Multiple sequence alignment - TraesCS2D01G336400

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G336400 chr2D 100.000 7175 0 0 1 7175 429839957 429832783 0.000000e+00 13250.0
1 TraesCS2D01G336400 chr2D 96.025 629 12 1 1861 2489 31475077 31474462 0.000000e+00 1011.0
2 TraesCS2D01G336400 chr2D 85.181 938 113 14 4103 5037 429740565 429739651 0.000000e+00 939.0
3 TraesCS2D01G336400 chr2D 85.613 848 104 14 4197 5037 429691656 429690820 0.000000e+00 874.0
4 TraesCS2D01G336400 chr2D 85.242 847 109 12 4197 5037 430385158 430385994 0.000000e+00 857.0
5 TraesCS2D01G336400 chr2D 85.135 814 102 6 4226 5037 429925297 429924501 0.000000e+00 815.0
6 TraesCS2D01G336400 chr2D 98.015 403 8 0 1459 1861 31474466 31474868 0.000000e+00 701.0
7 TraesCS2D01G336400 chr2D 97.270 403 11 0 1459 1861 429837473 429837875 0.000000e+00 684.0
8 TraesCS2D01G336400 chr2D 81.185 574 65 25 5560 6129 429738849 429738315 8.610000e-114 422.0
9 TraesCS2D01G336400 chr2D 96.759 216 7 0 2486 2701 31474861 31475076 1.900000e-95 361.0
10 TraesCS2D01G336400 chr2D 89.324 281 27 1 5782 6059 429723296 429723016 4.120000e-92 350.0
11 TraesCS2D01G336400 chr2D 96.618 207 7 0 1862 2068 429837257 429837463 1.920000e-90 344.0
12 TraesCS2D01G336400 chr2D 75.974 770 116 40 5375 6126 429923948 429923230 4.150000e-87 333.0
13 TraesCS2D01G336400 chr2D 89.370 254 24 1 5782 6032 429733792 429733539 4.180000e-82 316.0
14 TraesCS2D01G336400 chr2D 92.453 53 4 0 5458 5510 430386604 430386656 7.720000e-10 76.8
15 TraesCS2D01G336400 chr2D 95.556 45 2 0 6660 6704 429833140 429833184 9.980000e-09 73.1
16 TraesCS2D01G336400 chr2D 97.619 42 1 0 6774 6815 429833254 429833295 9.980000e-09 73.1
17 TraesCS2D01G336400 chr2A 89.608 1809 105 42 5428 7175 557402162 557403948 0.000000e+00 2222.0
18 TraesCS2D01G336400 chr2A 87.687 1202 89 31 4198 5366 557400729 557401904 0.000000e+00 1345.0
19 TraesCS2D01G336400 chr2A 92.464 690 40 7 2702 3391 557399503 557400180 0.000000e+00 976.0
20 TraesCS2D01G336400 chr2A 85.697 846 105 12 4197 5036 556107980 556107145 0.000000e+00 878.0
21 TraesCS2D01G336400 chr2A 85.504 814 99 8 4226 5037 557059009 557059805 0.000000e+00 832.0
22 TraesCS2D01G336400 chr2A 84.652 847 114 12 4197 5037 558090934 558091770 0.000000e+00 830.0
23 TraesCS2D01G336400 chr2A 84.889 814 104 7 4226 5037 557319437 557320233 0.000000e+00 804.0
24 TraesCS2D01G336400 chr2A 86.860 449 23 12 765 1202 557398827 557399250 3.030000e-128 470.0
25 TraesCS2D01G336400 chr2A 90.361 249 20 3 3797 4045 557400489 557400733 2.500000e-84 324.0
26 TraesCS2D01G336400 chr2A 84.191 272 22 14 297 556 557398465 557398727 2.000000e-60 244.0
27 TraesCS2D01G336400 chr2A 80.919 283 44 8 5569 5848 558092619 558092894 1.570000e-51 215.0
28 TraesCS2D01G336400 chr2A 90.090 111 10 1 3401 3511 746624013 746623904 7.500000e-30 143.0
29 TraesCS2D01G336400 chr2A 93.548 93 6 0 2794 2886 556109752 556109660 9.710000e-29 139.0
30 TraesCS2D01G336400 chr2A 77.606 259 37 10 5605 5852 557060526 557060774 3.490000e-28 137.0
31 TraesCS2D01G336400 chr2A 76.569 239 37 14 5889 6126 557321199 557321419 5.880000e-21 113.0
32 TraesCS2D01G336400 chr2A 77.487 191 23 11 3591 3764 557400307 557400494 5.920000e-16 97.1
33 TraesCS2D01G336400 chr2A 96.364 55 2 0 1303 1357 557399309 557399363 2.760000e-14 91.6
34 TraesCS2D01G336400 chr2A 94.545 55 2 1 1365 1418 557399396 557399450 4.610000e-12 84.2
35 TraesCS2D01G336400 chr2A 100.000 42 0 0 6663 6704 557403572 557403531 2.150000e-10 78.7
36 TraesCS2D01G336400 chr2A 92.453 53 4 0 5458 5510 558092385 558092437 7.720000e-10 76.8
37 TraesCS2D01G336400 chr2B 92.724 1182 64 13 4198 5369 507410573 507409404 0.000000e+00 1687.0
38 TraesCS2D01G336400 chr2B 86.909 1543 135 38 4963 6464 507504770 507503254 0.000000e+00 1668.0
39 TraesCS2D01G336400 chr2B 93.459 688 34 6 4198 4885 507505464 507504788 0.000000e+00 1011.0
40 TraesCS2D01G336400 chr2B 84.322 944 128 12 4103 5037 506509369 506508437 0.000000e+00 905.0
41 TraesCS2D01G336400 chr2B 84.770 847 113 11 4197 5037 507193197 507192361 0.000000e+00 835.0
42 TraesCS2D01G336400 chr2B 82.853 729 71 37 761 1456 507412824 507412117 7.960000e-169 604.0
43 TraesCS2D01G336400 chr2B 82.000 600 65 20 1 566 507507955 507507365 3.030000e-128 470.0
44 TraesCS2D01G336400 chr2B 81.524 617 63 27 783 1353 507507327 507506716 1.820000e-125 460.0
45 TraesCS2D01G336400 chr2B 80.990 626 68 25 1 590 507416478 507415868 3.950000e-122 449.0
46 TraesCS2D01G336400 chr2B 90.842 273 21 2 5367 5636 507409366 507409095 5.290000e-96 363.0
47 TraesCS2D01G336400 chr2B 76.947 642 92 29 5413 6041 507754704 507754106 1.500000e-81 315.0
48 TraesCS2D01G336400 chr2B 86.926 283 24 6 5683 5953 507409093 507408812 9.040000e-79 305.0
49 TraesCS2D01G336400 chr2B 91.176 204 11 4 5949 6152 507408708 507408512 3.300000e-68 270.0
50 TraesCS2D01G336400 chr2B 91.146 192 14 2 3797 3988 507505662 507505474 2.570000e-64 257.0
51 TraesCS2D01G336400 chr2B 94.545 165 9 0 3797 3961 507411188 507411024 9.240000e-64 255.0
52 TraesCS2D01G336400 chr2B 82.095 296 44 6 6886 7175 416000665 416000373 2.000000e-60 244.0
53 TraesCS2D01G336400 chr2B 74.343 647 83 51 761 1353 507195958 507195341 1.580000e-46 198.0
54 TraesCS2D01G336400 chr2B 92.424 132 8 2 593 723 214000768 214000638 3.420000e-43 187.0
55 TraesCS2D01G336400 chr2B 83.333 186 21 9 2702 2886 507412122 507411946 5.760000e-36 163.0
56 TraesCS2D01G336400 chr2B 86.364 132 17 1 593 723 721296107 721296238 7.500000e-30 143.0
57 TraesCS2D01G336400 chr3D 95.680 625 14 1 1862 2486 17116975 17116364 0.000000e+00 992.0
58 TraesCS2D01G336400 chr3D 93.920 625 24 2 1862 2485 339180213 339180824 0.000000e+00 931.0
59 TraesCS2D01G336400 chr3D 97.022 403 12 0 1459 1861 17116365 17116767 0.000000e+00 678.0
60 TraesCS2D01G336400 chr3D 95.545 404 17 1 1459 1861 339180824 339180421 0.000000e+00 645.0
61 TraesCS2D01G336400 chr3D 97.222 216 6 0 2486 2701 17116760 17116975 4.090000e-97 366.0
62 TraesCS2D01G336400 chr3D 83.333 240 37 2 6922 7159 4873918 4874156 1.210000e-52 219.0
63 TraesCS2D01G336400 chr3D 89.542 153 14 2 7023 7175 600858002 600857852 7.350000e-45 193.0
64 TraesCS2D01G336400 chr3D 92.424 132 9 1 593 723 55168398 55168529 3.420000e-43 187.0
65 TraesCS2D01G336400 chr3D 88.816 152 15 2 7024 7175 157091949 157091800 1.230000e-42 185.0
66 TraesCS2D01G336400 chr3D 89.189 111 11 1 3401 3511 43996314 43996205 3.490000e-28 137.0
67 TraesCS2D01G336400 chr1D 95.192 624 16 2 1862 2485 326240684 326240075 0.000000e+00 974.0
68 TraesCS2D01G336400 chr1D 94.400 625 16 6 1862 2485 377015629 377015023 0.000000e+00 942.0
69 TraesCS2D01G336400 chr1D 96.107 411 15 1 1451 1861 326240067 326240476 0.000000e+00 669.0
70 TraesCS2D01G336400 chr1D 94.550 422 15 4 1442 1861 377015005 377015420 0.000000e+00 645.0
71 TraesCS2D01G336400 chr1D 97.285 221 5 1 2486 2705 377015413 377015633 2.440000e-99 374.0
72 TraesCS2D01G336400 chr1D 96.396 222 8 0 2486 2707 326240469 326240690 4.090000e-97 366.0
73 TraesCS2D01G336400 chr1D 85.034 147 21 1 7030 7175 315639443 315639297 1.610000e-31 148.0
74 TraesCS2D01G336400 chr1D 85.315 143 21 0 7031 7173 345404239 345404097 1.610000e-31 148.0
75 TraesCS2D01G336400 chr1D 87.288 118 13 2 3397 3513 392140974 392141090 4.520000e-27 134.0
76 TraesCS2D01G336400 chr1D 91.463 82 7 0 3401 3482 52572241 52572322 5.880000e-21 113.0
77 TraesCS2D01G336400 chr1D 84.906 106 6 4 619 723 479490533 479490437 1.650000e-16 99.0
78 TraesCS2D01G336400 chr1D 97.297 37 1 0 3401 3437 342833039 342833003 6.010000e-06 63.9
79 TraesCS2D01G336400 chr5A 94.712 624 16 3 1862 2485 225268336 225268942 0.000000e+00 953.0
80 TraesCS2D01G336400 chr5A 97.235 217 6 0 2486 2702 225268551 225268335 1.140000e-97 368.0
81 TraesCS2D01G336400 chr5A 87.889 289 30 3 6891 7175 567299732 567299445 1.150000e-87 335.0
82 TraesCS2D01G336400 chr5A 83.562 292 41 6 6887 7175 5675475 5675762 4.270000e-67 267.0
83 TraesCS2D01G336400 chr5A 82.534 292 44 6 6887 7175 5675064 5675351 4.300000e-62 250.0
84 TraesCS2D01G336400 chr5A 85.185 108 15 1 3401 3507 7183676 7183783 7.610000e-20 110.0
85 TraesCS2D01G336400 chr5A 86.301 73 8 2 6888 6958 570525059 570525131 2.150000e-10 78.7
86 TraesCS2D01G336400 chr1A 93.949 628 22 4 1858 2485 577586922 577587533 0.000000e+00 935.0
87 TraesCS2D01G336400 chr1A 95.533 403 16 2 1459 1861 577587533 577587133 1.690000e-180 643.0
88 TraesCS2D01G336400 chr1A 89.542 153 15 1 7023 7175 175176013 175175862 7.350000e-45 193.0
89 TraesCS2D01G336400 chr1A 82.870 216 31 6 6889 7101 307031605 307031817 9.500000e-44 189.0
90 TraesCS2D01G336400 chr1A 84.091 88 14 0 593 680 327180401 327180488 1.280000e-12 86.1
91 TraesCS2D01G336400 chr1A 79.464 112 21 2 3398 3507 558698993 558699104 2.150000e-10 78.7
92 TraesCS2D01G336400 chr5D 93.440 625 23 6 1862 2485 109532224 109531617 0.000000e+00 911.0
93 TraesCS2D01G336400 chr5D 91.667 312 13 1 1861 2172 300114409 300114111 3.100000e-113 420.0
94 TraesCS2D01G336400 chr5D 81.712 257 34 7 6922 7175 545143336 545143090 1.220000e-47 202.0
95 TraesCS2D01G336400 chr5D 88.889 144 16 0 7030 7173 9232243 9232100 2.060000e-40 178.0
96 TraesCS2D01G336400 chr5D 88.356 146 17 0 7030 7175 259178485 259178630 7.400000e-40 176.0
97 TraesCS2D01G336400 chr5D 85.321 109 15 1 3400 3507 254848671 254848563 2.120000e-20 111.0
98 TraesCS2D01G336400 chr5D 82.243 107 18 1 3400 3505 373206266 373206160 2.760000e-14 91.6
99 TraesCS2D01G336400 chr5D 90.698 43 4 0 6913 6955 552631907 552631865 2.800000e-04 58.4
100 TraesCS2D01G336400 chr6D 93.440 625 22 10 1861 2485 127668648 127669253 0.000000e+00 909.0
