Multiple sequence alignment - TraesCS2D01G338500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G338500 chr2D 100.000 2905 0 0 1 2905 431967752 431970656 0.000000e+00 5365
1 TraesCS2D01G338500 chr2D 88.399 862 75 14 2066 2905 101555149 101554291 0.000000e+00 1014
2 TraesCS2D01G338500 chr2D 86.790 863 93 7 2064 2905 187125750 187124888 0.000000e+00 942
3 TraesCS2D01G338500 chr2A 92.759 1312 57 17 747 2039 554521059 554519767 0.000000e+00 1862
4 TraesCS2D01G338500 chr2A 90.130 537 42 5 1 531 554521587 554521056 0.000000e+00 688
5 TraesCS2D01G338500 chr2B 96.316 1113 34 5 933 2039 510786533 510787644 0.000000e+00 1821
6 TraesCS2D01G338500 chr2B 83.840 724 95 10 2066 2768 138749095 138748373 0.000000e+00 669
7 TraesCS2D01G338500 chr2B 82.810 541 75 14 1 531 510784853 510785385 4.380000e-128 468
8 TraesCS2D01G338500 chr2B 93.119 218 10 3 536 748 39465825 39465608 6.040000e-82 315
9 TraesCS2D01G338500 chr3A 86.860 860 90 7 2066 2903 55065548 55066406 0.000000e+00 941
10 TraesCS2D01G338500 chr7A 86.079 862 96 13 2066 2905 137016426 137015567 0.000000e+00 905
11 TraesCS2D01G338500 chr3B 85.215 859 106 5 2066 2903 422913189 422912331 0.000000e+00 863
12 TraesCS2D01G338500 chr5A 85.194 851 106 14 2066 2905 227766270 227765429 0.000000e+00 856
13 TraesCS2D01G338500 chr1D 82.428 865 124 14 2066 2905 487970121 487969260 0.000000e+00 730
14 TraesCS2D01G338500 chr3D 84.167 720 85 13 2064 2760 564202590 564201877 0.000000e+00 671
15 TraesCS2D01G338500 chr1B 94.570 221 9 2 534 751 304122947 304122727 3.590000e-89 339
16 TraesCS2D01G338500 chr1B 91.703 229 13 4 526 749 665021367 665021594 2.170000e-81 313
17 TraesCS2D01G338500 chr4D 93.043 230 10 4 527 751 341032554 341032782 6.000000e-87 331
18 TraesCS2D01G338500 chr4D 93.488 215 10 3 536 746 12036527 12036313 1.680000e-82 316
19 TraesCS2D01G338500 chr4D 93.119 218 9 4 536 749 121171406 121171621 6.040000e-82 315
20 TraesCS2D01G338500 chr7D 93.578 218 9 3 536 749 615443613 615443397 1.300000e-83 320
21 TraesCS2D01G338500 chr6B 93.119 218 8 4 536 746 435581832 435582049 2.170000e-81 313
22 TraesCS2D01G338500 chr6B 90.987 233 14 5 526 753 29339074 29338844 1.010000e-79 307


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G338500 chr2D 431967752 431970656 2904 False 5365.0 5365 100.0000 1 2905 1 chr2D.!!$F1 2904
1 TraesCS2D01G338500 chr2D 101554291 101555149 858 True 1014.0 1014 88.3990 2066 2905 1 chr2D.!!$R1 839
2 TraesCS2D01G338500 chr2D 187124888 187125750 862 True 942.0 942 86.7900 2064 2905 1 chr2D.!!$R2 841
3 TraesCS2D01G338500 chr2A 554519767 554521587 1820 True 1275.0 1862 91.4445 1 2039 2 chr2A.!!$R1 2038
4 TraesCS2D01G338500 chr2B 510784853 510787644 2791 False 1144.5 1821 89.5630 1 2039 2 chr2B.!!$F1 2038
5 TraesCS2D01G338500 chr2B 138748373 138749095 722 True 669.0 669 83.8400 2066 2768 1 chr2B.!!$R2 702
6 TraesCS2D01G338500 chr3A 55065548 55066406 858 False 941.0 941 86.8600 2066 2903 1 chr3A.!!$F1 837
7 TraesCS2D01G338500 chr7A 137015567 137016426 859 True 905.0 905 86.0790 2066 2905 1 chr7A.!!$R1 839
8 TraesCS2D01G338500 chr3B 422912331 422913189 858 True 863.0 863 85.2150 2066 2903 1 chr3B.!!$R1 837
9 TraesCS2D01G338500 chr5A 227765429 227766270 841 True 856.0 856 85.1940 2066 2905 1 chr5A.!!$R1 839
10 TraesCS2D01G338500 chr1D 487969260 487970121 861 True 730.0 730 82.4280 2066 2905 1 chr1D.!!$R1 839
11 TraesCS2D01G338500 chr3D 564201877 564202590 713 True 671.0 671 84.1670 2064 2760 1 chr3D.!!$R1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 728 0.03759 TCGGGTTGCCATGCTTAACT 59.962 50.0 0.0 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 2934 0.300789 GGCATTTCTACGTACGCTGC 59.699 55.0 16.72 13.85 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.128367 AAAACGCACGGAAACCATTC 57.872 45.000 0.00 0.00 34.66 2.67
