Multiple sequence alignment - TraesCS2D01G337700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G337700 chr2D 100.000 3762 0 0 1 3762 431430066 431426305 0.000000e+00 6948.0
1 TraesCS2D01G337700 chr2D 100.000 1356 0 0 4039 5394 431426028 431424673 0.000000e+00 2505.0
2 TraesCS2D01G337700 chr2D 82.375 1617 279 5 2150 3762 27639207 27637593 0.000000e+00 1402.0
3 TraesCS2D01G337700 chr2D 85.962 1040 82 25 893 1904 431385854 431384851 0.000000e+00 1053.0
4 TraesCS2D01G337700 chr2D 85.495 1041 86 22 893 1904 431005887 431004883 0.000000e+00 1026.0
5 TraesCS2D01G337700 chr2D 87.732 701 58 14 4095 4790 431384864 431384187 0.000000e+00 793.0
6 TraesCS2D01G337700 chr2D 87.462 662 52 15 4251 4906 431004770 431004134 0.000000e+00 734.0
7 TraesCS2D01G337700 chr2D 83.716 522 36 15 4901 5394 431381919 431381419 1.070000e-121 448.0
8 TraesCS2D01G337700 chr2D 83.174 523 36 17 4901 5394 431003978 431003479 1.070000e-116 431.0
9 TraesCS2D01G337700 chr2D 89.313 131 11 2 4095 4222 431004896 431004766 1.550000e-35 161.0
10 TraesCS2D01G337700 chr2D 98.276 58 0 1 4039 4096 378913580 378913636 3.440000e-17 100.0
11 TraesCS2D01G337700 chr2D 97.561 41 1 0 1914 1954 431427433 431427393 2.700000e-08 71.3
12 TraesCS2D01G337700 chr3B 90.152 1777 168 5 1990 3762 633190346 633188573 0.000000e+00 2305.0
13 TraesCS2D01G337700 chr3B 85.211 284 34 3 4572 4854 266688436 266688160 8.840000e-73 285.0
14 TraesCS2D01G337700 chr3B 93.103 58 3 1 4039 4096 191570769 191570713 3.460000e-12 84.2
15 TraesCS2D01G337700 chr4B 89.865 1776 175 3 1990 3762 536851548 536849775 0.000000e+00 2278.0
16 TraesCS2D01G337700 chr4B 90.323 62 5 1 4039 4099 536849759 536849698 4.480000e-11 80.5
17 TraesCS2D01G337700 chr4B 90.323 62 5 1 4039 4100 597062317 597062257 4.480000e-11 80.5
18 TraesCS2D01G337700 chr2B 94.628 1303 41 7 4095 5394 509706917 509705641 0.000000e+00 1991.0
19 TraesCS2D01G337700 chr2B 94.316 1302 49 11 4095 5393 510061315 510060036 0.000000e+00 1971.0
20 TraesCS2D01G337700 chr2B 93.546 1193 64 6 712 1904 510350675 510349496 0.000000e+00 1764.0
21 TraesCS2D01G337700 chr2B 89.845 1359 129 5 2408 3762 348747921 348749274 0.000000e+00 1736.0
22 TraesCS2D01G337700 chr2B 93.558 978 35 8 939 1904 510062263 510061302 0.000000e+00 1432.0
23 TraesCS2D01G337700 chr2B 85.534 1030 84 30 904 1904 509997434 509996441 0.000000e+00 1016.0
24 TraesCS2D01G337700 chr2B 88.015 826 64 16 4095 4906 509574173 509573369 0.000000e+00 944.0
25 TraesCS2D01G337700 chr2B 86.433 855 56 25 4574 5394 510348951 510348123 0.000000e+00 881.0
26 TraesCS2D01G337700 chr2B 87.083 720 63 15 4195 4906 509996188 509995491 0.000000e+00 787.0
27 TraesCS2D01G337700 chr2B 84.908 815 73 14 1114 1904 509574948 509574160 0.000000e+00 778.0
28 TraesCS2D01G337700 chr2B 92.857 476 21 8 4095 4566 510349509 510349043 0.000000e+00 678.0
29 TraesCS2D01G337700 chr2B 89.165 563 25 14 1356 1904 509707444 509706904 0.000000e+00 669.0
30 TraesCS2D01G337700 chr2B 90.397 479 23 9 885 1363 509713326 509712871 4.620000e-170 608.0
31 TraesCS2D01G337700 chr2B 83.908 522 37 13 4901 5394 509995335 509994833 6.370000e-124 455.0
32 TraesCS2D01G337700 chr2B 82.987 529 33 21 4901 5394 509573226 509572720 4.990000e-115 425.0
33 TraesCS2D01G337700 chr2B 90.960 177 9 3 914 1084 509575122 509574947 1.170000e-56 231.0
34 TraesCS2D01G337700 chr2B 100.000 35 0 0 893 927 510062294 510062260 1.250000e-06 65.8
35 TraesCS2D01G337700 chr2A 91.785 1339 61 12 4095 5394 554954250 554955578 0.000000e+00 1818.0
36 TraesCS2D01G337700 chr2A 92.215 578 28 1 33 610 554943558 554944118 0.000000e+00 802.0
37 TraesCS2D01G337700 chr2A 94.835 484 23 1 615 1098 554952729 554953210 0.000000e+00 754.0
38 TraesCS2D01G337700 chr2A 94.231 104 6 0 1801 1904 554954160 554954263 5.590000e-35 159.0
39 TraesCS2D01G337700 chr7B 84.880 1746 254 10 1990 3729 571583942 571585683 0.000000e+00 1753.0
40 TraesCS2D01G337700 chr7B 80.000 220 31 7 317 523 600460874 600460655 3.370000e-32 150.0
41 TraesCS2D01G337700 chr7B 94.340 53 3 0 4044 4096 571585963 571586015 1.250000e-11 82.4
42 TraesCS2D01G337700 chr7B 88.889 45 5 0 1910 1954 571584582 571584626 7.550000e-04 56.5
43 TraesCS2D01G337700 chr7A 83.773 1781 276 11 1990 3762 38997230 38995455 0.000000e+00 1676.0
44 TraesCS2D01G337700 chr7A 77.686 484 81 16 70 534 201537222 201536747 2.480000e-68 270.0
45 TraesCS2D01G337700 chr7A 92.500 40 3 0 1915 1954 38996585 38996546 2.100000e-04 58.4
46 TraesCS2D01G337700 chr1B 82.601 1799 286 12 1990 3762 43179757 43177960 0.000000e+00 1563.0
47 TraesCS2D01G337700 chr1B 82.490 1799 287 13 1990 3762 43148424 43146628 0.000000e+00 1552.0
48 TraesCS2D01G337700 chr1B 82.471 1797 290 9 1990 3762 43122071 43120276 0.000000e+00 1550.0
49 TraesCS2D01G337700 chr1B 81.070 243 41 3 41 282 596946296 596946534 7.130000e-44 189.0
50 TraesCS2D01G337700 chr1B 76.707 249 51 6 121 365 17513998 17514243 1.220000e-26 132.0
51 TraesCS2D01G337700 chr5B 89.935 1232 62 20 4199 5390 100837780 100838989 0.000000e+00 1531.0
52 TraesCS2D01G337700 chr5D 85.816 1410 192 7 2340 3744 464328229 464326823 0.000000e+00 1489.0
53 TraesCS2D01G337700 chr7D 79.536 474 74 13 70 525 192152803 192152335 3.140000e-82 316.0
54 TraesCS2D01G337700 chr5A 80.267 375 65 9 164 533 565529299 565529669 1.910000e-69 274.0
55 TraesCS2D01G337700 chr5A 96.552 58 2 0 4039 4096 292738023 292737966 4.450000e-16 97.1
56 TraesCS2D01G337700 chr5A 95.556 45 2 0 1910 1954 292761636 292761592 7.490000e-09 73.1
57 TraesCS2D01G337700 chr6B 77.536 276 53 9 22 293 563476263 563476533 2.010000e-34 158.0
58 TraesCS2D01G337700 chr6B 96.552 58 2 0 4039 4096 51569653 51569710 4.450000e-16 97.1
59 TraesCS2D01G337700 chr6B 100.000 29 0 0 5144 5172 76148423 76148395 3.000000e-03 54.7
60 TraesCS2D01G337700 chr4A 94.545 55 3 0 4045 4099 729709544 729709490 9.630000e-13 86.1
61 TraesCS2D01G337700 chr3D 91.935 62 1 3 4054 4112 573742796 573742736 3.460000e-12 84.2
62 TraesCS2D01G337700 chrUn 91.667 60 3 1 4039 4096 77596895 77596954 1.250000e-11 82.4
63 TraesCS2D01G337700 chr6D 90.476 42 3 1 402 443 350245049 350245009 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G337700 chr2D 431424673 431430066 5393 True 3174.766667 6948 99.187000 1 5394 3 chr2D.!!$R4 5393
1 TraesCS2D01G337700 chr2D 27637593 27639207 1614 True 1402.000000 1402 82.375000 2150 3762 1 chr2D.!!$R1 1612
2 TraesCS2D01G337700 chr2D 431381419 431385854 4435 True 764.666667 1053 85.803333 893 5394 3 chr2D.!!$R3 4501
3 TraesCS2D01G337700 chr2D 431003479 431005887 2408 True 588.000000 1026 86.361000 893 5394 4 chr2D.!!$R2 4501
4 TraesCS2D01G337700 chr3B 633188573 633190346 1773 True 2305.000000 2305 90.152000 1990 3762 1 chr3B.!!$R3 1772
5 TraesCS2D01G337700 chr4B 536849698 536851548 1850 True 1179.250000 2278 90.094000 1990 4099 2 chr4B.!!$R2 2109
6 TraesCS2D01G337700 chr2B 348747921 348749274 1353 False 1736.000000 1736 89.845000 2408 3762 1 chr2B.!!$F1 1354
7 TraesCS2D01G337700 chr2B 509705641 509707444 1803 True 1330.000000 1991 91.896500 1356 5394 2 chr2B.!!$R3 4038
8 TraesCS2D01G337700 chr2B 510060036 510062294 2258 True 1156.266667 1971 95.958000 893 5393 3 chr2B.!!$R5 4500
9 TraesCS2D01G337700 chr2B 510348123 510350675 2552 True 1107.666667 1764 90.945333 712 5394 3 chr2B.!!$R6 4682
10 TraesCS2D01G337700 chr2B 509994833 509997434 2601 True 752.666667 1016 85.508333 904 5394 3 chr2B.!!$R4 4490
11 TraesCS2D01G337700 chr2B 509572720 509575122 2402 True 594.500000 944 86.717500 914 5394 4 chr2B.!!$R2 4480
12 TraesCS2D01G337700 chr2A 554952729 554955578 2849 False 910.333333 1818 93.617000 615 5394 3 chr2A.!!$F2 4779
13 TraesCS2D01G337700 chr2A 554943558 554944118 560 False 802.000000 802 92.215000 33 610 1 chr2A.!!$F1 577
14 TraesCS2D01G337700 chr7B 571583942 571586015 2073 False 630.633333 1753 89.369667 1910 4096 3 chr7B.!!$F1 2186
15 TraesCS2D01G337700 chr7A 38995455 38997230 1775 True 867.200000 1676 88.136500 1915 3762 2 chr7A.!!$R2 1847
16 TraesCS2D01G337700 chr1B 43177960 43179757 1797 True 1563.000000 1563 82.601000 1990 3762 1 chr1B.!!$R3 1772
17 TraesCS2D01G337700 chr1B 43146628 43148424 1796 True 1552.000000 1552 82.490000 1990 3762 1 chr1B.!!$R2 1772
18 TraesCS2D01G337700 chr1B 43120276 43122071 1795 True 1550.000000 1550 82.471000 1990 3762 1 chr1B.!!$R1 1772
19 TraesCS2D01G337700 chr5B 100837780 100838989 1209 False 1531.000000 1531 89.935000 4199 5390 1 chr5B.!!$F1 1191
20 TraesCS2D01G337700 chr5D 464326823 464328229 1406 True 1489.000000 1489 85.816000 2340 3744 1 chr5D.!!$R1 1404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.038599 TGCCAGTCATCAAGTGCCAT 59.961 50.000 0.00 0.00 0.00 4.40 F