101 TraesCS2D01G336400 chr6D 96.305 406 14 1 1459 1864 127669253 127668849 0.000000e+00 665.0
102 TraesCS2D01G336400 chr6D 89.726 146 15 0 7030 7175 121815000 121814855 3.420000e-43 187.0
103 TraesCS2D01G336400 chr6D 86.620 142 19 0 7034 7175 24576300 24576159 2.680000e-34 158.0
104 TraesCS2D01G336400 chr6D 91.589 107 9 0 3401 3507 439917034 439917140 1.610000e-31 148.0
105 TraesCS2D01G336400 chr6D 94.681 94 5 0 3401 3494 425897471 425897378 5.800000e-31 147.0
106 TraesCS2D01G336400 chr6D 87.097 124 16 0 7052 7175 9200728 9200851 2.700000e-29 141.0
107 TraesCS2D01G336400 chr6D 85.135 74 10 1 6886 6958 190570362 190570435 2.780000e-09 75.0
108 TraesCS2D01G336400 chr3B 92.982 627 29 3 1859 2485 11945079 11944468 0.000000e+00 900.0
109 TraesCS2D01G336400 chr3B 95.545 404 17 1 1458 1861 11944467 11944869 0.000000e+00 645.0
110 TraesCS2D01G336400 chr3B 95.067 223 11 0 2486 2708 792634043 792633821 1.150000e-92 351.0
111 TraesCS2D01G336400 chr3B 91.667 132 10 1 593 723 90127468 90127337 1.590000e-41 182.0
112 TraesCS2D01G336400 chr7D 88.836 627 31 11 1859 2485 576636416 576637003 0.000000e+00 734.0
113 TraesCS2D01G336400 chr7D 95.475 221 10 0 2489 2709 576636631 576636411 3.180000e-93 353.0
114 TraesCS2D01G336400 chr7D 85.185 270 38 2 6908 7175 41749108 41748839 7.090000e-70 276.0
115 TraesCS2D01G336400 chr7D 92.593 135 9 1 590 723 30470987 30471121 7.350000e-45 193.0
116 TraesCS2D01G336400 chr4A 83.516 455 68 5 4103 4556 10461994 10462442 1.110000e-112 418.0
117 TraesCS2D01G336400 chr4A 82.942 469 75 2 4103 4571 10577893 10578356 1.110000e-112 418.0
118 TraesCS2D01G336400 chr4A 95.946 222 9 0 2486 2707 305476238 305476459 1.900000e-95 361.0
119 TraesCS2D01G336400 chr4A 80.042 481 81 12 4104 4579 10463205 10463675 6.890000e-90 342.0
120 TraesCS2D01G336400 chr4A 79.418 481 85 11 4103 4579 10572682 10573152 1.930000e-85 327.0
121 TraesCS2D01G336400 chr4A 85.268 224 29 1 4356 4579 10476697 10476916 2.010000e-55 228.0
122 TraesCS2D01G336400 chr4A 92.523 107 8 0 3401 3507 516936217 516936323 3.470000e-33 154.0
123 TraesCS2D01G336400 chr4A 84.722 144 13 7 4437 4579 10571808 10571943 1.260000e-27 135.0
124 TraesCS2D01G336400 chr4A 76.923 195 39 6 6889 7080 115279256 115279065 9.840000e-19 106.0
125 TraesCS2D01G336400 chr4D 81.076 502 75 16 4103 4597 458748781 458748293 4.060000e-102 383.0
126 TraesCS2D01G336400 chr4D 82.230 287 46 5 6886 7169 64403643 64403927 7.190000e-60 243.0
127 TraesCS2D01G336400 chr4D 86.301 146 20 0 7030 7175 469071669 469071524 7.450000e-35 159.0
128 TraesCS2D01G336400 chr4B 80.119 503 76 22 4103 4597 572947256 572946770 3.180000e-93 353.0
129 TraesCS2D01G336400 chr4B 92.793 111 8 0 3401 3511 414860852 414860742 2.070000e-35 161.0
130 TraesCS2D01G336400 chr4B 89.474 76 6 1 6915 6988 95316921 95316846 2.130000e-15 95.3
131 TraesCS2D01G336400 chr4B 81.481 108 18 2 3399 3505 654038538 654038432 3.570000e-13 87.9
132 TraesCS2D01G336400 chrUn 95.067 223 11 0 2486 2708 41793502 41793280 1.150000e-92 351.0
133 TraesCS2D01G336400 chrUn 89.726 146 15 0 7030 7175 55807435 55807290 3.420000e-43 187.0
134 TraesCS2D01G336400 chrUn 86.986 146 19 0 7030 7175 339257456 339257311 1.600000e-36 165.0
135 TraesCS2D01G336400 chrUn 97.368 38 0 1 3401 3438 137824277 137824241 6.010000e-06 63.9
136 TraesCS2D01G336400 chrUn 78.495 93 17 3 3401 3491 40878330 40878239 2.800000e-04 58.4
137 TraesCS2D01G336400 chrUn 78.495 93 17 3 3401 3491 310312378 310312469 2.800000e-04 58.4
138 TraesCS2D01G336400 chrUn 78.495 93 17 3 3401 3491 315278001 315277910 2.800000e-04 58.4
139 TraesCS2D01G336400 chr6B 83.462 260 34 6 6922 7175 564912501 564912245 4.330000e-57 233.0
140 TraesCS2D01G336400 chr6B 92.523 107 8 0 3401 3507 640973341 640973235 3.470000e-33 154.0
141 TraesCS2D01G336400 chr5B 81.923 260 41 6 6915 7169 90827981 90828239 1.570000e-51 215.0
142 TraesCS2D01G336400 chr5B 91.667 108 9 0 3401 3508 617823369 617823476 4.480000e-32 150.0
143 TraesCS2D01G336400 chr1B 80.645 279 50 4 6899 7175 32015852 32016128 5.640000e-51 213.0
144 TraesCS2D01G336400 chr7A 94.615 130 6 1 595 723 13781291 13781162 4.390000e-47 200.0
145 TraesCS2D01G336400 chr7A 92.424 132 9 1 593 723 578977012 578977143 3.420000e-43 187.0
146 TraesCS2D01G336400 chr7A 91.589 107 9 0 3401 3507 35772594 35772700 1.610000e-31 148.0
147 TraesCS2D01G336400 chr7A 88.095 126 10 5 3394 3517 681922391 681922269 2.090000e-30 145.0
148 TraesCS2D01G336400 chr6A 94.400 125 7 0 593 717 14162518 14162642 7.350000e-45 193.0
149 TraesCS2D01G336400 chr6A 79.545 264 49 5 6911 7172 549156489 549156749 4.420000e-42 183.0
150 TraesCS2D01G336400 chr6A 79.026 267 50 5 6911 7175 563195972 563196234 2.060000e-40 178.0
151 TraesCS2D01G336400 chr6A 88.356 146 17 0 7030 7175 263884835 263884690 7.400000e-40 176.0
152 TraesCS2D01G336400 chr6A 90.654 107 7 1 3401 3507 570377067 570376964 9.710000e-29 139.0
153 TraesCS2D01G336400 chr6A 85.185 108 15 1 3401 3507 53076410 53076303 7.610000e-20 110.0
154 TraesCS2D01G336400 chr6A 95.918 49 1 1 6911 6958 432253013 432253061 2.150000e-10 78.7
155 TraesCS2D01G336400 chr6A 88.235 51 3 3 6912 6960 326395604 326395653 2.800000e-04 58.4
156 TraesCS2D01G336400 chr3A 93.458 107 7 0 3401 3507 477332148 477332042 7.450000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G336400 chr2D 429832783 429839957 7174 True 13250.000000 13250 100.000000 1 7175 1 chr2D.!!$R5 7174
1 TraesCS2D01G336400 chr2D 31474462 31475077 615 True 1011.000000 1011 96.025000 1861 2489 1 chr2D.!!$R1 628
2 TraesCS2D01G336400 chr2D 429690820 429691656 836 True 874.000000 874 85.613000 4197 5037 1 chr2D.!!$R2 840
3 TraesCS2D01G336400 chr2D 429738315 429740565 2250 True 680.500000 939 83.183000 4103 6129 2 chr2D.!!$R6 2026
4 TraesCS2D01G336400 chr2D 429923230 429925297 2067 True 574.000000 815 80.554500 4226 6126 2 chr2D.!!$R7 1900
5 TraesCS2D01G336400 chr2D 31474466 31475076 610 False 531.000000 701 97.387000 1459 2701 2 chr2D.!!$F1 1242
6 TraesCS2D01G336400 chr2D 430385158 430386656 1498 False 466.900000 857 88.847500 4197 5510 2 chr2D.!!$F3 1313
7 TraesCS2D01G336400 chr2D 429833140 429837875 4735 False 293.550000 684 96.765750 1459 6815 4 chr2D.!!$F2 5356
8 TraesCS2D01G336400 chr2A 557398465 557403948 5483 False 650.433333 2222 88.840778 297 7175 9 chr2A.!!$F3 6878
9 TraesCS2D01G336400 chr2A 556107145 556109752 2607 True 508.500000 878 89.622500 2794 5036 2 chr2A.!!$R3 2242
10 TraesCS2D01G336400 chr2A 557059009 557060774 1765 False 484.500000 832 81.555000 4226 5852 2 chr2A.!!$F1 1626
11 TraesCS2D01G336400 chr2A 557319437 557321419 1982 False 458.500000 804 80.729000 4226 6126 2 chr2A.!!$F2 1900
12 TraesCS2D01G336400 chr2A 558090934 558092894 1960 False 373.933333 830 86.008000 4197 5848 3 chr2A.!!$F4 1651
13 TraesCS2D01G336400 chr2B 506508437 506509369 932 True 905.000000 905 84.322000 4103 5037 1 chr2B.!!$R3 934
14 TraesCS2D01G336400 chr2B 507503254 507507955 4701 True 773.200000 1668 87.007600 1 6464 5 chr2B.!!$R7 6463
15 TraesCS2D01G336400 chr2B 507192361 507195958 3597 True 516.500000 835 79.556500 761 5037 2 chr2B.!!$R5 4276
16 TraesCS2D01G336400 chr2B 507408512 507416478 7966 True 512.000000 1687 87.923625 1 6152 8 chr2B.!!$R6 6151
17 TraesCS2D01G336400 chr2B 507754106 507754704 598 True 315.000000 315 76.947000 5413 6041 1 chr2B.!!$R4 628
18 TraesCS2D01G336400 chr3D 17116364 17116975 611 True 992.000000 992 95.680000 1862 2486 1 chr3D.!!$R1 624
19 TraesCS2D01G336400 chr3D 339180213 339180824 611 False 931.000000 931 93.920000 1862 2485 1 chr3D.!!$F3 623
20 TraesCS2D01G336400 chr3D 17116365 17116975 610 False 522.000000 678 97.122000 1459 2701 2 chr3D.!!$F4 1242
21 TraesCS2D01G336400 chr1D 326240075 326240684 609 True 974.000000 974 95.192000 1862 2485 1 chr1D.!!$R2 623
22 TraesCS2D01G336400 chr1D 377015023 377015629 606 True 942.000000 942 94.400000 1862 2485 1 chr1D.!!$R5 623
23 TraesCS2D01G336400 chr1D 326240067 326240690 623 False 517.500000 669 96.251500 1451 2707 2 chr1D.!!$F3 1256
24 TraesCS2D01G336400 chr1D 377015005 377015633 628 False 509.500000 645 95.917500 1442 2705 2 chr1D.!!$F4 1263
25 TraesCS2D01G336400 chr5A 225268336 225268942 606 False 953.000000 953 94.712000 1862 2485 1 chr5A.!!$F2 623
26 TraesCS2D01G336400 chr5A 5675064 5675762 698 False 258.500000 267 83.048000 6887 7175 2 chr5A.!!$F4 288
27 TraesCS2D01G336400 chr1A 577586922 577587533 611 False 935.000000 935 93.949000 1858 2485 1 chr1A.!!$F4 627
28 TraesCS2D01G336400 chr5D 109531617 109532224 607 True 911.000000 911 93.440000 1862 2485 1 chr5D.!!$R2 623
29 TraesCS2D01G336400 chr6D 127668648 127669253 605 False 909.000000 909 93.440000 1861 2485 1 chr6D.!!$F2 624
30 TraesCS2D01G336400 chr3B 11944468 11945079 611 True 900.000000 900 92.982000 1859 2485 1 chr3B.!!$R1 626
31 TraesCS2D01G336400 chr7D 576636416 576637003 587 False 734.000000 734 88.836000 1859 2485 1 chr7D.!!$F2 626
32 TraesCS2D01G336400 chr4A 10461994 10463675 1681 False 380.000000 418 81.779000 4103 4579 2 chr4A.!!$F5 476
33 TraesCS2D01G336400 chr4A 10571808 10573152 1344 False 231.000000 327 82.070000 4103 4579 2 chr4A.!!$F6 476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 3738 0.250124 CCCGCATAGTCCCGCATAAA 60.250 55.000 0.00 0.00 0.00 1.40 F
1158 4387 0.104120 TCTCACGTTGTCTGGTGGTG 59.896 55.000 0.00 0.00 34.93 4.17 F
1279 4517 0.179084 ATCGGATGGCGATGACGTTT 60.179 50.000 0.00 0.00 41.98 3.60 F
2463 9842 0.319555 CCAACTCCAACTCGCTCGAA 60.320 55.000 0.00 0.00 0.00 3.71 F
3147 10822 0.956633 CACAAATGACAGCTGCAGGT 59.043 50.000 13.85 13.85 0.00 4.00 F
4047 12733 1.280133 CTCCCTCTGTTCCTGATTGCA 59.720 52.381 0.00 0.00 0.00 4.08 F
