Multiple sequence alignment - TraesCS2D01G337100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G337100 chr2D 100.000 5157 0 0 1 5157 430465820 430460664 0.000000e+00 9524.0
1 TraesCS2D01G337100 chr2B 91.139 1896 95 32 722 2560 508251437 508249558 0.000000e+00 2503.0
2 TraesCS2D01G337100 chr2B 93.314 1017 37 18 3353 4342 508248478 508247466 0.000000e+00 1472.0
3 TraesCS2D01G337100 chr2B 97.143 700 18 2 2598 3297 508249559 508248862 0.000000e+00 1181.0
4 TraesCS2D01G337100 chr2B 85.571 499 42 15 1 495 508365589 508365117 3.590000e-136 496.0
5 TraesCS2D01G337100 chr2B 94.495 218 12 0 4363 4580 508247400 508247183 2.300000e-88 337.0
6 TraesCS2D01G337100 chr2A 95.261 1245 31 10 3415 4633 555823574 555824816 0.000000e+00 1947.0
7 TraesCS2D01G337100 chr2A 90.565 1505 85 17 988 2468 555821217 555822688 0.000000e+00 1940.0
8 TraesCS2D01G337100 chr2A 95.402 870 35 2 2494 3359 555822685 555823553 0.000000e+00 1380.0
9 TraesCS2D01G337100 chr2A 92.710 974 38 13 1 964 555820279 555821229 0.000000e+00 1375.0
10 TraesCS2D01G337100 chr2A 89.109 303 16 6 4667 4955 555824821 555825120 1.370000e-95 361.0
11 TraesCS2D01G337100 chr2A 90.863 197 8 4 4964 5150 555825219 555825415 6.630000e-64 255.0
12 TraesCS2D01G337100 chr6A 86.729 535 64 7 1072 1603 379662667 379662137 5.750000e-164 588.0
13 TraesCS2D01G337100 chr6A 85.252 278 41 0 3508 3785 379658370 379658093 2.350000e-73 287.0
14 TraesCS2D01G337100 chr6D 86.704 534 64 7 1073 1603 266959527 266958998 2.070000e-163 586.0
15 TraesCS2D01G337100 chr6D 84.892 278 42 0 3508 3785 266955808 266955531 1.090000e-71 281.0
16 TraesCS2D01G337100 chr6B 86.517 534 65 7 1073 1603 415040799 415040270 9.630000e-162 580.0
17 TraesCS2D01G337100 chr6B 84.892 278 42 0 3508 3785 415036951 415036674 1.090000e-71 281.0
18 TraesCS2D01G337100 chr5D 92.657 286 16 4 1 286 481667872 481667592 1.730000e-109 407.0
19 TraesCS2D01G337100 chr1B 84.659 352 49 2 1115 1465 634782719 634783066 3.820000e-91 346.0
20 TraesCS2D01G337100 chr1B 81.754 422 51 16 1 415 634782168 634782570 3.850000e-86 329.0
21 TraesCS2D01G337100 chr1B 84.979 233 35 0 1233 1465 634998319 634998551 2.400000e-58 237.0
22 TraesCS2D01G337100 chr1D 79.024 410 48 17 11 415 461765452 461765828 3.990000e-61 246.0
23 TraesCS2D01G337100 chr1D 86.344 227 30 1 1239 1465 461785071 461785296 3.990000e-61 246.0
24 TraesCS2D01G337100 chr1A 88.205 195 20 3 1 192 553053218 553053412 4.020000e-56 230.0
25 TraesCS2D01G337100 chr1A 80.443 271 35 10 259 525 552982549 552982805 1.900000e-44 191.0
26 TraesCS2D01G337100 chr1A 79.195 298 37 13 230 523 553061036 553061312 3.170000e-42 183.0
27 TraesCS2D01G337100 chr1A 90.476 63 6 0 1394 1456 553066383 553066445 3.310000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G337100 chr2D 430460664 430465820 5156 True 9524.000000 9524 100.000000 1 5157 1 chr2D.!!$R1 5156
1 TraesCS2D01G337100 chr2B 508247183 508251437 4254 True 1373.250000 2503 94.022750 722 4580 4 chr2B.!!$R2 3858
2 TraesCS2D01G337100 chr2A 555820279 555825415 5136 False 1209.666667 1947 92.318333 1 5150 6 chr2A.!!$F1 5149
3 TraesCS2D01G337100 chr6A 379658093 379662667 4574 True 437.500000 588 85.990500 1072 3785 2 chr6A.!!$R1 2713
4 TraesCS2D01G337100 chr6D 266955531 266959527 3996 True 433.500000 586 85.798000 1073 3785 2 chr6D.!!$R1 2712
5 TraesCS2D01G337100 chr6B 415036674 415040799 4125 True 430.500000 580 85.704500 1073 3785 2 chr6B.!!$R1 2712
6 TraesCS2D01G337100 chr1B 634782168 634783066 898 False 337.500000 346 83.206500 1 1465 2 chr1B.!!$F2 1464

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 435 0.179134 GGAGCTGTACGTGGTGCTAG 60.179 60.000 0.0 0.0 35.76 3.42 F