94 95 1.966451 CCTTTCGCGGCAAGAAGGT 60.966 57.895 17.46 0.00 0.00 3.50
116 118 2.315925 TGCTTCTTCCCATCGATGAC 57.684 50.000 26.86 5.95 0.00 3.06
133 135 2.124901 CCGGTAGCAAATCCGCCA 60.125 61.111 0.00 0.00 44.63 5.69
205 207 0.179161 ACGACTGCGAGGAAGAATCG 60.179 55.000 0.00 0.00 43.00 3.34
215 217 2.436173 GAGGAAGAATCGGGGATCAAGT 59.564 50.000 0.00 0.00 0.00 3.16
289 291 1.470051 TGAATCCATGGAGACGTCGA 58.530 50.000 21.33 0.00 0.00 4.20
290 292 2.031870 TGAATCCATGGAGACGTCGAT 58.968 47.619 21.33 2.65 0.00 3.59
325 327 2.438434 GAATGGCCACCCACGAGG 60.438 66.667 8.16 0.00 45.77 4.63
352 354 2.331893 CGGTGGAAAAGATGCGGCA 61.332 57.895 4.58 4.58 0.00 5.69
378 380 0.322277 AGAGGAACTACTCGACGGCA 60.322 55.000 0.00 0.00 41.55 5.69
399 401 4.796495 GGTGGGCCGGGCAGTAAG 62.796 72.222 30.95 0.00 0.00 2.34
400 402 3.712907 GTGGGCCGGGCAGTAAGA 61.713 66.667 30.95 2.53 0.00 2.10
402 404 2.437895 GGGCCGGGCAGTAAGAAC 60.438 66.667 30.95 5.52 0.00 3.01
403 405 2.437895 GGCCGGGCAGTAAGAACC 60.438 66.667 25.33 0.00 0.00 3.62
404 406 2.349755 GCCGGGCAGTAAGAACCA 59.650 61.111 15.62 0.00 0.00 3.67
406 408 0.679960 GCCGGGCAGTAAGAACCAAT 60.680 55.000 15.62 0.00 0.00 3.16
451 460 1.374758 CGAGCTGAAACTTCCGCCT 60.375 57.895 0.00 0.00 38.04 5.52
495 506 2.287915 GGGAAACTGCACATATACAGCG 59.712 50.000 0.00 0.00 37.42 5.18
518 529 3.246416 AGGGGTCGAATATACAGCTCT 57.754 47.619 0.00 0.00 0.00 4.09
550 561 5.751243 AAATCGAAATCCAATAACTCCCG 57.249 39.130 0.00 0.00 0.00 5.14
551 562 4.682778 ATCGAAATCCAATAACTCCCGA 57.317 40.909 0.00 0.00 0.00 5.14
552 563 4.475051 TCGAAATCCAATAACTCCCGAA 57.525 40.909 0.00 0.00 0.00 4.30
553 564 4.186159 TCGAAATCCAATAACTCCCGAAC 58.814 43.478 0.00 0.00 0.00 3.95
554 565 3.000925 CGAAATCCAATAACTCCCGAACG 59.999 47.826 0.00 0.00 0.00 3.95
555 566 3.622166 AATCCAATAACTCCCGAACGT 57.378 42.857 0.00 0.00 0.00 3.99
556 567 3.622166 ATCCAATAACTCCCGAACGTT 57.378 42.857 0.00 0.00 0.00 3.99
557 568 2.963432 TCCAATAACTCCCGAACGTTC 58.037 47.619 18.47 18.47 0.00 3.95
568 579 1.865725 CGAACGTTCGGATTTTGAGC 58.134 50.000 36.53 4.05 46.30 4.26
569 580 1.193650 CGAACGTTCGGATTTTGAGCA 59.806 47.619 36.53 0.00 46.30 4.26
570 581 2.159707 CGAACGTTCGGATTTTGAGCAT 60.160 45.455 36.53 0.00 46.30 3.79
571 582 3.666902 CGAACGTTCGGATTTTGAGCATT 60.667 43.478 36.53 0.00 46.30 3.56
572 583 3.915437 ACGTTCGGATTTTGAGCATTT 57.085 38.095 0.00 0.00 0.00 2.32
573 584 3.821841 ACGTTCGGATTTTGAGCATTTC 58.178 40.909 0.00 0.00 0.00 2.17
574 585 2.840176 CGTTCGGATTTTGAGCATTTCG 59.160 45.455 0.00 0.00 0.00 3.46
575 586 3.666902 CGTTCGGATTTTGAGCATTTCGT 60.667 43.478 0.00 0.00 0.00 3.85
576 587 3.740044 TCGGATTTTGAGCATTTCGTC 57.260 42.857 0.00 0.00 0.00 4.20
577 588 2.418628 TCGGATTTTGAGCATTTCGTCC 59.581 45.455 0.00 0.00 0.00 4.79
578 589 2.477863 CGGATTTTGAGCATTTCGTCCC 60.478 50.000 0.00 0.00 0.00 4.46
579 590 2.477863 GGATTTTGAGCATTTCGTCCCG 60.478 50.000 0.00 0.00 0.00 5.14
580 591 1.885560 TTTTGAGCATTTCGTCCCGA 58.114 45.000 0.00 0.00 0.00 5.14
581 592 1.885560 TTTGAGCATTTCGTCCCGAA 58.114 45.000 0.00 0.00 44.28 4.30
582 593 1.153353 TTGAGCATTTCGTCCCGAAC 58.847 50.000 0.00 0.00 45.64 3.95
590 601 4.199130 CGTCCCGAACGTTTTTGC 57.801 55.556 0.46 0.00 46.42 3.68
591 602 1.352404 CGTCCCGAACGTTTTTGCA 59.648 52.632 0.46 0.00 46.42 4.08
592 603 0.040781 CGTCCCGAACGTTTTTGCAT 60.041 50.000 0.46 0.00 46.42 3.96
593 604 1.404477 GTCCCGAACGTTTTTGCATG 58.596 50.000 0.46 0.00 0.00 4.06
594 605 0.312416 TCCCGAACGTTTTTGCATGG 59.688 50.000 0.46 0.00 0.00 3.66
595 606 1.281566 CCCGAACGTTTTTGCATGGC 61.282 55.000 0.46 0.00 0.00 4.40