4140 13270 0.179145 AATACGCGACCCTCTGTTCG 60.179 55.000 15.93 0.00 0.00 3.95 F
6026 17361 0.183492 TGGAGCTTGCCAACTGAAGT 59.817 50.000 0.00 0.00 34.31 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2468 9847 0.811281 ATTTAGGGCTGCAAACGAGC 59.189 50.000 0.50 0.0 35.57 5.03 R
3037 10590 0.240945 CGACCCAACAGCACAAATCC 59.759 55.000 0.00 0.0 0.00 3.01 R
3082 10720 3.999663 CTGGAGGCTAAACTGAAAGAGTG 59.000 47.826 0.00 0.0 37.43 3.51 R
4101 12787 0.039798 CTTGCTGTGATGGTGTGTGC 60.040 55.000 0.00 0.0 0.00 4.57 R
4116 13246 0.179108 AGAGGGTCGCGTATTCTTGC 60.179 55.000 5.77 0.0 0.00 4.01 R
4956 15308 0.387202 CGAGTCTGCAGAGGGTATGG 59.613 60.000 18.89 0.0 0.00 2.74 R
6095 17433 0.539438 TGAAATTGGGAGCGGTGCTT 60.539 50.000 5.98 0.0 39.88 3.91 R
6910 18306 0.323725 ATTGATGCAAAGGCCGAGGT 60.324 50.000 0.00 0.0 40.13 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 3064 2.170817 AGAATAGCCCCTCTTCCGTTTC 59.829 50.000 0.00 0.00 0.00 2.78
53 3092 2.355756 CACCGATCCTGAAAATTCGCAT 59.644 45.455 0.00 0.00 0.00 4.73
57 3096 3.787634 CGATCCTGAAAATTCGCATGTTG 59.212 43.478 0.00 0.00 0.00 3.33
59 3098 2.557924 TCCTGAAAATTCGCATGTTGCT 59.442 40.909 0.00 0.00 42.25 3.91
61 3100 4.100529 CCTGAAAATTCGCATGTTGCTAG 58.899 43.478 0.00 0.00 42.25 3.42
69 3108 1.069432 CGCATGTTGCTAGCCATCATC 60.069 52.381 13.29 7.47 42.25 2.92
88 3127 7.228108 CCATCATCATGTACTGCTGAAAATAGT 59.772 37.037 0.00 0.00 33.93 2.12
100 3139 2.206223 GAAAATAGTCCCCACTCCCCT 58.794 52.381 0.00 0.00 33.62 4.79
104 3144 1.153695 TAGTCCCCACTCCCCTGTCT 61.154 60.000 0.00 0.00 33.62 3.41
114 3154 5.076873 CCACTCCCCTGTCTTAAAAATTCA 58.923 41.667 0.00 0.00 0.00 2.57
125 3165 7.998580 TGTCTTAAAAATTCAAACGTTACCCT 58.001 30.769 0.00 0.00 0.00 4.34
126 3166 8.468399 TGTCTTAAAAATTCAAACGTTACCCTT 58.532 29.630 0.00 0.00 0.00 3.95
127 3167 8.748582 GTCTTAAAAATTCAAACGTTACCCTTG 58.251 33.333 0.00 0.00 0.00 3.61
132 3173 1.161843 CAAACGTTACCCTTGGCGAT 58.838 50.000 0.00 0.00 0.00 4.58
196 3264 0.310543 TACGTGTAGCGACGGTTTGT 59.689 50.000 4.26 1.78 43.84 2.83
246 3314 5.416326 CGTCCATTTAAACATGGGTAAAGGA 59.584 40.000 13.46 12.86 43.74 3.36
251 3319 7.926018 CCATTTAAACATGGGTAAAGGATAAGC 59.074 37.037 13.46 0.00 40.29 3.09
267 3335 1.360393 AAGCCTTCCCTTCCCACACA 61.360 55.000 0.00 0.00 0.00 3.72
274 3342 1.376466 CCTTCCCACACACTCCCTG 59.624 63.158 0.00 0.00 0.00 4.45
284 3352 1.697432 CACACTCCCTGGGTCTACAAA 59.303 52.381 13.56 0.00 0.00 2.83
287 3355 2.637872 CACTCCCTGGGTCTACAAAAGA 59.362 50.000 13.56 0.00 0.00 2.52
288 3356 3.072476 CACTCCCTGGGTCTACAAAAGAA 59.928 47.826 13.56 0.00 35.47 2.52
289 3357 3.720002 ACTCCCTGGGTCTACAAAAGAAA 59.280 43.478 13.56 0.00 35.47 2.52
338 3406 6.222038 TGAAGGGAGTTGTACATCAGATAC 57.778 41.667 6.70 0.00 0.00 2.24
400 3471 5.832539 ATTTTCTGTTGAGAGGGAGAGAA 57.167 39.130 0.00 0.00 0.00 2.87
410 3481 4.263639 TGAGAGGGAGAGAATTGCACAAAT 60.264 41.667 0.00 0.00 0.00 2.32
433 3505 4.717991 TCTCGTTTTTATTTCATGGTGCG 58.282 39.130 0.00 0.00 0.00 5.34
448 3520 2.224670 TGGTGCGACTATTTTCCCTTGT 60.225 45.455 0.00 0.00 0.00 3.16
471 3543 4.657814 TGCCAGGAGATAAAACCTCTTT 57.342 40.909 0.00 0.00 33.91 2.52
474 3546 5.222130 TGCCAGGAGATAAAACCTCTTTTCT 60.222 40.000 0.00 0.00 33.91 2.52
475 3547 6.012858 TGCCAGGAGATAAAACCTCTTTTCTA 60.013 38.462 0.00 0.00 33.91 2.10
511 3583 1.263217 CAAAGTACCGAGCGCAAAAGT 59.737 47.619 11.47 3.64 0.00 2.66
523 3595 3.565482 AGCGCAAAAGTCATCTCAGAAAA 59.435 39.130 11.47 0.00 0.00 2.29
528 3601 7.301054 CGCAAAAGTCATCTCAGAAAATTACT 58.699 34.615 0.00 0.00 0.00 2.24
594 3704 4.559063 CCGAGGCTGCATCTGGGG 62.559 72.222 12.78 2.58 0.00 4.96
595 3705 3.473647 CGAGGCTGCATCTGGGGA 61.474 66.667 12.78 0.00 0.00 4.81
596 3706 2.815945 CGAGGCTGCATCTGGGGAT 61.816 63.158 12.78 0.00 0.00 3.85
603 3713 3.428797 CATCTGGGGATGCAAGCG 58.571 61.111 0.00 0.00 42.12 4.68
604 3714 1.153107 CATCTGGGGATGCAAGCGA 60.153 57.895 0.00 0.00 42.12 4.93
606 3716 2.955022 ATCTGGGGATGCAAGCGAGC 62.955 60.000 0.00 0.00 0.00 5.03
611 3721 3.567797 GATGCAAGCGAGCGTCCC 61.568 66.667 12.80 0.00 43.16 4.46
623 3733 4.944372 CGTCCCGCATAGTCCCGC 62.944 72.222 0.00 0.00 0.00 6.13
624 3734 3.845259 GTCCCGCATAGTCCCGCA 61.845 66.667 0.00 0.00 0.00 5.69
625 3735 2.842462 TCCCGCATAGTCCCGCAT 60.842 61.111 0.00 0.00 0.00 4.73
626 3736 1.532078 TCCCGCATAGTCCCGCATA 60.532 57.895 0.00 0.00 0.00 3.14
627 3737 1.116536 TCCCGCATAGTCCCGCATAA 61.117 55.000 0.00 0.00 0.00 1.90
628 3738 0.250124 CCCGCATAGTCCCGCATAAA 60.250 55.000 0.00 0.00 0.00 1.40
629 3739 1.610624 CCCGCATAGTCCCGCATAAAT 60.611 52.381 0.00 0.00 0.00 1.40
630 3740 2.354303 CCCGCATAGTCCCGCATAAATA 60.354 50.000 0.00 0.00 0.00 1.40
631 3741 2.930040 CCGCATAGTCCCGCATAAATAG 59.070 50.000 0.00 0.00 0.00 1.73
632 3742 3.368013 CCGCATAGTCCCGCATAAATAGA 60.368 47.826 0.00 0.00 0.00 1.98
633 3743 3.859961 CGCATAGTCCCGCATAAATAGAG 59.140 47.826 0.00 0.00 0.00 2.43
634 3744 4.184629 GCATAGTCCCGCATAAATAGAGG 58.815 47.826 0.00 0.00 0.00 3.69
635 3745 4.081642 GCATAGTCCCGCATAAATAGAGGA 60.082 45.833 0.00 0.00 0.00 3.71
636 3746 5.395768 GCATAGTCCCGCATAAATAGAGGAT 60.396 44.000 0.00 0.00 0.00 3.24
637 3747 6.644347 CATAGTCCCGCATAAATAGAGGATT 58.356 40.000 0.00 0.00 0.00 3.01
638 3748 7.632898 GCATAGTCCCGCATAAATAGAGGATTA 60.633 40.741 0.00 0.00 0.00 1.75
639 3749 6.287589 AGTCCCGCATAAATAGAGGATTAG 57.712 41.667 0.00 0.00 0.00 1.73
640 3750 5.780793 AGTCCCGCATAAATAGAGGATTAGT 59.219 40.000 0.00 0.00 0.00 2.24
641 3751 6.270231 AGTCCCGCATAAATAGAGGATTAGTT 59.730 38.462 0.00 0.00 0.00 2.24
642 3752 6.935208 GTCCCGCATAAATAGAGGATTAGTTT 59.065 38.462 0.00 0.00 0.00 2.66
643 3753 8.092687 GTCCCGCATAAATAGAGGATTAGTTTA 58.907 37.037 0.00 0.00 0.00 2.01
644 3754 8.653191 TCCCGCATAAATAGAGGATTAGTTTAA 58.347 33.333 0.00 0.00 0.00 1.52
645 3755 9.280174 CCCGCATAAATAGAGGATTAGTTTAAA 57.720 33.333 0.00 0.00 0.00 1.52
666 3776 8.807948 TTAAATTGAACTAAATCTGAGAGGGG 57.192 34.615 0.00 0.00 0.00 4.79
667 3777 6.394345 AATTGAACTAAATCTGAGAGGGGT 57.606 37.500 0.00 0.00 0.00 4.95
668 3778 7.510675 AATTGAACTAAATCTGAGAGGGGTA 57.489 36.000 0.00 0.00 0.00 3.69
669 3779 7.698163 ATTGAACTAAATCTGAGAGGGGTAT 57.302 36.000 0.00 0.00 0.00 2.73
670 3780 7.510675 TTGAACTAAATCTGAGAGGGGTATT 57.489 36.000 0.00 0.00 0.00 1.89
671 3781 7.510675 TGAACTAAATCTGAGAGGGGTATTT 57.489 36.000 0.00 0.00 0.00 1.40
672 3782 8.618240 TGAACTAAATCTGAGAGGGGTATTTA 57.382 34.615 0.00 0.00 0.00 1.40
673 3783 9.225682 TGAACTAAATCTGAGAGGGGTATTTAT 57.774 33.333 0.00 0.00 0.00 1.40
681 3791 8.488308 TCTGAGAGGGGTATTTATAACTAACC 57.512 38.462 8.14 8.14 0.00 2.85
682 3792 7.232127 TCTGAGAGGGGTATTTATAACTAACCG 59.768 40.741 10.01 0.00 0.00 4.44
683 3793 7.068702 TGAGAGGGGTATTTATAACTAACCGA 58.931 38.462 10.01 0.00 0.00 4.69
684 3794 7.564660 TGAGAGGGGTATTTATAACTAACCGAA 59.435 37.037 10.01 0.00 0.00 4.30
685 3795 8.322905 AGAGGGGTATTTATAACTAACCGAAA 57.677 34.615 10.01 0.00 0.00 3.46
686 3796 8.206867 AGAGGGGTATTTATAACTAACCGAAAC 58.793 37.037 10.01 3.32 0.00 2.78
687 3797 7.282585 AGGGGTATTTATAACTAACCGAAACC 58.717 38.462 10.01 3.97 0.00 3.27
688 3798 7.127801 AGGGGTATTTATAACTAACCGAAACCT 59.872 37.037 10.01 5.69 0.00 3.50
689 3799 8.428852 GGGGTATTTATAACTAACCGAAACCTA 58.571 37.037 10.01 0.00 0.00 3.08
696 3806 5.381174 AACTAACCGAAACCTATTTTGCC 57.619 39.130 0.00 0.00 0.00 4.52
697 3807 4.659115 ACTAACCGAAACCTATTTTGCCT 58.341 39.130 0.00 0.00 0.00 4.75
698 3808 5.807909 ACTAACCGAAACCTATTTTGCCTA 58.192 37.500 0.00 0.00 0.00 3.93
699 3809 5.645067 ACTAACCGAAACCTATTTTGCCTAC 59.355 40.000 0.00 0.00 0.00 3.18
700 3810 3.004862 ACCGAAACCTATTTTGCCTACG 58.995 45.455 0.00 0.00 0.00 3.51
701 3811 3.264104 CCGAAACCTATTTTGCCTACGA 58.736 45.455 0.00 0.00 0.00 3.43
702 3812 3.685756 CCGAAACCTATTTTGCCTACGAA 59.314 43.478 0.00 0.00 0.00 3.85
703 3813 4.201783 CCGAAACCTATTTTGCCTACGAAG 60.202 45.833 0.00 0.00 0.00 3.79
704 3814 4.659088 GAAACCTATTTTGCCTACGAAGC 58.341 43.478 0.00 0.00 0.00 3.86
705 3815 2.277084 ACCTATTTTGCCTACGAAGCG 58.723 47.619 0.00 0.00 0.00 4.68
706 3816 1.597663 CCTATTTTGCCTACGAAGCGG 59.402 52.381 0.00 0.00 0.00 5.52
707 3817 1.597663 CTATTTTGCCTACGAAGCGGG 59.402 52.381 0.00 0.00 0.00 6.13
708 3818 1.029947 ATTTTGCCTACGAAGCGGGG 61.030 55.000 0.00 0.00 0.00 5.73
709 3819 4.770874 TTGCCTACGAAGCGGGGC 62.771 66.667 15.37 15.37 44.81 5.80
713 3823 3.912907 CTACGAAGCGGGGCGGAT 61.913 66.667 0.00 0.00 0.00 4.18
714 3824 3.843117 CTACGAAGCGGGGCGGATC 62.843 68.421 0.00 0.00 0.00 3.36
729 3839 4.853142 ATCGGCTCCGCACCCCTA 62.853 66.667 2.96 0.00 39.59 3.53
732 3842 4.162690 GGCTCCGCACCCCTACTG 62.163 72.222 0.00 0.00 0.00 2.74
733 3843 4.840005 GCTCCGCACCCCTACTGC 62.840 72.222 0.00 0.00 0.00 4.40
734 3844 3.390521 CTCCGCACCCCTACTGCA 61.391 66.667 0.00 0.00 34.00 4.41
735 3845 3.665675 CTCCGCACCCCTACTGCAC 62.666 68.421 0.00 0.00 34.00 4.57
737 3847 4.373116 CGCACCCCTACTGCACGT 62.373 66.667 0.00 0.00 34.00 4.49
738 3848 2.434359 GCACCCCTACTGCACGTC 60.434 66.667 0.00 0.00 34.56 4.34
739 3849 2.943978 GCACCCCTACTGCACGTCT 61.944 63.158 0.00 0.00 34.56 4.18
740 3850 1.079819 CACCCCTACTGCACGTCTG 60.080 63.158 0.00 0.00 0.00 3.51
741 3851 2.125512 CCCCTACTGCACGTCTGC 60.126 66.667 0.00 0.00 44.52 4.26
927 4054 3.160585 CTCCCACCTCACTTGCCA 58.839 61.111 0.00 0.00 0.00 4.92
1004 4142 4.803426 CGCTCCACACTCCGCTCC 62.803 72.222 0.00 0.00 0.00 4.70
1147 4376 8.989653 TCCTTTTTGTTTTATTTTCTCACGTT 57.010 26.923 0.00 0.00 0.00 3.99
1158 4387 0.104120 TCTCACGTTGTCTGGTGGTG 59.896 55.000 0.00 0.00 34.93 4.17
1175 4413 1.383523 GTGTTATCTGCTTCTGGGGC 58.616 55.000 0.00 0.00 0.00 5.80
1223 4461 2.171079 GGGCGTCGCGATTGATCAA 61.171 57.895 14.06 11.26 0.00 2.57
