Multiple sequence alignment - TraesCS2D01G335700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G335700 chr2D 100.000 6583 0 0 1 6583 429052198 429058780 0.000000e+00 12157.0
1 TraesCS2D01G335700 chr2D 96.914 162 3 2 2 161 564151830 564151669 3.030000e-68 270.0
2 TraesCS2D01G335700 chr2D 93.714 175 9 2 2 175 155293484 155293311 1.820000e-65 261.0
3 TraesCS2D01G335700 chr2D 91.589 107 7 2 186 291 161712495 161712600 5.320000e-31 147.0
4 TraesCS2D01G335700 chr2A 94.176 2833 92 32 1468 4275 558652349 558649565 0.000000e+00 4250.0
5 TraesCS2D01G335700 chr2A 95.101 1980 77 5 4275 6244 558649477 558647508 0.000000e+00 3101.0
6 TraesCS2D01G335700 chr2A 89.945 547 29 12 662 1205 558653158 558652635 0.000000e+00 682.0
7 TraesCS2D01G335700 chr2A 83.195 482 33 7 188 668 558654783 558654349 1.330000e-106 398.0
8 TraesCS2D01G335700 chr2A 82.988 482 34 5 188 668 558662167 558661733 6.190000e-105 392.0
9 TraesCS2D01G335700 chr2A 90.667 225 18 3 1205 1426 558652574 558652350 4.990000e-76 296.0
10 TraesCS2D01G335700 chr2A 92.683 41 1 2 6259 6298 558645908 558645869 2.560000e-04 58.4
11 TraesCS2D01G335700 chr2B 91.125 3110 148 47 1205 4272 506099513 506102536 0.000000e+00 4096.0
12 TraesCS2D01G335700 chr2B 91.388 2334 139 31 4275 6580 506102689 506104988 0.000000e+00 3140.0
13 TraesCS2D01G335700 chr2B 88.101 395 26 9 808 1202 506099076 506099449 3.620000e-122 449.0
14 TraesCS2D01G335700 chr2B 90.000 100 8 2 186 284 320750098 320750196 1.930000e-25 128.0
15 TraesCS2D01G335700 chrUn 95.906 171 3 4 2 170 21016645 21016813 2.340000e-69 274.0
16 TraesCS2D01G335700 chrUn 96.894 161 5 0 1 161 69247975 69248135 3.030000e-68 270.0
17 TraesCS2D01G335700 chrUn 95.082 61 3 0 333 393 30919222 30919162 5.430000e-16 97.1
18 TraesCS2D01G335700 chr3D 97.500 160 3 1 2 160 45086608 45086767 8.410000e-69 272.0
19 TraesCS2D01G335700 chr3D 89.286 112 10 2 186 296 302957300 302957190 8.900000e-29 139.0
20 TraesCS2D01G335700 chr3D 89.286 112 10 2 186 296 481699739 481699629 8.900000e-29 139.0
21 TraesCS2D01G335700 chr1D 97.500 160 2 2 2 160 446587587 446587429 8.410000e-69 272.0
22 TraesCS2D01G335700 chr1D 88.043 92 11 0 317 408 74341833 74341924 6.980000e-20 110.0
23 TraesCS2D01G335700 chr7D 95.238 168 6 2 2 168 493377592 493377426 1.410000e-66 265.0
24 TraesCS2D01G335700 chr7D 92.818 181 9 4 2 180 120337390 120337568 6.550000e-65 259.0
25 TraesCS2D01G335700 chr7D 92.778 180 10 3 2 178 56348663 56348842 2.360000e-64 257.0
26 TraesCS2D01G335700 chr7D 91.667 96 5 3 186 280 189166719 189166626 5.360000e-26 130.0
27 TraesCS2D01G335700 chr7D 87.963 108 10 3 190 296 188996250 188996145 2.490000e-24 124.0
28 TraesCS2D01G335700 chr7D 86.486 111 15 0 186 296 494986590 494986480 8.960000e-24 122.0
29 TraesCS2D01G335700 chr5B 86.567 134 11 7 421 551 467374439 467374568 2.470000e-29 141.0
30 TraesCS2D01G335700 chr3A 89.320 103 11 0 186 288 624791262 624791160 5.360000e-26 130.0
31 TraesCS2D01G335700 chr4A 84.328 134 15 5 423 553 698162287 698162417 6.930000e-25 126.0