971 992 0.250513 CCTCCCTCTTTCGGTCTTGG 59.749 60.000 0.0 0.0 0.00 3.61 F
972 993 1.267121 CTCCCTCTTTCGGTCTTGGA 58.733 55.000 0.0 0.0 0.00 3.53 F
973 994 1.623811 CTCCCTCTTTCGGTCTTGGAA 59.376 52.381 0.0 0.0 0.00 3.53 F
2580 4007 0.240945 CACCGAAAATGTGCCCTGTC 59.759 55.000 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2039 1.135199 CAACATTGTGAGGCATCAGGC 60.135 52.381 0.00 0.00 43.74 4.85 R
1967 2040 2.439409 TCAACATTGTGAGGCATCAGG 58.561 47.619 0.00 0.00 35.66 3.86 R
2571 3039 2.472695 TGTGAACATAGACAGGGCAC 57.527 50.000 0.00 0.00 0.00 5.01 R
3035 5438 4.745649 ACTTAATAGGAGCACGTGAGAAC 58.254 43.478 22.23 5.77 0.00 3.01 R
4636 8094 0.179065 GGATACCCCGTGCTACCAAC 60.179 60.000 0.00 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 2.097825 CTCCTCTTTTTGGCTGGATGG 58.902 52.381 0.00 0.00 0.00 3.51
191 197 4.562394 CAGTGTCGCATGTTTGTTCTTTTT 59.438 37.500 0.00 0.00 0.00 1.94
192 198 4.562394 AGTGTCGCATGTTTGTTCTTTTTG 59.438 37.500 0.00 0.00 0.00 2.44
193 199 3.862267 TGTCGCATGTTTGTTCTTTTTGG 59.138 39.130 0.00 0.00 0.00 3.28
252 261 8.853469 CTAGGATAGTACTAACTTTGAAACCG 57.147 38.462 6.70 0.00 37.15 4.44
253 262 6.104665 AGGATAGTACTAACTTTGAAACCGC 58.895 40.000 6.70 0.00 37.15 5.68
254 263 5.005107 GGATAGTACTAACTTTGAAACCGCG 59.995 44.000 6.70 0.00 37.15 6.46
255 264 3.062042 AGTACTAACTTTGAAACCGCGG 58.938 45.455 26.86 26.86 29.00 6.46
256 265 2.243602 ACTAACTTTGAAACCGCGGA 57.756 45.000 35.90 6.02 0.00 5.54
308 317 1.936436 GCATCATTTCGCCACTGCCA 61.936 55.000 0.00 0.00 0.00 4.92
319 328 0.749454 CCACTGCCACTTGGATAGCC 60.749 60.000 0.00 0.00 37.39 3.93
327 336 1.331756 CACTTGGATAGCCGAATGCAC 59.668 52.381 0.00 0.00 44.83 4.57
367 376 3.751175 CGGTTAAGCAGATTCAAGTCCAA 59.249 43.478 5.38 0.00 0.00 3.53
372 381 7.370383 GTTAAGCAGATTCAAGTCCAATTTGA 58.630 34.615 0.00 0.00 33.00 2.69
373 382 6.600882 AAGCAGATTCAAGTCCAATTTGAT 57.399 33.333 0.00 0.00 34.76 2.57
417 426 4.818534 ATATGCAAAATGGAGCTGTACG 57.181 40.909 0.00 0.00 0.00 3.67
419 428 1.535028 TGCAAAATGGAGCTGTACGTG 59.465 47.619 0.00 0.00 0.00 4.49
420 429 1.135689 GCAAAATGGAGCTGTACGTGG 60.136 52.381 0.00 0.00 0.00 4.94
422 431 1.808411 AAATGGAGCTGTACGTGGTG 58.192 50.000 0.00 0.00 0.00 4.17
423 432 0.673644 AATGGAGCTGTACGTGGTGC 60.674 55.000 0.00 0.00 0.00 5.01
426 435 0.179134 GGAGCTGTACGTGGTGCTAG 60.179 60.000 0.00 0.00 35.76 3.42
436 445 0.323629 GTGGTGCTAGTTGGTGCCTA 59.676 55.000 0.00 0.00 0.00 3.93
445 454 0.609662 GTTGGTGCCTAGTTACCGGA 59.390 55.000 9.46 0.00 39.87 5.14
529 538 6.519679 TGTGAAATGCTCTGCTTGAATTAT 57.480 33.333 0.00 0.00 0.00 1.28
531 540 5.680229 GTGAAATGCTCTGCTTGAATTATCG 59.320 40.000 0.00 0.00 0.00 2.92
548 557 9.061435 TGAATTATCGATATACATGTGCCAAAA 57.939 29.630 9.11 0.00 0.00 2.44
549 558 9.546909 GAATTATCGATATACATGTGCCAAAAG 57.453 33.333 9.11 0.00 0.00 2.27
550 559 8.846943 ATTATCGATATACATGTGCCAAAAGA 57.153 30.769 9.11 0.00 0.00 2.52
555 564 7.011389 TCGATATACATGTGCCAAAAGAAAGAG 59.989 37.037 9.11 0.00 0.00 2.85
642 651 0.873312 GATCGCTCGCTTGCATGAGA 60.873 55.000 13.50 10.00 34.04 3.27
778 794 4.932146 ACCATTTTCTCAACCGAAAACAG 58.068 39.130 1.33 0.00 43.34 3.16
798 819 1.412710 GTATCCGTGCCTCCTTGATGA 59.587 52.381 0.00 0.00 0.00 2.92
827 848 2.029844 GCTTGCCAGAGACGTGTCC 61.030 63.158 9.40 0.00 0.00 4.02
861 882 0.446616 GGAGGCTTTAAAGGTTCGCG 59.553 55.000 16.78 0.00 0.00 5.87
868 889 3.486375 GCTTTAAAGGTTCGCGAATACCC 60.486 47.826 26.23 20.94 34.90 3.69
952 973 4.779733 TCCCTCTGCCCCGGTCTC 62.780 72.222 0.00 0.00 0.00 3.36
954 975 4.787280 CCTCTGCCCCGGTCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
955 976 3.151022 CTCTGCCCCGGTCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
956 977 4.779733 TCTGCCCCGGTCTCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