1921 2577 0.106918 ACCTTTTGCCACGAGGTCAA 60.107 50.000 0.00 2.84 39.55 3.18 F
1965 2621 0.036105 GCAAAAGGCATTGGAAGGGG 60.036 55.000 5.39 0.00 43.97 4.79 F
2345 3001 0.101399 ATGACGAGACGACCTGCATC 59.899 55.000 0.00 0.00 0.00 3.91 F
3049 3774 0.328258 GGTGGCCATGGTTCAGTACT 59.672 55.000 9.72 0.00 0.00 2.73 F
3180 3905 0.531974 TATTCGCTGGTTCCATCCGC 60.532 55.000 7.02 0.79 0.00 5.54 F
3332 4057 1.227497 GCCTCTTCTGCGATCAGGG 60.227 63.158 0.00 0.00 40.69 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 2601 0.036105 CCCTTCCAATGCCTTTTGCC 60.036 55.000 0.00 0.00 40.16 4.52 R
3332 4057 0.179034 GTGCTCCATGGACTCCATCC 60.179 60.000 11.44 0.00 43.15 3.51 R
3586 4312 1.091771 ATGTCGTGGCATAGCTGTGC 61.092 55.000 25.75 25.75 44.31 4.57 R
4096 4823 3.060602 CGAGGTCTTTGTCTCAACCTTC 58.939 50.000 0.00 0.00 42.15 3.46 R
4116 4843 4.953814 CGTCTAAAAATAGGTAAAAGCGCG 59.046 41.667 0.00 0.00 0.00 6.86 R
4223 5119 7.883311 TCTTCCAATGAAAGGTAAAGTAGAAGG 59.117 37.037 0.00 0.00 0.00 3.46 R
5290 8511 5.536161 CCAATAGCATGCCACCTATAAAAGT 59.464 40.000 15.66 0.00 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.177950 CTGCCAGTCATCAAGTGCC 58.822 57.895 0.00 0.00 0.00 5.01
19 20 0.607217 CTGCCAGTCATCAAGTGCCA 60.607 55.000 0.00 0.00 0.00 4.92
20 21 0.038599 TGCCAGTCATCAAGTGCCAT 59.961 50.000 0.00 0.00 0.00 4.40
21 22 1.180029 GCCAGTCATCAAGTGCCATT 58.820 50.000 0.00 0.00 0.00 3.16
22 23 1.135199 GCCAGTCATCAAGTGCCATTG 60.135 52.381 0.00 0.00 0.00 2.82
23 24 1.135199 CCAGTCATCAAGTGCCATTGC 60.135 52.381 0.00 0.00 38.26 3.56
24 25 1.135199 CAGTCATCAAGTGCCATTGCC 60.135 52.381 0.00 0.00 36.33 4.52
25 26 1.180029 GTCATCAAGTGCCATTGCCT 58.820 50.000 0.00 0.00 36.33 4.75
26 27 1.135199 GTCATCAAGTGCCATTGCCTG 60.135 52.381 0.00 0.00 36.33 4.85
27 28 0.459585 CATCAAGTGCCATTGCCTGC 60.460 55.000 0.00 0.00 36.33 4.85
28 29 1.940883 ATCAAGTGCCATTGCCTGCG 61.941 55.000 0.00 0.00 36.33 5.18
29 30 3.376078 AAGTGCCATTGCCTGCGG 61.376 61.111 0.00 0.00 36.33 5.69
55 56 0.872021 CCGCGCCTAGTTTAGAGCAG 60.872 60.000 0.00 0.00 32.31 4.24
101 102 4.647611 TCTAAAAATGCGGAAAGGACAGA 58.352 39.130 0.00 0.00 0.00 3.41
102 103 5.067273 TCTAAAAATGCGGAAAGGACAGAA 58.933 37.500 0.00 0.00 0.00 3.02
103 104 3.923017 AAAATGCGGAAAGGACAGAAG 57.077 42.857 0.00 0.00 0.00 2.85
104 105 2.859165 AATGCGGAAAGGACAGAAGA 57.141 45.000 0.00 0.00 0.00 2.87
105 106 2.393271 ATGCGGAAAGGACAGAAGAG 57.607 50.000 0.00 0.00 0.00 2.85
106 107 1.048601 TGCGGAAAGGACAGAAGAGT 58.951 50.000 0.00 0.00 0.00 3.24
107 108 1.270305 TGCGGAAAGGACAGAAGAGTG 60.270 52.381 0.00 0.00 0.00 3.51
108 109 1.433534 CGGAAAGGACAGAAGAGTGC 58.566 55.000 0.00 0.00 0.00 4.40
109 110 1.814793 GGAAAGGACAGAAGAGTGCC 58.185 55.000 0.00 0.00 0.00 5.01
110 111 1.072331 GGAAAGGACAGAAGAGTGCCA 59.928 52.381 0.00 0.00 0.00 4.92
111 112 2.290577 GGAAAGGACAGAAGAGTGCCAT 60.291 50.000 0.00 0.00 0.00 4.40
112 113 3.416156 GAAAGGACAGAAGAGTGCCATT 58.584 45.455 0.00 0.00 0.00 3.16
113 114 3.515602 AAGGACAGAAGAGTGCCATTT 57.484 42.857 0.00 0.00 0.00 2.32
114 115 3.515602 AGGACAGAAGAGTGCCATTTT 57.484 42.857 0.00 0.00 0.00 1.82
115 116 4.640771 AGGACAGAAGAGTGCCATTTTA 57.359 40.909 0.00 0.00 0.00 1.52
116 117 5.184892 AGGACAGAAGAGTGCCATTTTAT 57.815 39.130 0.00 0.00 0.00 1.40
117 118 6.313519 AGGACAGAAGAGTGCCATTTTATA 57.686 37.500 0.00 0.00 0.00 0.98
202 203 6.705825 GGATGGATGTAAATTTTGGTATTGGC 59.294 38.462 0.00 0.00 0.00 4.52
203 204 6.611613 TGGATGTAAATTTTGGTATTGGCA 57.388 33.333 0.00 0.00 0.00 4.92
221 222 6.624352 TTGGCAAGAAGAGTATATTGATGC 57.376 37.500 0.00 0.00 0.00 3.91
224 225 6.429078 TGGCAAGAAGAGTATATTGATGCATC 59.571 38.462 20.14 20.14 33.14 3.91
225 226 6.401903 GGCAAGAAGAGTATATTGATGCATCG 60.402 42.308 21.34 2.78 33.14 3.84
231 232 1.159285 ATATTGATGCATCGGTGGCG 58.841 50.000 21.34 0.00 0.00 5.69
239 240 1.268265 GCATCGGTGGCGAAAAATTC 58.732 50.000 0.00 0.00 0.00 2.17
276 277 5.049398 CACTACTTGCTAGAGACGAAACT 57.951 43.478 1.04 0.00 0.00 2.66
277 278 6.179504 CACTACTTGCTAGAGACGAAACTA 57.820 41.667 1.04 0.00 0.00 2.24
278 279 6.252281 CACTACTTGCTAGAGACGAAACTAG 58.748 44.000 1.04 0.00 39.05 2.57
279 280 6.092396 CACTACTTGCTAGAGACGAAACTAGA 59.908 42.308 1.04 2.77 38.53 2.43
280 281 5.554822 ACTTGCTAGAGACGAAACTAGAG 57.445 43.478 1.04 8.84 38.53 2.43
281 282 5.247084 ACTTGCTAGAGACGAAACTAGAGA 58.753 41.667 1.04 5.23 38.53 3.10
282 283 5.353123 ACTTGCTAGAGACGAAACTAGAGAG 59.647 44.000 1.04 12.81 38.53 3.20
283 284 4.193090 TGCTAGAGACGAAACTAGAGAGG 58.807 47.826 14.64 0.00 38.53 3.69
284 285 4.081031 TGCTAGAGACGAAACTAGAGAGGA 60.081 45.833 14.64 0.00 38.53 3.71
285 286 5.061179 GCTAGAGACGAAACTAGAGAGGAT 58.939 45.833 14.64 0.00 38.53 3.24
286 287 5.049680 GCTAGAGACGAAACTAGAGAGGATG 60.050 48.000 14.64 0.00 38.53 3.51
287 288 3.630312 AGAGACGAAACTAGAGAGGATGC 59.370 47.826 0.00 0.00 0.00 3.91
288 289 3.357203 AGACGAAACTAGAGAGGATGCA 58.643 45.455 0.00 0.00 0.00 3.96
289 290 3.764434 AGACGAAACTAGAGAGGATGCAA 59.236 43.478 0.00 0.00 0.00 4.08
290 291 4.404073 AGACGAAACTAGAGAGGATGCAAT 59.596 41.667 0.00 0.00 0.00 3.56
291 292 4.437239 ACGAAACTAGAGAGGATGCAATG 58.563 43.478 0.00 0.00 0.00 2.82
292 293 4.081420 ACGAAACTAGAGAGGATGCAATGT 60.081 41.667 0.00 0.00 0.00 2.71
293 294 4.505922 CGAAACTAGAGAGGATGCAATGTC 59.494 45.833 0.00 0.00 0.00 3.06
294 295 4.414337 AACTAGAGAGGATGCAATGTCC 57.586 45.455 0.00 0.00 35.94 4.02
295 296 3.378512 ACTAGAGAGGATGCAATGTCCA 58.621 45.455 7.56 0.00 38.25 4.02
296 297 3.776969 ACTAGAGAGGATGCAATGTCCAA 59.223 43.478 7.56 0.00 38.25 3.53
297 298 3.278668 AGAGAGGATGCAATGTCCAAG 57.721 47.619 7.56 0.00 38.25 3.61
298 299 2.575279 AGAGAGGATGCAATGTCCAAGT 59.425 45.455 7.56 0.00 38.25 3.16
299 300 3.009916 AGAGAGGATGCAATGTCCAAGTT 59.990 43.478 7.56 0.00 38.25 2.66
300 301 3.760684 GAGAGGATGCAATGTCCAAGTTT 59.239 43.478 7.56 0.00 38.25 2.66
301 302 4.922206 AGAGGATGCAATGTCCAAGTTTA 58.078 39.130 7.56 0.00 38.25 2.01
302 303 5.324409 AGAGGATGCAATGTCCAAGTTTAA 58.676 37.500 7.56 0.00 38.25 1.52
303 304 5.416952 AGAGGATGCAATGTCCAAGTTTAAG 59.583 40.000 7.56 0.00 38.25 1.85
304 305 4.463891 AGGATGCAATGTCCAAGTTTAAGG 59.536 41.667 7.56 0.00 38.25 2.69
305 306 4.462483 GGATGCAATGTCCAAGTTTAAGGA 59.538 41.667 0.00 0.00 35.76 3.36
306 307 5.393461 GGATGCAATGTCCAAGTTTAAGGAG 60.393 44.000 0.00 0.00 35.76 3.69
307 308 4.724399 TGCAATGTCCAAGTTTAAGGAGA 58.276 39.130 0.00 0.00 33.85 3.71
308 309 4.518970 TGCAATGTCCAAGTTTAAGGAGAC 59.481 41.667 0.00 0.00 33.85 3.36
309 310 4.378459 GCAATGTCCAAGTTTAAGGAGACG 60.378 45.833 0.00 0.00 33.85 4.18
310 311 3.396260 TGTCCAAGTTTAAGGAGACGG 57.604 47.619 0.00 0.00 33.85 4.79
311 312 2.967201 TGTCCAAGTTTAAGGAGACGGA 59.033 45.455 0.00 0.00 33.85 4.69
312 313 3.006537 TGTCCAAGTTTAAGGAGACGGAG 59.993 47.826 0.00 0.00 33.85 4.63
313 314 3.257624 GTCCAAGTTTAAGGAGACGGAGA 59.742 47.826 0.00 0.00 33.85 3.71
314 315 3.899360 TCCAAGTTTAAGGAGACGGAGAA 59.101 43.478 0.00 0.00 0.00 2.87
315 316 3.995048 CCAAGTTTAAGGAGACGGAGAAC 59.005 47.826 0.00 0.00 0.00 3.01
316 317 4.502604 CCAAGTTTAAGGAGACGGAGAACA 60.503 45.833 0.00 0.00 0.00 3.18
317 318 4.950205 AGTTTAAGGAGACGGAGAACAA 57.050 40.909 0.00 0.00 0.00 2.83
318 319 4.884247 AGTTTAAGGAGACGGAGAACAAG 58.116 43.478 0.00 0.00 0.00 3.16
319 320 4.587684 AGTTTAAGGAGACGGAGAACAAGA 59.412 41.667 0.00 0.00 0.00 3.02
320 321 5.070047 AGTTTAAGGAGACGGAGAACAAGAA 59.930 40.000 0.00 0.00 0.00 2.52
321 322 3.669251 AAGGAGACGGAGAACAAGAAG 57.331 47.619 0.00 0.00 0.00 2.85
322 323 2.877866 AGGAGACGGAGAACAAGAAGA 58.122 47.619 0.00 0.00 0.00 2.87
323 324 3.231818 AGGAGACGGAGAACAAGAAGAA 58.768 45.455 0.00 0.00 0.00 2.52
324 325 3.257127 AGGAGACGGAGAACAAGAAGAAG 59.743 47.826 0.00 0.00 0.00 2.85
325 326 3.006003 GGAGACGGAGAACAAGAAGAAGT 59.994 47.826 0.00 0.00 0.00 3.01
326 327 3.983741 AGACGGAGAACAAGAAGAAGTG 58.016 45.455 0.00 0.00 0.00 3.16
327 328 3.385111 AGACGGAGAACAAGAAGAAGTGT 59.615 43.478 0.00 0.00 0.00 3.55
328 329 4.583489 AGACGGAGAACAAGAAGAAGTGTA 59.417 41.667 0.00 0.00 0.00 2.90
329 330 4.618965 ACGGAGAACAAGAAGAAGTGTAC 58.381 43.478 0.00 0.00 0.00 2.90
330 331 4.098960 ACGGAGAACAAGAAGAAGTGTACA 59.901 41.667 0.00 0.00 0.00 2.90
331 332 5.047847 CGGAGAACAAGAAGAAGTGTACAA 58.952 41.667 0.00 0.00 0.00 2.41
332 333 5.696724 CGGAGAACAAGAAGAAGTGTACAAT 59.303 40.000 0.00 0.00 0.00 2.71
333 334 6.128795 CGGAGAACAAGAAGAAGTGTACAATC 60.129 42.308 0.00 0.00 0.00 2.67
334 335 6.147985 GGAGAACAAGAAGAAGTGTACAATCC 59.852 42.308 0.00 0.00 0.00 3.01
335 336 5.998363 AGAACAAGAAGAAGTGTACAATCCC 59.002 40.000 0.00 0.00 0.00 3.85