596 607 0.596083 CCGAACGTTTTTGCATGGCA 60.596 50.000 0.46 0.00 36.47 4.92
618 629 4.439253 ACTTTAGTTGATAGGGGATGGC 57.561 45.455 0.00 0.00 0.00 4.40
619 630 3.785887 ACTTTAGTTGATAGGGGATGGCA 59.214 43.478 0.00 0.00 0.00 4.92
620 631 4.229582 ACTTTAGTTGATAGGGGATGGCAA 59.770 41.667 0.00 0.00 0.00 4.52
621 632 2.736670 AGTTGATAGGGGATGGCAAC 57.263 50.000 0.00 0.00 39.17 4.17
622 633 2.208872 AGTTGATAGGGGATGGCAACT 58.791 47.619 0.00 0.00 42.92 3.16
623 634 2.582636 AGTTGATAGGGGATGGCAACTT 59.417 45.455 0.00 0.00 44.68 2.66
624 635 3.011708 AGTTGATAGGGGATGGCAACTTT 59.988 43.478 0.00 0.00 44.68 2.66
625 636 3.017048 TGATAGGGGATGGCAACTTTG 57.983 47.619 0.00 0.00 37.61 2.77
626 637 2.311542 TGATAGGGGATGGCAACTTTGT 59.688 45.455 0.00 0.00 37.61 2.83
627 638 2.507407 TAGGGGATGGCAACTTTGTC 57.493 50.000 0.00 0.00 37.61 3.18
628 639 0.779997 AGGGGATGGCAACTTTGTCT 59.220 50.000 0.00 0.00 33.01 3.41
629 640 1.147817 AGGGGATGGCAACTTTGTCTT 59.852 47.619 0.00 0.00 33.01 3.01
630 641 1.970640 GGGGATGGCAACTTTGTCTTT 59.029 47.619 0.00 0.00 33.01 2.52
631 642 2.368548 GGGGATGGCAACTTTGTCTTTT 59.631 45.455 0.00 0.00 33.01 2.27
632 643 3.181455 GGGGATGGCAACTTTGTCTTTTT 60.181 43.478 0.00 0.00 33.01 1.94
633 644 4.058124 GGGATGGCAACTTTGTCTTTTTC 58.942 43.478 0.00 0.00 33.01 2.29
634 645 3.735746 GGATGGCAACTTTGTCTTTTTCG 59.264 43.478 0.00 0.00 33.01 3.46
635 646 3.859411 TGGCAACTTTGTCTTTTTCGT 57.141 38.095 0.00 0.00 33.01 3.85
636 647 4.181309 TGGCAACTTTGTCTTTTTCGTT 57.819 36.364 0.00 0.00 33.01 3.85
637 648 4.561105 TGGCAACTTTGTCTTTTTCGTTT 58.439 34.783 0.00 0.00 33.01 3.60
638 649 4.991687 TGGCAACTTTGTCTTTTTCGTTTT 59.008 33.333 0.00 0.00 33.01 2.43
639 650 5.467063 TGGCAACTTTGTCTTTTTCGTTTTT 59.533 32.000 0.00 0.00 33.01 1.94
659 670 6.601741 TTTTTGTCAGAAAATTGCCATGTC 57.398 33.333 0.00 0.00 0.00 3.06
660 671 3.940209 TGTCAGAAAATTGCCATGTCC 57.060 42.857 0.00 0.00 0.00 4.02
661 672 3.499338 TGTCAGAAAATTGCCATGTCCT 58.501 40.909 0.00 0.00 0.00 3.85
662 673 4.661222 TGTCAGAAAATTGCCATGTCCTA 58.339 39.130 0.00 0.00 0.00 2.94
663 674 5.076182 TGTCAGAAAATTGCCATGTCCTAA 58.924 37.500 0.00 0.00 0.00 2.69
664 675 5.716228 TGTCAGAAAATTGCCATGTCCTAAT 59.284 36.000 0.00 0.00 0.00 1.73
665 676 6.127647 TGTCAGAAAATTGCCATGTCCTAATC 60.128 38.462 0.00 0.00 0.00 1.75
666 677 6.096001 GTCAGAAAATTGCCATGTCCTAATCT 59.904 38.462 0.00 0.00 0.00 2.40
667 678 6.319658 TCAGAAAATTGCCATGTCCTAATCTC 59.680 38.462 0.00 0.00 0.00 2.75
668 679 6.095860 CAGAAAATTGCCATGTCCTAATCTCA 59.904 38.462 0.00 0.00 0.00 3.27
669 680 5.841957 AAATTGCCATGTCCTAATCTCAC 57.158 39.130 0.00 0.00 0.00 3.51
670 681 2.602257 TGCCATGTCCTAATCTCACG 57.398 50.000 0.00 0.00 0.00 4.35
671 682 1.831106 TGCCATGTCCTAATCTCACGT 59.169 47.619 0.00 0.00 0.00 4.49
672 683 3.028130 TGCCATGTCCTAATCTCACGTA 58.972 45.455 0.00 0.00 0.00 3.57
673 684 3.449377 TGCCATGTCCTAATCTCACGTAA 59.551 43.478 0.00 0.00 0.00 3.18
674 685 4.081365 TGCCATGTCCTAATCTCACGTAAA 60.081 41.667 0.00 0.00 0.00 2.01
675 686 4.270325 GCCATGTCCTAATCTCACGTAAAC 59.730 45.833 0.00 0.00 0.00 2.01
676 687 5.661458 CCATGTCCTAATCTCACGTAAACT 58.339 41.667 0.00 0.00 0.00 2.66
677 688 6.682113 GCCATGTCCTAATCTCACGTAAACTA 60.682 42.308 0.00 0.00 0.00 2.24
678 689 7.262772 CCATGTCCTAATCTCACGTAAACTAA 58.737 38.462 0.00 0.00 0.00 2.24
679 690 7.762615 CCATGTCCTAATCTCACGTAAACTAAA 59.237 37.037 0.00 0.00 0.00 1.85
680 691 8.592998 CATGTCCTAATCTCACGTAAACTAAAC 58.407 37.037 0.00 0.00 0.00 2.01
681 692 7.889469 TGTCCTAATCTCACGTAAACTAAACT 58.111 34.615 0.00 0.00 0.00 2.66
682 693 8.362639 TGTCCTAATCTCACGTAAACTAAACTT 58.637 33.333 0.00 0.00 0.00 2.66