960 981 3.756783 CCCCGGTCTCCTCCCTCT 61.757 72.222 0.00 0.00 0.00 3.69
961 982 2.364961 CCCGGTCTCCTCCCTCTT 59.635 66.667 0.00 0.00 0.00 2.85
962 983 1.306226 CCCGGTCTCCTCCCTCTTT 60.306 63.158 0.00 0.00 0.00 2.52
963 984 1.331399 CCCGGTCTCCTCCCTCTTTC 61.331 65.000 0.00 0.00 0.00 2.62
964 985 1.668101 CCGGTCTCCTCCCTCTTTCG 61.668 65.000 0.00 0.00 0.00 3.46
965 986 1.668101 CGGTCTCCTCCCTCTTTCGG 61.668 65.000 0.00 0.00 0.00 4.30
966 987 0.615261 GGTCTCCTCCCTCTTTCGGT 60.615 60.000 0.00 0.00 0.00 4.69
967 988 0.818938 GTCTCCTCCCTCTTTCGGTC 59.181 60.000 0.00 0.00 0.00 4.79
968 989 0.705253 TCTCCTCCCTCTTTCGGTCT 59.295 55.000 0.00 0.00 0.00 3.85
969 990 1.077334 TCTCCTCCCTCTTTCGGTCTT 59.923 52.381 0.00 0.00 0.00 3.01
970 991 1.205893 CTCCTCCCTCTTTCGGTCTTG 59.794 57.143 0.00 0.00 0.00 3.02
971 992 0.250513 CCTCCCTCTTTCGGTCTTGG 59.749 60.000 0.00 0.00 0.00 3.61
972 993 1.267121 CTCCCTCTTTCGGTCTTGGA 58.733 55.000 0.00 0.00 0.00 3.53
973 994 1.623811 CTCCCTCTTTCGGTCTTGGAA 59.376 52.381 0.00 0.00 0.00 3.53
974 995 2.237392 CTCCCTCTTTCGGTCTTGGAAT 59.763 50.000 0.00 0.00 0.00 3.01
975 996 2.236395 TCCCTCTTTCGGTCTTGGAATC 59.764 50.000 0.00 0.00 0.00 2.52
976 997 2.633488 CCTCTTTCGGTCTTGGAATCC 58.367 52.381 0.00 0.00 0.00 3.01
977 998 2.237392 CCTCTTTCGGTCTTGGAATCCT 59.763 50.000 0.00 0.00 0.00 3.24
978 999 3.307762 CCTCTTTCGGTCTTGGAATCCTT 60.308 47.826 0.00 0.00 0.00 3.36
979 1000 3.935828 CTCTTTCGGTCTTGGAATCCTTC 59.064 47.826 0.00 0.00 0.00 3.46
1795 1853 4.067896 CAAAGTTGCCACTGTCAGAGTAT 58.932 43.478 6.91 0.00 31.73 2.12
1796 1854 5.237815 CAAAGTTGCCACTGTCAGAGTATA 58.762 41.667 6.91 0.00 31.73 1.47
1797 1855 5.683876 AAGTTGCCACTGTCAGAGTATAT 57.316 39.130 6.91 0.00 31.73 0.86
1798 1856 6.791867 AAGTTGCCACTGTCAGAGTATATA 57.208 37.500 6.91 0.00 31.73 0.86
1799 1857 6.985653 AGTTGCCACTGTCAGAGTATATAT 57.014 37.500 6.91 0.00 31.73 0.86
1854 1912 6.912082 TGTCAGTTGGTTATCAATCACAATG 58.088 36.000 0.00 0.00 37.73 2.82
1936 2009 4.582701 TGGAAATGTACTGTTTGCTTGG 57.417 40.909 13.64 0.00 0.00 3.61
1959 2032 7.672240 TGGTAGTTTATATGATCATTGCGGTA 58.328 34.615 14.65 0.00 0.00 4.02
1964 2037 9.283768 AGTTTATATGATCATTGCGGTAATTCA 57.716 29.630 14.65 0.00 0.00 2.57
1967 2040 4.227512 TGATCATTGCGGTAATTCATGC 57.772 40.909 0.00 0.00 0.00 4.06
1968 2041 3.004629 TGATCATTGCGGTAATTCATGCC 59.995 43.478 0.00 0.00 0.00 4.40
1969 2042 2.653726 TCATTGCGGTAATTCATGCCT 58.346 42.857 0.00 0.00 0.00 4.75
1970 2043 2.358582 TCATTGCGGTAATTCATGCCTG 59.641 45.455 0.00 0.00 0.00 4.85
1979 2052 1.688772 ATTCATGCCTGATGCCTCAC 58.311 50.000 0.00 0.00 40.16 3.51
1998 2071 2.730928 CACAATGTTGAAATTGCGGGTC 59.269 45.455 0.00 0.00 40.54 4.46
1999 2072 2.363680 ACAATGTTGAAATTGCGGGTCA 59.636 40.909 0.00 0.00 40.54 4.02
2081 2198 5.126222 TGTGCTTTGATTGTCCAAACTTGTA 59.874 36.000 0.00 0.00 33.07 2.41
2087 2204 7.867305 TTGATTGTCCAAACTTGTAGTGTAA 57.133 32.000 0.00 0.00 0.00 2.41
2207 2649 7.200455 AGTAATTTCCTTGTTTTCCTCGTTTG 58.800 34.615 0.00 0.00 0.00 2.93
2257 2706 6.825213 ACATTATGCATTAGCTCTTGACTTGA 59.175 34.615 3.54 0.00 42.74 3.02
2259 2708 4.277515 TGCATTAGCTCTTGACTTGACT 57.722 40.909 0.00 0.00 42.74 3.41
2281 2730 7.765360 TGACTTCAAAACTCATTGCTGAATTTT 59.235 29.630 0.00 0.00 40.42 1.82
2283 2732 6.752335 TCAAAACTCATTGCTGAATTTTCG 57.248 33.333 0.00 0.00 38.40 3.46
2396 2864 4.976864 TGGTATCATGGATTCTGGATGTG 58.023 43.478 0.00 0.00 0.00 3.21
2420 2888 7.004086 TGTTTATCCCAGGAAATAATAGCCAG 58.996 38.462 0.00 0.00 0.00 4.85
2466 2934 3.056821 CAGATGGGTGAACTTGACGTCTA 60.057 47.826 17.92 8.49 0.00 2.59
2477 2945 7.431668 GTGAACTTGACGTCTATTGACCTATAC 59.568 40.741 17.92 0.00 39.94 1.47