336 337 4.315803 ACAAGAAGAAGTGTACAATCCCG 58.684 43.478 0.00 0.00 0.00 5.14
337 338 4.039973 ACAAGAAGAAGTGTACAATCCCGA 59.960 41.667 0.00 0.00 0.00 5.14
338 339 4.457834 AGAAGAAGTGTACAATCCCGAG 57.542 45.455 0.00 0.00 0.00 4.63
339 340 4.087182 AGAAGAAGTGTACAATCCCGAGA 58.913 43.478 0.00 0.00 0.00 4.04
340 341 4.527038 AGAAGAAGTGTACAATCCCGAGAA 59.473 41.667 0.00 0.00 0.00 2.87
341 342 4.457834 AGAAGTGTACAATCCCGAGAAG 57.542 45.455 0.00 0.00 0.00 2.85
342 343 2.674796 AGTGTACAATCCCGAGAAGC 57.325 50.000 0.00 0.00 0.00 3.86
343 344 1.207329 AGTGTACAATCCCGAGAAGCC 59.793 52.381 0.00 0.00 0.00 4.35
344 345 1.066430 GTGTACAATCCCGAGAAGCCA 60.066 52.381 0.00 0.00 0.00 4.75
345 346 1.626321 TGTACAATCCCGAGAAGCCAA 59.374 47.619 0.00 0.00 0.00 4.52
346 347 2.238646 TGTACAATCCCGAGAAGCCAAT 59.761 45.455 0.00 0.00 0.00 3.16
347 348 3.452990 TGTACAATCCCGAGAAGCCAATA 59.547 43.478 0.00 0.00 0.00 1.90
348 349 3.199880 ACAATCCCGAGAAGCCAATAG 57.800 47.619 0.00 0.00 0.00 1.73
349 350 2.771943 ACAATCCCGAGAAGCCAATAGA 59.228 45.455 0.00 0.00 0.00 1.98
350 351 3.181461 ACAATCCCGAGAAGCCAATAGAG 60.181 47.826 0.00 0.00 0.00 2.43
351 352 2.454336 TCCCGAGAAGCCAATAGAGA 57.546 50.000 0.00 0.00 0.00 3.10
352 353 2.747177 TCCCGAGAAGCCAATAGAGAA 58.253 47.619 0.00 0.00 0.00 2.87
353 354 3.104512 TCCCGAGAAGCCAATAGAGAAA 58.895 45.455 0.00 0.00 0.00 2.52
354 355 3.517901 TCCCGAGAAGCCAATAGAGAAAA 59.482 43.478 0.00 0.00 0.00 2.29
355 356 3.873952 CCCGAGAAGCCAATAGAGAAAAG 59.126 47.826 0.00 0.00 0.00 2.27
356 357 3.311048 CCGAGAAGCCAATAGAGAAAAGC 59.689 47.826 0.00 0.00 0.00 3.51
357 358 3.935203 CGAGAAGCCAATAGAGAAAAGCA 59.065 43.478 0.00 0.00 0.00 3.91
358 359 4.393062 CGAGAAGCCAATAGAGAAAAGCAA 59.607 41.667 0.00 0.00 0.00 3.91
359 360 5.635417 AGAAGCCAATAGAGAAAAGCAAC 57.365 39.130 0.00 0.00 0.00 4.17
360 361 5.072741 AGAAGCCAATAGAGAAAAGCAACA 58.927 37.500 0.00 0.00 0.00 3.33
361 362 5.536161 AGAAGCCAATAGAGAAAAGCAACAA 59.464 36.000 0.00 0.00 0.00 2.83
362 363 5.990120 AGCCAATAGAGAAAAGCAACAAT 57.010 34.783 0.00 0.00 0.00 2.71
363 364 5.717119 AGCCAATAGAGAAAAGCAACAATG 58.283 37.500 0.00 0.00 0.00 2.82
364 365 5.244626 AGCCAATAGAGAAAAGCAACAATGT 59.755 36.000 0.00 0.00 0.00 2.71
365 366 5.574443 GCCAATAGAGAAAAGCAACAATGTC 59.426 40.000 0.00 0.00 0.00 3.06
366 367 6.680810 CCAATAGAGAAAAGCAACAATGTCA 58.319 36.000 0.00 0.00 0.00 3.58
367 368 6.805271 CCAATAGAGAAAAGCAACAATGTCAG 59.195 38.462 0.00 0.00 0.00 3.51
368 369 4.234530 AGAGAAAAGCAACAATGTCAGC 57.765 40.909 3.05 3.05 0.00 4.26
369 370 3.633525 AGAGAAAAGCAACAATGTCAGCA 59.366 39.130 12.17 0.00 0.00 4.41
370 371 3.973657 AGAAAAGCAACAATGTCAGCAG 58.026 40.909 12.17 0.00 0.00 4.24
371 372 3.382546 AGAAAAGCAACAATGTCAGCAGT 59.617 39.130 12.17 0.00 0.00 4.40
372 373 2.787601 AAGCAACAATGTCAGCAGTG 57.212 45.000 12.17 0.00 45.18 3.66
373 374 1.971481 AGCAACAATGTCAGCAGTGA 58.029 45.000 12.17 0.00 42.66 3.41
374 375 2.300433 AGCAACAATGTCAGCAGTGAA 58.700 42.857 12.17 0.00 42.66 3.18
375 376 2.292569 AGCAACAATGTCAGCAGTGAAG 59.707 45.455 12.17 0.00 42.66 3.02
376 377 2.291465 GCAACAATGTCAGCAGTGAAGA 59.709 45.455 6.00 0.00 42.66 2.87
377 378 3.608707 GCAACAATGTCAGCAGTGAAGAG 60.609 47.826 6.00 0.00 42.66 2.85
378 379 3.758755 ACAATGTCAGCAGTGAAGAGA 57.241 42.857 0.00 0.00 42.66 3.10
379 380 4.283363 ACAATGTCAGCAGTGAAGAGAT 57.717 40.909 0.00 0.00 42.66 2.75
380 381 5.411831 ACAATGTCAGCAGTGAAGAGATA 57.588 39.130 0.00 0.00 42.66 1.98
381 382 5.798132 ACAATGTCAGCAGTGAAGAGATAA 58.202 37.500 0.00 0.00 42.66 1.75
382 383 6.233434 ACAATGTCAGCAGTGAAGAGATAAA 58.767 36.000 0.00 0.00 42.66 1.40
383 384 6.370994 ACAATGTCAGCAGTGAAGAGATAAAG 59.629 38.462 0.00 0.00 42.66 1.85
384 385 5.728637 TGTCAGCAGTGAAGAGATAAAGA 57.271 39.130 0.00 0.00 33.27 2.52
385 386 6.101650 TGTCAGCAGTGAAGAGATAAAGAA 57.898 37.500 0.00 0.00 33.27 2.52
386 387 6.524734 TGTCAGCAGTGAAGAGATAAAGAAA 58.475 36.000 0.00 0.00 33.27 2.52
387 388 6.648310 TGTCAGCAGTGAAGAGATAAAGAAAG 59.352 38.462 0.00 0.00 33.27 2.62
388 389 5.641209 TCAGCAGTGAAGAGATAAAGAAAGC 59.359 40.000 0.00 0.00 0.00 3.51
389 390 4.629200 AGCAGTGAAGAGATAAAGAAAGCG 59.371 41.667 0.00 0.00 0.00 4.68
390 391 4.390297 GCAGTGAAGAGATAAAGAAAGCGT 59.610 41.667 0.00 0.00 0.00 5.07
391 392 5.106908 GCAGTGAAGAGATAAAGAAAGCGTT 60.107 40.000 0.00 0.00 0.00 4.84
392 393 6.302615 CAGTGAAGAGATAAAGAAAGCGTTG 58.697 40.000 0.00 0.00 0.00 4.10
393 394 6.146184 CAGTGAAGAGATAAAGAAAGCGTTGA 59.854 38.462 0.00 0.00 0.00 3.18
394 395 6.876257 AGTGAAGAGATAAAGAAAGCGTTGAT 59.124 34.615 0.00 0.00 0.00 2.57
395 396 6.958193 GTGAAGAGATAAAGAAAGCGTTGATG 59.042 38.462 0.00 0.00 0.00 3.07
396 397 6.092670 TGAAGAGATAAAGAAAGCGTTGATGG 59.907 38.462 0.00 0.00 0.00 3.51
397 398 5.734720 AGAGATAAAGAAAGCGTTGATGGA 58.265 37.500 0.00 0.00 0.00 3.41
398 399 5.582665 AGAGATAAAGAAAGCGTTGATGGAC 59.417 40.000 0.00 0.00 0.00 4.02
399 400 5.491982 AGATAAAGAAAGCGTTGATGGACT 58.508 37.500 0.00 0.00 0.00 3.85
400 401 6.640518 AGATAAAGAAAGCGTTGATGGACTA 58.359 36.000 0.00 0.00 0.00 2.59
401 402 6.758886 AGATAAAGAAAGCGTTGATGGACTAG 59.241 38.462 0.00 0.00 0.00 2.57
402 403 3.963428 AGAAAGCGTTGATGGACTAGT 57.037 42.857 0.00 0.00 0.00 2.57
403 404 5.401531 AAGAAAGCGTTGATGGACTAGTA 57.598 39.130 0.00 0.00 0.00 1.82
404 405 5.000012 AGAAAGCGTTGATGGACTAGTAG 58.000 43.478 0.00 0.00 0.00 2.57
405 406 3.802948 AAGCGTTGATGGACTAGTAGG 57.197 47.619 0.00 0.00 0.00 3.18
406 407 3.014304 AGCGTTGATGGACTAGTAGGA 57.986 47.619 0.00 0.00 0.00 2.94
407 408 2.952978 AGCGTTGATGGACTAGTAGGAG 59.047 50.000 0.00 0.00 0.00 3.69
408 409 2.544069 GCGTTGATGGACTAGTAGGAGC 60.544 54.545 0.00 0.00 0.00 4.70
409 410 2.952978 CGTTGATGGACTAGTAGGAGCT 59.047 50.000 0.00 0.00 0.00 4.09
410 411 3.243234 CGTTGATGGACTAGTAGGAGCTG 60.243 52.174 0.00 0.00 0.00 4.24
411 412 3.671740 TGATGGACTAGTAGGAGCTGT 57.328 47.619 0.00 0.00 0.00 4.40
412 413 3.982516 TGATGGACTAGTAGGAGCTGTT 58.017 45.455 0.00 0.00 0.00 3.16
413 414 5.125367 TGATGGACTAGTAGGAGCTGTTA 57.875 43.478 0.00 0.00 0.00 2.41
414 415 5.133941 TGATGGACTAGTAGGAGCTGTTAG 58.866 45.833 0.00 0.00 0.00 2.34
415 416 4.857130 TGGACTAGTAGGAGCTGTTAGA 57.143 45.455 0.00 0.00 0.00 2.10
416 417 4.783055 TGGACTAGTAGGAGCTGTTAGAG 58.217 47.826 0.00 0.00 0.00 2.43
417 418 4.473922 TGGACTAGTAGGAGCTGTTAGAGA 59.526 45.833 0.00 0.00 0.00 3.10
418 419 5.045066 TGGACTAGTAGGAGCTGTTAGAGAA 60.045 44.000 0.00 0.00 0.00 2.87
419 420 5.529800 GGACTAGTAGGAGCTGTTAGAGAAG 59.470 48.000 0.00 0.00 0.00 2.85
420 421 6.069705 ACTAGTAGGAGCTGTTAGAGAAGT 57.930 41.667 1.45 0.00 0.00 3.01
421 422 6.486941 ACTAGTAGGAGCTGTTAGAGAAGTT 58.513 40.000 1.45 0.00 0.00 2.66
422 423 5.652994 AGTAGGAGCTGTTAGAGAAGTTG 57.347 43.478 0.00 0.00 0.00 3.16
423 424 5.081032 AGTAGGAGCTGTTAGAGAAGTTGT 58.919 41.667 0.00 0.00 0.00 3.32
424 425 4.264460 AGGAGCTGTTAGAGAAGTTGTG 57.736 45.455 0.00 0.00 0.00 3.33
425 426 3.643792 AGGAGCTGTTAGAGAAGTTGTGT 59.356 43.478 0.00 0.00 0.00 3.72
426 427 4.101741 AGGAGCTGTTAGAGAAGTTGTGTT 59.898 41.667 0.00 0.00 0.00 3.32
427 428 4.816925 GGAGCTGTTAGAGAAGTTGTGTTT 59.183 41.667 0.00 0.00 0.00 2.83
428 429 5.050023 GGAGCTGTTAGAGAAGTTGTGTTTC 60.050 44.000 0.00 0.00 0.00 2.78
429 430 5.675538 AGCTGTTAGAGAAGTTGTGTTTCT 58.324 37.500 0.00 0.00 37.59 2.52
430 431 6.817184 AGCTGTTAGAGAAGTTGTGTTTCTA 58.183 36.000 0.00 0.00 35.14 2.10
431 432 7.445945 AGCTGTTAGAGAAGTTGTGTTTCTAT 58.554 34.615 0.00 0.00 35.14 1.98
432 433 7.934120 AGCTGTTAGAGAAGTTGTGTTTCTATT 59.066 33.333 0.00 0.00 35.14 1.73
433 434 8.012241 GCTGTTAGAGAAGTTGTGTTTCTATTG 58.988 37.037 0.00 0.00 35.14 1.90
434 435 9.261180 CTGTTAGAGAAGTTGTGTTTCTATTGA 57.739 33.333 0.00 0.00 35.14 2.57
435 436 9.607988 TGTTAGAGAAGTTGTGTTTCTATTGAA 57.392 29.630 0.00 0.00 35.14 2.69
437 438 9.832445 TTAGAGAAGTTGTGTTTCTATTGAAGT 57.168 29.630 0.00 0.00 35.14 3.01
438 439 8.147642 AGAGAAGTTGTGTTTCTATTGAAGTG 57.852 34.615 0.00 0.00 35.14 3.16
439 440 7.770897 AGAGAAGTTGTGTTTCTATTGAAGTGT 59.229 33.333 0.00 0.00 35.14 3.55
440 441 7.697691 AGAAGTTGTGTTTCTATTGAAGTGTG 58.302 34.615 0.00 0.00 33.30 3.82
441 442 7.336931 AGAAGTTGTGTTTCTATTGAAGTGTGT 59.663 33.333 0.00 0.00 33.30 3.72
442 443 8.500753 AAGTTGTGTTTCTATTGAAGTGTGTA 57.499 30.769 0.00 0.00 33.28 2.90
443 444 8.142994 AGTTGTGTTTCTATTGAAGTGTGTAG 57.857 34.615 0.00 0.00 33.28 2.74
444 445 7.769044 AGTTGTGTTTCTATTGAAGTGTGTAGT 59.231 33.333 0.00 0.00 33.28 2.73
445 446 8.395633 GTTGTGTTTCTATTGAAGTGTGTAGTT 58.604 33.333 0.00 0.00 33.28 2.24
446 447 8.138365 TGTGTTTCTATTGAAGTGTGTAGTTC 57.862 34.615 0.00 0.00 36.88 3.01
447 448 7.985184 TGTGTTTCTATTGAAGTGTGTAGTTCT 59.015 33.333 0.00 0.00 37.20 3.01