683 694 8.645487 GTCCTAATCTCACGTAAACTAAACTTG 58.355 37.037 0.00 0.00 0.00 3.16
684 695 7.330208 TCCTAATCTCACGTAAACTAAACTTGC 59.670 37.037 0.00 0.00 0.00 4.01
685 696 5.857822 ATCTCACGTAAACTAAACTTGCC 57.142 39.130 0.00 0.00 0.00 4.52
686 697 4.695396 TCTCACGTAAACTAAACTTGCCA 58.305 39.130 0.00 0.00 0.00 4.92
687 698 5.302360 TCTCACGTAAACTAAACTTGCCAT 58.698 37.500 0.00 0.00 0.00 4.40
688 699 5.407387 TCTCACGTAAACTAAACTTGCCATC 59.593 40.000 0.00 0.00 0.00 3.51
689 700 5.302360 TCACGTAAACTAAACTTGCCATCT 58.698 37.500 0.00 0.00 0.00 2.90
690 701 6.457355 TCACGTAAACTAAACTTGCCATCTA 58.543 36.000 0.00 0.00 0.00 1.98
691 702 6.930164 TCACGTAAACTAAACTTGCCATCTAA 59.070 34.615 0.00 0.00 0.00 2.10
692 703 7.441760 TCACGTAAACTAAACTTGCCATCTAAA 59.558 33.333 0.00 0.00 0.00 1.85
693 704 7.532884 CACGTAAACTAAACTTGCCATCTAAAC 59.467 37.037 0.00 0.00 0.00 2.01
694 705 7.019418 CGTAAACTAAACTTGCCATCTAAACC 58.981 38.462 0.00 0.00 0.00 3.27
695 706 5.977489 AACTAAACTTGCCATCTAAACCC 57.023 39.130 0.00 0.00 0.00 4.11
696 707 4.007659 ACTAAACTTGCCATCTAAACCCG 58.992 43.478 0.00 0.00 0.00 5.28
697 708 2.579410 AACTTGCCATCTAAACCCGT 57.421 45.000 0.00 0.00 0.00 5.28
698 709 2.579410 ACTTGCCATCTAAACCCGTT 57.421 45.000 0.00 0.00 0.00 4.44
699 710 2.433436 ACTTGCCATCTAAACCCGTTC 58.567 47.619 0.00 0.00 0.00 3.95
700 711 1.396996 CTTGCCATCTAAACCCGTTCG 59.603 52.381 0.00 0.00 0.00 3.95
701 712 0.391927 TGCCATCTAAACCCGTTCGG 60.392 55.000 4.08 4.08 37.81 4.30
710 721 3.439540 CCCGTTCGGGTTGCCATG 61.440 66.667 20.65 0.00 40.49 3.66
711 722 4.114997 CCGTTCGGGTTGCCATGC 62.115 66.667 3.04 0.00 0.00 4.06
712 723 3.055719 CGTTCGGGTTGCCATGCT 61.056 61.111 0.00 0.00 0.00 3.79
713 724 2.625823 CGTTCGGGTTGCCATGCTT 61.626 57.895 0.00 0.00 0.00 3.91
714 725 1.302383 CGTTCGGGTTGCCATGCTTA 61.302 55.000 0.00 0.00 0.00 3.09
715 726 0.885196 GTTCGGGTTGCCATGCTTAA 59.115 50.000 0.00 0.00 0.00 1.85
716 727 0.885196 TTCGGGTTGCCATGCTTAAC 59.115 50.000 0.00 0.00 0.00 2.01
717 728 0.037590 TCGGGTTGCCATGCTTAACT 59.962 50.000 0.00 0.00 0.00 2.24
718 729 0.451783 CGGGTTGCCATGCTTAACTC 59.548 55.000 0.00 0.00 0.00 3.01
719 730 0.817654 GGGTTGCCATGCTTAACTCC 59.182 55.000 0.00 0.00 0.00 3.85
720 731 0.817654 GGTTGCCATGCTTAACTCCC 59.182 55.000 0.00 0.00 0.00 4.30
721 732 0.451783 GTTGCCATGCTTAACTCCCG 59.548 55.000 0.00 0.00 0.00 5.14
722 733 0.326595 TTGCCATGCTTAACTCCCGA 59.673 50.000 0.00 0.00 0.00 5.14
723 734 0.326595 TGCCATGCTTAACTCCCGAA 59.673 50.000 0.00 0.00 0.00 4.30
724 735 0.733150 GCCATGCTTAACTCCCGAAC 59.267 55.000 0.00 0.00 0.00 3.95
725 736 1.006832 CCATGCTTAACTCCCGAACG 58.993 55.000 0.00 0.00 0.00 3.95
726 737 1.674817 CCATGCTTAACTCCCGAACGT 60.675 52.381 0.00 0.00 0.00 3.99
727 738 2.073816 CATGCTTAACTCCCGAACGTT 58.926 47.619 0.00 0.00 0.00 3.99
728 739 1.787012 TGCTTAACTCCCGAACGTTC 58.213 50.000 18.47 18.47 0.00 3.95
741 752 4.835199 CGAACGTTCGGAAGTTATCATT 57.165 40.909 36.53 0.00 46.30 2.57
742 753 5.937165 CGAACGTTCGGAAGTTATCATTA 57.063 39.130 36.53 0.00 46.30 1.90
743 754 5.711302 CGAACGTTCGGAAGTTATCATTAC 58.289 41.667 36.53 2.36 46.30 1.89
744 755 5.276067 CGAACGTTCGGAAGTTATCATTACC 60.276 44.000 36.53 2.01 46.30 2.85
745 756 4.107622 ACGTTCGGAAGTTATCATTACCG 58.892 43.478 0.00 0.00 41.39 4.02
746 757 4.142403 ACGTTCGGAAGTTATCATTACCGA 60.142 41.667 0.00 0.00 45.76 4.69
772 783 5.613358 AATCAGGTTAAGAGTTTTCGCAG 57.387 39.130 0.00 0.00 0.00 5.18
773 784 4.330944 TCAGGTTAAGAGTTTTCGCAGA 57.669 40.909 0.00 0.00 0.00 4.26
787 798 3.831883 CAGAACATGCCCGGGATG 58.168 61.111 29.31 25.53 0.00 3.51
831 842 2.802792 GGCGGTTATTTTCCGGGC 59.197 61.111 0.00 0.00 46.90 6.13
833 844 3.103875 CGGTTATTTTCCGGGCCG 58.896 61.111 21.46 21.46 43.68 6.13