2571 3039 7.553881 AATAGACCAAGATACACCGAAAATG 57.446 36.000 0.00 0.00 0.00 2.32
2580 4007 0.240945 CACCGAAAATGTGCCCTGTC 59.759 55.000 0.00 0.00 0.00 3.51
3043 5446 5.902681 TCTAATTATCCTGGTGTTCTCACG 58.097 41.667 0.00 0.00 44.68 4.35
3081 5484 1.094785 CATTCCTTGGGGTTACTGCG 58.905 55.000 0.00 0.00 0.00 5.18
3123 5786 9.753674 ATCTTTCCATTCTTTTGATAGGTTACA 57.246 29.630 0.00 0.00 0.00 2.41
3307 5970 5.646793 GGTTAACACTTCCTTCCTGGTATTC 59.353 44.000 8.10 0.00 37.07 1.75
3313 5976 6.003950 CACTTCCTTCCTGGTATTCTTGAAA 58.996 40.000 0.00 0.00 37.07 2.69
3319 5982 7.014230 TCCTTCCTGGTATTCTTGAAAACTTTG 59.986 37.037 0.00 0.00 37.07 2.77
3376 6375 3.435327 TGTAGTCGCACATGATTTTGACC 59.565 43.478 0.00 0.00 0.00 4.02
3397 6396 3.433598 CCCTCATCCGCTCTTTTGGAATA 60.434 47.826 0.00 0.00 37.90 1.75
3504 6902 8.236585 TGAGGTTTATATTGATCCATTTGTGG 57.763 34.615 0.00 0.00 0.00 4.17
3703 7101 0.955428 TGAAGCGGGTCATTGCAGAC 60.955 55.000 0.00 0.00 37.80 3.51
3715 7113 4.988065 GCAGACGGCAAGTACAGA 57.012 55.556 0.00 0.00 43.97 3.41
3803 7201 1.502163 GATACCTGATGCACGCCTGC 61.502 60.000 0.19 0.19 44.52 4.85
3983 7381 0.543749 GTTGCAGAGGGGATAGCTGT 59.456 55.000 0.00 0.00 32.39 4.40
4042 7440 6.727824 ATTCTCAGTTCTTATTCGTGGTTG 57.272 37.500 0.00 0.00 0.00 3.77
4065 7464 1.138266 ACTCCCATGTAACCGGAATCG 59.862 52.381 9.46 0.00 0.00 3.34
4512 7970 7.919313 TGTAGTTATATTAGCGGTCTTTTCG 57.081 36.000 0.00 0.00 0.00 3.46
4540 7998 8.070034 TGTAGAACTCGGGAATAACTAAATCA 57.930 34.615 0.00 0.00 0.00 2.57
4553 8011 5.852282 AACTAAATCAAAACACACCAGCT 57.148 34.783 0.00 0.00 0.00 4.24
4575 8033 1.544724 TCCATGCCCTTTAGTTGTGC 58.455 50.000 0.00 0.00 0.00 4.57
4599 8057 7.013750 TGCCACACTATTCAATTTTGTCACTAA 59.986 33.333 0.00 0.00 0.00 2.24
4633 8091 2.712057 ACTCGACACCGTTATCGTTT 57.288 45.000 2.68 0.00 39.38 3.60
4634 8092 2.589014 ACTCGACACCGTTATCGTTTC 58.411 47.619 2.68 0.00 39.38 2.78
4641 8099 1.431496 CCGTTATCGTTTCGGTTGGT 58.569 50.000 0.00 0.00 39.51 3.67
4642 8100 2.605030 CCGTTATCGTTTCGGTTGGTA 58.395 47.619 0.00 0.00 39.51 3.25
4643 8101 2.599973 CCGTTATCGTTTCGGTTGGTAG 59.400 50.000 0.00 0.00 39.51 3.18
4644 8102 2.028404 CGTTATCGTTTCGGTTGGTAGC 59.972 50.000 0.00 0.00 0.00 3.58
4645 8103 2.995258 GTTATCGTTTCGGTTGGTAGCA 59.005 45.455 0.00 0.00 0.00 3.49
4646 8104 1.435577 ATCGTTTCGGTTGGTAGCAC 58.564 50.000 0.00 0.00 0.00 4.40
4647 8105 0.940519 TCGTTTCGGTTGGTAGCACG 60.941 55.000 0.00 0.00 0.00 5.34
4648 8106 1.864176 GTTTCGGTTGGTAGCACGG 59.136 57.895 0.00 0.00 0.00 4.94
4649 8107 1.301874 TTTCGGTTGGTAGCACGGG 60.302 57.895 0.00 0.00 0.00 5.28
4650 8108 2.734948 TTTCGGTTGGTAGCACGGGG 62.735 60.000 0.00 0.00 0.00 5.73
4651 8109 4.011517 CGGTTGGTAGCACGGGGT 62.012 66.667 0.00 0.00 0.00 4.95
4652 8110 2.648143 CGGTTGGTAGCACGGGGTA 61.648 63.158 0.00 0.00 0.00 3.69
4653 8111 1.909975 GGTTGGTAGCACGGGGTAT 59.090 57.895 0.00 0.00 0.00 2.73
4654 8112 0.179065 GGTTGGTAGCACGGGGTATC 60.179 60.000 0.00 0.00 0.00 2.24
4655 8113 0.179065 GTTGGTAGCACGGGGTATCC 60.179 60.000 4.39 6.62 0.00 2.59
4656 8114 0.325860 TTGGTAGCACGGGGTATCCT 60.326 55.000 4.39 0.00 0.00 3.24
4657 8115 1.046472 TGGTAGCACGGGGTATCCTG 61.046 60.000 4.39 0.00 45.02 3.86
4658 8116 1.069258 GTAGCACGGGGTATCCTGC 59.931 63.158 0.00 0.00 43.29 4.85
4659 8117 1.075525 TAGCACGGGGTATCCTGCT 60.076 57.895 12.96 12.96 45.38 4.24
4660 8118 1.399744 TAGCACGGGGTATCCTGCTG 61.400 60.000 17.01 8.62 44.18 4.41
4661 8119 2.203070 CACGGGGTATCCTGCTGC 60.203 66.667 0.00 0.00 43.29 5.25
4662 8120 2.687200 ACGGGGTATCCTGCTGCA 60.687 61.111 0.00 0.88 43.29 4.41
4663 8121 2.203070 CGGGGTATCCTGCTGCAC 60.203 66.667 0.00 0.00 31.78 4.57
4664 8122 2.193248 GGGGTATCCTGCTGCACC 59.807 66.667 0.00 0.00 0.00 5.01