32 TraesCS2D01G335700 chr5A 87.500 104 13 0 186 289 495149283 495149386 3.220000e-23 121.0
33 TraesCS2D01G335700 chr7A 83.871 124 16 3 421 542 533896489 533896610 1.500000e-21 115.0
34 TraesCS2D01G335700 chr7B 82.540 126 15 6 421 544 496337331 496337451 3.250000e-18 104.0
35 TraesCS2D01G335700 chr4D 82.114 123 18 3 433 553 38342667 38342547 1.170000e-17 102.0
36 TraesCS2D01G335700 chr1B 81.967 122 18 3 434 553 90310052 90310171 4.200000e-17 100.0
37 TraesCS2D01G335700 chr6A 82.609 115 16 3 434 546 486349410 486349522 1.510000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G335700 chr2D 429052198 429058780 6582 False 12157.000000 12157 100.000000 1 6583 1 chr2D.!!$F2 6582
1 TraesCS2D01G335700 chr2A 558645869 558654783 8914 True 1464.233333 4250 90.961167 188 6298 6 chr2A.!!$R2 6110
2 TraesCS2D01G335700 chr2B 506099076 506104988 5912 False 2561.666667 4096 90.204667 808 6580 3 chr2B.!!$F2 5772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.037697 TGTGATAACGCTTCCGCTGT 60.038 50.000 0.00 0.00 38.22 4.40 F
102 103 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96 F
122 123 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57 F
482 484 0.251165 GCTGGTTCTGTGGGGCTTAA 60.251 55.000 0.00 0.00 0.00 1.85 F
564 566 0.521242 CAATAACGACCGCTTGCTGC 60.521 55.000 0.00 0.00 38.57 5.25 F
1307 2570 0.528466 GATCGCGTCATCTGCTTCCA 60.528 55.000 5.77 0.00 0.00 3.53 F
1632 2897 0.606604 GCGGGGACACGGATATATGT 59.393 55.000 0.00 0.00 0.00 2.29 F
1684 2951 1.039068 TGGGGAACATGCACAAAGTG 58.961 50.000 0.00 0.00 36.51 3.16 F
1685 2952 1.327303 GGGGAACATGCACAAAGTGA 58.673 50.000 0.58 0.00 35.23 3.41 F
1686 2953 1.686052 GGGGAACATGCACAAAGTGAA 59.314 47.619 0.58 0.00 35.23 3.18 F
3287 4580 2.022718 TTAATGCAGGCCAAGGGTTT 57.977 45.000 5.01 0.00 0.00 3.27 F
4053 5347 2.292267 CAAGATGAATGGAGGAACCCG 58.708 52.381 0.00 0.00 38.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1162 2363 0.247814 GCAACACTCGGATGCAATCG 60.248 55.000 0.00 0.00 46.86 3.34 R
1590 2855 0.322456 TCCTTAAACAGCAGCGCCAT 60.322 50.000 2.29 0.00 0.00 4.40 R
1600 2865 1.002773 GTCCCCGCTTCTCCTTAAACA 59.997 52.381 0.00 0.00 0.00 2.83 R
2128 3419 1.403814 TCTAAGGCTGCTAGCGTCAT 58.596 50.000 10.77 2.28 43.62 3.06 R
2129 3420 1.403814 ATCTAAGGCTGCTAGCGTCA 58.596 50.000 10.77 0.00 43.62 4.35 R
3287 4580 1.328279 TTGTGCTCCAGAGAAGTCGA 58.672 50.000 0.00 0.00 0.00 4.20 R
3429 4723 5.777732 ACCCAATACCTAAAGAAATGCACAA 59.222 36.000 0.00 0.00 0.00 3.33 R
3754 5048 3.988517 CACGAAGTTAGTTCCTTGTCCTC 59.011 47.826 0.00 0.00 41.61 3.71 R
3928 5222 7.940850 ACAAATATGTTAATGTGCCTATGTCC 58.059 34.615 0.00 0.00 35.91 4.02 R
4161 5455 5.080068 GCACGCTTTGACACTAACTAAATC 58.920 41.667 0.00 0.00 0.00 2.17 R
4179 5473 0.645868 GAGACGAGGTATTTGCACGC 59.354 55.000 0.00 0.00 0.00 5.34 R
6417 9507 0.246635 AGATTGCGCTAGTCGGTGTT 59.753 50.000 9.73 0.00 38.94 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.612932 AATCGTGAAGACGTAGGACTAC 57.387 45.455 0.00 0.00 46.20 2.73