448 449 8.827677 GTGTTTCTATTGAAGTGTGTAGTTCTT 58.172 33.333 0.00 0.00 37.20 2.52
449 450 9.391006 TGTTTCTATTGAAGTGTGTAGTTCTTT 57.609 29.630 0.00 0.00 37.20 2.52
453 454 9.391006 TCTATTGAAGTGTGTAGTTCTTTTTGT 57.609 29.630 0.00 0.00 37.20 2.83
454 455 9.438291 CTATTGAAGTGTGTAGTTCTTTTTGTG 57.562 33.333 0.00 0.00 37.20 3.33
455 456 7.441890 TTGAAGTGTGTAGTTCTTTTTGTGA 57.558 32.000 0.00 0.00 37.20 3.58
456 457 7.624360 TGAAGTGTGTAGTTCTTTTTGTGAT 57.376 32.000 0.00 0.00 37.20 3.06
457 458 7.693952 TGAAGTGTGTAGTTCTTTTTGTGATC 58.306 34.615 0.00 0.00 37.20 2.92
458 459 6.287107 AGTGTGTAGTTCTTTTTGTGATCG 57.713 37.500 0.00 0.00 0.00 3.69
459 460 5.236478 AGTGTGTAGTTCTTTTTGTGATCGG 59.764 40.000 0.00 0.00 0.00 4.18
460 461 5.007332 GTGTGTAGTTCTTTTTGTGATCGGT 59.993 40.000 0.00 0.00 0.00 4.69
461 462 5.587043 TGTGTAGTTCTTTTTGTGATCGGTT 59.413 36.000 0.00 0.00 0.00 4.44
462 463 6.134061 GTGTAGTTCTTTTTGTGATCGGTTC 58.866 40.000 0.00 0.00 0.00 3.62
463 464 6.018180 GTGTAGTTCTTTTTGTGATCGGTTCT 60.018 38.462 0.00 0.00 0.00 3.01
464 465 5.674933 AGTTCTTTTTGTGATCGGTTCTC 57.325 39.130 0.00 0.00 0.00 2.87
465 466 5.368989 AGTTCTTTTTGTGATCGGTTCTCT 58.631 37.500 0.00 0.00 0.00 3.10
466 467 5.823045 AGTTCTTTTTGTGATCGGTTCTCTT 59.177 36.000 0.00 0.00 0.00 2.85
467 468 6.990349 AGTTCTTTTTGTGATCGGTTCTCTTA 59.010 34.615 0.00 0.00 0.00 2.10
468 469 7.661847 AGTTCTTTTTGTGATCGGTTCTCTTAT 59.338 33.333 0.00 0.00 0.00 1.73
469 470 7.596749 TCTTTTTGTGATCGGTTCTCTTATC 57.403 36.000 0.00 0.00 0.00 1.75
470 471 6.310467 TCTTTTTGTGATCGGTTCTCTTATCG 59.690 38.462 0.00 0.00 0.00 2.92
471 472 4.976224 TTGTGATCGGTTCTCTTATCGA 57.024 40.909 0.00 0.00 36.07 3.59
472 473 4.976224 TGTGATCGGTTCTCTTATCGAA 57.024 40.909 0.00 0.00 35.25 3.71
473 474 4.921547 TGTGATCGGTTCTCTTATCGAAG 58.078 43.478 0.00 0.00 35.25 3.79
474 475 4.638865 TGTGATCGGTTCTCTTATCGAAGA 59.361 41.667 0.00 0.00 45.75 2.87
475 476 5.124936 TGTGATCGGTTCTCTTATCGAAGAA 59.875 40.000 0.00 0.00 43.58 2.52
476 477 6.183360 TGTGATCGGTTCTCTTATCGAAGAAT 60.183 38.462 0.88 0.00 43.58 2.40
477 478 6.697892 GTGATCGGTTCTCTTATCGAAGAATT 59.302 38.462 0.88 0.00 43.58 2.17
478 479 6.697455 TGATCGGTTCTCTTATCGAAGAATTG 59.303 38.462 0.88 0.00 43.58 2.32
479 480 5.348986 TCGGTTCTCTTATCGAAGAATTGG 58.651 41.667 0.88 0.00 43.58 3.16
480 481 5.105473 TCGGTTCTCTTATCGAAGAATTGGT 60.105 40.000 0.88 0.00 43.58 3.67
481 482 5.005779 CGGTTCTCTTATCGAAGAATTGGTG 59.994 44.000 0.88 0.00 43.58 4.17
482 483 6.106673 GGTTCTCTTATCGAAGAATTGGTGA 58.893 40.000 0.88 0.00 43.58 4.02
483 484 6.594159 GGTTCTCTTATCGAAGAATTGGTGAA 59.406 38.462 0.88 0.00 43.58 3.18
484 485 7.201565 GGTTCTCTTATCGAAGAATTGGTGAAG 60.202 40.741 0.88 0.00 43.58 3.02
485 486 6.936279 TCTCTTATCGAAGAATTGGTGAAGT 58.064 36.000 0.00 0.00 43.58 3.01
486 487 8.063200 TCTCTTATCGAAGAATTGGTGAAGTA 57.937 34.615 0.00 0.00 43.58 2.24
487 488 8.696374 TCTCTTATCGAAGAATTGGTGAAGTAT 58.304 33.333 0.00 0.00 43.58 2.12
488 489 8.648557 TCTTATCGAAGAATTGGTGAAGTATG 57.351 34.615 0.00 0.00 43.58 2.39
489 490 8.258007 TCTTATCGAAGAATTGGTGAAGTATGT 58.742 33.333 0.00 0.00 43.58 2.29
490 491 9.529325 CTTATCGAAGAATTGGTGAAGTATGTA 57.471 33.333 0.00 0.00 43.58 2.29
492 493 8.594881 ATCGAAGAATTGGTGAAGTATGTATC 57.405 34.615 0.00 0.00 43.58 2.24
493 494 6.984474 TCGAAGAATTGGTGAAGTATGTATCC 59.016 38.462 0.00 0.00 0.00 2.59
494 495 6.761242 CGAAGAATTGGTGAAGTATGTATCCA 59.239 38.462 0.00 0.00 0.00 3.41
495 496 7.279981 CGAAGAATTGGTGAAGTATGTATCCAA 59.720 37.037 0.00 0.00 38.90 3.53
496 497 9.125026 GAAGAATTGGTGAAGTATGTATCCAAT 57.875 33.333 0.00 0.00 44.24 3.16
500 501 9.866655 AATTGGTGAAGTATGTATCCAATATGT 57.133 29.630 7.50 0.00 42.41 2.29
501 502 9.866655 ATTGGTGAAGTATGTATCCAATATGTT 57.133 29.630 5.59 0.00 41.76 2.71
540 541 6.481954 AAAGTAGTGAAGTTTATGCCTTCG 57.518 37.500 0.00 0.00 40.96 3.79
541 542 4.504858 AGTAGTGAAGTTTATGCCTTCGG 58.495 43.478 0.00 0.00 40.96 4.30
542 543 3.418684 AGTGAAGTTTATGCCTTCGGT 57.581 42.857 0.00 0.00 40.96 4.69
543 544 3.335579 AGTGAAGTTTATGCCTTCGGTC 58.664 45.455 0.00 0.00 40.96 4.79
544 545 3.071479 GTGAAGTTTATGCCTTCGGTCA 58.929 45.455 0.00 0.00 40.96 4.02
545 546 3.500680 GTGAAGTTTATGCCTTCGGTCAA 59.499 43.478 0.00 0.00 40.96 3.18
546 547 4.023536 GTGAAGTTTATGCCTTCGGTCAAA 60.024 41.667 0.00 0.00 40.96 2.69
547 548 4.580995 TGAAGTTTATGCCTTCGGTCAAAA 59.419 37.500 0.00 0.00 40.96 2.44
548 549 5.067936 TGAAGTTTATGCCTTCGGTCAAAAA 59.932 36.000 0.00 0.00 40.96 1.94
549 550 5.722021 AGTTTATGCCTTCGGTCAAAAAT 57.278 34.783 0.00 0.00 0.00 1.82
550 551 6.096673 AGTTTATGCCTTCGGTCAAAAATT 57.903 33.333 0.00 0.00 0.00 1.82
551 552 5.925969 AGTTTATGCCTTCGGTCAAAAATTG 59.074 36.000 0.00 0.00 0.00 2.32
552 553 5.713792 TTATGCCTTCGGTCAAAAATTGA 57.286 34.783 0.00 0.00 37.33 2.57
553 554 4.599047 ATGCCTTCGGTCAAAAATTGAA 57.401 36.364 0.00 0.00 42.15 2.69
554 555 3.712187 TGCCTTCGGTCAAAAATTGAAC 58.288 40.909 0.00 0.00 43.92 3.18
555 556 3.383185 TGCCTTCGGTCAAAAATTGAACT 59.617 39.130 6.57 0.00 45.17 3.01
556 557 4.580995 TGCCTTCGGTCAAAAATTGAACTA 59.419 37.500 6.57 0.00 45.17 2.24
557 558 5.067936 TGCCTTCGGTCAAAAATTGAACTAA 59.932 36.000 6.57 1.52 45.17 2.24
558 559 6.156519 GCCTTCGGTCAAAAATTGAACTAAT 58.843 36.000 6.57 0.00 45.17 1.73
559 560 6.645003 GCCTTCGGTCAAAAATTGAACTAATT 59.355 34.615 6.57 0.00 45.17 1.40
561 562 8.487176 CCTTCGGTCAAAAATTGAACTAATTTG 58.513 33.333 6.57 0.00 45.74 2.32
562 563 7.938563 TCGGTCAAAAATTGAACTAATTTGG 57.061 32.000 6.57 0.00 45.74 3.28
563 564 6.422400 TCGGTCAAAAATTGAACTAATTTGGC 59.578 34.615 6.57 0.00 45.74 4.52
564 565 6.201806 CGGTCAAAAATTGAACTAATTTGGCA 59.798 34.615 6.57 0.00 45.74 4.92
565 566 7.254590 CGGTCAAAAATTGAACTAATTTGGCAA 60.255 33.333 0.00 0.00 45.74 4.52
566 567 8.401709 GGTCAAAAATTGAACTAATTTGGCAAA 58.598 29.630 16.01 16.01 45.74 3.68
567 568 9.780413 GTCAAAAATTGAACTAATTTGGCAAAA 57.220 25.926 17.70 0.00 45.74 2.44
582 583 8.647143 ATTTGGCAAAATGATATTTTACTCCG 57.353 30.769 17.70 0.00 34.63 4.63
583 584 6.767524 TGGCAAAATGATATTTTACTCCGT 57.232 33.333 0.00 0.00 0.00 4.69
584 585 7.164230 TGGCAAAATGATATTTTACTCCGTT 57.836 32.000 0.00 0.00 0.00 4.44
585 586 8.282455 TGGCAAAATGATATTTTACTCCGTTA 57.718 30.769 0.00 0.00 0.00 3.18
586 587 8.740906 TGGCAAAATGATATTTTACTCCGTTAA 58.259 29.630 0.00 0.00 0.00 2.01
587 588 9.575783 GGCAAAATGATATTTTACTCCGTTAAA 57.424 29.630 0.00 0.00 0.00 1.52
605 606 9.116067 TCCGTTAAACTTAAGGGATCAATTATG 57.884 33.333 16.10 0.00 46.74 1.90
606 607 9.116067 CCGTTAAACTTAAGGGATCAATTATGA 57.884 33.333 13.35 0.00 46.40 2.15
610 611 8.801882 AAACTTAAGGGATCAATTATGAACGA 57.198 30.769 7.53 0.00 39.49 3.85
611 612 8.980481 AACTTAAGGGATCAATTATGAACGAT 57.020 30.769 7.53 0.00 39.49 3.73
613 614 9.490379 ACTTAAGGGATCAATTATGAACGATAC 57.510 33.333 7.53 0.00 39.49 2.24
666 667 1.687123 AGAATACTCGGCCGTATGCTT 59.313 47.619 27.15 13.33 32.91 3.91
672 673 1.337071 CTCGGCCGTATGCTTCTCTAA 59.663 52.381 27.15 0.00 40.92 2.10
706 707 3.316588 TCGGCTAGAGATGCTCTAAGTTG 59.683 47.826 5.75 0.00 41.74 3.16
707 708 3.316588 CGGCTAGAGATGCTCTAAGTTGA 59.683 47.826 5.75 0.00 41.74 3.18
868 869 5.667626 TGAAGATAGAAAAGCCCTACATCCT 59.332 40.000 0.00 0.00 0.00 3.24
869 870 6.844388 TGAAGATAGAAAAGCCCTACATCCTA 59.156 38.462 0.00 0.00 0.00 2.94
997 1004 2.866762 GCCGATCTCACCTATTGTTCAC 59.133 50.000 0.00 0.00 0.00 3.18
1011 1018 1.948834 TGTTCACACATGACTGCTTGG 59.051 47.619 0.00 0.00 33.38 3.61
1507 2150 1.076533 TTTTCTCGACGGCGCTGATC 61.077 55.000 25.98 15.38 37.46 2.92
1679 2322 8.586273 GTTTCGTGGATGAATTGATAATTTGTG 58.414 33.333 0.00 0.00 0.00 3.33
1794 2437 1.268999 TGCCGTGCTGATTTGTTGTTC 60.269 47.619 0.00 0.00 0.00 3.18
1796 2439 2.384382 CCGTGCTGATTTGTTGTTCAC 58.616 47.619 0.00 0.00 0.00 3.18
1893 2549 2.964740 CTCGGATTGCTGAGTTCAAGA 58.035 47.619 0.00 0.00 41.66 3.02
1896 2552 2.417933 CGGATTGCTGAGTTCAAGAAGG 59.582 50.000 0.00 0.00 0.00 3.46
1897 2553 3.416156 GGATTGCTGAGTTCAAGAAGGT 58.584 45.455 0.00 0.00 0.00 3.50
1898 2554 3.823304 GGATTGCTGAGTTCAAGAAGGTT 59.177 43.478 0.00 0.00 0.00 3.50
1903 2559 3.496507 GCTGAGTTCAAGAAGGTTGAGAC 59.503 47.826 0.00 0.00 0.00 3.36
1904 2560 4.061596 CTGAGTTCAAGAAGGTTGAGACC 58.938 47.826 0.00 0.00 46.92 3.85
1914 2570 0.310854 GGTTGAGACCTTTTGCCACG 59.689 55.000 0.00 0.00 42.99 4.94
1915 2571 1.305201 GTTGAGACCTTTTGCCACGA 58.695 50.000 0.00 0.00 0.00 4.35
1916 2572 1.264288 GTTGAGACCTTTTGCCACGAG 59.736 52.381 0.00 0.00 0.00 4.18
1917 2573 0.250295 TGAGACCTTTTGCCACGAGG 60.250 55.000 0.00 0.00 36.62 4.63
1918 2574 0.250338 GAGACCTTTTGCCACGAGGT 60.250 55.000 0.00 0.00 46.11 3.85