4665 8123 2.203070 GGGTATCCTGCTGCACCG 60.203 66.667 0.00 0.00 31.47 4.94
4682 8140 1.978617 CGGTTCAGGGGCAAGCATT 60.979 57.895 0.00 0.00 0.00 3.56
4700 8158 2.717639 TTCCCAGCTCTTTATCCTGC 57.282 50.000 0.00 0.00 0.00 4.85
4712 8179 6.216801 TCTTTATCCTGCAACGTAGTATGT 57.783 37.500 0.00 0.00 45.00 2.29
4741 8208 0.478072 ACCAGCACAGGTGAAATCCA 59.522 50.000 3.10 0.00 41.30 3.41
4742 8209 1.133513 ACCAGCACAGGTGAAATCCAA 60.134 47.619 3.10 0.00 41.30 3.53
4836 8303 2.500098 TGTACATTCACTCCCTGTAGCC 59.500 50.000 0.00 0.00 0.00 3.93
4857 8325 2.956987 GCACGCCATCAAGTTGCT 59.043 55.556 0.00 0.00 0.00 3.91
4858 8326 1.443194 GCACGCCATCAAGTTGCTG 60.443 57.895 0.00 0.00 0.00 4.41
4865 8333 2.873245 GCCATCAAGTTGCTGAGAGTCA 60.873 50.000 8.27 0.00 0.00 3.41
4886 8354 5.406780 GTCACAGTTTATGGTCTGAGTCTTG 59.593 44.000 0.00 0.00 35.84 3.02
4887 8355 5.304357 TCACAGTTTATGGTCTGAGTCTTGA 59.696 40.000 0.00 0.00 35.84 3.02
4888 8356 5.991606 CACAGTTTATGGTCTGAGTCTTGAA 59.008 40.000 0.00 0.00 35.84 2.69
4889 8357 6.652481 CACAGTTTATGGTCTGAGTCTTGAAT 59.348 38.462 0.00 0.00 35.84 2.57
4891 8359 8.375506 ACAGTTTATGGTCTGAGTCTTGAATTA 58.624 33.333 0.00 0.00 35.84 1.40
4892 8360 9.219603 CAGTTTATGGTCTGAGTCTTGAATTAA 57.780 33.333 0.00 0.00 34.02 1.40
4893 8361 9.220767 AGTTTATGGTCTGAGTCTTGAATTAAC 57.779 33.333 0.00 0.00 0.00 2.01
4936 8408 3.305199 GCTGGATGCTTGAATTGATAGGC 60.305 47.826 0.00 0.00 38.95 3.93
4938 8410 3.141398 GGATGCTTGAATTGATAGGCGA 58.859 45.455 0.00 0.00 0.00 5.54
4943 8415 4.458989 TGCTTGAATTGATAGGCGAAACTT 59.541 37.500 0.00 0.00 0.00 2.66
4955 8427 5.523438 AGGCGAAACTTTTGGTTAATGAA 57.477 34.783 0.00 0.00 37.12 2.57
4956 8428 5.528870 AGGCGAAACTTTTGGTTAATGAAG 58.471 37.500 0.00 0.00 37.12 3.02
4957 8429 4.684242 GGCGAAACTTTTGGTTAATGAAGG 59.316 41.667 0.00 0.00 37.12 3.46
4958 8430 5.286438 GCGAAACTTTTGGTTAATGAAGGT 58.714 37.500 0.00 0.00 37.12 3.50
4959 8431 5.751509 GCGAAACTTTTGGTTAATGAAGGTT 59.248 36.000 0.00 0.00 37.12 3.50
4961 8433 6.975772 CGAAACTTTTGGTTAATGAAGGTTCA 59.024 34.615 11.75 0.00 42.88 3.18
4962 8434 7.489757 CGAAACTTTTGGTTAATGAAGGTTCAA 59.510 33.333 11.75 0.00 42.88 2.69
4989 8551 1.299976 CCTCCCTTGGCACCAGTAC 59.700 63.158 0.00 0.00 0.00 2.73
5010 8572 7.064016 CAGTACAGAAGAATAAACTCTCTTGGC 59.936 40.741 0.00 0.00 32.01 4.52
5017 8579 7.444703 AGAATAAACTCTCTTGGCTATTCCT 57.555 36.000 0.00 0.00 35.26 3.36
5039 8601 1.552792 TCACAGGAATGCACGGTCATA 59.447 47.619 0.00 0.00 0.00 2.15
5056 8618 4.816925 GGTCATATACCTTGGCACTCTTTC 59.183 45.833 0.00 0.00 45.75 2.62
5057 8619 5.428253 GTCATATACCTTGGCACTCTTTCA 58.572 41.667 0.00 0.00 0.00 2.69
5061 8633 1.580845 CCTTGGCACTCTTTCAGCGG 61.581 60.000 0.00 0.00 0.00 5.52
5075 8647 3.059287 AGCGGGACTGAAGAGAGTT 57.941 52.632 0.00 0.00 0.00 3.01
5138 8710 7.886629 ACTTTGATTTACATCCTGCACATAT 57.113 32.000 0.00 0.00 0.00 1.78
5151 8723 1.854126 GCACATATCATGCAAAACCGC 59.146 47.619 0.00 0.00 42.88 5.68
5153 8725 3.509740 CACATATCATGCAAAACCGCAA 58.490 40.909 0.00 0.00 46.87 4.85
5154 8726 4.114073 CACATATCATGCAAAACCGCAAT 58.886 39.130 0.00 0.00 46.87 3.56
5155 8727 5.280164 CACATATCATGCAAAACCGCAATA 58.720 37.500 0.00 0.00 46.87 1.90
5156 8728 5.747675 CACATATCATGCAAAACCGCAATAA 59.252 36.000 0.00 0.00 46.87 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 178 4.026886 GTCCAAAAAGAACAAACATGCGAC 60.027 41.667 0.00 0.00 0.00 5.19
191 197 2.044793 ACCCCTGAATCTTCTGTCCA 57.955 50.000 0.00 0.00 0.00 4.02
192 198 2.305927 TGAACCCCTGAATCTTCTGTCC 59.694 50.000 0.00 0.00 0.00 4.02
193 199 3.703001 TGAACCCCTGAATCTTCTGTC 57.297 47.619 0.00 0.00 0.00 3.51
236 245 3.383620 TCCGCGGTTTCAAAGTTAGTA 57.616 42.857 27.15 0.00 0.00 1.82
237 246 2.243602 TCCGCGGTTTCAAAGTTAGT 57.756 45.000 27.15 0.00 0.00 2.24