22 23 3.044235 TCGTGAAGACGTAGGACTACA 57.956 47.619 9.87 0.00 46.20 2.74
23 24 3.603532 TCGTGAAGACGTAGGACTACAT 58.396 45.455 9.87 0.00 46.20 2.29
24 25 3.620374 TCGTGAAGACGTAGGACTACATC 59.380 47.826 9.87 4.07 46.20 3.06
25 26 3.373130 CGTGAAGACGTAGGACTACATCA 59.627 47.826 8.09 4.82 40.91 3.07
26 27 4.142752 CGTGAAGACGTAGGACTACATCAA 60.143 45.833 8.09 0.00 40.91 2.57
27 28 5.094134 GTGAAGACGTAGGACTACATCAAC 58.906 45.833 8.09 2.82 35.87 3.18
28 29 4.157289 TGAAGACGTAGGACTACATCAACC 59.843 45.833 8.09 0.00 35.87 3.77
29 30 2.681848 AGACGTAGGACTACATCAACCG 59.318 50.000 8.09 0.00 35.87 4.44
30 31 1.133790 ACGTAGGACTACATCAACCGC 59.866 52.381 9.87 0.00 35.87 5.68
31 32 1.133598 CGTAGGACTACATCAACCGCA 59.866 52.381 9.87 0.00 35.87 5.69
32 33 2.223735 CGTAGGACTACATCAACCGCAT 60.224 50.000 9.87 0.00 35.87 4.73
33 34 3.737047 CGTAGGACTACATCAACCGCATT 60.737 47.826 9.87 0.00 35.87 3.56
34 35 2.632377 AGGACTACATCAACCGCATTG 58.368 47.619 0.00 0.00 39.94 2.82
35 36 2.027192 AGGACTACATCAACCGCATTGT 60.027 45.455 0.00 0.00 39.54 2.71
36 37 2.095853 GGACTACATCAACCGCATTGTG 59.904 50.000 0.00 0.00 39.54 3.33
37 38 3.000041 GACTACATCAACCGCATTGTGA 59.000 45.455 0.00 0.00 39.54 3.58
38 39 3.609853 ACTACATCAACCGCATTGTGAT 58.390 40.909 0.00 0.00 39.54 3.06
39 40 4.765273 ACTACATCAACCGCATTGTGATA 58.235 39.130 0.00 0.00 39.54 2.15
40 41 5.182487 ACTACATCAACCGCATTGTGATAA 58.818 37.500 0.00 0.00 39.54 1.75
41 42 4.355543 ACATCAACCGCATTGTGATAAC 57.644 40.909 0.00 0.00 39.54 1.89
42 43 3.181511 ACATCAACCGCATTGTGATAACG 60.182 43.478 0.00 0.00 39.54 3.18
43 44 1.129624 TCAACCGCATTGTGATAACGC 59.870 47.619 0.00 0.00 39.54 4.84
44 45 1.130373 CAACCGCATTGTGATAACGCT 59.870 47.619 0.00 0.00 33.20 5.07
45 46 1.448985 ACCGCATTGTGATAACGCTT 58.551 45.000 0.00 0.00 0.00 4.68
46 47 1.396996 ACCGCATTGTGATAACGCTTC 59.603 47.619 0.00 0.00 0.00 3.86
47 48 1.268032 CCGCATTGTGATAACGCTTCC 60.268 52.381 0.00 0.00 0.00 3.46
48 49 1.592110 CGCATTGTGATAACGCTTCCG 60.592 52.381 0.00 0.00 41.14 4.30
49 50 1.856014 GCATTGTGATAACGCTTCCGC 60.856 52.381 0.00 0.00 38.22 5.54
50 51 1.665679 CATTGTGATAACGCTTCCGCT 59.334 47.619 0.00 0.00 38.22 5.52
51 52 1.075542 TTGTGATAACGCTTCCGCTG 58.924 50.000 0.00 0.00 38.22 5.18
52 53 0.037697 TGTGATAACGCTTCCGCTGT 60.038 50.000 0.00 0.00 38.22 4.40
53 54 0.645868 GTGATAACGCTTCCGCTGTC 59.354 55.000 0.00 0.00 38.22 3.51
54 55 0.800683 TGATAACGCTTCCGCTGTCG 60.801 55.000 0.00 0.00 38.22 4.35
72 73 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
74 75 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
75 76 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
76 77 1.167851 CTACGAGGGTACGTGGACAA 58.832 55.000 0.00 0.00 44.98 3.18
77 78 0.881118 TACGAGGGTACGTGGACAAC 59.119 55.000 0.00 0.00 46.02 3.32
78 79 1.108727 ACGAGGGTACGTGGACAACA 61.109 55.000 0.00 0.00 44.84 3.33
79 80 0.665369 CGAGGGTACGTGGACAACAC 60.665 60.000 0.00 0.00 46.78 3.32