1279 4517 0.179084 ATCGGATGGCGATGACGTTT 60.179 50.000 0.00 0.00 41.98 3.60
1280 4518 0.456628 TCGGATGGCGATGACGTTTA 59.543 50.000 0.00 0.00 41.98 2.01
1287 4525 0.850856 GCGATGACGTTTATCCGGAC 59.149 55.000 6.12 0.00 41.98 4.79
1397 4740 2.028567 CGAAGGAAGCAGAGGAGTTCTT 60.029 50.000 0.00 0.00 32.41 2.52
1450 4814 1.644786 CGGCCCGGCTTTACTCTTTG 61.645 60.000 9.86 0.00 0.00 2.77
1451 4815 0.608308 GGCCCGGCTTTACTCTTTGT 60.608 55.000 9.86 0.00 0.00 2.83
1452 4816 1.244816 GCCCGGCTTTACTCTTTGTT 58.755 50.000 0.71 0.00 0.00 2.83
1550 4914 3.321497 AGCTCAAACTAAGTGAAGCTCG 58.679 45.455 0.00 0.00 29.30 5.03
1574 4938 4.158579 TGATCGAGCTGTAGAACATGACTT 59.841 41.667 0.90 0.00 0.00 3.01
1749 7109 3.527533 GACCACGTGACATAATTAGGCA 58.472 45.455 19.30 0.00 0.00 4.75
1758 7118 9.120538 ACGTGACATAATTAGGCATAAATCTTT 57.879 29.630 0.00 0.00 0.00 2.52
2163 9516 7.273320 TCCATTTTGTTTACCAACGAACATA 57.727 32.000 0.00 0.00 36.21 2.29
2463 9842 0.319555 CCAACTCCAACTCGCTCGAA 60.320 55.000 0.00 0.00 0.00 3.71
2468 9847 1.801913 CCAACTCGCTCGAACTCGG 60.802 63.158 0.00 0.00 40.29 4.63
2631 10010 3.245519 AGCTTGTTTCTTTTCGAGTCGAC 59.754 43.478 16.28 7.70 34.89 4.20
2670 10050 1.941734 GAGTCAATCTCGAGCGGCG 60.942 63.158 7.81 0.51 42.69 6.46
2739 10119 1.006571 GTTTCGTGGTCGGCTGAGA 60.007 57.895 0.00 0.00 37.69 3.27
2785 10165 3.100671 CCACTAAGCAGAGAAGGGTAGT 58.899 50.000 0.00 0.00 0.00 2.73
2891 10296 1.131638 TCTGCTTGAGTTGGGAGTGT 58.868 50.000 0.00 0.00 0.00 3.55
2917 10420 4.728058 GCGGAGACTGATCTGCTC 57.272 61.111 12.43 12.43 46.19 4.26
2918 10421 1.299014 GCGGAGACTGATCTGCTCG 60.299 63.158 13.64 11.24 46.19 5.03
2919 10422 1.299014 CGGAGACTGATCTGCTCGC 60.299 63.158 13.64 7.30 41.02 5.03
2957 10460 5.880332 TCACAAAGCAGAGTAAAGAAGTGTT 59.120 36.000 0.00 0.00 0.00 3.32
2958 10461 6.037172 TCACAAAGCAGAGTAAAGAAGTGTTC 59.963 38.462 0.00 0.00 0.00 3.18
2968 10471 7.824779 AGAGTAAAGAAGTGTTCTGTTCTGTTT 59.175 33.333 0.00 0.00 40.59 2.83
2973 10476 4.859629 AGTGTTCTGTTCTGTTTCGTTC 57.140 40.909 0.00 0.00 0.00 3.95
3037 10590 1.069973 CAGAGCAGAGTAGAGATCGCG 60.070 57.143 0.00 0.00 0.00 5.87
3082 10720 1.225855 TGCATCACACCTCGTTTGAC 58.774 50.000 0.00 0.00 0.00 3.18
3147 10822 0.956633 CACAAATGACAGCTGCAGGT 59.043 50.000 13.85 13.85 0.00 4.00
3276 10999 5.047377 GGCTTTGGTTGTTAAGATCAATGGA 60.047 40.000 0.00 0.00 0.00 3.41
3324 11047 7.544217 GTCTCCTATTTCTTCTGAAACAGAGTC 59.456 40.741 0.00 0.00 43.90 3.36
3332 11062 4.963318 TCTGAAACAGAGTCCAGTGATT 57.037 40.909 0.00 0.00 35.39 2.57
3363 11093 6.664515 TGTCTTTGGCTTAATACGTTGAAAG 58.335 36.000 0.00 0.00 0.00 2.62
3391 11134 2.297033 TGCAAGGCAAAAGATCTGGAAC 59.703 45.455 0.00 0.00 34.76 3.62
3402 11145 9.508567 GCAAAAGATCTGGAACTAATCATTTAC 57.491 33.333 0.00 0.00 0.00 2.01
3405 11148 8.443953 AAGATCTGGAACTAATCATTTACTGC 57.556 34.615 0.00 0.00 0.00 4.40
3406 11149 6.995091 AGATCTGGAACTAATCATTTACTGCC 59.005 38.462 0.00 0.00 0.00 4.85
3407 11150 6.313519 TCTGGAACTAATCATTTACTGCCT 57.686 37.500 0.00 0.00 0.00 4.75
3408 11151 6.349300 TCTGGAACTAATCATTTACTGCCTC 58.651 40.000 0.00 0.00 0.00 4.70
3409 11152 6.156949 TCTGGAACTAATCATTTACTGCCTCT 59.843 38.462 0.00 0.00 0.00 3.69
3410 11153 6.115446 TGGAACTAATCATTTACTGCCTCTG 58.885 40.000 0.00 0.00 0.00 3.35
3411 11154 6.116126 GGAACTAATCATTTACTGCCTCTGT 58.884 40.000 0.00 0.00 0.00 3.41
3412 11155 6.599638 GGAACTAATCATTTACTGCCTCTGTT 59.400 38.462 0.00 0.00 0.00 3.16
3413 11156 7.201652 GGAACTAATCATTTACTGCCTCTGTTC 60.202 40.741 0.00 0.00 0.00 3.18
3414 11157 6.711277 ACTAATCATTTACTGCCTCTGTTCA 58.289 36.000 0.00 0.00 0.00 3.18
3415 11158 5.886960 AATCATTTACTGCCTCTGTTCAC 57.113 39.130 0.00 0.00 0.00 3.18
3416 11159 4.623932 TCATTTACTGCCTCTGTTCACT 57.376 40.909 0.00 0.00 0.00 3.41
3417 11160 4.973168 TCATTTACTGCCTCTGTTCACTT 58.027 39.130 0.00 0.00 0.00 3.16
3418 11161 5.376625 TCATTTACTGCCTCTGTTCACTTT 58.623 37.500 0.00 0.00 0.00 2.66
3419 11162 5.827797 TCATTTACTGCCTCTGTTCACTTTT 59.172 36.000 0.00 0.00 0.00 2.27
3420 11163 6.995686 TCATTTACTGCCTCTGTTCACTTTTA 59.004 34.615 0.00 0.00 0.00 1.52
3421 11164 7.665559 TCATTTACTGCCTCTGTTCACTTTTAT 59.334 33.333 0.00 0.00 0.00 1.40
3422 11165 8.946085 CATTTACTGCCTCTGTTCACTTTTATA 58.054 33.333 0.00 0.00 0.00 0.98
3423 11166 8.911918 TTTACTGCCTCTGTTCACTTTTATAA 57.088 30.769 0.00 0.00 0.00 0.98
3424 11167 8.547967 TTACTGCCTCTGTTCACTTTTATAAG 57.452 34.615 0.00 0.00 37.40 1.73
3425 11168 6.769512 ACTGCCTCTGTTCACTTTTATAAGA 58.230 36.000 0.00 0.00 35.30 2.10
3426 11169 6.651225 ACTGCCTCTGTTCACTTTTATAAGAC 59.349 38.462 0.00 0.00 35.30 3.01
3427 11170 5.637810 TGCCTCTGTTCACTTTTATAAGACG 59.362 40.000 0.00 0.00 35.30 4.18
3428 11171 5.638234 GCCTCTGTTCACTTTTATAAGACGT 59.362 40.000 0.00 0.00 35.30 4.34
3429 11172 6.147328 GCCTCTGTTCACTTTTATAAGACGTT 59.853 38.462 0.00 0.00 35.30 3.99
3430 11173 7.307811 GCCTCTGTTCACTTTTATAAGACGTTT 60.308 37.037 0.00 0.00 35.30 3.60
3431 11174 8.557029 CCTCTGTTCACTTTTATAAGACGTTTT 58.443 33.333 0.00 0.00 35.30 2.43
3439 11182 9.968743 CACTTTTATAAGACGTTTTAGACATCC 57.031 33.333 4.75 0.00 35.30 3.51
3440 11183 9.715121 ACTTTTATAAGACGTTTTAGACATCCA 57.285 29.630 4.75 0.00 35.30 3.41
3442 11185 9.932207 TTTTATAAGACGTTTTAGACATCCAGA 57.068 29.630 4.75 0.00 0.00 3.86
3443 11186 8.922058 TTATAAGACGTTTTAGACATCCAGAC 57.078 34.615 4.75 0.00 0.00 3.51
3444 11187 4.866508 AGACGTTTTAGACATCCAGACA 57.133 40.909 0.00 0.00 0.00 3.41
3445 11188 4.557205 AGACGTTTTAGACATCCAGACAC 58.443 43.478 0.00 0.00 0.00 3.67
3446 11189 4.281182 AGACGTTTTAGACATCCAGACACT 59.719 41.667 0.00 0.00 0.00 3.55
3447 11190 4.307432 ACGTTTTAGACATCCAGACACTG 58.693 43.478 0.00 0.00 0.00 3.66
3448 11191 4.202223 ACGTTTTAGACATCCAGACACTGT 60.202 41.667 0.00 0.00 0.00 3.55
3449 11192 4.386049 CGTTTTAGACATCCAGACACTGTC 59.614 45.833 0.38 0.38 39.63 3.51
3450 11193 4.537135 TTTAGACATCCAGACACTGTCC 57.463 45.455 5.51 0.00 40.08 4.02
3451 11194 2.015456 AGACATCCAGACACTGTCCA 57.985 50.000 5.51 0.00 40.08 4.02
3452 11195 2.329267 AGACATCCAGACACTGTCCAA 58.671 47.619 5.51 0.00 40.08 3.53
3453 11196 2.705658 AGACATCCAGACACTGTCCAAA 59.294 45.455 5.51 0.00 40.08 3.28
3454 11197 3.136443 AGACATCCAGACACTGTCCAAAA 59.864 43.478 5.51 0.00 40.08 2.44
3455 11198 3.214328 ACATCCAGACACTGTCCAAAAC 58.786 45.455 5.51 0.00 32.18 2.43
3456 11199 3.213506 CATCCAGACACTGTCCAAAACA 58.786 45.455 5.51 0.00 36.18 2.83
3469 11212 5.164954 TGTCCAAAACAGTACAAAACAAGC 58.835 37.500 0.00 0.00 32.81 4.01
3470 11213 5.164954 GTCCAAAACAGTACAAAACAAGCA 58.835 37.500 0.00 0.00 0.00 3.91
3471 11214 5.288472 GTCCAAAACAGTACAAAACAAGCAG 59.712 40.000 0.00 0.00 0.00 4.24
3472 11215 5.047660 TCCAAAACAGTACAAAACAAGCAGT 60.048 36.000 0.00 0.00 0.00 4.40
3473 11216 5.288472 CCAAAACAGTACAAAACAAGCAGTC 59.712 40.000 0.00 0.00 0.00 3.51
3474 11217 5.897377 AAACAGTACAAAACAAGCAGTCT 57.103 34.783 0.00 0.00 0.00 3.24
3475 11218 4.882671 ACAGTACAAAACAAGCAGTCTG 57.117 40.909 0.00 0.00 0.00 3.51
3476 11219 4.513442 ACAGTACAAAACAAGCAGTCTGA 58.487 39.130 3.32 0.00 0.00 3.27
3477 11220 4.941263 ACAGTACAAAACAAGCAGTCTGAA 59.059 37.500 3.32 0.00 0.00 3.02
3478 11221 5.414454 ACAGTACAAAACAAGCAGTCTGAAA 59.586 36.000 3.32 0.00 0.00 2.69
3479 11222 5.739161 CAGTACAAAACAAGCAGTCTGAAAC 59.261 40.000 3.32 0.00 0.00 2.78
3480 11223 3.758300 ACAAAACAAGCAGTCTGAAACG 58.242 40.909 3.32 0.00 0.00 3.60
3481 11224 3.190535 ACAAAACAAGCAGTCTGAAACGT 59.809 39.130 3.32 0.00 0.00 3.99
3482 11225 3.675467 AAACAAGCAGTCTGAAACGTC 57.325 42.857 3.32 0.00 0.00 4.34
3483 11226 2.604046 ACAAGCAGTCTGAAACGTCT 57.396 45.000 3.32 0.00 0.00 4.18
3484 11227 2.906354 ACAAGCAGTCTGAAACGTCTT 58.094 42.857 3.32 0.00 0.00 3.01
3485 11228 4.054780 ACAAGCAGTCTGAAACGTCTTA 57.945 40.909 3.32 0.00 0.00 2.10
3486 11229 4.632153 ACAAGCAGTCTGAAACGTCTTAT 58.368 39.130 3.32 0.00 0.00 1.73
3487 11230 5.779922 ACAAGCAGTCTGAAACGTCTTATA 58.220 37.500 3.32 0.00 0.00 0.98
3488 11231 6.220930 ACAAGCAGTCTGAAACGTCTTATAA 58.779 36.000 3.32 0.00 0.00 0.98
3489 11232 6.704493 ACAAGCAGTCTGAAACGTCTTATAAA 59.296 34.615 3.32 0.00 0.00 1.40
3490 11233 7.225931 ACAAGCAGTCTGAAACGTCTTATAAAA 59.774 33.333 3.32 0.00 0.00 1.52
3491 11234 7.724305 AGCAGTCTGAAACGTCTTATAAAAA 57.276 32.000 3.32 0.00 0.00 1.94
3492 11235 7.573627 AGCAGTCTGAAACGTCTTATAAAAAC 58.426 34.615 3.32 0.00 0.00 2.43
3493 11236 7.225931 AGCAGTCTGAAACGTCTTATAAAAACA 59.774 33.333 3.32 0.00 0.00 2.83
3494 11237 7.853929 GCAGTCTGAAACGTCTTATAAAAACAA 59.146 33.333 3.32 0.00 0.00 2.83
3495 11238 9.710979 CAGTCTGAAACGTCTTATAAAAACAAA 57.289 29.630 0.00 0.00 0.00 2.83
3502 11245 9.471084 AAACGTCTTATAAAAACAAATGAAGGG 57.529 29.630 0.00 0.00 0.00 3.95
3503 11246 8.398878 ACGTCTTATAAAAACAAATGAAGGGA 57.601 30.769 0.00 0.00 0.00 4.20
3504 11247 8.512138 ACGTCTTATAAAAACAAATGAAGGGAG 58.488 33.333 0.00 0.00 0.00 4.30
3505 11248 8.512138 CGTCTTATAAAAACAAATGAAGGGAGT 58.488 33.333 0.00 0.00 0.00 3.85
3516 11259 8.738645 ACAAATGAAGGGAGTATCTATCAAAC 57.261 34.615 0.00 0.00 33.73 2.93
3566 11321 4.106029 TCTTCACTCCTACGATTTTCCG 57.894 45.455 0.00 0.00 0.00 4.30
3589 11346 6.157211 CGGAGTTAGTGAACAGTGACTATTT 58.843 40.000 0.00 0.00 38.10 1.40
3618 12286 9.760926 AATAGCCTATGACTGAGATAGAATACA 57.239 33.333 0.00 0.00 0.00 2.29
3639 12307 9.579932 AATACACATAGATATCTCTGTCTGTGA 57.420 33.333 24.18 15.17 38.58 3.58
3673 12341 7.592903 GCTTCACATAATTCCATTTAGCTTAGC 59.407 37.037 0.00 0.00 0.00 3.09
3693 12361 7.201644 GCTTAGCTGCTACATTTGTGAATCTAA 60.202 37.037 9.27 0.00 0.00 2.10
3774 12460 5.525012 TGAATTTCTTATCTGTGAGGCATCG 59.475 40.000 0.00 0.00 0.00 3.84
3817 12503 6.112058 AGTTTATCTCACAGATTCTTCAGGC 58.888 40.000 0.00 0.00 36.20 4.85