238 247 3.000727 AGATCCGCGGTTTCAAAGTTAG 58.999 45.455 27.15 0.00 0.00 2.34
308 317 1.210478 AGTGCATTCGGCTATCCAAGT 59.790 47.619 0.00 0.00 45.15 3.16
367 376 8.015185 AGCATACTAGAATGGCAAAATCAAAT 57.985 30.769 0.00 0.00 0.00 2.32
417 426 0.323629 TAGGCACCAACTAGCACCAC 59.676 55.000 0.00 0.00 0.00 4.16
419 428 0.613777 ACTAGGCACCAACTAGCACC 59.386 55.000 0.00 0.00 41.22 5.01
420 429 2.474410 AACTAGGCACCAACTAGCAC 57.526 50.000 0.00 0.00 41.22 4.40
422 431 2.737679 CGGTAACTAGGCACCAACTAGC 60.738 54.545 13.62 0.00 41.22 3.42
423 432 2.159142 CCGGTAACTAGGCACCAACTAG 60.159 54.545 13.62 0.00 42.77 2.57
426 435 0.609662 TCCGGTAACTAGGCACCAAC 59.390 55.000 13.62 0.00 34.25 3.77
436 445 0.179145 CGAACGCTGATCCGGTAACT 60.179 55.000 0.00 0.00 0.00 2.24
445 454 2.202623 GGCTCGACGAACGCTGAT 60.203 61.111 8.72 0.00 42.26 2.90
529 538 6.821160 TCTTTCTTTTGGCACATGTATATCGA 59.179 34.615 0.00 0.00 39.30 3.59
531 540 8.213518 TCTCTTTCTTTTGGCACATGTATATC 57.786 34.615 0.00 0.00 39.30 1.63
594 603 6.687081 AACGTACATCAGGTTTCTCAAAAA 57.313 33.333 0.00 0.00 31.22 1.94
642 651 0.322546 GGAACTTGGAACCCAGCGAT 60.323 55.000 0.00 0.00 33.81 4.58
778 794 1.412710 TCATCAAGGAGGCACGGATAC 59.587 52.381 0.00 0.00 0.00 2.24
827 848 0.179062 CCTCCTCCGCAAGAATGAGG 60.179 60.000 0.00 0.00 46.90 3.86
861 882 4.159693 GTCCTTGGAATTGTTGGGGTATTC 59.840 45.833 0.00 0.00 0.00 1.75
868 889 1.904287 TCGGTCCTTGGAATTGTTGG 58.096 50.000 0.00 0.00 0.00 3.77
952 973 0.250513 CCAAGACCGAAAGAGGGAGG 59.749 60.000 0.00 0.00 35.02 4.30
953 974 1.267121 TCCAAGACCGAAAGAGGGAG 58.733 55.000 0.00 0.00 35.02 4.30
954 975 1.724545 TTCCAAGACCGAAAGAGGGA 58.275 50.000 0.00 0.00 35.02 4.20
955 976 2.633488 GATTCCAAGACCGAAAGAGGG 58.367 52.381 0.00 0.00 35.02 4.30
956 977 2.237392 AGGATTCCAAGACCGAAAGAGG 59.763 50.000 5.29 0.00 37.30 3.69
957 978 3.618690 AGGATTCCAAGACCGAAAGAG 57.381 47.619 5.29 0.00 0.00 2.85
958 979 3.939066 GAAGGATTCCAAGACCGAAAGA 58.061 45.455 5.29 0.00 39.83 2.52
971 992 1.429930 GAGGGAGGGAGGAAGGATTC 58.570 60.000 0.00 0.00 46.67 2.52
972 993 0.029577 GGAGGGAGGGAGGAAGGATT 60.030 60.000 0.00 0.00 0.00 3.01
973 994 1.635051 GGAGGGAGGGAGGAAGGAT 59.365 63.158 0.00 0.00 0.00 3.24
974 995 2.647949 GGGAGGGAGGGAGGAAGGA 61.648 68.421 0.00 0.00 0.00 3.36
975 996 2.040359 GGGAGGGAGGGAGGAAGG 60.040 72.222 0.00 0.00 0.00 3.46
976 997 1.074850 GAGGGAGGGAGGGAGGAAG 60.075 68.421 0.00 0.00 0.00 3.46
977 998 2.647949 GGAGGGAGGGAGGGAGGAA 61.648 68.421 0.00 0.00 0.00 3.36
978 999 3.036959 GGAGGGAGGGAGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
979 1000 2.201734 AAAGGAGGGAGGGAGGGAGG 62.202 65.000 0.00 0.00 0.00 4.30
980 1001 0.692756 GAAAGGAGGGAGGGAGGGAG 60.693 65.000 0.00 0.00 0.00 4.30
981 1002 1.396594 GAAAGGAGGGAGGGAGGGA 59.603 63.158 0.00 0.00 0.00 4.20
982 1003 1.694525 GGAAAGGAGGGAGGGAGGG 60.695 68.421 0.00 0.00 0.00 4.30
983 1004 2.066999 CGGAAAGGAGGGAGGGAGG 61.067 68.421 0.00 0.00 0.00 4.30
984 1005 2.066999 CCGGAAAGGAGGGAGGGAG 61.067 68.421 0.00 0.00 45.00 4.30
985 1006 2.040606 CCGGAAAGGAGGGAGGGA 59.959 66.667 0.00 0.00 45.00 4.20
1459 1517 3.345808 TTGGCGCAGTTGACGAGC 61.346 61.111 10.83 0.00 0.00 5.03
1854 1912 8.895932 AATTCAGATAACTCAATTTTACACGC 57.104 30.769 0.00 0.00 0.00 5.34
1966 2039 1.135199 CAACATTGTGAGGCATCAGGC 60.135 52.381 0.00 0.00 43.74 4.85
1967 2040 2.439409 TCAACATTGTGAGGCATCAGG 58.561 47.619 0.00 0.00 35.66 3.86
1968 2041 4.508461 TTTCAACATTGTGAGGCATCAG 57.492 40.909 0.00 0.00 35.66 2.90
1969 2042 5.231702 CAATTTCAACATTGTGAGGCATCA 58.768 37.500 0.00 0.00 30.60 3.07
1970 2043 4.092383 GCAATTTCAACATTGTGAGGCATC 59.908 41.667 0.00 0.00 36.63 3.91
1979 2052 3.023946 TGACCCGCAATTTCAACATTG 57.976 42.857 0.00 0.00 37.23 2.82