878 889 5.776173 TCCGCTAGAGATCTCTTAAAAGG 57.224 43.478 29.54 22.74 40.93 3.11
1389 2385 2.820787 CCTGGACTACTTCTTCGTCAGT 59.179 50.000 0.00 0.00 0.00 3.41
1490 2486 3.146066 TGCAGTCGCCTGAAAAAGTATT 58.854 40.909 0.00 0.00 41.50 1.89
1501 2497 5.483583 CCTGAAAAAGTATTTCCCATTCCCA 59.516 40.000 0.00 0.00 37.28 4.37
1559 2568 7.437862 ACCACACAATTGATACATTTTGTTCAC 59.562 33.333 13.59 0.00 0.00 3.18
1569 2578 3.068024 ACATTTTGTTCACATGCTCGGTT 59.932 39.130 0.00 0.00 0.00 4.44
1576 2585 1.616374 TCACATGCTCGGTTCACACTA 59.384 47.619 0.00 0.00 0.00 2.74
1925 2934 1.571919 ATTCTTCGATTCGCCCTTCG 58.428 50.000 0.00 0.00 40.15 3.79
2043 3058 3.299340 TTCTCTACGAAACAGTGAGCC 57.701 47.619 0.00 0.00 0.00 4.70
2044 3059 2.235891 TCTCTACGAAACAGTGAGCCA 58.764 47.619 0.00 0.00 0.00 4.75
2045 3060 2.826128 TCTCTACGAAACAGTGAGCCAT 59.174 45.455 0.00 0.00 0.00 4.40
2046 3061 3.119459 TCTCTACGAAACAGTGAGCCATC 60.119 47.826 0.00 0.00 0.00 3.51
2047 3062 2.094182 TCTACGAAACAGTGAGCCATCC 60.094 50.000 0.00 0.00 0.00 3.51
2048 3063 0.670546 ACGAAACAGTGAGCCATCCG 60.671 55.000 0.00 0.00 0.00 4.18
2049 3064 1.796796 GAAACAGTGAGCCATCCGC 59.203 57.895 0.00 0.00 37.98 5.54
2050 3065 0.955428 GAAACAGTGAGCCATCCGCA 60.955 55.000 0.00 0.00 41.38 5.69
2051 3066 1.237285 AAACAGTGAGCCATCCGCAC 61.237 55.000 0.00 0.00 43.60 5.34
2052 3067 2.821366 CAGTGAGCCATCCGCACC 60.821 66.667 0.00 0.00 44.23 5.01
2053 3068 4.101448 AGTGAGCCATCCGCACCC 62.101 66.667 0.00 0.00 44.23 4.61
2056 3071 4.554036 GAGCCATCCGCACCCCTC 62.554 72.222 0.00 0.00 41.38 4.30
2201 3219 2.655526 GATCTCGCATGGCTGGAGCA 62.656 60.000 0.20 0.00 44.36 4.26
2294 3322 1.237285 GCCGCTGCCCGATATCAATT 61.237 55.000 3.12 0.00 40.02 2.32
2520 3554 1.446272 CTGCGGTCGGAGAACTTCC 60.446 63.158 6.00 0.00 45.87 3.46
2610 3646 0.248289 GTTCCTTTCGTCGGGGATCA 59.752 55.000 0.00 0.00 0.00 2.92
2770 3813 2.956333 TCGATTTCGCCAGAGAAGGATA 59.044 45.455 0.00 0.00 39.60 2.59
2778 3822 2.555199 CCAGAGAAGGATAGCAAACCG 58.445 52.381 0.00 0.00 0.00 4.44
2799 3843 4.090066 CCGAAGTGATTCGAGTGTTTGTAG 59.910 45.833 11.66 0.00 46.52 2.74
2832 3876 1.872773 TTGGTTATGGAATTGGGGGC 58.127 50.000 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 2.027285 TCATCGATGGGAAGAAGCAACA 60.027 45.455 24.61 0.00 0.00 3.33
133 135 2.006991 GGCCATGGGAAGTAGGGGT 61.007 63.158 15.13 0.00 0.00 4.95
189 191 1.517832 CCCGATTCTTCCTCGCAGT 59.482 57.895 0.00 0.00 34.84 4.40
289 291 3.458163 ATCCCGTGGACGCGTGAT 61.458 61.111 20.70 9.40 38.18 3.06
290 292 4.429212 CATCCCGTGGACGCGTGA 62.429 66.667 20.70 6.87 38.18 4.35
325 327 0.671796 CTTTTCCACCGGTTTGGGAC 59.328 55.000 11.54 0.00 44.64 4.46
352 354 1.683629 CGAGTAGTTCCTCTGCCCTCT 60.684 57.143 0.00 0.00 0.00 3.69
361 363 1.881602 GTGCCGTCGAGTAGTTCCT 59.118 57.895 0.00 0.00 0.00 3.36
387 389 0.679960 ATTGGTTCTTACTGCCCGGC 60.680 55.000 1.04 1.04 0.00 6.13
389 391 2.009774 CTCATTGGTTCTTACTGCCCG 58.990 52.381 0.00 0.00 0.00 6.13
393 395 3.310774 CCGCATCTCATTGGTTCTTACTG 59.689 47.826 0.00 0.00 0.00 2.74
394 396 3.535561 CCGCATCTCATTGGTTCTTACT 58.464 45.455 0.00 0.00 0.00 2.24
395 397 2.032178 GCCGCATCTCATTGGTTCTTAC 59.968 50.000 0.00 0.00 0.00 2.34
396 398 2.288666 GCCGCATCTCATTGGTTCTTA 58.711 47.619 0.00 0.00 0.00 2.10
397 399 1.098050 GCCGCATCTCATTGGTTCTT 58.902 50.000 0.00 0.00 0.00 2.52
399 401 0.379669 CTGCCGCATCTCATTGGTTC 59.620 55.000 0.00 0.00 0.00 3.62
400 402 1.660560 GCTGCCGCATCTCATTGGTT 61.661 55.000 0.00 0.00 35.78 3.67
402 404 2.719979 GCTGCCGCATCTCATTGG 59.280 61.111 0.00 0.00 35.78 3.16
403 405 2.326897 CGCTGCCGCATCTCATTG 59.673 61.111 0.00 0.00 35.30 2.82
404 406 2.874648 TTCCGCTGCCGCATCTCATT 62.875 55.000 0.00 0.00 35.30 2.57
