 2.10
8727 15917 5.505286 GTCAGCAATCAAACGGATCATAAG 58.495 41.667 0.00 0.00 34.28 1.73
8728 15918 4.033932 CGTCAGCAATCAAACGGATCATAA 59.966 41.667 0.00 0.00 34.28 1.90
8729 15919 3.555547 CGTCAGCAATCAAACGGATCATA 59.444 43.478 0.00 0.00 34.28 2.15
8760 15950 8.198109 CAGCATGATAGAGATGATGATGATGTA 58.802 37.037 0.00 0.00 43.31 2.29
8805 15999 7.888021 AGTACACAGGTCAAATTGGATAAATCA 59.112 33.333 0.00 0.00 0.00 2.57
8834 16028 6.912203 TTTGAGTTTCAATCGTACTGTTCA 57.088 33.333 0.00 0.00 36.11 3.18
8835 16029 7.572759 TCATTTGAGTTTCAATCGTACTGTTC 58.427 34.615 0.00 0.00 36.11 3.18
8836 16030 7.490962 TCATTTGAGTTTCAATCGTACTGTT 57.509 32.000 0.00 0.00 36.11 3.16
8837 16031 7.490962 TTCATTTGAGTTTCAATCGTACTGT 57.509 32.000 0.00 0.00 36.11 3.55
8838 16032 8.070171 ACTTTCATTTGAGTTTCAATCGTACTG 58.930 33.333 0.00 0.00 36.11 2.74
8852 16046 5.452078 TGTTTGGCCTACTTTCATTTGAG 57.548 39.130 3.32 0.00 0.00 3.02
8860 16054 4.321675 CGCCTTTATTGTTTGGCCTACTTT 60.322 41.667 3.32 0.00 42.15 2.66
8872 16066 4.876107 CACTGGATACTTCGCCTTTATTGT 59.124 41.667 0.00 0.00 37.61 2.71
8900 16094 7.496529 TTTTCAGATTTTCACTGAGTACCTG 57.503 36.000 0.00 0.00 43.67 4.00
9061 16266 4.225267 GGGAAGAGTTAGATTGGAGTTGGA 59.775 45.833 0.00 0.00 0.00 3.53
9107 16312 1.602605 CGGCCGGGGAAGAGTTTTT 60.603 57.895 20.10 0.00 0.00 1.94
9108 16313 2.033602 CGGCCGGGGAAGAGTTTT 59.966 61.111 20.10 0.00 0.00 2.43
9109 16314 3.246880 ACGGCCGGGGAAGAGTTT 61.247 61.111 31.76 0.00 0.00 2.66
9153 16358 2.665185 GCTCGAAACTGCCGTGGT 60.665 61.111 0.00 0.00 0.00 4.16
9161 16366 1.374758 CGCAGGAAGGCTCGAAACT 60.375 57.895 0.00 0.00 0.00 2.66
9238 16449 1.459455 GCCTGCCGATGAGAGCTCTA 61.459 60.000 18.25 5.78 0.00 2.43
9272 16483 3.374402 CGGCGTCCTCACCTCAGT 61.374 66.667 0.00 0.00 0.00 3.41
9392 16604 2.052690 ACTGCGGCTGGTCTATCGT 61.053 57.895 11.64 0.00 0.00 3.73
9396 16608 2.603473 ACCACTGCGGCTGGTCTA 60.603 61.111 8.00 0.00 37.47 2.59
9455 16667 2.048222 CCACTGTCATCGTGGCGT 60.048 61.111 0.00 0.00 44.70 5.68
9492 16704 2.758327 TGATGGACGCGGCTACCT 60.758 61.111 13.91 0.00 0.00 3.08
9516 16728 1.934220 GAGGTCGACGCATCTGGACA 61.934 60.000 9.92 0.00 0.00 4.02
9572 16784 5.907391 ACAATTTTTCAGAGAAAAGCGTACG 59.093 36.000 11.84 11.84 32.54 3.67
9573 16785 8.068380 ACTACAATTTTTCAGAGAAAAGCGTAC 58.932 33.333 5.24 0.00 32.54 3.67
9574 16786 8.149973 ACTACAATTTTTCAGAGAAAAGCGTA 57.850 30.769 5.24 7.32 32.54 4.42
9695 16907 5.008217 TGCACAACTCCAACACTAACAATAC 59.992 40.000 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.