3853 12539 2.223340 GCCAAGACAATTGCTACGATGG 60.223 50.000 5.05 9.11 0.00 3.51
3860 12546 5.234329 AGACAATTGCTACGATGGTAATTCG 59.766 40.000 5.05 0.00 42.20 3.34
3864 12550 2.049228 GCTACGATGGTAATTCGTCCG 58.951 52.381 1.59 0.00 46.13 4.79
3889 12575 3.677976 GCTTTGCCAGATTGAGGAATTGG 60.678 47.826 0.00 0.00 0.00 3.16
3900 12586 3.025978 TGAGGAATTGGTTGCATGGATC 58.974 45.455 0.00 0.00 0.00 3.36
3965 12651 6.655078 AAGTACCATTCACTCTTTGCATTT 57.345 33.333 0.00 0.00 0.00 2.32
3966 12652 7.759489 AAGTACCATTCACTCTTTGCATTTA 57.241 32.000 0.00 0.00 0.00 1.40
3973 12659 9.294030 CCATTCACTCTTTGCATTTATTACTTC 57.706 33.333 0.00 0.00 0.00 3.01
3989 12675 8.687292 TTATTACTTCTATGCTCGGTTCTCTA 57.313 34.615 0.00 0.00 0.00 2.43
3993 12679 5.761234 ACTTCTATGCTCGGTTCTCTAGTAG 59.239 44.000 0.00 0.00 0.00 2.57
3996 12682 6.120905 TCTATGCTCGGTTCTCTAGTAGTTT 58.879 40.000 0.00 0.00 0.00 2.66
3997 12683 5.662674 ATGCTCGGTTCTCTAGTAGTTTT 57.337 39.130 0.00 0.00 0.00 2.43
4002 12688 3.512724 CGGTTCTCTAGTAGTTTTCCCCA 59.487 47.826 0.00 0.00 0.00 4.96
4004 12690 5.511888 CGGTTCTCTAGTAGTTTTCCCCAAA 60.512 44.000 0.00 0.00 0.00 3.28
4006 12692 6.946583 GGTTCTCTAGTAGTTTTCCCCAAATT 59.053 38.462 0.00 0.00 0.00 1.82
4015 12701 8.593679 AGTAGTTTTCCCCAAATTAAAATCTGG 58.406 33.333 0.00 0.00 0.00 3.86
4016 12702 7.387265 AGTTTTCCCCAAATTAAAATCTGGT 57.613 32.000 0.00 0.00 0.00 4.00
4017 12703 8.499288 AGTTTTCCCCAAATTAAAATCTGGTA 57.501 30.769 0.00 0.00 0.00 3.25
4018 12704 8.372459 AGTTTTCCCCAAATTAAAATCTGGTAC 58.628 33.333 0.00 0.00 0.00 3.34
4019 12705 6.518208 TTCCCCAAATTAAAATCTGGTACG 57.482 37.500 0.00 0.00 0.00 3.67
4020 12706 5.572252 TCCCCAAATTAAAATCTGGTACGT 58.428 37.500 0.00 0.00 0.00 3.57
4021 12707 5.648960 TCCCCAAATTAAAATCTGGTACGTC 59.351 40.000 0.00 0.00 0.00 4.34
4022 12708 5.650703 CCCCAAATTAAAATCTGGTACGTCT 59.349 40.000 0.00 0.00 0.00 4.18
4023 12709 6.152154 CCCCAAATTAAAATCTGGTACGTCTT 59.848 38.462 0.00 0.00 0.00 3.01
4024 12710 7.027161 CCCAAATTAAAATCTGGTACGTCTTG 58.973 38.462 0.00 0.00 0.00 3.02
4025 12711 7.308951 CCCAAATTAAAATCTGGTACGTCTTGT 60.309 37.037 0.00 0.00 0.00 3.16
4026 12712 8.723311 CCAAATTAAAATCTGGTACGTCTTGTA 58.277 33.333 0.00 0.00 0.00 2.41
4036 12722 2.289592 ACGTCTTGTACTCCCTCTGT 57.710 50.000 0.00 0.00 0.00 3.41
4037 12723 2.595238 ACGTCTTGTACTCCCTCTGTT 58.405 47.619 0.00 0.00 0.00 3.16
4038 12724 2.557490 ACGTCTTGTACTCCCTCTGTTC 59.443 50.000 0.00 0.00 0.00 3.18
4039 12725 2.094649 CGTCTTGTACTCCCTCTGTTCC 60.095 54.545 0.00 0.00 0.00 3.62
4040 12726 3.166679 GTCTTGTACTCCCTCTGTTCCT 58.833 50.000 0.00 0.00 0.00 3.36
4041 12727 3.056465 GTCTTGTACTCCCTCTGTTCCTG 60.056 52.174 0.00 0.00 0.00 3.86
4042 12728 2.992847 TGTACTCCCTCTGTTCCTGA 57.007 50.000 0.00 0.00 0.00 3.86
4043 12729 3.474798 TGTACTCCCTCTGTTCCTGAT 57.525 47.619 0.00 0.00 0.00 2.90
4044 12730 3.791320 TGTACTCCCTCTGTTCCTGATT 58.209 45.455 0.00 0.00 0.00 2.57
4045 12731 3.515502 TGTACTCCCTCTGTTCCTGATTG 59.484 47.826 0.00 0.00 0.00 2.67
4046 12732 1.280421 ACTCCCTCTGTTCCTGATTGC 59.720 52.381 0.00 0.00 0.00 3.56
4047 12733 1.280133 CTCCCTCTGTTCCTGATTGCA 59.720 52.381 0.00 0.00 0.00 4.08
4048 12734 1.918262 TCCCTCTGTTCCTGATTGCAT 59.082 47.619 0.00 0.00 0.00 3.96
4049 12735 2.092753 TCCCTCTGTTCCTGATTGCATC 60.093 50.000 0.00 0.00 0.00 3.91
4050 12736 2.092538 CCCTCTGTTCCTGATTGCATCT 60.093 50.000 0.00 0.00 0.00 2.90
4051 12737 3.204526 CCTCTGTTCCTGATTGCATCTC 58.795 50.000 0.00 0.00 0.00 2.75
4052 12738 3.370209 CCTCTGTTCCTGATTGCATCTCA 60.370 47.826 0.00 0.00 0.00 3.27
4053 12739 4.452825 CTCTGTTCCTGATTGCATCTCAT 58.547 43.478 0.00 0.00 0.00 2.90
4054 12740 4.196971 TCTGTTCCTGATTGCATCTCATG 58.803 43.478 0.00 0.00 0.00 3.07
4055 12741 3.945921 CTGTTCCTGATTGCATCTCATGT 59.054 43.478 0.00 0.00 0.00 3.21
4056 12742 4.338012 TGTTCCTGATTGCATCTCATGTT 58.662 39.130 0.00 0.00 0.00 2.71
4057 12743 4.768448 TGTTCCTGATTGCATCTCATGTTT 59.232 37.500 0.00 0.00 0.00 2.83
4058 12744 5.244402 TGTTCCTGATTGCATCTCATGTTTT 59.756 36.000 0.00 0.00 0.00 2.43
4059 12745 5.571784 TCCTGATTGCATCTCATGTTTTC 57.428 39.130 0.00 0.00 0.00 2.29
4060 12746 5.011586 TCCTGATTGCATCTCATGTTTTCA 58.988 37.500 0.00 0.00 0.00 2.69
4061 12747 5.477637 TCCTGATTGCATCTCATGTTTTCAA 59.522 36.000 0.00 0.00 0.00 2.69
4062 12748 6.015265 TCCTGATTGCATCTCATGTTTTCAAA 60.015 34.615 0.00 0.00 0.00 2.69
4063 12749 6.647481 CCTGATTGCATCTCATGTTTTCAAAA 59.353 34.615 0.00 0.00 0.00 2.44
4064 12750 7.333423 CCTGATTGCATCTCATGTTTTCAAAAT 59.667 33.333 0.00 0.00 0.00 1.82
4065 12751 8.610248 TGATTGCATCTCATGTTTTCAAAATT 57.390 26.923 0.00 0.00 0.00 1.82
4066 12752 9.058174 TGATTGCATCTCATGTTTTCAAAATTT 57.942 25.926 0.00 0.00 0.00 1.82
4067 12753 9.325150 GATTGCATCTCATGTTTTCAAAATTTG 57.675 29.630 0.00 0.00 0.00 2.32
4068 12754 7.789273 TGCATCTCATGTTTTCAAAATTTGT 57.211 28.000 5.56 0.00 0.00 2.83
4069 12755 8.211116 TGCATCTCATGTTTTCAAAATTTGTT 57.789 26.923 5.56 0.00 0.00 2.83
4070 12756 8.336806 TGCATCTCATGTTTTCAAAATTTGTTC 58.663 29.630 5.56 0.00 0.00 3.18
4071 12757 7.799914 GCATCTCATGTTTTCAAAATTTGTTCC 59.200 33.333 5.56 0.00 0.00 3.62
4072 12758 8.828644 CATCTCATGTTTTCAAAATTTGTTCCA 58.171 29.630 5.56 0.06 0.00 3.53
4073 12759 8.783833 TCTCATGTTTTCAAAATTTGTTCCAA 57.216 26.923 5.56 0.00 0.00 3.53
4074 12760 9.224267 TCTCATGTTTTCAAAATTTGTTCCAAA 57.776 25.926 5.56 0.00 0.00 3.28
4091 12777 8.731275 TGTTCCAAATATATGTCAATTCGAGT 57.269 30.769 0.00 0.00 0.00 4.18
4092 12778 8.611757 TGTTCCAAATATATGTCAATTCGAGTG 58.388 33.333 0.00 0.00 0.00 3.51
4093 12779 8.826710 GTTCCAAATATATGTCAATTCGAGTGA 58.173 33.333 0.00 0.00 0.00 3.41
4094 12780 9.559732 TTCCAAATATATGTCAATTCGAGTGAT 57.440 29.630 4.41 0.00 0.00 3.06
4101 12787 8.809159 ATATGTCAATTCGAGTGATAACTCTG 57.191 34.615 8.64 0.10 34.74 3.35
4116 13246 1.154197 CTCTGCACACACCATCACAG 58.846 55.000 0.00 0.00 0.00 3.66
4126 13256 3.002791 ACACCATCACAGCAAGAATACG 58.997 45.455 0.00 0.00 0.00 3.06
4140 13270 0.179145 AATACGCGACCCTCTGTTCG 60.179 55.000 15.93 0.00 0.00 3.95
4172 13302 3.300009 CATCGTGGTCTTTTCTTTGTGC 58.700 45.455 0.00 0.00 0.00 4.57
4184 13314 3.011566 TCTTTGTGCCTTGGTTGAAGA 57.988 42.857 0.00 0.00 32.82 2.87
4193 13323 4.226761 GCCTTGGTTGAAGATGTAAAACG 58.773 43.478 0.00 0.00 32.82 3.60
4207 13337 7.472543 AGATGTAAAACGTTATGATTTCTGGC 58.527 34.615 0.00 0.00 0.00 4.85
4215 13345 4.576053 CGTTATGATTTCTGGCCATCTTGA 59.424 41.667 5.51 0.00 0.00 3.02
4329 13460 6.016276 TGCTTGAACATTTAGAAGGAAAGGTC 60.016 38.462 0.00 0.00 32.48 3.85
4330 13461 6.016276 GCTTGAACATTTAGAAGGAAAGGTCA 60.016 38.462 0.00 0.00 32.48 4.02
4445 13577 7.506938 CCCTGGTACATGATTCTTATTTTGGAT 59.493 37.037 0.00 0.00 38.20 3.41
4509 13644 3.288964 TGTAGAGTAAGTCCTGGCTAGC 58.711 50.000 6.04 6.04 0.00 3.42
4510 13645 2.838637 AGAGTAAGTCCTGGCTAGCT 57.161 50.000 15.72 0.00 0.00 3.32
4511 13646 3.955524 AGAGTAAGTCCTGGCTAGCTA 57.044 47.619 15.72 7.83 0.00 3.32
4512 13647 4.252570 AGAGTAAGTCCTGGCTAGCTAA 57.747 45.455 15.72 2.40 0.00 3.09
4679 15024 1.879380 TGGCACAAGACTGGAAAATCG 59.121 47.619 0.00 0.00 31.92 3.34
4691 15036 7.432869 AGACTGGAAAATCGAGATCTATCTTG 58.567 38.462 0.00 1.30 37.25 3.02
4823 15174 3.713764 ACCTTGGGGTAGATCAAGATGAG 59.286 47.826 0.00 0.00 45.32 2.90
4950 15302 2.026542 GGGGAAAACGATCCTACAACCT 60.027 50.000 0.00 0.00 39.57 3.50
4956 15308 2.906354 ACGATCCTACAACCTCAATGC 58.094 47.619 0.00 0.00 0.00 3.56
5022 15374 2.159043 ACCGAGCAGAATCAGGTACATG 60.159 50.000 0.00 0.00 32.76 3.21
5024 15376 3.119291 CGAGCAGAATCAGGTACATGTC 58.881 50.000 0.00 0.00 0.00 3.06
5033 15385 3.181329 TCAGGTACATGTCCATTGACCT 58.819 45.455 9.51 9.51 41.01 3.85
5081 15461 6.479990 TGGATCATATAAAGCTTCAGTGTTCG 59.520 38.462 0.00 0.00 0.00 3.95
5082 15462 6.701841 GGATCATATAAAGCTTCAGTGTTCGA 59.298 38.462 0.00 0.00 0.00 3.71
5083 15463 7.386299 GGATCATATAAAGCTTCAGTGTTCGAT 59.614 37.037 0.00 0.00 0.00 3.59
5084 15464 9.411801 GATCATATAAAGCTTCAGTGTTCGATA 57.588 33.333 0.00 0.00 0.00 2.92
5085 15465 9.935241 ATCATATAAAGCTTCAGTGTTCGATAT 57.065 29.630 0.00 0.00 0.00 1.63
5089 15469 6.893958 AAAGCTTCAGTGTTCGATATACAG 57.106 37.500 0.00 0.00 0.00 2.74
5090 15470 5.584253 AGCTTCAGTGTTCGATATACAGT 57.416 39.130 0.00 0.00 0.00 3.55
5091 15471 5.967088 AGCTTCAGTGTTCGATATACAGTT 58.033 37.500 0.00 0.00 0.00 3.16
5131 15523 5.680619 TGTACATCCAGTGAACTCTGTTTT 58.319 37.500 0.00 0.00 34.02 2.43
5212 15615 3.367703 CCTGAAACAAGGCCTTGCAATAG 60.368 47.826 39.52 30.14 44.03 1.73
5218 15621 4.010349 ACAAGGCCTTGCAATAGTAGAAC 58.990 43.478 39.52 0.00 44.03 3.01
5235 15647 1.963515 GAACCCCACTGTTGCAATTCT 59.036 47.619 0.59 0.00 0.00 2.40
5335 15829 7.693951 GTGCATTCAACAGTCTCACAAATATAC 59.306 37.037 0.00 0.00 0.00 1.47
5398 16134 6.158598 TGCATTTTTCTTCCTAAATGAGCAC 58.841 36.000 10.72 0.00 41.86 4.40
5443 16186 4.826500 GCATTTAGCAGAGTACAATGTCG 58.173 43.478 0.00 0.00 44.79 4.35
5455 16198 6.430000 AGAGTACAATGTCGCCTTGTAAATTT 59.570 34.615 0.00 0.00 39.92 1.82
5543 16352 1.272769 GTGTCTACAGTTCGGGAAGCT 59.727 52.381 0.00 0.00 0.00 3.74
5628 16743 3.991051 ACCTGTCACACGGCGGAG 61.991 66.667 13.24 5.87 0.00 4.63
5681 16802 2.125350 CCTCTGCCTCTTGACGCC 60.125 66.667 0.00 0.00 0.00 5.68
5763 16916 1.078143 GCACCGAGGGCTCATTTCT 60.078 57.895 0.00 0.00 0.00 2.52
5776 16936 2.295909 CTCATTTCTTTTCCCGGTGCAA 59.704 45.455 0.00 0.00 0.00 4.08
5952 17282 6.529477 GGTTTTTCTCCGTGATGTAGTAGTAC 59.471 42.308 0.37 0.37 0.00 2.73
6025 17360 0.879765 CTGGAGCTTGCCAACTGAAG 59.120 55.000 0.00 0.00 37.52 3.02
6026 17361 0.183492 TGGAGCTTGCCAACTGAAGT 59.817 50.000 0.00 0.00 34.31 3.01
6037 17372 1.728971 CAACTGAAGTTAGCTCGGCTG 59.271 52.381 8.44 0.00 40.10 4.85