406 408 2.026945 TATTCCGCTGCCGCATCTCA 62.027 55.000 0.00 0.00 35.30 3.27
495 506 4.523558 AGAGCTGTATATTCGACCCCTTAC 59.476 45.833 0.00 0.00 0.00 2.34
531 542 4.186159 GTTCGGGAGTTATTGGATTTCGA 58.814 43.478 0.00 0.00 0.00 3.71
532 543 3.000925 CGTTCGGGAGTTATTGGATTTCG 59.999 47.826 0.00 0.00 0.00 3.46
533 544 3.937079 ACGTTCGGGAGTTATTGGATTTC 59.063 43.478 0.00 0.00 0.00 2.17
534 545 3.946606 ACGTTCGGGAGTTATTGGATTT 58.053 40.909 0.00 0.00 0.00 2.17
535 546 3.622166 ACGTTCGGGAGTTATTGGATT 57.378 42.857 0.00 0.00 0.00 3.01
536 547 3.528532 GAACGTTCGGGAGTTATTGGAT 58.471 45.455 13.36 0.00 0.00 3.41
537 548 2.671914 CGAACGTTCGGGAGTTATTGGA 60.672 50.000 36.53 0.00 46.30 3.53
538 549 1.657094 CGAACGTTCGGGAGTTATTGG 59.343 52.381 36.53 9.59 46.30 3.16
550 561 2.961522 TGCTCAAAATCCGAACGTTC 57.038 45.000 18.47 18.47 0.00 3.95
551 562 3.915437 AATGCTCAAAATCCGAACGTT 57.085 38.095 0.00 0.00 0.00 3.99
552 563 3.666902 CGAAATGCTCAAAATCCGAACGT 60.667 43.478 0.00 0.00 0.00 3.99
553 564 2.840176 CGAAATGCTCAAAATCCGAACG 59.160 45.455 0.00 0.00 0.00 3.95
554 565 3.821841 ACGAAATGCTCAAAATCCGAAC 58.178 40.909 0.00 0.00 0.00 3.95
555 566 3.119990 GGACGAAATGCTCAAAATCCGAA 60.120 43.478 0.00 0.00 0.00 4.30
556 567 2.418628 GGACGAAATGCTCAAAATCCGA 59.581 45.455 0.00 0.00 0.00 4.55
557 568 2.477863 GGGACGAAATGCTCAAAATCCG 60.478 50.000 0.00 0.00 0.00 4.18
558 569 3.150848 GGGACGAAATGCTCAAAATCC 57.849 47.619 0.00 0.00 0.00 3.01
574 585 1.404477 CATGCAAAAACGTTCGGGAC 58.596 50.000 0.00 0.00 0.00 4.46
575 586 0.312416 CCATGCAAAAACGTTCGGGA 59.688 50.000 0.00 0.00 0.00 5.14
576 587 1.281566 GCCATGCAAAAACGTTCGGG 61.282 55.000 0.00 0.00 0.00 5.14
577 588 0.596083 TGCCATGCAAAAACGTTCGG 60.596 50.000 0.00 0.00 34.76 4.30
578 589 1.203928 TTGCCATGCAAAAACGTTCG 58.796 45.000 0.00 0.00 45.96 3.95
596 607 4.229582 TGCCATCCCCTATCAACTAAAGTT 59.770 41.667 0.00 0.00 39.12 2.66
597 608 3.785887 TGCCATCCCCTATCAACTAAAGT 59.214 43.478 0.00 0.00 0.00 2.66
598 609 4.437682 TGCCATCCCCTATCAACTAAAG 57.562 45.455 0.00 0.00 0.00 1.85
599 610 4.229582 AGTTGCCATCCCCTATCAACTAAA 59.770 41.667 4.36 0.00 43.60 1.85
600 611 3.785887 AGTTGCCATCCCCTATCAACTAA 59.214 43.478 4.36 0.00 43.60 2.24
601 612 3.393687 AGTTGCCATCCCCTATCAACTA 58.606 45.455 4.36 0.00 43.60 2.24
602 613 2.208872 AGTTGCCATCCCCTATCAACT 58.791 47.619 0.00 0.00 41.50 3.16
603 614 2.736670 AGTTGCCATCCCCTATCAAC 57.263 50.000 0.00 0.00 37.78 3.18
604 615 3.245586 ACAAAGTTGCCATCCCCTATCAA 60.246 43.478 0.00 0.00 0.00 2.57
605 616 2.311542 ACAAAGTTGCCATCCCCTATCA 59.688 45.455 0.00 0.00 0.00 2.15
606 617 2.952310 GACAAAGTTGCCATCCCCTATC 59.048 50.000 0.00 0.00 0.00 2.08
607 618 2.582636 AGACAAAGTTGCCATCCCCTAT 59.417 45.455 0.00 0.00 0.00 2.57
608 619 1.992557 AGACAAAGTTGCCATCCCCTA 59.007 47.619 0.00 0.00 0.00 3.53
609 620 0.779997 AGACAAAGTTGCCATCCCCT 59.220 50.000 0.00 0.00 0.00 4.79
610 621 1.632589 AAGACAAAGTTGCCATCCCC 58.367 50.000 0.00 0.00 0.00 4.81
611 622 3.751479 AAAAGACAAAGTTGCCATCCC 57.249 42.857 0.00 0.00 0.00 3.85
612 623 3.735746 CGAAAAAGACAAAGTTGCCATCC 59.264 43.478 0.00 0.00 0.00 3.51
613 624 4.359706 ACGAAAAAGACAAAGTTGCCATC 58.640 39.130 0.00 0.00 0.00 3.51
614 625 4.385358 ACGAAAAAGACAAAGTTGCCAT 57.615 36.364 0.00 0.00 0.00 4.40
615 626 3.859411 ACGAAAAAGACAAAGTTGCCA 57.141 38.095 0.00 0.00 0.00 4.92
616 627 5.524511 AAAACGAAAAAGACAAAGTTGCC 57.475 34.783 0.00 0.00 0.00 4.52
636 647 5.526846 GGACATGGCAATTTTCTGACAAAAA 59.473 36.000 0.00 0.00 38.03 1.94
637 648 5.055812 GGACATGGCAATTTTCTGACAAAA 58.944 37.500 0.00 0.00 38.03 2.44
638 649 4.344679 AGGACATGGCAATTTTCTGACAAA 59.655 37.500 0.00 0.00 38.03 2.83
639 650 3.896888 AGGACATGGCAATTTTCTGACAA 59.103 39.130 0.00 0.00 38.03 3.18