87 88 2.453242 GTGGACAACACTCTCCCCT 58.547 57.895 0.00 0.00 46.72 4.79
88 89 0.321996 GTGGACAACACTCTCCCCTC 59.678 60.000 0.00 0.00 46.72 4.30
89 90 0.191064 TGGACAACACTCTCCCCTCT 59.809 55.000 0.00 0.00 0.00 3.69
90 91 0.899019 GGACAACACTCTCCCCTCTC 59.101 60.000 0.00 0.00 0.00 3.20
91 92 0.528470 GACAACACTCTCCCCTCTCG 59.472 60.000 0.00 0.00 0.00 4.04
92 93 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
93 94 0.969894 CAACACTCTCCCCTCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
94 95 0.969894 AACACTCTCCCCTCTCGTTG 59.030 55.000 0.00 0.00 0.00 4.10
95 96 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
96 97 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
97 98 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
98 99 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
99 100 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
100 101 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
101 102 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
102 103 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
103 104 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
104 105 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
105 106 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
106 107 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
107 108 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
108 109 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
109 110 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
110 111 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
111 112 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
112 113 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
113 114 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
114 115 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
115 116 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
116 117 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
117 118 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
118 119 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
119 120 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
120 121 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
121 122 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
122 123 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
132 133 3.645286 GCGTGTGCGTAGGGAAAA 58.355 55.556 0.00 0.00 40.81 2.29
133 134 1.943293 GCGTGTGCGTAGGGAAAAA 59.057 52.632 0.00 0.00 40.81 1.94
134 135 0.519961 GCGTGTGCGTAGGGAAAAAT 59.480 50.000 0.00 0.00 40.81 1.82
135 136 1.068816 GCGTGTGCGTAGGGAAAAATT 60.069 47.619 0.00 0.00 40.81 1.82
136 137 2.606065 GCGTGTGCGTAGGGAAAAATTT 60.606 45.455 0.00 0.00 40.81 1.82
137 138 3.365164 GCGTGTGCGTAGGGAAAAATTTA 60.365 43.478 0.00 0.00 40.81 1.40
138 139 4.785417 CGTGTGCGTAGGGAAAAATTTAA 58.215 39.130 0.00 0.00 0.00 1.52
139 140 5.213675 CGTGTGCGTAGGGAAAAATTTAAA 58.786 37.500 0.00 0.00 0.00 1.52
140 141 5.859648 CGTGTGCGTAGGGAAAAATTTAAAT 59.140 36.000 0.00 0.00 0.00 1.40