6149 17487 6.507900 AGTCGGAATGATATACAACAGTCAG 58.492 40.000 0.00 0.00 33.65 3.51
6155 17493 8.421784 GGAATGATATACAACAGTCAGTCCTTA 58.578 37.037 11.99 0.00 46.62 2.69
6156 17494 9.817809 GAATGATATACAACAGTCAGTCCTTAA 57.182 33.333 0.00 0.00 31.59 1.85
6195 17565 5.380043 CTGAATACCAGACCAAATATGCCT 58.620 41.667 0.00 0.00 45.78 4.75
6204 17574 3.673902 ACCAAATATGCCTGCCAAAAAC 58.326 40.909 0.00 0.00 0.00 2.43
6210 17581 2.600470 TGCCTGCCAAAAACAAAGAG 57.400 45.000 0.00 0.00 0.00 2.85
6373 17744 1.153745 CCGCGTCCTTCTCTTCCAG 60.154 63.158 4.92 0.00 0.00 3.86
6515 17893 2.535485 ATCCAACGCTCGCCATTCCA 62.535 55.000 0.00 0.00 0.00 3.53
6521 17899 0.813610 CGCTCGCCATTCCACCATAA 60.814 55.000 0.00 0.00 0.00 1.90
6548 17926 2.351447 CGCGTGTTACATAGGATCGGAT 60.351 50.000 0.00 0.00 0.00 4.18
6584 17962 5.392286 TCAAAGCGTCGTTGTTTACTTTTT 58.608 33.333 0.00 0.00 0.00 1.94
6622 18000 1.618343 GCCCAACTGCCATGTTTTACT 59.382 47.619 0.00 0.00 0.00 2.24
6680 18058 0.827368 AAGCCAAGGATCGAGAGACC 59.173 55.000 0.00 0.00 46.97 3.85
6711 18089 8.428852 GGATATTTTGCTTGTATTGGGGTAAAT 58.571 33.333 0.00 0.00 0.00 1.40
6728 18106 1.244019 AATCCTTGCCGCCAGTGTTC 61.244 55.000 0.00 0.00 0.00 3.18
6768 18146 4.394920 TGTATGCGAACTCCTCCAAAATTC 59.605 41.667 0.00 0.00 0.00 2.17
6801 18179 6.352516 ACAAGCAAAATATCCTAGAGGTCTG 58.647 40.000 0.00 0.00 36.34 3.51
6868 18264 4.518970 GTGCTAGTCTGAATTTGGGTTTGA 59.481 41.667 0.00 0.00 0.00 2.69
6873 18269 4.051237 GTCTGAATTTGGGTTTGACAAGC 58.949 43.478 0.00 0.00 0.00 4.01
6876 18272 1.408969 ATTTGGGTTTGACAAGCGGT 58.591 45.000 0.00 0.00 0.00 5.68
6879 18275 1.310904 TGGGTTTGACAAGCGGTAAC 58.689 50.000 0.00 0.00 0.00 2.50
7038 18845 4.997565 ACATTAAAAAGATGCCACATCCG 58.002 39.130 4.00 0.00 0.00 4.18
7040 18847 1.923356 AAAAAGATGCCACATCCGGT 58.077 45.000 0.00 0.00 0.00 5.28
7090 18897 4.894114 ACACCTAGCCTATGATTAACTCGT 59.106 41.667 0.00 0.00 0.00 4.18
7162 18969 5.253330 CACCCAATAACCAAAAGCTCTCTA 58.747 41.667 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.011517 GGTGAGCGGGGAAACGGA 62.012 66.667 0.00 0.00 0.00 4.69
25 3064 4.227134 CAGGATCGGTGAGCGGGG 62.227 72.222 3.57 0.00 0.00 5.73
53 3092 3.286329 ACATGATGATGGCTAGCAACA 57.714 42.857 18.24 13.09 33.39 3.33
57 3096 2.740981 GCAGTACATGATGATGGCTAGC 59.259 50.000 6.04 6.04 33.39 3.42
69 3108 4.576463 GGGGACTATTTTCAGCAGTACATG 59.424 45.833 0.00 0.00 0.00 3.21
88 3127 0.494551 TTAAGACAGGGGAGTGGGGA 59.505 55.000 0.00 0.00 0.00 4.81
100 3139 7.998580 AGGGTAACGTTTGAATTTTTAAGACA 58.001 30.769 5.91 0.00 37.60 3.41
104 3144 6.479331 GCCAAGGGTAACGTTTGAATTTTTAA 59.521 34.615 5.91 0.00 43.36 1.52
114 3154 1.161843 CATCGCCAAGGGTAACGTTT 58.838 50.000 5.91 0.00 43.36 3.60
132 3173 1.527034 AGGTAGTAACGTGCGAGTCA 58.473 50.000 0.00 0.00 0.00 3.41
177 3223 0.310543 ACAAACCGTCGCTACACGTA 59.689 50.000 0.00 0.00 44.19 3.57
196 3264 2.646175 CCGCTCTCCTCGGTTCCAA 61.646 63.158 0.00 0.00 41.85 3.53
246 3314 1.285078 GTGTGGGAAGGGAAGGCTTAT 59.715 52.381 0.00 0.00 0.00 1.73
251 3319 0.036875 GAGTGTGTGGGAAGGGAAGG 59.963 60.000 0.00 0.00 0.00 3.46
267 3335 2.986050 TCTTTTGTAGACCCAGGGAGT 58.014 47.619 14.54 0.17 0.00 3.85
317 3385 5.958380 TCAGTATCTGATGTACAACTCCCTT 59.042 40.000 0.00 0.00 35.39 3.95
371 3442 9.618890 TCTCCCTCTCAACAGAAAATAAATATG 57.381 33.333 0.00 0.00 0.00 1.78
372 3443 9.844257 CTCTCCCTCTCAACAGAAAATAAATAT 57.156 33.333 0.00 0.00 0.00 1.28
373 3444 9.046846 TCTCTCCCTCTCAACAGAAAATAAATA 57.953 33.333 0.00 0.00 0.00 1.40
375 3446 7.316393 TCTCTCCCTCTCAACAGAAAATAAA 57.684 36.000 0.00 0.00 0.00 1.40
376 3447 6.935240 TCTCTCCCTCTCAACAGAAAATAA 57.065 37.500 0.00 0.00 0.00 1.40
377 3448 6.935240 TTCTCTCCCTCTCAACAGAAAATA 57.065 37.500 0.00 0.00 0.00 1.40
379 3450 5.832539 ATTCTCTCCCTCTCAACAGAAAA 57.167 39.130 0.00 0.00 0.00 2.29
381 3452 4.564406 GCAATTCTCTCCCTCTCAACAGAA 60.564 45.833 0.00 0.00 0.00 3.02
383 3454 3.269178 GCAATTCTCTCCCTCTCAACAG 58.731 50.000 0.00 0.00 0.00 3.16
385 3456 3.006247 GTGCAATTCTCTCCCTCTCAAC 58.994 50.000 0.00 0.00 0.00 3.18
388 3459 3.340814 TTGTGCAATTCTCTCCCTCTC 57.659 47.619 0.00 0.00 0.00 3.20
389 3460 3.795688 TTTGTGCAATTCTCTCCCTCT 57.204 42.857 0.00 0.00 0.00 3.69
390 3461 4.991472 GAATTTGTGCAATTCTCTCCCTC 58.009 43.478 2.90 0.00 45.30 4.30
400 3471 9.039870 TGAAATAAAAACGAGAATTTGTGCAAT 57.960 25.926 0.00 0.00 0.00 3.56
410 3481 5.049336 TCGCACCATGAAATAAAAACGAGAA 60.049 36.000 0.00 0.00 0.00 2.87
433 3505 4.321974 CCTGGCAAACAAGGGAAAATAGTC 60.322 45.833 0.00 0.00 0.00 2.59
448 3520 4.657814 AGAGGTTTTATCTCCTGGCAAA 57.342 40.909 0.00 0.00 33.83 3.68
528 3601 7.901029 TGCTCTCAGATTCTTTTCTAAGAGAA 58.099 34.615 5.93 0.00 39.57 2.87
588 3698 2.586245 CTCGCTTGCATCCCCAGA 59.414 61.111 0.00 0.00 0.00 3.86
592 3702 3.567797 GACGCTCGCTTGCATCCC 61.568 66.667 0.00 0.00 0.00 3.85
594 3704 3.567797 GGGACGCTCGCTTGCATC 61.568 66.667 0.00 0.00 0.00 3.91
607 3717 1.812686 TATGCGGGACTATGCGGGAC 61.813 60.000 0.00 0.00 0.00 4.46
608 3718 1.116536 TTATGCGGGACTATGCGGGA 61.117 55.000 0.00 0.00 0.00 5.14
609 3719 0.250124 TTTATGCGGGACTATGCGGG 60.250 55.000 0.00 0.00 0.00 6.13
610 3720 1.808411 ATTTATGCGGGACTATGCGG 58.192 50.000 0.00 0.00 0.00 5.69
611 3721 3.845178 TCTATTTATGCGGGACTATGCG 58.155 45.455 0.00 0.00 0.00 4.73
612 3722 4.081642 TCCTCTATTTATGCGGGACTATGC 60.082 45.833 0.00 0.00 0.00 3.14
613 3723 5.661056 TCCTCTATTTATGCGGGACTATG 57.339 43.478 0.00 0.00 0.00 2.23
614 3724 6.875972 AATCCTCTATTTATGCGGGACTAT 57.124 37.500 0.00 0.00 0.00 2.12
615 3725 6.952358 ACTAATCCTCTATTTATGCGGGACTA 59.048 38.462 0.00 0.00 0.00 2.59
616 3726 5.780793 ACTAATCCTCTATTTATGCGGGACT 59.219 40.000 0.00 0.00 0.00 3.85
617 3727 6.038997 ACTAATCCTCTATTTATGCGGGAC 57.961 41.667 0.00 0.00 0.00 4.46
618 3728 6.681729 AACTAATCCTCTATTTATGCGGGA 57.318 37.500 0.00 0.00 0.00 5.14
619 3729 8.842358 TTAAACTAATCCTCTATTTATGCGGG 57.158 34.615 0.00 0.00 0.00 6.13
640 3750 9.243105 CCCCTCTCAGATTTAGTTCAATTTAAA 57.757 33.333 0.00 0.00 0.00 1.52
641 3751 8.390921 ACCCCTCTCAGATTTAGTTCAATTTAA 58.609 33.333 0.00 0.00 0.00 1.52
642 3752 7.928873 ACCCCTCTCAGATTTAGTTCAATTTA 58.071 34.615 0.00 0.00 0.00 1.40
643 3753 6.794534 ACCCCTCTCAGATTTAGTTCAATTT 58.205 36.000 0.00 0.00 0.00 1.82
644 3754 6.394345 ACCCCTCTCAGATTTAGTTCAATT 57.606 37.500 0.00 0.00 0.00 2.32
645 3755 7.698163 ATACCCCTCTCAGATTTAGTTCAAT 57.302 36.000 0.00 0.00 0.00 2.57
646 3756 7.510675 AATACCCCTCTCAGATTTAGTTCAA 57.489 36.000 0.00 0.00 0.00 2.69
647 3757 7.510675 AAATACCCCTCTCAGATTTAGTTCA 57.489 36.000 0.00 0.00 0.00 3.18
655 3765 9.102453 GGTTAGTTATAAATACCCCTCTCAGAT 57.898 37.037 0.00 0.00 0.00 2.90
656 3766 7.232127 CGGTTAGTTATAAATACCCCTCTCAGA 59.768 40.741 1.48 0.00 0.00 3.27
657 3767 7.232127 TCGGTTAGTTATAAATACCCCTCTCAG 59.768 40.741 1.48 0.00 0.00 3.35
658 3768 7.068702 TCGGTTAGTTATAAATACCCCTCTCA 58.931 38.462 1.48 0.00 0.00 3.27
659 3769 7.530426 TCGGTTAGTTATAAATACCCCTCTC 57.470 40.000 1.48 0.00 0.00 3.20
660 3770 7.919385 TTCGGTTAGTTATAAATACCCCTCT 57.081 36.000 1.48 0.00 0.00 3.69
661 3771 7.442364 GGTTTCGGTTAGTTATAAATACCCCTC 59.558 40.741 1.48 0.00 0.00 4.30
662 3772 7.127801 AGGTTTCGGTTAGTTATAAATACCCCT 59.872 37.037 1.48 2.73 0.00 4.79
663 3773 7.282585 AGGTTTCGGTTAGTTATAAATACCCC 58.717 38.462 1.48 0.66 0.00 4.95
670 3780 8.676401 GGCAAAATAGGTTTCGGTTAGTTATAA 58.324 33.333 0.00 0.00 0.00 0.98
671 3781 8.048514 AGGCAAAATAGGTTTCGGTTAGTTATA 58.951 33.333 0.00 0.00 0.00 0.98
672 3782 6.888088 AGGCAAAATAGGTTTCGGTTAGTTAT 59.112 34.615 0.00 0.00 0.00 1.89
673 3783 6.240145 AGGCAAAATAGGTTTCGGTTAGTTA 58.760 36.000 0.00 0.00 0.00 2.24
674 3784 5.074804 AGGCAAAATAGGTTTCGGTTAGTT 58.925 37.500 0.00 0.00 0.00 2.24
675 3785 4.659115 AGGCAAAATAGGTTTCGGTTAGT 58.341 39.130 0.00 0.00 0.00 2.24
676 3786 5.220529 CGTAGGCAAAATAGGTTTCGGTTAG 60.221 44.000 0.00 0.00 0.00 2.34
677 3787 4.630940 CGTAGGCAAAATAGGTTTCGGTTA 59.369 41.667 0.00 0.00 0.00 2.85
678 3788 3.437741 CGTAGGCAAAATAGGTTTCGGTT 59.562 43.478 0.00 0.00 0.00 4.44
679 3789 3.004862 CGTAGGCAAAATAGGTTTCGGT 58.995 45.455 0.00 0.00 0.00 4.69
680 3790 3.264104 TCGTAGGCAAAATAGGTTTCGG 58.736 45.455 0.00 0.00 0.00 4.30
681 3791 4.726876 GCTTCGTAGGCAAAATAGGTTTCG 60.727 45.833 0.00 0.00 0.00 3.46
682 3792 4.659088 GCTTCGTAGGCAAAATAGGTTTC 58.341 43.478 0.00 0.00 0.00 2.78
683 3793 3.126343 CGCTTCGTAGGCAAAATAGGTTT 59.874 43.478 0.00 0.00 0.00 3.27
684 3794 2.676342 CGCTTCGTAGGCAAAATAGGTT 59.324 45.455 0.00 0.00 0.00 3.50
685 3795 2.277084 CGCTTCGTAGGCAAAATAGGT 58.723 47.619 0.00 0.00 0.00 3.08
686 3796 1.597663 CCGCTTCGTAGGCAAAATAGG 59.402 52.381 0.00 0.00 0.00 2.57
687 3797 1.597663 CCCGCTTCGTAGGCAAAATAG 59.402 52.381 0.00 0.00 0.00 1.73
688 3798 1.658994 CCCGCTTCGTAGGCAAAATA 58.341 50.000 0.00 0.00 0.00 1.40
689 3799 1.029947 CCCCGCTTCGTAGGCAAAAT 61.030 55.000 0.00 0.00 0.00 1.82
690 3800 1.673009 CCCCGCTTCGTAGGCAAAA 60.673 57.895 0.00 0.00 0.00 2.44
691 3801 2.046700 CCCCGCTTCGTAGGCAAA 60.047 61.111 0.00 0.00 0.00 3.68
692 3802 4.770874 GCCCCGCTTCGTAGGCAA 62.771 66.667 11.13 0.00 41.76 4.52
696 3806 3.843117 GATCCGCCCCGCTTCGTAG 62.843 68.421 0.00 0.00 0.00 3.51
697 3807 3.908081 GATCCGCCCCGCTTCGTA 61.908 66.667 0.00 0.00 0.00 3.43
717 3827 3.390521 TGCAGTAGGGGTGCGGAG 61.391 66.667 0.00 0.00 44.35 4.63
718 3828 3.702048 GTGCAGTAGGGGTGCGGA 61.702 66.667 0.00 0.00 44.35 5.54
720 3830 4.373116 ACGTGCAGTAGGGGTGCG 62.373 66.667 0.00 0.00 44.35 5.34
721 3831 2.434359 GACGTGCAGTAGGGGTGC 60.434 66.667 0.00 0.00 41.59 5.01
722 3832 1.079819 CAGACGTGCAGTAGGGGTG 60.080 63.158 0.00 0.00 0.00 4.61
723 3833 3.377656 CAGACGTGCAGTAGGGGT 58.622 61.111 0.00 0.00 0.00 4.95
744 3854 3.411517 CTGGGGTGCAGTAGGGGG 61.412 72.222 0.00 0.00 0.00 5.40