1919 2575 4.475527 ACCTTTTGCCACGAGGTC 57.524 55.556 0.00 0.00 39.55 3.85
1921 2577 0.106918 ACCTTTTGCCACGAGGTCAA 60.107 50.000 0.00 2.84 39.55 3.18
1922 2578 1.247567 CCTTTTGCCACGAGGTCAAT 58.752 50.000 0.00 0.00 37.19 2.57
1923 2579 1.068333 CCTTTTGCCACGAGGTCAATG 60.068 52.381 0.00 2.72 37.19 2.82
1924 2580 1.879380 CTTTTGCCACGAGGTCAATGA 59.121 47.619 0.00 0.00 37.19 2.57
1925 2581 1.234821 TTTGCCACGAGGTCAATGAC 58.765 50.000 4.51 4.51 37.19 3.06
1926 2582 0.948623 TTGCCACGAGGTCAATGACG 60.949 55.000 7.35 0.00 37.19 4.35
1928 2584 1.447838 CCACGAGGTCAATGACGGG 60.448 63.158 7.35 0.00 32.65 5.28
1929 2585 2.100631 CACGAGGTCAATGACGGGC 61.101 63.158 7.35 0.00 32.65 6.13
1930 2586 2.264480 CGAGGTCAATGACGGGCA 59.736 61.111 7.35 0.00 32.65 5.36
1932 2588 1.296715 GAGGTCAATGACGGGCACT 59.703 57.895 7.35 0.00 32.65 4.40
1933 2589 1.003355 AGGTCAATGACGGGCACTG 60.003 57.895 7.35 0.00 42.99 3.66
1934 2590 2.690778 GGTCAATGACGGGCACTGC 61.691 63.158 7.35 0.00 39.14 4.40
1944 2600 4.821935 GGCACTGCCTGGTTAACT 57.178 55.556 13.28 0.00 46.69 2.24
1945 2601 2.257353 GGCACTGCCTGGTTAACTG 58.743 57.895 13.28 0.00 46.69 3.16
1946 2602 1.244019 GGCACTGCCTGGTTAACTGG 61.244 60.000 13.28 9.37 46.69 4.00
1954 2610 1.000843 CCTGGTTAACTGGCAAAAGGC 59.999 52.381 5.42 0.00 43.74 4.35
1964 2620 3.538379 GCAAAAGGCATTGGAAGGG 57.462 52.632 5.39 0.00 43.97 3.95
1965 2621 0.036105 GCAAAAGGCATTGGAAGGGG 60.036 55.000 5.39 0.00 43.97 4.79
1966 2622 0.036105 CAAAAGGCATTGGAAGGGGC 60.036 55.000 0.00 0.00 0.00 5.80
1967 2623 1.200760 AAAAGGCATTGGAAGGGGCC 61.201 55.000 0.00 0.00 46.77 5.80
1970 2626 4.759205 GCATTGGAAGGGGCCCGT 62.759 66.667 18.95 15.68 0.00 5.28
1971 2627 2.755469 CATTGGAAGGGGCCCGTG 60.755 66.667 19.90 6.24 0.00 4.94
1972 2628 2.938798 ATTGGAAGGGGCCCGTGA 60.939 61.111 19.90 5.13 0.00 4.35
1973 2629 2.983879 ATTGGAAGGGGCCCGTGAG 61.984 63.158 19.90 0.00 0.00 3.51
1988 2644 3.680642 CGTGAGGTCAAATAGGCATTG 57.319 47.619 0.00 0.00 0.00 2.82
2095 2751 2.009042 GCTCTTCACCTTGGTGATCGG 61.009 57.143 21.39 14.68 32.91 4.18
2202 2858 0.589229 CTACGCTGATGACGTCGTCC 60.589 60.000 29.89 17.15 43.88 4.79
2210 2866 1.469308 GATGACGTCGTCCTCTTCTGT 59.531 52.381 24.44 0.00 0.00 3.41
2280 2936 2.044946 GGCAGGCATCGGGACTTT 60.045 61.111 0.00 0.00 25.15 2.66
2345 3001 0.101399 ATGACGAGACGACCTGCATC 59.899 55.000 0.00 0.00 0.00 3.91
2752 3473 3.186047 GCTGCGTACGCGATGGTT 61.186 61.111 32.65 0.00 45.51 3.67
2772 3493 2.185867 GGCTCCAACGCACGGATA 59.814 61.111 0.00 0.00 0.00 2.59
2783 3504 4.295119 ACGGATACATCGCGCCCC 62.295 66.667 0.00 0.00 0.00 5.80
2810 3531 2.185350 CTCAAGCTGCCCGACGAT 59.815 61.111 0.00 0.00 0.00 3.73
2946 3669 3.003173 CTCGCCTCCCTTGTCCCA 61.003 66.667 0.00 0.00 0.00 4.37
2980 3703 4.056125 CCTGCTCCGTCGCTGACA 62.056 66.667 8.91 0.00 32.09 3.58
3049 3774 0.328258 GGTGGCCATGGTTCAGTACT 59.672 55.000 9.72 0.00 0.00 2.73
3180 3905 0.531974 TATTCGCTGGTTCCATCCGC 60.532 55.000 7.02 0.79 0.00 5.54
3244 3969 1.429463 GATCAAGTTCTTCGCGTGGT 58.571 50.000 5.77 0.00 0.00 4.16
3258 3983 1.903877 CGTGGTTGGCTCTCCAGGAT 61.904 60.000 0.00 0.00 44.53 3.24
3270 3995 3.303189 CAGGATCGGTGCTGGACT 58.697 61.111 9.70 0.00 39.85 3.85
3273 3998 2.581354 GATCGGTGCTGGACTGCT 59.419 61.111 2.91 0.00 0.00 4.24
3332 4057 1.227497 GCCTCTTCTGCGATCAGGG 60.227 63.158 0.00 0.00 40.69 4.45
3579 4305 3.978193 TTTGATGGCGGCACCCCT 61.978 61.111 16.34 0.00 37.83 4.79
3660 4386 4.262506 GGAGCGACTGGGTTAGCTATAATT 60.263 45.833 0.00 0.00 40.39 1.40
3671 4397 6.238648 GGTTAGCTATAATTGCACCATAGGT 58.761 40.000 14.18 14.18 36.98 3.08
3724 4451 2.085262 CCTCTATCATGCTCGCGCG 61.085 63.158 26.76 26.76 39.65 6.86
4116 4843 4.344359 AGAAGGTTGAGACAAAGACCTC 57.656 45.455 0.00 0.00 41.49 3.85
4606 5609 8.481314 ACATATGGCTATGAGTTAGATACCATG 58.519 37.037 7.80 0.00 38.49 3.66
4680 5683 4.102996 TGAGGCTCACATGGCTTGATTATA 59.897 41.667 14.43 0.00 43.09 0.98
4992 8169 6.185511 CCTGAAGCATGGGATCATATATGTT 58.814 40.000 12.42 4.29 31.33 2.71
5109 8313 5.469479 ACGATTCAGCTTTGGGTAAATTTG 58.531 37.500 0.00 0.00 0.00 2.32
5291 8512 1.908065 GCGTCATGCCATGGTTTTAC 58.092 50.000 14.67 6.49 37.76 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.180029 GGCAATGGCACTTGATGACT 58.820 50.000 0.58 0.00 43.71 3.41
6 7 1.135199 CAGGCAATGGCACTTGATGAC 60.135 52.381 10.05 0.07 43.71 3.06
7 8 1.179152 CAGGCAATGGCACTTGATGA 58.821 50.000 10.05 0.00 43.71 2.92
8 9 0.459585 GCAGGCAATGGCACTTGATG 60.460 55.000 10.05 0.00 43.71 3.07
9 10 1.895238 GCAGGCAATGGCACTTGAT 59.105 52.632 10.05 0.00 43.71 2.57
10 11 2.628696 CGCAGGCAATGGCACTTGA 61.629 57.895 10.05 0.00 43.71 3.02
11 12 2.126228 CGCAGGCAATGGCACTTG 60.126 61.111 10.05 0.00 43.71 3.16
12 13 3.376078 CCGCAGGCAATGGCACTT 61.376 61.111 10.05 0.00 46.14 3.16
30 31 2.845752 TAAACTAGGCGCGGCACCAG 62.846 60.000 34.94 27.28 0.00 4.00
31 32 2.845752 CTAAACTAGGCGCGGCACCA 62.846 60.000 34.94 17.76 0.00 4.17
55 56 1.396653 CCATCCAGGATGTTTCAGCC 58.603 55.000 25.35 0.00 40.67 4.85
58 59 1.710244 ACACCCATCCAGGATGTTTCA 59.290 47.619 25.35 0.00 41.22 2.69
101 102 5.007682 ACAACCGTATAAAATGGCACTCTT 58.992 37.500 0.00 0.00 37.86 2.85
102 103 4.585879 ACAACCGTATAAAATGGCACTCT 58.414 39.130 0.00 0.00 37.86 3.24
103 104 4.957759 ACAACCGTATAAAATGGCACTC 57.042 40.909 0.00 0.00 37.86 3.51
104 105 5.007682 AGAACAACCGTATAAAATGGCACT 58.992 37.500 0.00 0.00 37.86 4.40
105 106 5.305139 AGAACAACCGTATAAAATGGCAC 57.695 39.130 0.00 0.00 37.86 5.01
106 107 5.473846 TGAAGAACAACCGTATAAAATGGCA 59.526 36.000 0.00 0.00 37.86 4.92
107 108 5.945155 TGAAGAACAACCGTATAAAATGGC 58.055 37.500 0.00 0.00 37.86 4.40
108 109 7.372451 TCTGAAGAACAACCGTATAAAATGG 57.628 36.000 0.00 0.00 40.50 3.16
109 110 9.490663 GAATCTGAAGAACAACCGTATAAAATG 57.509 33.333 0.00 0.00 0.00 2.32
110 111 8.388103 CGAATCTGAAGAACAACCGTATAAAAT 58.612 33.333 0.00 0.00 0.00 1.82
111 112 7.385752 ACGAATCTGAAGAACAACCGTATAAAA 59.614 33.333 0.00 0.00 0.00 1.52
112 113 6.869913 ACGAATCTGAAGAACAACCGTATAAA 59.130 34.615 0.00 0.00 0.00 1.40
113 114 6.392354 ACGAATCTGAAGAACAACCGTATAA 58.608 36.000 0.00 0.00 0.00 0.98
114 115 5.957798 ACGAATCTGAAGAACAACCGTATA 58.042 37.500 0.00 0.00 0.00 1.47
115 116 4.817517 ACGAATCTGAAGAACAACCGTAT 58.182 39.130 0.00 0.00 0.00 3.06
116 117 4.232221 GACGAATCTGAAGAACAACCGTA 58.768 43.478 0.00 0.00 0.00 4.02
117 118 3.057734 GACGAATCTGAAGAACAACCGT 58.942 45.455 0.00 0.00 0.00 4.83
194 195 8.725148 CATCAATATACTCTTCTTGCCAATACC 58.275 37.037 0.00 0.00 0.00 2.73
202 203 6.648310 ACCGATGCATCAATATACTCTTCTTG 59.352 38.462 25.70 4.05 0.00 3.02
203 204 6.648310 CACCGATGCATCAATATACTCTTCTT 59.352 38.462 25.70 0.00 0.00 2.52
221 222 2.095263 AGTGAATTTTTCGCCACCGATG 60.095 45.455 0.00 0.00 43.97 3.84
224 225 2.739913 TCTAGTGAATTTTTCGCCACCG 59.260 45.455 0.00 0.00 40.99 4.94
225 226 4.156008 ACATCTAGTGAATTTTTCGCCACC 59.844 41.667 0.00 0.00 40.99 4.61
231 232 6.303259 GTGCACGAACATCTAGTGAATTTTTC 59.697 38.462 0.00 0.00 38.06 2.29
239 240 4.098055 AGTAGTGCACGAACATCTAGTG 57.902 45.455 22.19 0.00 38.77 2.74
270 271 4.437239 ACATTGCATCCTCTCTAGTTTCG 58.563 43.478 0.00 0.00 0.00 3.46
272 273 4.225942 TGGACATTGCATCCTCTCTAGTTT 59.774 41.667 6.40 0.00 37.13 2.66
273 274 3.776969 TGGACATTGCATCCTCTCTAGTT 59.223 43.478 6.40 0.00 37.13 2.24
274 275 3.378512 TGGACATTGCATCCTCTCTAGT 58.621 45.455 6.40 0.00 37.13 2.57
275 276 4.141756 ACTTGGACATTGCATCCTCTCTAG 60.142 45.833 6.40 0.00 37.13 2.43
276 277 3.776969 ACTTGGACATTGCATCCTCTCTA 59.223 43.478 6.40 0.00 37.13 2.43
277 278 2.575279 ACTTGGACATTGCATCCTCTCT 59.425 45.455 6.40 0.00 37.13 3.10
278 279 2.996631 ACTTGGACATTGCATCCTCTC 58.003 47.619 6.40 0.00 37.13 3.20
279 280 3.446442 AACTTGGACATTGCATCCTCT 57.554 42.857 6.40 0.00 37.13 3.69
280 281 5.393461 CCTTAAACTTGGACATTGCATCCTC 60.393 44.000 6.40 0.00 37.13 3.71
281 282 4.463891 CCTTAAACTTGGACATTGCATCCT 59.536 41.667 6.40 0.00 37.13 3.24
282 283 4.462483 TCCTTAAACTTGGACATTGCATCC 59.538 41.667 0.00 0.00 36.70 3.51
283 284 5.415701 TCTCCTTAAACTTGGACATTGCATC 59.584 40.000 0.00 0.00 0.00 3.91
284 285 5.183904 GTCTCCTTAAACTTGGACATTGCAT 59.816 40.000 0.00 0.00 0.00 3.96
285 286 4.518970 GTCTCCTTAAACTTGGACATTGCA 59.481 41.667 0.00 0.00 0.00 4.08
286 287 4.378459 CGTCTCCTTAAACTTGGACATTGC 60.378 45.833 0.00 0.00 0.00 3.56
287 288 4.154195 CCGTCTCCTTAAACTTGGACATTG 59.846 45.833 0.00 0.00 0.00 2.82
288 289 4.041198 TCCGTCTCCTTAAACTTGGACATT 59.959 41.667 0.00 0.00 0.00 2.71
289 290 3.581332 TCCGTCTCCTTAAACTTGGACAT 59.419 43.478 0.00 0.00 0.00 3.06
290 291 2.967201 TCCGTCTCCTTAAACTTGGACA 59.033 45.455 0.00 0.00 0.00 4.02
291 292 3.257624 TCTCCGTCTCCTTAAACTTGGAC 59.742 47.826 0.00 0.00 0.00 4.02