141 142 6.363896 CGTGTGCGTAGGGAAAAATTTAAATT 59.636 34.615 7.64 7.64 0.00 1.82
142 143 7.537991 CGTGTGCGTAGGGAAAAATTTAAATTA 59.462 33.333 13.68 0.00 0.00 1.40
143 144 8.641155 GTGTGCGTAGGGAAAAATTTAAATTAC 58.359 33.333 13.68 5.89 0.00 1.89
144 145 8.578151 TGTGCGTAGGGAAAAATTTAAATTACT 58.422 29.630 13.68 9.57 0.00 2.24
147 148 9.213819 GCGTAGGGAAAAATTTAAATTACTACG 57.786 33.333 29.23 29.23 37.52 3.51
152 153 9.357652 GGGAAAAATTTAAATTACTACGTTCCC 57.642 33.333 22.92 22.92 0.00 3.97
153 154 9.357652 GGAAAAATTTAAATTACTACGTTCCCC 57.642 33.333 13.68 5.51 0.00 4.81
154 155 9.911138 GAAAAATTTAAATTACTACGTTCCCCA 57.089 29.630 13.68 0.00 0.00 4.96
156 157 9.695526 AAAATTTAAATTACTACGTTCCCCAAC 57.304 29.630 13.68 0.00 0.00 3.77
157 158 7.999450 ATTTAAATTACTACGTTCCCCAACA 57.001 32.000 0.00 0.00 32.14 3.33
158 159 7.437793 TTTAAATTACTACGTTCCCCAACAG 57.562 36.000 0.00 0.00 32.14 3.16
159 160 4.628963 AATTACTACGTTCCCCAACAGT 57.371 40.909 0.00 0.00 32.14 3.55
160 161 5.743636 AATTACTACGTTCCCCAACAGTA 57.256 39.130 0.00 0.00 32.14 2.74
161 162 5.743636 ATTACTACGTTCCCCAACAGTAA 57.256 39.130 0.00 0.00 36.32 2.24
162 163 3.672767 ACTACGTTCCCCAACAGTAAG 57.327 47.619 0.00 0.00 32.14 2.34
163 164 3.233507 ACTACGTTCCCCAACAGTAAGA 58.766 45.455 0.00 0.00 32.14 2.10
164 165 2.538512 ACGTTCCCCAACAGTAAGAC 57.461 50.000 0.00 0.00 32.14 3.01
165 166 1.071228 ACGTTCCCCAACAGTAAGACC 59.929 52.381 0.00 0.00 32.14 3.85
166 167 1.071071 CGTTCCCCAACAGTAAGACCA 59.929 52.381 0.00 0.00 32.14 4.02
167 168 2.290071 CGTTCCCCAACAGTAAGACCAT 60.290 50.000 0.00 0.00 32.14 3.55
168 169 3.055675 CGTTCCCCAACAGTAAGACCATA 60.056 47.826 0.00 0.00 32.14 2.74
169 170 4.514401 GTTCCCCAACAGTAAGACCATAG 58.486 47.826 0.00 0.00 32.14 2.23
170 171 4.069312 TCCCCAACAGTAAGACCATAGA 57.931 45.455 0.00 0.00 0.00 1.98
171 172 4.431378 TCCCCAACAGTAAGACCATAGAA 58.569 43.478 0.00 0.00 0.00 2.10
172 173 4.469945 TCCCCAACAGTAAGACCATAGAAG 59.530 45.833 0.00 0.00 0.00 2.85
173 174 4.469945 CCCCAACAGTAAGACCATAGAAGA 59.530 45.833 0.00 0.00 0.00 2.87
174 175 5.420409 CCCAACAGTAAGACCATAGAAGAC 58.580 45.833 0.00 0.00 0.00 3.01
175 176 5.046591 CCCAACAGTAAGACCATAGAAGACA 60.047 44.000 0.00 0.00 0.00 3.41
176 177 6.464222 CCAACAGTAAGACCATAGAAGACAA 58.536 40.000 0.00 0.00 0.00 3.18
177 178 6.591834 CCAACAGTAAGACCATAGAAGACAAG 59.408 42.308 0.00 0.00 0.00 3.16
178 179 6.287589 ACAGTAAGACCATAGAAGACAAGG 57.712 41.667 0.00 0.00 0.00 3.61
179 180 5.780793 ACAGTAAGACCATAGAAGACAAGGT 59.219 40.000 0.00 0.00 34.76 3.50
180 181 6.952358 ACAGTAAGACCATAGAAGACAAGGTA 59.048 38.462 0.00 0.00 31.57 3.08
181 182 7.122948 ACAGTAAGACCATAGAAGACAAGGTAG 59.877 40.741 0.00 0.00 31.57 3.18
182 183 7.339721 CAGTAAGACCATAGAAGACAAGGTAGA 59.660 40.741 0.00 0.00 31.57 2.59
183 184 6.532988 AAGACCATAGAAGACAAGGTAGAC 57.467 41.667 0.00 0.00 31.57 2.59
184 185 5.580998 AGACCATAGAAGACAAGGTAGACA 58.419 41.667 0.00 0.00 31.57 3.41
185 186 5.654650 AGACCATAGAAGACAAGGTAGACAG 59.345 44.000 0.00 0.00 31.57 3.51