1998 2071 6.351711 TCAGACTGAGGATTTACATGGATTG 58.648 40.000 0.00 0.00 0.00 2.67
1999 2072 6.566079 TCAGACTGAGGATTTACATGGATT 57.434 37.500 0.00 0.00 0.00 3.01
2081 2198 6.929606 CACTAGAAAACCAGCTAAGTTACACT 59.070 38.462 0.00 5.19 0.00 3.55
2087 2204 8.135382 TCTATTCACTAGAAAACCAGCTAAGT 57.865 34.615 0.00 0.00 37.29 2.24
2162 2604 5.086104 ACTCAAATACAGTCAATACCGCT 57.914 39.130 0.00 0.00 0.00 5.52
2231 2680 6.857777 AGTCAAGAGCTAATGCATAATGTC 57.142 37.500 0.00 0.00 42.74 3.06
2244 2693 5.189180 AGTTTTGAAGTCAAGTCAAGAGCT 58.811 37.500 0.00 0.00 36.41 4.09
2247 2696 7.475015 CAATGAGTTTTGAAGTCAAGTCAAGA 58.525 34.615 2.65 0.00 43.55 3.02
2257 2706 7.043192 CGAAAATTCAGCAATGAGTTTTGAAGT 60.043 33.333 13.86 0.00 37.68 3.01
2259 2708 6.977502 TCGAAAATTCAGCAATGAGTTTTGAA 59.022 30.769 13.86 0.00 37.68 2.69
2297 2746 3.525800 AAGGCCCACAGAGTTTTGTAT 57.474 42.857 0.00 0.00 0.00 2.29
2311 2760 5.291905 ACAGTGTATTCTACATAAGGCCC 57.708 43.478 0.00 0.00 41.34 5.80
2373 2841 5.001874 CACATCCAGAATCCATGATACCAG 58.998 45.833 0.00 0.00 0.00 4.00
2396 2864 7.004691 ACTGGCTATTATTTCCTGGGATAAAC 58.995 38.462 0.00 0.00 0.00 2.01
2466 2934 9.276590 CATACACACATGAATGTATAGGTCAAT 57.723 33.333 19.39 2.73 39.47 2.57
2477 2945 8.776470 TGTTGATATAGCATACACACATGAATG 58.224 33.333 0.00 0.00 0.00 2.67
2571 3039 2.472695 TGTGAACATAGACAGGGCAC 57.527 50.000 0.00 0.00 0.00 5.01
3035 5438 4.745649 ACTTAATAGGAGCACGTGAGAAC 58.254 43.478 22.23 5.77 0.00 3.01
3043 5446 7.054751 AGGAATGGTTTACTTAATAGGAGCAC 58.945 38.462 0.00 0.00 0.00 4.40
3123 5786 3.508402 CCAAATTGCCGTAAAGGTTAGGT 59.492 43.478 0.00 0.00 43.70 3.08
3260 5923 2.031682 GCATTTCTCGCAATCGCCTAAT 60.032 45.455 0.00 0.00 35.26 1.73
3307 5970 2.531522 CCCCCAGCAAAGTTTTCAAG 57.468 50.000 0.00 0.00 0.00 3.02
3327 5990 2.517450 GGCATGTCGCACTAGTCGC 61.517 63.158 0.00 0.00 45.17 5.19
3337 6000 1.795768 ACAACACACTAGGCATGTCG 58.204 50.000 0.00 0.00 0.00 4.35
3376 6375 2.113860 TTCCAAAAGAGCGGATGAGG 57.886 50.000 0.00 0.00 0.00 3.86
3504 6902 1.453155 CTGACCCACATTACCTGCAC 58.547 55.000 0.00 0.00 0.00 4.57
3628 7026 3.119245 ACTGCAAATGCCTCAACATCATC 60.119 43.478 2.46 0.00 41.18 2.92
3703 7101 2.489971 TCCTTTGTTCTGTACTTGCCG 58.510 47.619 0.00 0.00 0.00 5.69
3715 7113 1.678970 GCCGCCCAGATCCTTTGTT 60.679 57.895 0.00 0.00 0.00 2.83
3803 7201 5.064452 CAGTCCTCCAAAAGAATCGATTCTG 59.936 44.000 34.93 24.58 45.83 3.02
3983 7381 6.151312 TGCATGCCGTTTAAATTTAAGGTAGA 59.849 34.615 16.68 0.00 0.00 2.59
4042 7440 0.899720 TCCGGTTACATGGGAGTGAC 59.100 55.000 0.00 0.00 0.00 3.67
4065 7464 3.574396 CCTTTCCAAAGAAAAGAGGACCC 59.426 47.826 0.32 0.00 41.40 4.46
4512 7970 4.694339 AGTTATTCCCGAGTTCTACATGC 58.306 43.478 0.00 0.00 0.00 4.06
4540 7998 1.846007 TGGAACAGCTGGTGTGTTTT 58.154 45.000 19.93 0.18 40.26 2.43
4575 8033 9.743057 TTTTAGTGACAAAATTGAATAGTGTGG 57.257 29.630 0.00 0.00 0.00 4.17
4599 8057 5.064325 GGTGTCGAGTTGTAGTTGAAACTTT 59.936 40.000 0.21 0.00 40.37 2.66
4606 8064 2.129823 ACGGTGTCGAGTTGTAGTTG 57.870 50.000 0.00 0.00 40.11 3.16
4608 8066 3.425359 CGATAACGGTGTCGAGTTGTAGT 60.425 47.826 15.06 0.00 40.52 2.73
4613 8071 2.712057 AACGATAACGGTGTCGAGTT 57.288 45.000 26.78 8.15 40.52 3.01
4633 8091 3.697747 CCCCGTGCTACCAACCGA 61.698 66.667 0.00 0.00 0.00 4.69
4634 8092 1.963464 ATACCCCGTGCTACCAACCG 61.963 60.000 0.00 0.00 0.00 4.44
4636 8094 0.179065 GGATACCCCGTGCTACCAAC 60.179 60.000 0.00 0.00 0.00 3.77
4637 8095 0.325860 AGGATACCCCGTGCTACCAA 60.326 55.000 0.00 0.00 40.87 3.67
4638 8096 1.046472 CAGGATACCCCGTGCTACCA 61.046 60.000 0.00 0.00 40.87 3.25
4639 8097 1.746517 CAGGATACCCCGTGCTACC 59.253 63.158 0.00 0.00 40.87 3.18
4640 8098 1.069258 GCAGGATACCCCGTGCTAC 59.931 63.158 0.00 0.00 40.87 3.58