292 293 3.503365 TCTCCGTCTCCTTAAACTTGGA 58.497 45.455 0.00 0.00 0.00 3.53
293 294 3.955650 TCTCCGTCTCCTTAAACTTGG 57.044 47.619 0.00 0.00 0.00 3.61
294 295 4.628074 TGTTCTCCGTCTCCTTAAACTTG 58.372 43.478 0.00 0.00 0.00 3.16
295 296 4.950205 TGTTCTCCGTCTCCTTAAACTT 57.050 40.909 0.00 0.00 0.00 2.66
296 297 4.587684 TCTTGTTCTCCGTCTCCTTAAACT 59.412 41.667 0.00 0.00 0.00 2.66
297 298 4.879598 TCTTGTTCTCCGTCTCCTTAAAC 58.120 43.478 0.00 0.00 0.00 2.01
298 299 5.303589 TCTTCTTGTTCTCCGTCTCCTTAAA 59.696 40.000 0.00 0.00 0.00 1.52
299 300 4.831155 TCTTCTTGTTCTCCGTCTCCTTAA 59.169 41.667 0.00 0.00 0.00 1.85
300 301 4.404640 TCTTCTTGTTCTCCGTCTCCTTA 58.595 43.478 0.00 0.00 0.00 2.69
301 302 3.231818 TCTTCTTGTTCTCCGTCTCCTT 58.768 45.455 0.00 0.00 0.00 3.36
302 303 2.877866 TCTTCTTGTTCTCCGTCTCCT 58.122 47.619 0.00 0.00 0.00 3.69
303 304 3.006003 ACTTCTTCTTGTTCTCCGTCTCC 59.994 47.826 0.00 0.00 0.00 3.71
304 305 3.984633 CACTTCTTCTTGTTCTCCGTCTC 59.015 47.826 0.00 0.00 0.00 3.36
305 306 3.385111 ACACTTCTTCTTGTTCTCCGTCT 59.615 43.478 0.00 0.00 0.00 4.18
306 307 3.718815 ACACTTCTTCTTGTTCTCCGTC 58.281 45.455 0.00 0.00 0.00 4.79
307 308 3.821421 ACACTTCTTCTTGTTCTCCGT 57.179 42.857 0.00 0.00 0.00 4.69
308 309 4.617959 TGTACACTTCTTCTTGTTCTCCG 58.382 43.478 0.00 0.00 0.00 4.63
309 310 6.147985 GGATTGTACACTTCTTCTTGTTCTCC 59.852 42.308 0.00 0.00 0.00 3.71
310 311 6.147985 GGGATTGTACACTTCTTCTTGTTCTC 59.852 42.308 0.00 0.00 0.00 2.87
311 312 5.998363 GGGATTGTACACTTCTTCTTGTTCT 59.002 40.000 0.00 0.00 0.00 3.01
312 313 5.107065 CGGGATTGTACACTTCTTCTTGTTC 60.107 44.000 0.00 0.00 0.00 3.18
313 314 4.755123 CGGGATTGTACACTTCTTCTTGTT 59.245 41.667 0.00 0.00 0.00 2.83
314 315 4.039973 TCGGGATTGTACACTTCTTCTTGT 59.960 41.667 0.00 0.00 0.00 3.16
315 316 4.566004 TCGGGATTGTACACTTCTTCTTG 58.434 43.478 0.00 0.00 0.00 3.02
316 317 4.527038 TCTCGGGATTGTACACTTCTTCTT 59.473 41.667 0.00 0.00 0.00 2.52
317 318 4.087182 TCTCGGGATTGTACACTTCTTCT 58.913 43.478 0.00 0.00 0.00 2.85
318 319 4.451629 TCTCGGGATTGTACACTTCTTC 57.548 45.455 0.00 0.00 0.00 2.87
319 320 4.822026 CTTCTCGGGATTGTACACTTCTT 58.178 43.478 0.00 0.00 0.00 2.52
320 321 3.368531 GCTTCTCGGGATTGTACACTTCT 60.369 47.826 0.00 0.00 0.00 2.85
321 322 2.930682 GCTTCTCGGGATTGTACACTTC 59.069 50.000 0.00 0.00 0.00 3.01
322 323 2.354805 GGCTTCTCGGGATTGTACACTT 60.355 50.000 0.00 0.00 0.00 3.16
323 324 1.207329 GGCTTCTCGGGATTGTACACT 59.793 52.381 0.00 0.00 0.00 3.55
324 325 1.066430 TGGCTTCTCGGGATTGTACAC 60.066 52.381 0.00 0.00 0.00 2.90
325 326 1.271856 TGGCTTCTCGGGATTGTACA 58.728 50.000 0.00 0.00 0.00 2.90
326 327 2.396590 TTGGCTTCTCGGGATTGTAC 57.603 50.000 0.00 0.00 0.00 2.90
327 328 3.964688 TCTATTGGCTTCTCGGGATTGTA 59.035 43.478 0.00 0.00 0.00 2.41
328 329 2.771943 TCTATTGGCTTCTCGGGATTGT 59.228 45.455 0.00 0.00 0.00 2.71
329 330 3.070159 TCTCTATTGGCTTCTCGGGATTG 59.930 47.826 0.00 0.00 0.00 2.67
330 331 3.309296 TCTCTATTGGCTTCTCGGGATT 58.691 45.455 0.00 0.00 0.00 3.01
331 332 2.964209 TCTCTATTGGCTTCTCGGGAT 58.036 47.619 0.00 0.00 0.00 3.85
332 333 2.454336 TCTCTATTGGCTTCTCGGGA 57.546 50.000 0.00 0.00 0.00 5.14
333 334 3.543680 TTTCTCTATTGGCTTCTCGGG 57.456 47.619 0.00 0.00 0.00 5.14
334 335 3.311048 GCTTTTCTCTATTGGCTTCTCGG 59.689 47.826 0.00 0.00 0.00 4.63
335 336 3.935203 TGCTTTTCTCTATTGGCTTCTCG 59.065 43.478 0.00 0.00 0.00 4.04
336 337 5.182001 TGTTGCTTTTCTCTATTGGCTTCTC 59.818 40.000 0.00 0.00 0.00 2.87
337 338 5.072741 TGTTGCTTTTCTCTATTGGCTTCT 58.927 37.500 0.00 0.00 0.00 2.85
338 339 5.376854 TGTTGCTTTTCTCTATTGGCTTC 57.623 39.130 0.00 0.00 0.00 3.86
339 340 5.789643 TTGTTGCTTTTCTCTATTGGCTT 57.210 34.783 0.00 0.00 0.00 4.35
340 341 5.244626 ACATTGTTGCTTTTCTCTATTGGCT 59.755 36.000 0.00 0.00 0.00 4.75
341 342 5.473039 ACATTGTTGCTTTTCTCTATTGGC 58.527 37.500 0.00 0.00 0.00 4.52
342 343 6.680810 TGACATTGTTGCTTTTCTCTATTGG 58.319 36.000 0.00 0.00 0.00 3.16
343 344 6.307318 GCTGACATTGTTGCTTTTCTCTATTG 59.693 38.462 8.01 0.00 0.00 1.90
344 345 6.016024 TGCTGACATTGTTGCTTTTCTCTATT 60.016 34.615 13.98 0.00 0.00 1.73
345 346 5.474532 TGCTGACATTGTTGCTTTTCTCTAT 59.525 36.000 13.98 0.00 0.00 1.98
346 347 4.821260 TGCTGACATTGTTGCTTTTCTCTA 59.179 37.500 13.98 0.00 0.00 2.43
347 348 3.633525 TGCTGACATTGTTGCTTTTCTCT 59.366 39.130 13.98 0.00 0.00 3.10
348 349 3.968649 TGCTGACATTGTTGCTTTTCTC 58.031 40.909 13.98 0.00 0.00 2.87
349 350 3.382546 ACTGCTGACATTGTTGCTTTTCT 59.617 39.130 13.98 0.00 0.00 2.52
350 351 3.488310 CACTGCTGACATTGTTGCTTTTC 59.512 43.478 13.98 0.00 0.00 2.29
351 352 3.130869 TCACTGCTGACATTGTTGCTTTT 59.869 39.130 13.98 0.54 0.00 2.27
352 353 2.689471 TCACTGCTGACATTGTTGCTTT 59.311 40.909 13.98 2.38 0.00 3.51
353 354 2.300433 TCACTGCTGACATTGTTGCTT 58.700 42.857 13.98 2.64 0.00 3.91
354 355 1.971481 TCACTGCTGACATTGTTGCT 58.029 45.000 13.98 0.00 0.00 3.91
355 356 2.291465 TCTTCACTGCTGACATTGTTGC 59.709 45.455 0.00 8.25 0.00 4.17
356 357 3.811497 TCTCTTCACTGCTGACATTGTTG 59.189 43.478 0.00 0.00 0.00 3.33
357 358 4.077300 TCTCTTCACTGCTGACATTGTT 57.923 40.909 0.00 0.00 0.00 2.83
358 359 3.758755 TCTCTTCACTGCTGACATTGT 57.241 42.857 0.00 0.00 0.00 2.71
359 360 6.592994 TCTTTATCTCTTCACTGCTGACATTG 59.407 38.462 0.00 0.00 0.00 2.82
360 361 6.705302 TCTTTATCTCTTCACTGCTGACATT 58.295 36.000 0.00 0.00 0.00 2.71
361 362 6.291648 TCTTTATCTCTTCACTGCTGACAT 57.708 37.500 0.00 0.00 0.00 3.06
362 363 5.728637 TCTTTATCTCTTCACTGCTGACA 57.271 39.130 0.00 0.00 0.00 3.58
363 364 6.402011 GCTTTCTTTATCTCTTCACTGCTGAC 60.402 42.308 0.00 0.00 0.00 3.51
364 365 5.641209 GCTTTCTTTATCTCTTCACTGCTGA 59.359 40.000 0.00 0.00 0.00 4.26
365 366 5.445673 CGCTTTCTTTATCTCTTCACTGCTG 60.446 44.000 0.00 0.00 0.00 4.41
366 367 4.629200 CGCTTTCTTTATCTCTTCACTGCT 59.371 41.667 0.00 0.00 0.00 4.24
367 368 4.390297 ACGCTTTCTTTATCTCTTCACTGC 59.610 41.667 0.00 0.00 0.00 4.40
368 369 6.146184 TCAACGCTTTCTTTATCTCTTCACTG 59.854 38.462 0.00 0.00 0.00 3.66
369 370 6.223852 TCAACGCTTTCTTTATCTCTTCACT 58.776 36.000 0.00 0.00 0.00 3.41
370 371 6.467723 TCAACGCTTTCTTTATCTCTTCAC 57.532 37.500 0.00 0.00 0.00 3.18
371 372 6.092670 CCATCAACGCTTTCTTTATCTCTTCA 59.907 38.462 0.00 0.00 0.00 3.02
372 373 6.313905 TCCATCAACGCTTTCTTTATCTCTTC 59.686 38.462 0.00 0.00 0.00 2.87
373 374 6.092807 GTCCATCAACGCTTTCTTTATCTCTT 59.907 38.462 0.00 0.00 0.00 2.85
374 375 5.582665 GTCCATCAACGCTTTCTTTATCTCT 59.417 40.000 0.00 0.00 0.00 3.10
375 376 5.582665 AGTCCATCAACGCTTTCTTTATCTC 59.417 40.000 0.00 0.00 0.00 2.75
376 377 5.491982 AGTCCATCAACGCTTTCTTTATCT 58.508 37.500 0.00 0.00 0.00 1.98
377 378 5.803020 AGTCCATCAACGCTTTCTTTATC 57.197 39.130 0.00 0.00 0.00 1.75
378 379 6.407202 ACTAGTCCATCAACGCTTTCTTTAT 58.593 36.000 0.00 0.00 0.00 1.40
379 380 5.790593 ACTAGTCCATCAACGCTTTCTTTA 58.209 37.500 0.00 0.00 0.00 1.85
380 381 4.642429 ACTAGTCCATCAACGCTTTCTTT 58.358 39.130 0.00 0.00 0.00 2.52
381 382 4.273148 ACTAGTCCATCAACGCTTTCTT 57.727 40.909 0.00 0.00 0.00 2.52
382 383 3.963428 ACTAGTCCATCAACGCTTTCT 57.037 42.857 0.00 0.00 0.00 2.52
383 384 4.113354 CCTACTAGTCCATCAACGCTTTC 58.887 47.826 0.00 0.00 0.00 2.62
384 385 3.767673 TCCTACTAGTCCATCAACGCTTT 59.232 43.478 0.00 0.00 0.00 3.51
385 386 3.362706 TCCTACTAGTCCATCAACGCTT 58.637 45.455 0.00 0.00 0.00 4.68
386 387 2.952978 CTCCTACTAGTCCATCAACGCT 59.047 50.000 0.00 0.00 0.00 5.07
387 388 2.544069 GCTCCTACTAGTCCATCAACGC 60.544 54.545 0.00 0.00 0.00 4.84
388 389 2.952978 AGCTCCTACTAGTCCATCAACG 59.047 50.000 0.00 0.00 0.00 4.10
389 390 3.702045 ACAGCTCCTACTAGTCCATCAAC 59.298 47.826 0.00 0.00 0.00 3.18
390 391 3.982516 ACAGCTCCTACTAGTCCATCAA 58.017 45.455 0.00 0.00 0.00 2.57
391 392 3.671740 ACAGCTCCTACTAGTCCATCA 57.328 47.619 0.00 0.00 0.00 3.07
392 393 5.378332 TCTAACAGCTCCTACTAGTCCATC 58.622 45.833 0.00 0.00 0.00 3.51
393 394 5.132985 TCTCTAACAGCTCCTACTAGTCCAT 59.867 44.000 0.00 0.00 0.00 3.41
394 395 4.473922 TCTCTAACAGCTCCTACTAGTCCA 59.526 45.833 0.00 0.00 0.00 4.02
395 396 5.038651 TCTCTAACAGCTCCTACTAGTCC 57.961 47.826 0.00 0.00 0.00 3.85
396 397 6.117488 ACTTCTCTAACAGCTCCTACTAGTC 58.883 44.000 0.00 0.00 0.00 2.59
397 398 6.069705 ACTTCTCTAACAGCTCCTACTAGT 57.930 41.667 0.00 0.00 0.00 2.57
398 399 6.376018 ACAACTTCTCTAACAGCTCCTACTAG 59.624 42.308 0.00 0.00 0.00 2.57
399 400 6.151312 CACAACTTCTCTAACAGCTCCTACTA 59.849 42.308 0.00 0.00 0.00 1.82
400 401 5.047660 CACAACTTCTCTAACAGCTCCTACT 60.048 44.000 0.00 0.00 0.00 2.57
401 402 5.164954 CACAACTTCTCTAACAGCTCCTAC 58.835 45.833 0.00 0.00 0.00 3.18
402 403 4.833380 ACACAACTTCTCTAACAGCTCCTA 59.167 41.667 0.00 0.00 0.00 2.94