640 651 3.499338 AGGACATGGCAATTTTCTGACA 58.501 40.909 0.00 0.00 39.14 3.58
641 652 5.643379 TTAGGACATGGCAATTTTCTGAC 57.357 39.130 0.00 0.00 0.00 3.51
642 653 6.189859 AGATTAGGACATGGCAATTTTCTGA 58.810 36.000 0.00 0.00 0.00 3.27
643 654 6.095860 TGAGATTAGGACATGGCAATTTTCTG 59.904 38.462 0.00 0.00 0.00 3.02
644 655 6.096001 GTGAGATTAGGACATGGCAATTTTCT 59.904 38.462 0.00 0.00 0.00 2.52
645 656 6.268566 GTGAGATTAGGACATGGCAATTTTC 58.731 40.000 0.00 0.00 0.00 2.29
646 657 5.163622 CGTGAGATTAGGACATGGCAATTTT 60.164 40.000 0.00 0.00 0.00 1.82
647 658 4.336433 CGTGAGATTAGGACATGGCAATTT 59.664 41.667 0.00 0.00 0.00 1.82
648 659 3.879295 CGTGAGATTAGGACATGGCAATT 59.121 43.478 0.00 0.00 0.00 2.32
649 660 3.118261 ACGTGAGATTAGGACATGGCAAT 60.118 43.478 0.00 0.00 0.00 3.56
650 661 2.236146 ACGTGAGATTAGGACATGGCAA 59.764 45.455 0.00 0.00 0.00 4.52
651 662 1.831106 ACGTGAGATTAGGACATGGCA 59.169 47.619 0.00 0.00 0.00 4.92
652 663 2.604046 ACGTGAGATTAGGACATGGC 57.396 50.000 0.00 0.00 0.00 4.40
653 664 5.661458 AGTTTACGTGAGATTAGGACATGG 58.339 41.667 0.00 0.00 0.00 3.66
654 665 8.592998 GTTTAGTTTACGTGAGATTAGGACATG 58.407 37.037 0.00 0.00 0.00 3.21
655 666 8.529476 AGTTTAGTTTACGTGAGATTAGGACAT 58.471 33.333 0.00 0.00 0.00 3.06
656 667 7.889469 AGTTTAGTTTACGTGAGATTAGGACA 58.111 34.615 0.00 0.00 0.00 4.02
657 668 8.645487 CAAGTTTAGTTTACGTGAGATTAGGAC 58.355 37.037 0.00 0.00 0.00 3.85
658 669 7.330208 GCAAGTTTAGTTTACGTGAGATTAGGA 59.670 37.037 0.00 0.00 0.00 2.94
659 670 7.412672 GGCAAGTTTAGTTTACGTGAGATTAGG 60.413 40.741 0.00 0.00 0.00 2.69
660 671 7.117236 TGGCAAGTTTAGTTTACGTGAGATTAG 59.883 37.037 0.00 0.00 0.00 1.73
661 672 6.930164 TGGCAAGTTTAGTTTACGTGAGATTA 59.070 34.615 0.00 0.00 0.00 1.75
662 673 5.761234 TGGCAAGTTTAGTTTACGTGAGATT 59.239 36.000 0.00 0.00 0.00 2.40
663 674 5.302360 TGGCAAGTTTAGTTTACGTGAGAT 58.698 37.500 0.00 0.00 0.00 2.75
664 675 4.695396 TGGCAAGTTTAGTTTACGTGAGA 58.305 39.130 0.00 0.00 0.00 3.27
665 676 5.408604 AGATGGCAAGTTTAGTTTACGTGAG 59.591 40.000 0.00 0.00 0.00 3.51
666 677 5.302360 AGATGGCAAGTTTAGTTTACGTGA 58.698 37.500 0.00 0.00 0.00 4.35
667 678 5.607119 AGATGGCAAGTTTAGTTTACGTG 57.393 39.130 0.00 0.00 0.00 4.49
668 679 7.308169 GGTTTAGATGGCAAGTTTAGTTTACGT 60.308 37.037 0.00 0.00 0.00 3.57
669 680 7.019418 GGTTTAGATGGCAAGTTTAGTTTACG 58.981 38.462 0.00 0.00 0.00 3.18
670 681 7.310664 GGGTTTAGATGGCAAGTTTAGTTTAC 58.689 38.462 0.00 0.00 0.00 2.01
671 682 6.149807 CGGGTTTAGATGGCAAGTTTAGTTTA 59.850 38.462 0.00 0.00 0.00 2.01
672 683 5.048294 CGGGTTTAGATGGCAAGTTTAGTTT 60.048 40.000 0.00 0.00 0.00 2.66
673 684 4.457949 CGGGTTTAGATGGCAAGTTTAGTT 59.542 41.667 0.00 0.00 0.00 2.24
674 685 4.007659 CGGGTTTAGATGGCAAGTTTAGT 58.992 43.478 0.00 0.00 0.00 2.24
675 686 4.007659 ACGGGTTTAGATGGCAAGTTTAG 58.992 43.478 0.00 0.00 0.00 1.85
676 687 4.023726 ACGGGTTTAGATGGCAAGTTTA 57.976 40.909 0.00 0.00 0.00 2.01
677 688 2.871453 ACGGGTTTAGATGGCAAGTTT 58.129 42.857 0.00 0.00 0.00 2.66
678 689 2.579410 ACGGGTTTAGATGGCAAGTT 57.421 45.000 0.00 0.00 0.00 2.66
679 690 2.433436 GAACGGGTTTAGATGGCAAGT 58.567 47.619 0.00 0.00 0.00 3.16
680 691 1.396996 CGAACGGGTTTAGATGGCAAG 59.603 52.381 0.00 0.00 0.00 4.01
681 692 1.444836 CGAACGGGTTTAGATGGCAA 58.555 50.000 0.00 0.00 0.00 4.52
682 693 0.391927 CCGAACGGGTTTAGATGGCA 60.392 55.000 5.25 0.00 0.00 4.92
683 694 2.390427 CCGAACGGGTTTAGATGGC 58.610 57.895 5.25 0.00 0.00 4.40
694 705 4.114997 GCATGGCAACCCGAACGG 62.115 66.667 6.25 6.25 37.81 4.44
695 706 1.302383 TAAGCATGGCAACCCGAACG 61.302 55.000 0.00 0.00 0.00 3.95
696 707 0.885196 TTAAGCATGGCAACCCGAAC 59.115 50.000 0.00 0.00 0.00 3.95
697 708 0.885196 GTTAAGCATGGCAACCCGAA 59.115 50.000 0.00 0.00 0.00 4.30