745 3855 4.115199 GCTGGGGTGCAGTAGGGG 62.115 72.222 0.00 0.00 0.00 4.79
746 3856 4.473520 CGCTGGGGTGCAGTAGGG 62.474 72.222 0.00 0.00 0.00 3.53
747 3857 3.390521 TCGCTGGGGTGCAGTAGG 61.391 66.667 0.00 0.00 0.00 3.18
748 3858 2.125512 GTCGCTGGGGTGCAGTAG 60.126 66.667 0.00 0.00 0.00 2.57
749 3859 2.920384 TGTCGCTGGGGTGCAGTA 60.920 61.111 0.00 0.00 0.00 2.74
750 3860 4.626081 GTGTCGCTGGGGTGCAGT 62.626 66.667 0.00 0.00 0.00 4.40
751 3861 4.624364 TGTGTCGCTGGGGTGCAG 62.624 66.667 0.00 0.00 0.00 4.41
752 3862 4.182433 TTGTGTCGCTGGGGTGCA 62.182 61.111 0.00 0.00 0.00 4.57
753 3863 3.660111 GTTGTGTCGCTGGGGTGC 61.660 66.667 0.00 0.00 0.00 5.01
754 3864 2.978010 GGTTGTGTCGCTGGGGTG 60.978 66.667 0.00 0.00 0.00 4.61
755 3865 4.265056 GGGTTGTGTCGCTGGGGT 62.265 66.667 0.00 0.00 0.00 4.95
756 3866 3.783362 TTGGGTTGTGTCGCTGGGG 62.783 63.158 0.00 0.00 0.00 4.96
759 3869 1.008538 GCTTTGGGTTGTGTCGCTG 60.009 57.895 0.00 0.00 0.00 5.18
927 4054 4.678743 GGGGCGGGGCAACTTCTT 62.679 66.667 0.00 0.00 0.00 2.52
1147 4376 1.977854 AGCAGATAACACCACCAGACA 59.022 47.619 0.00 0.00 0.00 3.41
1158 4387 0.548510 AGGCCCCAGAAGCAGATAAC 59.451 55.000 0.00 0.00 0.00 1.89
1175 4413 0.679960 GGATCAAACCGAACCCCAGG 60.680 60.000 0.00 0.00 30.25 4.45
1202 4440 3.792053 ATCAATCGCGACGCCCCTC 62.792 63.158 12.93 0.00 0.00 4.30
1203 4441 3.792053 GATCAATCGCGACGCCCCT 62.792 63.158 12.93 0.00 0.00 4.79
1204 4442 3.338676 GATCAATCGCGACGCCCC 61.339 66.667 12.93 0.00 0.00 5.80
1205 4443 1.498865 ATTGATCAATCGCGACGCCC 61.499 55.000 12.93 0.07 0.00 6.13
1206 4444 0.383491 CATTGATCAATCGCGACGCC 60.383 55.000 18.16 0.00 0.00 5.68
1207 4445 0.576798 TCATTGATCAATCGCGACGC 59.423 50.000 18.16 10.49 0.00 5.19
1223 4461 1.273606 CTACCGGAATCCATCGCTCAT 59.726 52.381 9.46 0.00 0.00 2.90
1279 4517 1.226859 CGCGCTCAAAGTCCGGATA 60.227 57.895 7.81 0.00 0.00 2.59
1280 4518 2.509336 CGCGCTCAAAGTCCGGAT 60.509 61.111 7.81 0.00 0.00 4.18
1287 4525 3.020026 CTCTGCCACGCGCTCAAAG 62.020 63.158 5.73 0.00 38.78 2.77
1550 4914 3.794028 GTCATGTTCTACAGCTCGATCAC 59.206 47.826 0.00 0.00 0.00 3.06
1574 4938 3.987868 GAGATCGTTACAAACTGAGCACA 59.012 43.478 0.00 0.00 0.00 4.57
1758 7118 8.177119 ACATGGAAACTTAATTAAGTGCAGAA 57.823 30.769 27.29 14.77 45.17 3.02
1856 7714 3.633986 GCTTTTCTTGCAGCCCTACATAT 59.366 43.478 0.00 0.00 0.00 1.78
1857 7715 3.016736 GCTTTTCTTGCAGCCCTACATA 58.983 45.455 0.00 0.00 0.00 2.29
2163 9516 9.732130 ATCTTCTCTGCACTTAATTAAGTTTCT 57.268 29.630 24.99 4.37 43.57 2.52
2194 9571 3.695556 TCGACCACGTGACATAATTAGGA 59.304 43.478 19.30 0.00 40.69 2.94
2463 9842 3.044305 GCTGCAAACGAGCCGAGT 61.044 61.111 0.00 0.00 0.00 4.18
2468 9847 0.811281 ATTTAGGGCTGCAAACGAGC 59.189 50.000 0.50 0.00 35.57 5.03
2566 9945 1.800713 GACCGAGAAACGAGCCGAC 60.801 63.158 1.50 0.00 45.77 4.79
2758 10138 1.464734 TCTCTGCTTAGTGGAGACCG 58.535 55.000 3.18 0.00 38.24 4.79
2891 10296 3.764434 AGATCAGTCTCCGCTTAACAGAA 59.236 43.478 0.00 0.00 0.00 3.02
2919 10422 3.771491 GTGACAGACAGCTGCGCG 61.771 66.667 15.27 0.00 46.26 6.86
2973 10476 1.596954 CCACGAAACAAAACAGAGCGG 60.597 52.381 0.00 0.00 0.00 5.52
3037 10590 0.240945 CGACCCAACAGCACAAATCC 59.759 55.000 0.00 0.00 0.00 3.01
3082 10720 3.999663 CTGGAGGCTAAACTGAAAGAGTG 59.000 47.826 0.00 0.00 37.43 3.51
3305 11028 5.762218 CACTGGACTCTGTTTCAGAAGAAAT 59.238 40.000 1.22 0.00 44.87 2.17
3324 11047 6.769822 AGCCAAAGACAGATATAAATCACTGG 59.230 38.462 0.00 0.00 34.28 4.00
3332 11062 9.826574 AACGTATTAAGCCAAAGACAGATATAA 57.173 29.630 0.00 0.00 0.00 0.98
3363 11093 3.302365 TCTTTTGCCTTGCATTGCTAC 57.698 42.857 10.49 0.00 38.76 3.58
3391 11134 6.820656 AGTGAACAGAGGCAGTAAATGATTAG 59.179 38.462 0.00 0.00 0.00 1.73
3402 11145 6.183360 CGTCTTATAAAAGTGAACAGAGGCAG 60.183 42.308 0.00 0.00 34.13 4.85
3403 11146 5.637810 CGTCTTATAAAAGTGAACAGAGGCA 59.362 40.000 0.00 0.00 34.13 4.75
3404 11147 5.638234 ACGTCTTATAAAAGTGAACAGAGGC 59.362 40.000 0.00 0.00 34.13 4.70
3405 11148 7.653767 AACGTCTTATAAAAGTGAACAGAGG 57.346 36.000 0.00 0.00 34.13 3.69
3413 11156 9.968743 GGATGTCTAAAACGTCTTATAAAAGTG 57.031 33.333 0.00 0.00 42.58 3.16
3414 11157 9.715121 TGGATGTCTAAAACGTCTTATAAAAGT 57.285 29.630 0.00 0.00 42.58 2.66
3416 11159 9.932207 TCTGGATGTCTAAAACGTCTTATAAAA 57.068 29.630 0.00 0.00 42.58 1.52
3417 11160 9.362539 GTCTGGATGTCTAAAACGTCTTATAAA 57.637 33.333 0.00 0.00 42.58 1.40
3418 11161 8.525316 TGTCTGGATGTCTAAAACGTCTTATAA 58.475 33.333 0.00 0.00 42.58 0.98
3419 11162 7.972277 GTGTCTGGATGTCTAAAACGTCTTATA 59.028 37.037 0.00 0.00 42.58 0.98
3420 11163 6.812160 GTGTCTGGATGTCTAAAACGTCTTAT 59.188 38.462 0.00 0.00 42.58 1.73
3421 11164 6.015688 AGTGTCTGGATGTCTAAAACGTCTTA 60.016 38.462 0.00 0.00 42.58 2.10
3422 11165 4.989168 GTGTCTGGATGTCTAAAACGTCTT 59.011 41.667 0.00 0.00 42.58 3.01
3423 11166 4.281182 AGTGTCTGGATGTCTAAAACGTCT 59.719 41.667 0.00 0.00 42.58 4.18
3424 11167 4.386049 CAGTGTCTGGATGTCTAAAACGTC 59.614 45.833 0.00 0.00 42.29 4.34
3425 11168 4.202223 ACAGTGTCTGGATGTCTAAAACGT 60.202 41.667 0.00 0.00 35.51 3.99
3426 11169 4.307432 ACAGTGTCTGGATGTCTAAAACG 58.693 43.478 0.00 0.00 35.51 3.60
3427 11170 4.691216 GGACAGTGTCTGGATGTCTAAAAC 59.309 45.833 22.18 0.00 42.36 2.43
3428 11171 4.346709 TGGACAGTGTCTGGATGTCTAAAA 59.653 41.667 22.18 0.00 42.36 1.52
3429 11172 3.901222 TGGACAGTGTCTGGATGTCTAAA 59.099 43.478 22.18 0.00 42.36 1.85
3430 11173 3.506398 TGGACAGTGTCTGGATGTCTAA 58.494 45.455 22.18 0.00 42.36 2.10
3431 11174 3.169512 TGGACAGTGTCTGGATGTCTA 57.830 47.619 22.18 0.00 42.36 2.59
3432 11175 2.015456 TGGACAGTGTCTGGATGTCT 57.985 50.000 22.18 0.00 42.36 3.41
3433 11176 2.839486 TTGGACAGTGTCTGGATGTC 57.161 50.000 22.18 4.97 42.07 3.06
3434 11177 3.214328 GTTTTGGACAGTGTCTGGATGT 58.786 45.455 22.18 0.00 35.51 3.06
3435 11178 3.213506 TGTTTTGGACAGTGTCTGGATG 58.786 45.455 22.18 0.00 35.51 3.51
3436 11179 3.576078 TGTTTTGGACAGTGTCTGGAT 57.424 42.857 22.18 0.00 35.51 3.41
3446 11189 5.164954 GCTTGTTTTGTACTGTTTTGGACA 58.835 37.500 0.00 0.00 36.65 4.02
3447 11190 5.164954 TGCTTGTTTTGTACTGTTTTGGAC 58.835 37.500 0.00 0.00 0.00 4.02
3448 11191 5.047660 ACTGCTTGTTTTGTACTGTTTTGGA 60.048 36.000 0.00 0.00 0.00 3.53
3449 11192 5.167845 ACTGCTTGTTTTGTACTGTTTTGG 58.832 37.500 0.00 0.00 0.00 3.28
3450 11193 6.033831 CAGACTGCTTGTTTTGTACTGTTTTG 59.966 38.462 0.00 0.00 0.00 2.44
3451 11194 6.072175 TCAGACTGCTTGTTTTGTACTGTTTT 60.072 34.615 0.00 0.00 0.00 2.43
3452 11195 5.414454 TCAGACTGCTTGTTTTGTACTGTTT 59.586 36.000 0.00 0.00 0.00 2.83
3453 11196 4.941263 TCAGACTGCTTGTTTTGTACTGTT 59.059 37.500 0.00 0.00 0.00 3.16
3454 11197 4.513442 TCAGACTGCTTGTTTTGTACTGT 58.487 39.130 0.00 0.00 0.00 3.55
3455 11198 5.484173 TTCAGACTGCTTGTTTTGTACTG 57.516 39.130 0.00 0.00 0.00 2.74
3456 11199 5.447279 CGTTTCAGACTGCTTGTTTTGTACT 60.447 40.000 0.00 0.00 0.00 2.73
3457 11200 4.728608 CGTTTCAGACTGCTTGTTTTGTAC 59.271 41.667 0.00 0.00 0.00 2.90
3458 11201 4.393680 ACGTTTCAGACTGCTTGTTTTGTA 59.606 37.500 0.00 0.00 0.00 2.41
3459 11202 3.190535 ACGTTTCAGACTGCTTGTTTTGT 59.809 39.130 0.00 0.00 0.00 2.83
3460 11203 3.758300 ACGTTTCAGACTGCTTGTTTTG 58.242 40.909 0.00 0.00 0.00 2.44
3461 11204 3.689649 AGACGTTTCAGACTGCTTGTTTT 59.310 39.130 0.00 0.00 0.00 2.43
3462 11205 3.270877 AGACGTTTCAGACTGCTTGTTT 58.729 40.909 0.00 0.00 0.00 2.83
3463 11206 2.906354 AGACGTTTCAGACTGCTTGTT 58.094 42.857 0.00 0.00 0.00 2.83
3464 11207 2.604046 AGACGTTTCAGACTGCTTGT 57.396 45.000 0.00 0.00 0.00 3.16
3465 11208 6.706055 TTATAAGACGTTTCAGACTGCTTG 57.294 37.500 0.00 0.00 0.00 4.01
3466 11209 7.724305 TTTTATAAGACGTTTCAGACTGCTT 57.276 32.000 0.00 0.00 0.00 3.91
3467 11210 7.225931 TGTTTTTATAAGACGTTTCAGACTGCT 59.774 33.333 0.00 0.00 0.00 4.24
3468 11211 7.349711 TGTTTTTATAAGACGTTTCAGACTGC 58.650 34.615 0.00 0.00 0.00 4.40
3469 11212 9.710979 TTTGTTTTTATAAGACGTTTCAGACTG 57.289 29.630 0.00 0.00 0.00 3.51
3476 11219 9.471084 CCCTTCATTTGTTTTTATAAGACGTTT 57.529 29.630 0.00 0.00 0.00 3.60
3477 11220 8.852135 TCCCTTCATTTGTTTTTATAAGACGTT 58.148 29.630 0.00 0.00 0.00 3.99
3478 11221 8.398878 TCCCTTCATTTGTTTTTATAAGACGT 57.601 30.769 0.00 0.00 0.00 4.34
3479 11222 8.512138 ACTCCCTTCATTTGTTTTTATAAGACG 58.488 33.333 0.00 0.00 0.00 4.18
3487 11230 9.753674 TGATAGATACTCCCTTCATTTGTTTTT 57.246 29.630 0.00 0.00 0.00 1.94
3488 11231 9.753674 TTGATAGATACTCCCTTCATTTGTTTT 57.246 29.630 0.00 0.00 0.00 2.43
3489 11232 9.753674 TTTGATAGATACTCCCTTCATTTGTTT 57.246 29.630 0.00 0.00 0.00 2.83
3490 11233 9.178758 GTTTGATAGATACTCCCTTCATTTGTT 57.821 33.333 0.00 0.00 0.00 2.83
3491 11234 8.552296 AGTTTGATAGATACTCCCTTCATTTGT 58.448 33.333 0.00 0.00 0.00 2.83
3492 11235 8.970859 AGTTTGATAGATACTCCCTTCATTTG 57.029 34.615 0.00 0.00 0.00 2.32
3495 11238 9.440761 AGTAAGTTTGATAGATACTCCCTTCAT 57.559 33.333 0.00 0.00 0.00 2.57
3496 11239 8.696374 CAGTAAGTTTGATAGATACTCCCTTCA 58.304 37.037 0.00 0.00 0.00 3.02
3497 11240 8.915036 TCAGTAAGTTTGATAGATACTCCCTTC 58.085 37.037 0.00 0.00 0.00 3.46
3498 11241 8.840200 TCAGTAAGTTTGATAGATACTCCCTT 57.160 34.615 0.00 0.00 0.00 3.95
3499 11242 8.282982 TCTCAGTAAGTTTGATAGATACTCCCT 58.717 37.037 0.00 0.00 0.00 4.20
3500 11243 8.466617 TCTCAGTAAGTTTGATAGATACTCCC 57.533 38.462 0.00 0.00 0.00 4.30
3564 11319 2.296471 AGTCACTGTTCACTAACTCCGG 59.704 50.000 0.00 0.00 36.51 5.14
3566 11321 7.964604 AAAATAGTCACTGTTCACTAACTCC 57.035 36.000 0.00 0.00 36.51 3.85
3596 12264 7.220741 TGTGTATTCTATCTCAGTCATAGGC 57.779 40.000 0.00 0.00 0.00 3.93
3647 12315 7.592903 GCTAAGCTAAATGGAATTATGTGAAGC 59.407 37.037 0.00 0.00 33.67 3.86
3648 12316 8.844244 AGCTAAGCTAAATGGAATTATGTGAAG 58.156 33.333 0.00 0.00 36.99 3.02