403 404 3.643792 ACACAACTTCTCTAACAGCTCCT 59.356 43.478 0.00 0.00 0.00 3.69
404 405 3.996480 ACACAACTTCTCTAACAGCTCC 58.004 45.455 0.00 0.00 0.00 4.70
405 406 5.755861 AGAAACACAACTTCTCTAACAGCTC 59.244 40.000 0.00 0.00 0.00 4.09
406 407 5.675538 AGAAACACAACTTCTCTAACAGCT 58.324 37.500 0.00 0.00 0.00 4.24
407 408 5.993106 AGAAACACAACTTCTCTAACAGC 57.007 39.130 0.00 0.00 0.00 4.40
408 409 9.261180 TCAATAGAAACACAACTTCTCTAACAG 57.739 33.333 0.00 0.00 34.90 3.16
409 410 9.607988 TTCAATAGAAACACAACTTCTCTAACA 57.392 29.630 0.00 0.00 34.90 2.41
411 412 9.832445 ACTTCAATAGAAACACAACTTCTCTAA 57.168 29.630 0.00 0.00 34.90 2.10
412 413 9.261180 CACTTCAATAGAAACACAACTTCTCTA 57.739 33.333 0.00 0.00 34.90 2.43
413 414 7.770897 ACACTTCAATAGAAACACAACTTCTCT 59.229 33.333 0.00 0.00 34.90 3.10
414 415 7.852945 CACACTTCAATAGAAACACAACTTCTC 59.147 37.037 0.00 0.00 34.90 2.87
415 416 7.336931 ACACACTTCAATAGAAACACAACTTCT 59.663 33.333 0.00 0.00 37.00 2.85
416 417 7.472543 ACACACTTCAATAGAAACACAACTTC 58.527 34.615 0.00 0.00 32.35 3.01
417 418 7.391148 ACACACTTCAATAGAAACACAACTT 57.609 32.000 0.00 0.00 32.35 2.66
418 419 7.769044 ACTACACACTTCAATAGAAACACAACT 59.231 33.333 0.00 0.00 32.35 3.16
419 420 7.916552 ACTACACACTTCAATAGAAACACAAC 58.083 34.615 0.00 0.00 32.35 3.32
420 421 8.500753 AACTACACACTTCAATAGAAACACAA 57.499 30.769 0.00 0.00 32.35 3.33
421 422 7.985184 AGAACTACACACTTCAATAGAAACACA 59.015 33.333 0.00 0.00 32.35 3.72
422 423 8.366671 AGAACTACACACTTCAATAGAAACAC 57.633 34.615 0.00 0.00 32.35 3.32
423 424 8.958119 AAGAACTACACACTTCAATAGAAACA 57.042 30.769 0.00 0.00 32.35 2.83
427 428 9.391006 ACAAAAAGAACTACACACTTCAATAGA 57.609 29.630 0.00 0.00 0.00 1.98
428 429 9.438291 CACAAAAAGAACTACACACTTCAATAG 57.562 33.333 0.00 0.00 0.00 1.73
429 430 9.168451 TCACAAAAAGAACTACACACTTCAATA 57.832 29.630 0.00 0.00 0.00 1.90
430 431 8.050778 TCACAAAAAGAACTACACACTTCAAT 57.949 30.769 0.00 0.00 0.00 2.57
431 432 7.441890 TCACAAAAAGAACTACACACTTCAA 57.558 32.000 0.00 0.00 0.00 2.69
432 433 7.465379 CGATCACAAAAAGAACTACACACTTCA 60.465 37.037 0.00 0.00 0.00 3.02
433 434 6.846283 CGATCACAAAAAGAACTACACACTTC 59.154 38.462 0.00 0.00 0.00 3.01
434 435 6.238374 CCGATCACAAAAAGAACTACACACTT 60.238 38.462 0.00 0.00 0.00 3.16
435 436 5.236478 CCGATCACAAAAAGAACTACACACT 59.764 40.000 0.00 0.00 0.00 3.55
436 437 5.007332 ACCGATCACAAAAAGAACTACACAC 59.993 40.000 0.00 0.00 0.00 3.82
437 438 5.120399 ACCGATCACAAAAAGAACTACACA 58.880 37.500 0.00 0.00 0.00 3.72
438 439 5.668558 ACCGATCACAAAAAGAACTACAC 57.331 39.130 0.00 0.00 0.00 2.90
439 440 6.053005 AGAACCGATCACAAAAAGAACTACA 58.947 36.000 0.00 0.00 0.00 2.74
440 441 6.424207 AGAGAACCGATCACAAAAAGAACTAC 59.576 38.462 0.00 0.00 0.00 2.73
441 442 6.522054 AGAGAACCGATCACAAAAAGAACTA 58.478 36.000 0.00 0.00 0.00 2.24
442 443 5.368989 AGAGAACCGATCACAAAAAGAACT 58.631 37.500 0.00 0.00 0.00 3.01
443 444 5.674933 AGAGAACCGATCACAAAAAGAAC 57.325 39.130 0.00 0.00 0.00 3.01
444 445 7.148639 CGATAAGAGAACCGATCACAAAAAGAA 60.149 37.037 0.00 0.00 0.00 2.52
445 446 6.310467 CGATAAGAGAACCGATCACAAAAAGA 59.690 38.462 0.00 0.00 0.00 2.52
446 447 6.310467 TCGATAAGAGAACCGATCACAAAAAG 59.690 38.462 0.00 0.00 0.00 2.27
447 448 6.160684 TCGATAAGAGAACCGATCACAAAAA 58.839 36.000 0.00 0.00 0.00 1.94
448 449 5.716094 TCGATAAGAGAACCGATCACAAAA 58.284 37.500 0.00 0.00 0.00 2.44
449 450 5.319140 TCGATAAGAGAACCGATCACAAA 57.681 39.130 0.00 0.00 0.00 2.83
450 451 4.976224 TCGATAAGAGAACCGATCACAA 57.024 40.909 0.00 0.00 0.00 3.33
451 452 4.638865 TCTTCGATAAGAGAACCGATCACA 59.361 41.667 0.00 0.00 36.80 3.58
452 453 5.171147 TCTTCGATAAGAGAACCGATCAC 57.829 43.478 0.00 0.00 36.80 3.06
453 454 5.830000 TTCTTCGATAAGAGAACCGATCA 57.170 39.130 0.00 0.00 42.60 2.92
454 455 6.144724 CCAATTCTTCGATAAGAGAACCGATC 59.855 42.308 0.00 0.00 42.60 3.69
455 456 5.986135 CCAATTCTTCGATAAGAGAACCGAT 59.014 40.000 0.00 0.00 42.60 4.18
456 457 5.105473 ACCAATTCTTCGATAAGAGAACCGA 60.105 40.000 0.00 0.00 42.60 4.69
457 458 5.005779 CACCAATTCTTCGATAAGAGAACCG 59.994 44.000 0.00 0.00 42.60 4.44
458 459 6.106673 TCACCAATTCTTCGATAAGAGAACC 58.893 40.000 0.00 0.00 42.60 3.62
459 460 7.332182 ACTTCACCAATTCTTCGATAAGAGAAC 59.668 37.037 0.00 0.00 42.60 3.01
460 461 7.386851 ACTTCACCAATTCTTCGATAAGAGAA 58.613 34.615 0.02 0.02 42.60 2.87
461 462 6.936279 ACTTCACCAATTCTTCGATAAGAGA 58.064 36.000 0.00 0.00 42.60 3.10
462 463 8.759641 CATACTTCACCAATTCTTCGATAAGAG 58.240 37.037 0.00 0.00 42.60 2.85
463 464 8.258007 ACATACTTCACCAATTCTTCGATAAGA 58.742 33.333 0.00 0.00 40.03 2.10
464 465 8.425577 ACATACTTCACCAATTCTTCGATAAG 57.574 34.615 0.00 0.00 0.00 1.73
466 467 9.692749 GATACATACTTCACCAATTCTTCGATA 57.307 33.333 0.00 0.00 0.00 2.92
467 468 7.657761 GGATACATACTTCACCAATTCTTCGAT 59.342 37.037 0.00 0.00 0.00 3.59
468 469 6.984474 GGATACATACTTCACCAATTCTTCGA 59.016 38.462 0.00 0.00 0.00 3.71
469 470 6.761242 TGGATACATACTTCACCAATTCTTCG 59.239 38.462 0.00 0.00 46.17 3.79
514 515 8.665685 CGAAGGCATAAACTTCACTACTTTATT 58.334 33.333 6.07 0.00 43.43 1.40
515 516 7.280205 CCGAAGGCATAAACTTCACTACTTTAT 59.720 37.037 6.07 0.00 46.14 1.40
516 517 6.592607 CCGAAGGCATAAACTTCACTACTTTA 59.407 38.462 6.07 0.00 46.14 1.85
517 518 5.411669 CCGAAGGCATAAACTTCACTACTTT 59.588 40.000 6.07 0.00 46.14 2.66
518 519 4.935808 CCGAAGGCATAAACTTCACTACTT 59.064 41.667 6.07 0.00 46.14 2.24
519 520 4.504858 CCGAAGGCATAAACTTCACTACT 58.495 43.478 6.07 0.00 46.14 2.57
520 521 4.859629 CCGAAGGCATAAACTTCACTAC 57.140 45.455 6.07 0.00 46.14 2.73
533 534 7.685641 AATTAGTTCAATTTTTGACCGAAGGCA 60.686 33.333 0.00 0.00 42.99 4.75
534 535 6.645003 AATTAGTTCAATTTTTGACCGAAGGC 59.355 34.615 0.00 0.00 42.99 4.35
536 537 8.487176 CCAAATTAGTTCAATTTTTGACCGAAG 58.513 33.333 0.00 0.00 42.93 3.79
537 538 7.042389 GCCAAATTAGTTCAATTTTTGACCGAA 60.042 33.333 0.00 0.00 42.93 4.30
538 539 6.422400 GCCAAATTAGTTCAATTTTTGACCGA 59.578 34.615 0.00 0.00 42.93 4.69
539 540 6.201806 TGCCAAATTAGTTCAATTTTTGACCG 59.798 34.615 0.00 0.00 42.93 4.79
540 541 7.489574 TGCCAAATTAGTTCAATTTTTGACC 57.510 32.000 0.00 0.00 42.93 4.02
541 542 9.780413 TTTTGCCAAATTAGTTCAATTTTTGAC 57.220 25.926 0.00 0.00 42.93 3.18
556 557 9.097257 CGGAGTAAAATATCATTTTGCCAAATT 57.903 29.630 7.04 0.00 29.41 1.82
557 558 8.257306 ACGGAGTAAAATATCATTTTGCCAAAT 58.743 29.630 7.04 0.00 41.94 2.32
558 559 7.607250 ACGGAGTAAAATATCATTTTGCCAAA 58.393 30.769 7.04 0.00 41.94 3.28
559 560 7.164230 ACGGAGTAAAATATCATTTTGCCAA 57.836 32.000 7.04 0.00 41.94 4.52
560 561 6.767524 ACGGAGTAAAATATCATTTTGCCA 57.232 33.333 7.04 0.00 41.94 4.92
561 562 9.575783 TTTAACGGAGTAAAATATCATTTTGCC 57.424 29.630 7.04 5.40 45.00 4.52
572 573 9.170734 GATCCCTTAAGTTTAACGGAGTAAAAT 57.829 33.333 0.97 0.00 45.00 1.82
573 574 8.156165 TGATCCCTTAAGTTTAACGGAGTAAAA 58.844 33.333 0.97 0.00 45.00 1.52
574 575 7.678837 TGATCCCTTAAGTTTAACGGAGTAAA 58.321 34.615 0.97 0.00 45.00 2.01
575 576 7.243604 TGATCCCTTAAGTTTAACGGAGTAA 57.756 36.000 0.97 0.00 45.00 2.24
576 577 6.855763 TGATCCCTTAAGTTTAACGGAGTA 57.144 37.500 0.97 0.00 45.00 2.59
578 579 7.625828 AATTGATCCCTTAAGTTTAACGGAG 57.374 36.000 0.97 0.00 33.43 4.63
579 580 9.116067 CATAATTGATCCCTTAAGTTTAACGGA 57.884 33.333 0.97 0.00 34.09 4.69
580 581 9.116067 TCATAATTGATCCCTTAAGTTTAACGG 57.884 33.333 0.97 0.00 0.00 4.44
584 585 9.893634 TCGTTCATAATTGATCCCTTAAGTTTA 57.106 29.630 0.97 0.00 0.00 2.01
585 586 8.801882 TCGTTCATAATTGATCCCTTAAGTTT 57.198 30.769 0.97 0.00 0.00 2.66
586 587 8.980481 ATCGTTCATAATTGATCCCTTAAGTT 57.020 30.769 0.97 0.00 0.00 2.66
587 588 9.490379 GTATCGTTCATAATTGATCCCTTAAGT 57.510 33.333 0.97 0.00 0.00 2.24
588 589 8.936864 GGTATCGTTCATAATTGATCCCTTAAG 58.063 37.037 0.00 0.00 0.00 1.85
589 590 7.881232 GGGTATCGTTCATAATTGATCCCTTAA 59.119 37.037 0.00 0.00 31.27 1.85
590 591 7.236847 AGGGTATCGTTCATAATTGATCCCTTA 59.763 37.037 0.00 0.00 36.22 2.69
591 592 6.044404 AGGGTATCGTTCATAATTGATCCCTT 59.956 38.462 0.00 0.00 36.22 3.95
592 593 5.548056 AGGGTATCGTTCATAATTGATCCCT 59.452 40.000 0.00 0.00 35.51 4.20
593 594 5.805728 AGGGTATCGTTCATAATTGATCCC 58.194 41.667 0.00 0.00 32.73 3.85
594 595 7.745620 AAAGGGTATCGTTCATAATTGATCC 57.254 36.000 0.00 0.00 0.00 3.36
596 597 9.284968 CCTAAAAGGGTATCGTTCATAATTGAT 57.715 33.333 0.00 0.00 0.00 2.57
597 598 8.671384 CCTAAAAGGGTATCGTTCATAATTGA 57.329 34.615 0.00 0.00 0.00 2.57
641 642 4.795308 GCATACGGCCGAGTATTCTTTAGT 60.795 45.833 35.90 6.74 35.32 2.24
655 656 7.603024 ACTTATAATTTAGAGAAGCATACGGCC 59.397 37.037 0.00 0.00 46.50 6.13
666 667 9.516546 TCTAGCCGATCACTTATAATTTAGAGA 57.483 33.333 0.00 0.00 0.00 3.10
672 673 7.038659 GCATCTCTAGCCGATCACTTATAATT 58.961 38.462 0.00 0.00 0.00 1.40