698 709 0.037590 AGTTAAGCATGGCAACCCGA 59.962 50.000 0.00 0.00 0.00 5.14
699 710 0.451783 GAGTTAAGCATGGCAACCCG 59.548 55.000 0.00 0.00 0.00 5.28
700 711 0.817654 GGAGTTAAGCATGGCAACCC 59.182 55.000 0.00 0.00 0.00 4.11
701 712 0.817654 GGGAGTTAAGCATGGCAACC 59.182 55.000 0.00 0.00 0.00 3.77
702 713 0.451783 CGGGAGTTAAGCATGGCAAC 59.548 55.000 0.00 0.00 0.00 4.17
703 714 0.326595 TCGGGAGTTAAGCATGGCAA 59.673 50.000 0.00 0.00 0.00 4.52
704 715 0.326595 TTCGGGAGTTAAGCATGGCA 59.673 50.000 0.00 0.00 0.00 4.92
705 716 0.733150 GTTCGGGAGTTAAGCATGGC 59.267 55.000 0.00 0.00 0.00 4.40
706 717 1.006832 CGTTCGGGAGTTAAGCATGG 58.993 55.000 0.00 0.00 0.00 3.66
707 718 1.722011 ACGTTCGGGAGTTAAGCATG 58.278 50.000 0.00 0.00 0.00 4.06
708 719 2.344025 GAACGTTCGGGAGTTAAGCAT 58.656 47.619 13.36 0.00 0.00 3.79
709 720 1.787012 GAACGTTCGGGAGTTAAGCA 58.213 50.000 13.36 0.00 0.00 3.91
710 721 0.712222 CGAACGTTCGGGAGTTAAGC 59.288 55.000 36.53 4.05 46.30 3.09
721 732 5.276067 CGGTAATGATAACTTCCGAACGTTC 60.276 44.000 18.47 18.47 40.29 3.95
722 733 4.563976 CGGTAATGATAACTTCCGAACGTT 59.436 41.667 0.00 0.00 40.29 3.99
723 734 4.107622 CGGTAATGATAACTTCCGAACGT 58.892 43.478 0.00 0.00 40.29 3.99
724 735 4.353737 TCGGTAATGATAACTTCCGAACG 58.646 43.478 0.00 0.00 42.95 3.95
747 758 6.801575 TGCGAAAACTCTTAACCTGATTTTT 58.198 32.000 0.00 0.00 31.90 1.94
748 759 6.262273 TCTGCGAAAACTCTTAACCTGATTTT 59.738 34.615 0.00 0.00 0.00 1.82
749 760 5.763204 TCTGCGAAAACTCTTAACCTGATTT 59.237 36.000 0.00 0.00 0.00 2.17
752 763 4.330944 TCTGCGAAAACTCTTAACCTGA 57.669 40.909 0.00 0.00 0.00 3.86
772 783 0.894835 AAAACATCCCGGGCATGTTC 59.105 50.000 32.96 0.00 42.47 3.18
773 784 1.347062 AAAAACATCCCGGGCATGTT 58.653 45.000 30.11 30.11 44.67 2.71
801 812 1.505425 AACCGCCGTCTTTACAGTTC 58.495 50.000 0.00 0.00 0.00 3.01
805 816 3.436359 GGAAAATAACCGCCGTCTTTACA 59.564 43.478 0.00 0.00 0.00 2.41
846 857 3.705043 TCTCTAGCGGATCCGTAAAAC 57.295 47.619 33.33 17.48 42.09 2.43
878 889 2.776536 CCAGATCCCATCCTATCCCATC 59.223 54.545 0.00 0.00 0.00 3.51
1389 2385 2.525629 TGCTCCCGGTTGAGGTCA 60.526 61.111 9.44 0.00 32.81 4.02
1490 2486 1.211567 ACGGTGGATGGGAATGGGAA 61.212 55.000 0.00 0.00 0.00 3.97
1501 2497 3.375699 AGAGGATAAGAACACGGTGGAT 58.624 45.455 13.48 0.32 0.00 3.41
1559 2568 2.688507 AGTTAGTGTGAACCGAGCATG 58.311 47.619 0.00 0.00 0.00 4.06
1569 2578 8.570068 AAAACCTTACAAAGAAGTTAGTGTGA 57.430 30.769 0.00 0.00 0.00 3.58
1576 2585 4.496840 CCGCGAAAACCTTACAAAGAAGTT 60.497 41.667 8.23 0.00 0.00 2.66
1925 2934 0.300789 GGCATTTCTACGTACGCTGC 59.699 55.000 16.72 13.85 0.00 5.25
2027 3042 2.271800 GGATGGCTCACTGTTTCGTAG 58.728 52.381 0.00 0.00 0.00 3.51
2039 3054 4.554036 GAGGGGTGCGGATGGCTC 62.554 72.222 0.00 0.00 44.05 4.70
2048 3063 4.554036 GAGCCATCCGAGGGGTGC 62.554 72.222 8.83 0.00 35.99 5.01
2049 3064 3.866582 GGAGCCATCCGAGGGGTG 61.867 72.222 8.83 0.00 35.99 4.61
2057 3072 2.851588 GAGGGGAGGGAGCCATCC 60.852 72.222 11.66 11.66 45.85 3.51
2058 3073 2.851588 GGAGGGGAGGGAGCCATC 60.852 72.222 0.00 0.00 0.00 3.51
2059 3074 4.523282 GGGAGGGGAGGGAGCCAT 62.523 72.222 0.00 0.00 0.00 4.40
2062 3077 4.890306 GAGGGGAGGGGAGGGAGC 62.890 77.778 0.00 0.00 0.00 4.70
2287 3315 1.406180 TCCGGCGAGTTCGAATTGATA 59.594 47.619 9.30 0.00 43.02 2.15
2448 3480 2.741055 GCCCAGAAGAGGAGCTCCC 61.741 68.421 29.54 19.90 36.42 4.30
2680 3722 1.113517 TACCTATCTCACCAGGCCGC 61.114 60.000 0.00 0.00 35.14 6.53
2681 3723 1.273606 CATACCTATCTCACCAGGCCG 59.726 57.143 0.00 0.00 35.14 6.13
2778 3822 5.690409 TGACTACAAACACTCGAATCACTTC 59.310 40.000 0.00 0.00 0.00 3.01
2799 3843 2.586648 AACCAAATCCTCACCCTGAC 57.413 50.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.