3653 12321 7.211966 AGCAGCTAAGCTAAATGGAATTATG 57.788 36.000 0.00 0.00 44.50 1.90
3707 12390 2.951642 TCCCACTTGTCTCAGCAAAAAG 59.048 45.455 0.00 0.00 0.00 2.27
3714 12397 4.892345 TGATAGAGATCCCACTTGTCTCAG 59.108 45.833 4.65 0.00 40.58 3.35
3757 12443 4.686972 TCTTTCGATGCCTCACAGATAAG 58.313 43.478 0.00 0.00 0.00 1.73
3791 12477 7.766278 GCCTGAAGAATCTGTGAGATAAACTTA 59.234 37.037 0.00 0.00 32.89 2.24
3792 12478 6.597280 GCCTGAAGAATCTGTGAGATAAACTT 59.403 38.462 0.00 0.00 32.89 2.66
3795 12481 5.045651 TGGCCTGAAGAATCTGTGAGATAAA 60.046 40.000 3.32 0.00 32.89 1.40
3817 12503 3.063997 GTCTTGGCAGTAACGATCAATGG 59.936 47.826 0.00 0.00 0.00 3.16
3853 12539 1.526384 GCAAAGCGACGGACGAATTAC 60.526 52.381 3.67 0.00 45.77 1.89
3860 12546 1.298859 AATCTGGCAAAGCGACGGAC 61.299 55.000 0.00 0.00 0.00 4.79
3864 12550 0.449388 CCTCAATCTGGCAAAGCGAC 59.551 55.000 0.00 0.00 0.00 5.19
3889 12575 1.718757 GGGCACTCGATCCATGCAAC 61.719 60.000 11.39 2.18 41.27 4.17
3900 12586 2.083167 ATTTGCAATTTGGGCACTCG 57.917 45.000 0.00 0.00 41.75 4.18
3965 12651 7.937942 ACTAGAGAACCGAGCATAGAAGTAATA 59.062 37.037 0.00 0.00 0.00 0.98
3966 12652 6.773685 ACTAGAGAACCGAGCATAGAAGTAAT 59.226 38.462 0.00 0.00 0.00 1.89
3973 12659 6.380095 AAACTACTAGAGAACCGAGCATAG 57.620 41.667 0.00 0.00 0.00 2.23
3989 12675 8.593679 CCAGATTTTAATTTGGGGAAAACTACT 58.406 33.333 4.52 0.00 37.10 2.57
3993 12679 7.329962 CGTACCAGATTTTAATTTGGGGAAAAC 59.670 37.037 14.40 5.76 43.11 2.43
3996 12682 6.011481 ACGTACCAGATTTTAATTTGGGGAA 58.989 36.000 14.40 0.41 43.11 3.97
3997 12683 5.572252 ACGTACCAGATTTTAATTTGGGGA 58.428 37.500 14.40 2.22 43.11 4.81
4016 12702 3.430042 ACAGAGGGAGTACAAGACGTA 57.570 47.619 0.00 0.00 0.00 3.57
4017 12703 2.289592 ACAGAGGGAGTACAAGACGT 57.710 50.000 0.00 0.00 0.00 4.34
4018 12704 2.094649 GGAACAGAGGGAGTACAAGACG 60.095 54.545 0.00 0.00 0.00 4.18
4019 12705 3.056465 CAGGAACAGAGGGAGTACAAGAC 60.056 52.174 0.00 0.00 0.00 3.01
4020 12706 3.165875 CAGGAACAGAGGGAGTACAAGA 58.834 50.000 0.00 0.00 0.00 3.02
4021 12707 3.165875 TCAGGAACAGAGGGAGTACAAG 58.834 50.000 0.00 0.00 0.00 3.16
4022 12708 3.254093 TCAGGAACAGAGGGAGTACAA 57.746 47.619 0.00 0.00 0.00 2.41
4023 12709 2.992847 TCAGGAACAGAGGGAGTACA 57.007 50.000 0.00 0.00 0.00 2.90
4024 12710 3.680196 GCAATCAGGAACAGAGGGAGTAC 60.680 52.174 0.00 0.00 0.00 2.73
4025 12711 2.501723 GCAATCAGGAACAGAGGGAGTA 59.498 50.000 0.00 0.00 0.00 2.59
4026 12712 1.280421 GCAATCAGGAACAGAGGGAGT 59.720 52.381 0.00 0.00 0.00 3.85
4027 12713 1.280133 TGCAATCAGGAACAGAGGGAG 59.720 52.381 0.00 0.00 0.00 4.30
4028 12714 1.361204 TGCAATCAGGAACAGAGGGA 58.639 50.000 0.00 0.00 0.00 4.20
4029 12715 2.295885 GATGCAATCAGGAACAGAGGG 58.704 52.381 0.00 0.00 44.70 4.30
4041 12727 9.325150 CAAATTTTGAAAACATGAGATGCAATC 57.675 29.630 0.00 0.00 46.04 2.67
4042 12728 8.842280 ACAAATTTTGAAAACATGAGATGCAAT 58.158 25.926 15.81 0.00 0.00 3.56
4043 12729 8.211116 ACAAATTTTGAAAACATGAGATGCAA 57.789 26.923 15.81 0.00 0.00 4.08
4044 12730 7.789273 ACAAATTTTGAAAACATGAGATGCA 57.211 28.000 15.81 0.00 0.00 3.96
4045 12731 7.799914 GGAACAAATTTTGAAAACATGAGATGC 59.200 33.333 15.81 0.00 0.00 3.91
4046 12732 8.828644 TGGAACAAATTTTGAAAACATGAGATG 58.171 29.630 15.81 0.00 31.92 2.90
4047 12733 8.961294 TGGAACAAATTTTGAAAACATGAGAT 57.039 26.923 15.81 0.00 31.92 2.75
4066 12752 8.611757 CACTCGAATTGACATATATTTGGAACA 58.388 33.333 0.00 0.00 0.00 3.18
4067 12753 8.826710 TCACTCGAATTGACATATATTTGGAAC 58.173 33.333 0.00 0.00 0.00 3.62
4068 12754 8.956533 TCACTCGAATTGACATATATTTGGAA 57.043 30.769 0.00 0.00 0.00 3.53
4089 12775 2.368548 TGGTGTGTGCAGAGTTATCACT 59.631 45.455 0.00 0.00 35.17 3.41
4090 12776 2.766313 TGGTGTGTGCAGAGTTATCAC 58.234 47.619 0.00 0.00 0.00 3.06
4091 12777 3.007831 TGATGGTGTGTGCAGAGTTATCA 59.992 43.478 0.00 0.00 0.00 2.15
4092 12778 3.372206 GTGATGGTGTGTGCAGAGTTATC 59.628 47.826 0.00 0.00 0.00 1.75
4093 12779 3.244526 TGTGATGGTGTGTGCAGAGTTAT 60.245 43.478 0.00 0.00 0.00 1.89
4094 12780 2.103941 TGTGATGGTGTGTGCAGAGTTA 59.896 45.455 0.00 0.00 0.00 2.24
4095 12781 1.134128 TGTGATGGTGTGTGCAGAGTT 60.134 47.619 0.00 0.00 0.00 3.01
4096 12782 0.469494 TGTGATGGTGTGTGCAGAGT 59.531 50.000 0.00 0.00 0.00 3.24
4097 12783 1.154197 CTGTGATGGTGTGTGCAGAG 58.846 55.000 0.00 0.00 0.00 3.35
4098 12784 0.886043 GCTGTGATGGTGTGTGCAGA 60.886 55.000 0.00 0.00 0.00 4.26
4099 12785 1.167781 TGCTGTGATGGTGTGTGCAG 61.168 55.000 0.00 0.00 0.00 4.41
4100 12786 0.750911 TTGCTGTGATGGTGTGTGCA 60.751 50.000 0.00 0.00 0.00 4.57
4101 12787 0.039798 CTTGCTGTGATGGTGTGTGC 60.040 55.000 0.00 0.00 0.00 4.57
4116 13246 0.179108 AGAGGGTCGCGTATTCTTGC 60.179 55.000 5.77 0.00 0.00 4.01
4126 13256 0.389948 ATTCACGAACAGAGGGTCGC 60.390 55.000 1.55 0.00 0.00 5.19
4140 13270 1.933853 GACCACGATGCCACTATTCAC 59.066 52.381 0.00 0.00 0.00 3.18
4172 13302 5.432885 ACGTTTTACATCTTCAACCAAGG 57.567 39.130 0.00 0.00 32.22 3.61
4184 13314 6.151985 TGGCCAGAAATCATAACGTTTTACAT 59.848 34.615 5.91 0.00 0.00 2.29
4193 13323 5.009410 CCTCAAGATGGCCAGAAATCATAAC 59.991 44.000 13.05 0.00 0.00 1.89
4207 13337 2.507484 TGAAGTGCAACCTCAAGATGG 58.493 47.619 0.00 0.00 33.62 3.51
4448 13580 9.354673 CTATTTAATTCAGAAGGCCCTGATAAA 57.645 33.333 11.93 13.66 42.18 1.40
4509 13644 8.826765 ACCTACAGGGGTATATGAATGAATTAG 58.173 37.037 0.00 0.00 37.90 1.73
4510 13645 8.751215 ACCTACAGGGGTATATGAATGAATTA 57.249 34.615 0.00 0.00 37.90 1.40
4511 13646 7.648177 ACCTACAGGGGTATATGAATGAATT 57.352 36.000 0.00 0.00 37.90 2.17
4512 13647 8.933522 ATACCTACAGGGGTATATGAATGAAT 57.066 34.615 4.57 0.00 46.95 2.57
4543 13678 1.913262 TGACAGGTGCTCCCGTCAT 60.913 57.895 17.80 0.00 39.88 3.06
4544 13679 2.523168 TGACAGGTGCTCCCGTCA 60.523 61.111 17.80 17.80 41.35 4.35
4679 15024 8.740906 TCACCGTTATTATCCAAGATAGATCTC 58.259 37.037 0.00 0.00 35.76 2.75
4691 15036 6.769341 ACCCTTTTATGTCACCGTTATTATCC 59.231 38.462 0.00 0.00 0.00 2.59
4748 15093 1.675641 CTTGCCACCTCCTTTCCGG 60.676 63.158 0.00 0.00 0.00 5.14
4823 15174 1.163554 CAACAAGCTCCTCCTGCTTC 58.836 55.000 0.00 0.00 46.39 3.86
4950 15302 0.918258 TGCAGAGGGTATGGCATTGA 59.082 50.000 4.78 0.00 0.00 2.57
4956 15308 0.387202 CGAGTCTGCAGAGGGTATGG 59.613 60.000 18.89 0.00 0.00 2.74
5091 15471 9.771534 TGGATGTACATACGATTTATTTCATGA 57.228 29.630 13.45 0.00 0.00 3.07
5105 15496 5.967088 ACAGAGTTCACTGGATGTACATAC 58.033 41.667 11.46 11.46 41.59 2.39
5131 15523 7.132805 TCCAATACTCTGAGAAGGAATCCTAA 58.867 38.462 12.44 0.00 31.13 2.69
5212 15615 1.975660 TTGCAACAGTGGGGTTCTAC 58.024 50.000 0.00 0.00 0.00 2.59
5218 15621 2.629617 AGAAAGAATTGCAACAGTGGGG 59.370 45.455 0.00 0.00 0.00 4.96
5235 15647 4.535526 TGTGCAGTATACAGCTGAGAAA 57.464 40.909 23.35 2.81 36.12 2.52
5286 15779 3.504906 TCTTGCAAGCAGAGGAAATTCTG 59.495 43.478 21.99 0.00 45.85 3.02
5315 15809 9.599866 CTTATGGTATATTTGTGAGACTGTTGA 57.400 33.333 0.00 0.00 0.00 3.18
5335 15829 9.832445 TTACATAGAGGACTTAAAAGCTTATGG 57.168 33.333 0.00 0.00 0.00 2.74
5443 16186 6.149633 CAGGAGTTGTACAAATTTACAAGGC 58.850 40.000 10.51 3.21 41.54 4.35
5455 16198 2.899900 AGTGAGATGCAGGAGTTGTACA 59.100 45.455 0.00 0.00 0.00 2.90
5640 16755 1.392534 CCTCAGGGTCAGGGTAGGT 59.607 63.158 0.00 0.00 0.00 3.08
5681 16802 3.708220 GAACTCCTGGAGCGCCTCG 62.708 68.421 23.43 0.00 32.04 4.63
5719 16840 2.178106 ACAGTCGGAAGGGAGATATCCT 59.822 50.000 6.30 0.00 35.88 3.24
5763 16916 6.378564 TGAGAAATATATTTGCACCGGGAAAA 59.621 34.615 15.39 2.03 37.88 2.29
5776 16936 8.160434 AGGAGATGAGCCATGAGAAATATATT 57.840 34.615 0.00 0.00 0.00 1.28
5952 17282 3.305361 CACTCATGCACAGAGATACAACG 59.695 47.826 21.20 0.00 36.91 4.10
6025 17360 3.435671 ACATTAAACACAGCCGAGCTAAC 59.564 43.478 0.00 0.00 36.40 2.34
6026 17361 3.670625 ACATTAAACACAGCCGAGCTAA 58.329 40.909 0.00 0.00 36.40 3.09
6082 17420 2.094752 GCGGTGCTTCCACATTTACATT 60.095 45.455 0.00 0.00 43.88 2.71
6095 17433 0.539438 TGAAATTGGGAGCGGTGCTT 60.539 50.000 5.98 0.00 39.88 3.91
6129 17467 6.821388 AGGACTGACTGTTGTATATCATTCC 58.179 40.000 0.00 0.00 39.82 3.01
6156 17494 1.234821 TCAGGAACGAGCGCATTTTT 58.765 45.000 11.47 0.00 0.00 1.94
6160 17498 1.571919 GTATTCAGGAACGAGCGCAT 58.428 50.000 11.47 0.00 0.00 4.73
6162 17500 0.459585 TGGTATTCAGGAACGAGCGC 60.460 55.000 0.00 0.00 0.00 5.92
6163 17501 1.134367 TCTGGTATTCAGGAACGAGCG 59.866 52.381 0.00 0.00 43.53 5.03
6167 17537 3.328382 TTGGTCTGGTATTCAGGAACG 57.672 47.619 0.00 0.00 43.53 3.95
6195 17565 5.596361 TGGTATTCTCTCTTTGTTTTTGGCA 59.404 36.000 0.00 0.00 0.00 4.92
6204 17574 8.043710 ACTATTTGGTCTGGTATTCTCTCTTTG 58.956 37.037 0.00 0.00 0.00 2.77
6210 17581 5.675538 AGCACTATTTGGTCTGGTATTCTC 58.324 41.667 0.00 0.00 0.00 2.87
6359 17730 1.405391 GCAGAGCTGGAAGAGAAGGAC 60.405 57.143 0.00 0.00 34.07 3.85
6373 17744 2.741055 GGAGGGGAGGAAGCAGAGC 61.741 68.421 0.00 0.00 0.00 4.09
6548 17926 0.110486 GCTTTGAGTCCTCCCAACCA 59.890 55.000 0.00 0.00 0.00 3.67
6584 17962 0.102844 GCACAGTTGCTCTTTTGCCA 59.897 50.000 0.00 0.00 46.17 4.92
6629 18007 9.377312 ACTTGAAAGGAAAAATCGAAATGAAAA 57.623 25.926 0.00 0.00 0.00 2.29
6630 18008 8.940768 ACTTGAAAGGAAAAATCGAAATGAAA 57.059 26.923 0.00 0.00 0.00 2.69
6645 18023 7.867921 TCCTTGGCTTTATATACTTGAAAGGA 58.132 34.615 9.69 9.69 37.66 3.36
6668 18046 3.713826 ATCCTAGAGGTCTCTCGATCC 57.286 52.381 3.49 0.00 44.47 3.36
6680 18058 7.175641 CCCCAATACAAGCAAAATATCCTAGAG 59.824 40.741 0.00 0.00 0.00 2.43
6711 18089 2.281484 GAACACTGGCGGCAAGGA 60.281 61.111 14.48 0.00 0.00 3.36
6801 18179 3.449632 GAAACTAGAGCCAAGGATCGAC 58.550 50.000 0.00 0.00 35.44 4.20
6868 18264 2.047560 GCTCCGGTTACCGCTTGT 60.048 61.111 19.48 0.00 46.86 3.16
6910 18306 0.323725 ATTGATGCAAAGGCCGAGGT 60.324 50.000 0.00 0.00 40.13 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.