810 811 7.869937 TGATTTTGCTCGGTTCAATTTTCAATA 59.130 29.630 0.00 0.00 0.00 1.90
868 869 5.315348 AGGTTTAAGGGCGTGTTTGTTATA 58.685 37.500 0.00 0.00 0.00 0.98
869 870 4.146564 AGGTTTAAGGGCGTGTTTGTTAT 58.853 39.130 0.00 0.00 0.00 1.89
973 980 0.032678 CAATAGGTGAGATCGGCGCT 59.967 55.000 7.64 0.00 0.00 5.92
1011 1018 1.442526 CCATGGATGCGGTCTGCTTC 61.443 60.000 5.56 10.41 46.63 3.86
1128 1145 0.105964 TCCAAGGTTATGGATCGGCG 59.894 55.000 0.00 0.00 44.52 6.46
1154 1171 2.979676 CTTTGCTGCCGACCTGCA 60.980 61.111 0.00 4.08 45.18 4.41
1199 1216 1.237285 CCCTTCTTGCACTTGGTCGG 61.237 60.000 0.00 0.00 0.00 4.79
1527 2170 6.272558 ACTTTATCCAGAACAGGTTCCTAAGT 59.727 38.462 8.47 6.85 40.33 2.24
1528 2171 6.712276 ACTTTATCCAGAACAGGTTCCTAAG 58.288 40.000 8.47 6.36 40.33 2.18
1529 2172 6.697641 ACTTTATCCAGAACAGGTTCCTAA 57.302 37.500 8.47 0.74 40.33 2.69
1530 2173 6.958192 AGTACTTTATCCAGAACAGGTTCCTA 59.042 38.462 8.47 0.00 40.33 2.94
1531 2174 5.785940 AGTACTTTATCCAGAACAGGTTCCT 59.214 40.000 8.47 0.00 40.33 3.36
1532 2175 6.051179 AGTACTTTATCCAGAACAGGTTCC 57.949 41.667 8.47 0.00 40.33 3.62
1533 2176 7.159372 TGAAGTACTTTATCCAGAACAGGTTC 58.841 38.462 10.02 4.00 39.78 3.62
1679 2322 3.107642 TCTGAAAGGTTTCCACGAGAC 57.892 47.619 0.00 0.00 36.36 3.36
1794 2437 4.514066 CACAGATCCATCCATGTATGTGTG 59.486 45.833 7.66 7.66 40.22 3.82
1796 2439 4.711399 ACACAGATCCATCCATGTATGTG 58.289 43.478 5.30 5.30 41.85 3.21
1896 2552 1.264288 CTCGTGGCAAAAGGTCTCAAC 59.736 52.381 0.00 0.00 0.00 3.18
1897 2553 1.593196 CTCGTGGCAAAAGGTCTCAA 58.407 50.000 0.00 0.00 0.00 3.02
1898 2554 0.250295 CCTCGTGGCAAAAGGTCTCA 60.250 55.000 8.00 0.00 0.00 3.27
1903 2559 1.068333 CATTGACCTCGTGGCAAAAGG 60.068 52.381 13.41 13.41 34.70 3.11
1904 2560 1.879380 TCATTGACCTCGTGGCAAAAG 59.121 47.619 14.31 11.18 34.70 2.27
1905 2561 1.606668 GTCATTGACCTCGTGGCAAAA 59.393 47.619 14.31 3.76 34.70 2.44
1906 2562 1.234821 GTCATTGACCTCGTGGCAAA 58.765 50.000 14.31 5.88 34.70 3.68
1907 2563 0.948623 CGTCATTGACCTCGTGGCAA 60.949 55.000 11.12 13.20 36.63 4.52
1908 2564 1.374125 CGTCATTGACCTCGTGGCA 60.374 57.895 11.12 0.00 36.63 4.92
1909 2565 2.100631 CCGTCATTGACCTCGTGGC 61.101 63.158 11.12 0.00 36.63 5.01
1910 2566 1.447838 CCCGTCATTGACCTCGTGG 60.448 63.158 11.12 0.99 39.83 4.94
1911 2567 2.100631 GCCCGTCATTGACCTCGTG 61.101 63.158 11.12 0.00 0.00 4.35
1913 2569 2.100631 GTGCCCGTCATTGACCTCG 61.101 63.158 11.12 0.00 0.00 4.63
1914 2570 1.021390 CAGTGCCCGTCATTGACCTC 61.021 60.000 11.12 1.63 34.68 3.85
1915 2571 1.003355 CAGTGCCCGTCATTGACCT 60.003 57.895 11.12 0.00 34.68 3.85
1916 2572 2.690778 GCAGTGCCCGTCATTGACC 61.691 63.158 11.12 0.00 34.68 4.02
1917 2573 2.690778 GGCAGTGCCCGTCATTGAC 61.691 63.158 24.53 6.73 44.06 3.18
1918 2574 2.359850 GGCAGTGCCCGTCATTGA 60.360 61.111 24.53 0.00 44.06 2.57
1928 2584 2.257353 CCAGTTAACCAGGCAGTGC 58.743 57.895 6.55 6.55 0.00 4.40
1934 2590 1.000843 GCCTTTTGCCAGTTAACCAGG 59.999 52.381 9.72 9.72 0.00 4.45
1935 2591 1.686052 TGCCTTTTGCCAGTTAACCAG 59.314 47.619 0.88 0.00 40.16 4.00
1936 2592 1.781786 TGCCTTTTGCCAGTTAACCA 58.218 45.000 0.88 0.00 40.16 3.67
1938 2594 3.066380 CCAATGCCTTTTGCCAGTTAAC 58.934 45.455 0.00 0.00 40.16 2.01
1940 2596 2.603021 TCCAATGCCTTTTGCCAGTTA 58.397 42.857 0.00 0.00 40.16 2.24
1943 2599 1.338389 CCTTCCAATGCCTTTTGCCAG 60.338 52.381 0.00 0.00 40.16 4.85
1944 2600 0.686224 CCTTCCAATGCCTTTTGCCA 59.314 50.000 0.00 0.00 40.16 4.92
1945 2601 0.036105 CCCTTCCAATGCCTTTTGCC 60.036 55.000 0.00 0.00 40.16 4.52
1946 2602 0.036105 CCCCTTCCAATGCCTTTTGC 60.036 55.000 0.00 0.00 41.77 3.68
1947 2603 0.036105 GCCCCTTCCAATGCCTTTTG 60.036 55.000 0.00 0.00 0.00 2.44
1948 2604 1.200760 GGCCCCTTCCAATGCCTTTT 61.201 55.000 0.00 0.00 40.77 2.27
1949 2605 1.613332 GGCCCCTTCCAATGCCTTT 60.613 57.895 0.00 0.00 40.77 3.11
1950 2606 2.039462 GGCCCCTTCCAATGCCTT 59.961 61.111 0.00 0.00 40.77 4.35
1951 2607 4.079961 GGGCCCCTTCCAATGCCT 62.080 66.667 12.23 0.00 43.50 4.75
1953 2609 4.759205 ACGGGCCCCTTCCAATGC 62.759 66.667 18.66 0.00 0.00 3.56
1954 2610 2.755469 CACGGGCCCCTTCCAATG 60.755 66.667 18.66 0.96 0.00 2.82
1955 2611 2.938798 TCACGGGCCCCTTCCAAT 60.939 61.111 18.66 0.00 0.00 3.16
1956 2612 3.646715 CTCACGGGCCCCTTCCAA 61.647 66.667 18.66 0.00 0.00 3.53
1959 2615 4.097361 GACCTCACGGGCCCCTTC 62.097 72.222 18.66 0.00 39.10 3.46
1960 2616 4.974438 TGACCTCACGGGCCCCTT 62.974 66.667 18.66 0.00 37.62 3.95
1961 2617 4.974438 TTGACCTCACGGGCCCCT 62.974 66.667 18.66 0.12 37.62 4.79
1962 2618 1.917336 TATTTGACCTCACGGGCCCC 61.917 60.000 18.66 0.00 37.62 5.80
1963 2619 0.463833 CTATTTGACCTCACGGGCCC 60.464 60.000 13.57 13.57 37.62 5.80
1964 2620 0.463833 CCTATTTGACCTCACGGGCC 60.464 60.000 0.00 0.00 37.62 5.80
1965 2621 1.095807 GCCTATTTGACCTCACGGGC 61.096 60.000 0.00 0.00 39.55 6.13
1966 2622 0.251916 TGCCTATTTGACCTCACGGG 59.748 55.000 0.00 0.00 41.89 5.28
1967 2623 2.332063 ATGCCTATTTGACCTCACGG 57.668 50.000 0.00 0.00 0.00 4.94
1968 2624 3.063997 GTCAATGCCTATTTGACCTCACG 59.936 47.826 5.46 0.00 0.00 4.35
1969 2625 3.378427 GGTCAATGCCTATTTGACCTCAC 59.622 47.826 22.23 2.69 39.17 3.51
1970 2626 3.010027 TGGTCAATGCCTATTTGACCTCA 59.990 43.478 26.85 12.25 40.83 3.86
1971 2627 3.378427 GTGGTCAATGCCTATTTGACCTC 59.622 47.826 26.85 21.97 40.83 3.85
1972 2628 3.356290 GTGGTCAATGCCTATTTGACCT 58.644 45.455 26.85 0.00 40.83 3.85
1973 2629 2.097466 CGTGGTCAATGCCTATTTGACC 59.903 50.000 22.56 22.56 40.73 4.02
1974 2630 2.477863 GCGTGGTCAATGCCTATTTGAC 60.478 50.000 7.79 7.79 34.45 3.18
1975 2631 1.742831 GCGTGGTCAATGCCTATTTGA 59.257 47.619 0.00 0.00 34.45 2.69
1976 2632 1.531677 CGCGTGGTCAATGCCTATTTG 60.532 52.381 0.00 0.00 37.53 2.32
1977 2633 0.732571 CGCGTGGTCAATGCCTATTT 59.267 50.000 0.00 0.00 37.53 1.40
1978 2634 1.714899 GCGCGTGGTCAATGCCTATT 61.715 55.000 8.43 0.00 37.53 1.73
1979 2635 2.180204 GCGCGTGGTCAATGCCTAT 61.180 57.895 8.43 0.00 37.53 2.57
1980 2636 2.817834 GCGCGTGGTCAATGCCTA 60.818 61.111 8.43 0.00 37.53 3.93
1983 2639 4.794241 GACGCGCGTGGTCAATGC 62.794 66.667 42.90 19.75 37.45 3.56
1984 2640 4.147322 GGACGCGCGTGGTCAATG 62.147 66.667 42.90 5.76 36.12 2.82
1985 2641 3.876589 AAGGACGCGCGTGGTCAAT 62.877 57.895 42.90 14.68 36.12 2.57
1986 2642 4.595538 AAGGACGCGCGTGGTCAA 62.596 61.111 42.90 0.00 36.12 3.18
2095 2751 1.985116 AGGAGGGAGTTGAGGACGC 60.985 63.158 0.00 0.00 0.00 5.19
2280 2936 1.195900 GCACTTGGCGAAATTCGTGTA 59.804 47.619 17.05 1.03 42.81 2.90
2435 3154 1.826487 GCGGTCCACCAAAGGTTGT 60.826 57.895 0.00 0.00 31.02 3.32
2575 3294 0.957395 AATGCGCTTGAGGACTGGTG 60.957 55.000 9.73 0.00 0.00 4.17
2752 3473 4.680237 CCGTGCGTTGGAGCCAGA 62.680 66.667 0.00 0.00 36.02 3.86
2783 3504 2.033757 AGCTTGAGGTGCTGCCAG 59.966 61.111 0.00 0.00 39.56 4.85
3049 3774 4.873129 GCGGCGCCAGAGATCGAA 62.873 66.667 28.98 0.00 0.00 3.71
3198 3923 1.150081 GGCCCATGATCTCCAGGTG 59.850 63.158 0.00 0.00 0.00 4.00
3244 3969 1.306141 ACCGATCCTGGAGAGCCAA 60.306 57.895 1.52 0.00 45.41 4.52
3258 3983 4.687215 GCAGCAGTCCAGCACCGA 62.687 66.667 0.00 0.00 36.85 4.69
3309 4034 0.459489 GATCGCAGAAGAGGCAGAGT 59.541 55.000 0.00 0.00 43.58 3.24
3332 4057 0.179034 GTGCTCCATGGACTCCATCC 60.179 60.000 11.44 0.00 43.15 3.51
3441 4167 1.376466 CCACCAGTCCAGGAACCAG 59.624 63.158 0.00 0.00 0.00 4.00
3484 4210 2.032681 GCCTTTCCTGTGAGCCGT 59.967 61.111 0.00 0.00 0.00 5.68
3586 4312 1.091771 ATGTCGTGGCATAGCTGTGC 61.092 55.000 25.75 25.75 44.31 4.57
4056 4783 7.739022 CAAAGCTTGCGTATCATTCATTAAA 57.261 32.000 0.00 0.00 0.00 1.52
4096 4823 3.060602 CGAGGTCTTTGTCTCAACCTTC 58.939 50.000 0.00 0.00 42.15 3.46
4116 4843 4.953814 CGTCTAAAAATAGGTAAAAGCGCG 59.046 41.667 0.00 0.00 0.00 6.86
4223 5119 7.883311 TCTTCCAATGAAAGGTAAAGTAGAAGG 59.117 37.037 0.00 0.00 0.00 3.46
4276 5173 8.919661 GCTGGATCAACAAGAAAGAAAATTAAG 58.080 33.333 0.00 0.00 0.00 1.85
4680 5683 8.908786 TCAGAGACAAATACTGAACTTTCAAT 57.091 30.769 0.00 0.00 37.66 2.57
4872 7884 9.581289 TTGTGGAAATTAGAAAGGTTATCAGAA 57.419 29.630 0.00 0.00 0.00 3.02
5047 8245 8.324163 ACAAAACCAACAATAGAGATACTGAC 57.676 34.615 0.00 0.00 0.00 3.51
5286 8507 8.760980 ATAGCATGCCACCTATAAAAGTAAAA 57.239 30.769 15.66 0.00 0.00 1.52
5287 8508 8.629158 CAATAGCATGCCACCTATAAAAGTAAA 58.371 33.333 15.66 0.00 0.00 2.01
5288 8509 7.230510 CCAATAGCATGCCACCTATAAAAGTAA 59.769 37.037 15.66 0.00 0.00 2.24
5289 8510 6.714810 CCAATAGCATGCCACCTATAAAAGTA 59.285 38.462 15.66 0.00 0.00 2.24
5290 8511 5.536161 CCAATAGCATGCCACCTATAAAAGT 59.464 40.000 15.66 0.00 0.00 2.66
5291 8512 5.769662 TCCAATAGCATGCCACCTATAAAAG 59.230 40.000 15.66 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.