4641 8099 1.075525 AGCAGGATACCCCGTGCTA 60.076 57.895 9.00 0.00 43.10 3.49
4642 8100 2.365635 AGCAGGATACCCCGTGCT 60.366 61.111 5.41 5.41 41.43 4.40
4643 8101 2.203070 CAGCAGGATACCCCGTGC 60.203 66.667 0.00 0.00 40.87 5.34
4644 8102 2.203070 GCAGCAGGATACCCCGTG 60.203 66.667 0.00 0.00 40.87 4.94
4645 8103 2.687200 TGCAGCAGGATACCCCGT 60.687 61.111 0.00 0.00 40.87 5.28
4646 8104 2.203070 GTGCAGCAGGATACCCCG 60.203 66.667 0.00 0.00 40.87 5.73
4647 8105 2.193248 GGTGCAGCAGGATACCCC 59.807 66.667 11.86 0.00 37.17 4.95
4648 8106 2.203070 CGGTGCAGCAGGATACCC 60.203 66.667 17.33 0.00 37.17 3.69
4649 8107 2.203070 CCGGTGCAGCAGGATACC 60.203 66.667 17.33 0.00 34.10 2.73
4650 8108 1.078426 AACCGGTGCAGCAGGATAC 60.078 57.895 26.03 0.00 36.26 2.24
4651 8109 1.220749 GAACCGGTGCAGCAGGATA 59.779 57.895 26.03 0.00 36.26 2.59
4652 8110 2.045926 GAACCGGTGCAGCAGGAT 60.046 61.111 26.03 17.86 36.26 3.24
4653 8111 3.535629 CTGAACCGGTGCAGCAGGA 62.536 63.158 29.67 0.00 36.26 3.86
4654 8112 3.052082 CTGAACCGGTGCAGCAGG 61.052 66.667 29.67 19.05 38.47 4.85
4655 8113 3.052082 CCTGAACCGGTGCAGCAG 61.052 66.667 34.15 23.87 0.00 4.24
4656 8114 4.641645 CCCTGAACCGGTGCAGCA 62.642 66.667 34.15 16.76 0.00 4.41
4660 8118 4.966787 TTGCCCCTGAACCGGTGC 62.967 66.667 8.52 6.80 0.00 5.01
4661 8119 2.672996 CTTGCCCCTGAACCGGTG 60.673 66.667 8.52 0.00 0.00 4.94
4662 8120 4.660938 GCTTGCCCCTGAACCGGT 62.661 66.667 0.00 0.00 0.00 5.28
4663 8121 3.944250 ATGCTTGCCCCTGAACCGG 62.944 63.158 0.00 0.00 0.00 5.28
4664 8122 1.937546 GAATGCTTGCCCCTGAACCG 61.938 60.000 0.00 0.00 0.00 4.44
4665 8123 1.607801 GGAATGCTTGCCCCTGAACC 61.608 60.000 0.00 0.00 0.00 3.62
4682 8140 1.583556 TGCAGGATAAAGAGCTGGGA 58.416 50.000 0.00 0.00 0.00 4.37
4700 8158 3.056393 TCTGGTTGGGACATACTACGTTG 60.056 47.826 0.00 0.00 39.30 4.10
4712 8179 2.055689 CTGTGCTGGTCTGGTTGGGA 62.056 60.000 0.00 0.00 0.00 4.37
4799 8266 8.125448 GTGAATGTACATGAAGGAAATAAGAGC 58.875 37.037 9.63 0.00 0.00 4.09
4836 8303 0.095245 CAACTTGATGGCGTGCGTAG 59.905 55.000 0.00 0.00 0.00 3.51
4857 8325 4.832823 TCAGACCATAAACTGTGACTCTCA 59.167 41.667 0.00 0.00 35.84 3.27
4858 8326 5.047660 ACTCAGACCATAAACTGTGACTCTC 60.048 44.000 0.00 0.00 35.84 3.20
4865 8333 5.808366 TCAAGACTCAGACCATAAACTGT 57.192 39.130 0.00 0.00 35.84 3.55
4924 8396 5.242838 ACCAAAAGTTTCGCCTATCAATTCA 59.757 36.000 0.00 0.00 0.00 2.57
4936 8408 6.975772 TGAACCTTCATTAACCAAAAGTTTCG 59.024 34.615 0.00 0.00 34.44 3.46
4938 8410 9.108284 CATTGAACCTTCATTAACCAAAAGTTT 57.892 29.630 0.00 0.00 37.16 2.66
4943 8415 5.988561 GTGCATTGAACCTTCATTAACCAAA 59.011 36.000 0.00 0.00 37.00 3.28
4956 8428 2.092323 GGGAGGTTAGTGCATTGAACC 58.908 52.381 15.83 15.83 42.54 3.62
4957 8429 3.073274 AGGGAGGTTAGTGCATTGAAC 57.927 47.619 0.00 0.00 0.00 3.18
4958 8430 3.420893 CAAGGGAGGTTAGTGCATTGAA 58.579 45.455 0.00 0.00 31.95 2.69
4959 8431 2.290896 CCAAGGGAGGTTAGTGCATTGA 60.291 50.000 0.00 0.00 31.95 2.57
4961 8433 1.616994 GCCAAGGGAGGTTAGTGCATT 60.617 52.381 0.00 0.00 0.00 3.56
4962 8434 0.034089 GCCAAGGGAGGTTAGTGCAT 60.034 55.000 0.00 0.00 0.00 3.96
4989 8551 8.729805 AATAGCCAAGAGAGTTTATTCTTCTG 57.270 34.615 0.00 0.00 31.53 3.02
5017 8579 1.552792 TGACCGTGCATTCCTGTGATA 59.447 47.619 0.00 0.00 0.00 2.15
5039 8601 2.716217 GCTGAAAGAGTGCCAAGGTAT 58.284 47.619 0.00 0.00 34.07 2.73
5056 8618 0.605589 AACTCTCTTCAGTCCCGCTG 59.394 55.000 0.00 0.00 46.34 5.18
5057 8619 2.096248 CTAACTCTCTTCAGTCCCGCT 58.904 52.381 0.00 0.00 0.00 5.52
5061 8633 3.093057 TCAGGCTAACTCTCTTCAGTCC 58.907 50.000 0.00 0.00 0.00 3.85
5096 8668 1.832167 TTGGCTGGACTGTTTGGCC 60.832 57.895 0.00 0.00 46.75 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.