186 187 4.712337 ACCATAGAAGACAAGGTAGACAGG 59.288 45.833 0.00 0.00 0.00 4.00
191 192 4.777896 AGAAGACAAGGTAGACAGGCAATA 59.222 41.667 0.00 0.00 0.00 1.90
224 225 5.867174 GGTTAGTCCAAACAAATATTGTGCC 59.133 40.000 0.00 0.00 38.98 5.01
318 319 0.534427 ATCTCGTATGACTCGGCCGA 60.534 55.000 29.03 29.03 0.00 5.54
323 324 0.660595 GTATGACTCGGCCGATGTCG 60.661 60.000 32.89 24.42 42.14 4.35
356 357 4.752101 GGATCTGTTTGGATCTGGTATTCG 59.248 45.833 0.00 0.00 41.15 3.34
358 359 5.160607 TCTGTTTGGATCTGGTATTCGTT 57.839 39.130 0.00 0.00 0.00 3.85
360 361 3.930229 TGTTTGGATCTGGTATTCGTTCG 59.070 43.478 0.00 0.00 0.00 3.95
408 409 5.567138 GATCATTCCGATCCACAACTTTT 57.433 39.130 0.00 0.00 44.25 2.27
409 410 5.954335 GATCATTCCGATCCACAACTTTTT 58.046 37.500 0.00 0.00 44.25 1.94
450 451 4.152402 CGACTTTCTTCATCAACGATGGTT 59.848 41.667 4.24 0.00 40.15 3.67
471 472 1.708993 TTGCTCTGGTGGCTGGTTCT 61.709 55.000 0.00 0.00 0.00 3.01
482 484 0.251165 GCTGGTTCTGTGGGGCTTAA 60.251 55.000 0.00 0.00 0.00 1.85
506 508 2.604011 CGACGACTTCTCGACTGTCTAT 59.396 50.000 6.21 0.00 43.06 1.98
507 509 3.795639 CGACGACTTCTCGACTGTCTATA 59.204 47.826 6.21 0.00 43.06 1.31
508 510 4.317278 CGACGACTTCTCGACTGTCTATAC 60.317 50.000 6.21 0.00 43.06 1.47
512 514 5.747675 CGACTTCTCGACTGTCTATACTACA 59.252 44.000 6.21 0.00 43.06 2.74
513 515 6.291743 CGACTTCTCGACTGTCTATACTACAC 60.292 46.154 6.21 0.00 43.06 2.90
514 516 6.642430 ACTTCTCGACTGTCTATACTACACT 58.358 40.000 6.21 0.00 0.00 3.55
516 518 8.256605 ACTTCTCGACTGTCTATACTACACTAA 58.743 37.037 6.21 0.00 0.00 2.24
517 519 8.645730 TTCTCGACTGTCTATACTACACTAAG 57.354 38.462 6.21 0.00 0.00 2.18
556 558 1.523032 GGAGGGGCAATAACGACCG 60.523 63.158 0.00 0.00 33.27 4.79
564 566 0.521242 CAATAACGACCGCTTGCTGC 60.521 55.000 0.00 0.00 38.57 5.25
569 571 4.395583 GACCGCTTGCTGCAGTGC 62.396 66.667 16.64 8.58 43.06 4.40
577 579 1.542915 CTTGCTGCAGTGCCTATTGTT 59.457 47.619 16.64 0.00 0.00 2.83
581 583 2.032549 GCTGCAGTGCCTATTGTTATCG 60.033 50.000 16.64 0.00 0.00 2.92
643 645 9.787435 ACCTACAATTTTCTTTGTACTGTATCA 57.213 29.630 0.00 0.00 40.25 2.15
774 1975 7.894364 ACTACTTCTAATTACAGGACTCCAGAA 59.106 37.037 0.00 0.00 0.00 3.02
790 1991 5.988310 TCCAGAACGGAGAAGTAATAACA 57.012 39.130 0.00 0.00 39.64 2.41
791 1992 6.540438 TCCAGAACGGAGAAGTAATAACAT 57.460 37.500 0.00 0.00 39.64 2.71
792 1993 7.649533 TCCAGAACGGAGAAGTAATAACATA 57.350 36.000 0.00 0.00 39.64 2.29
794 1995 8.701895 TCCAGAACGGAGAAGTAATAACATAAT 58.298 33.333 0.00 0.00 39.64 1.28
851 2052 1.147376 CCTTCGTCAACACCACCCA 59.853 57.895 0.00 0.00 0.00 4.51
940 2141 2.123468 GCCACCACCCACCAAAGT 60.123 61.111 0.00 0.00 0.00 2.66
1048 2249 3.636231 AGGTAAGCCTGCCGTGCA 61.636 61.111 0.00 0.00 45.05 4.57
1057 2258 2.740438 TGCCGTGCAGCTCTGTTA 59.260 55.556 0.00 0.00 33.32 2.41
1076 2277 7.837863 TCTGTTATTCTGTTATCCTTTCGAGT 58.162 34.615 0.00 0.00 0.00 4.18
1087 2288 7.065803 TGTTATCCTTTCGAGTGGAAATCAATC 59.934 37.037 11.60 0.00 43.40 2.67
1094 2295 3.375299 CGAGTGGAAATCAATCAGGAACC 59.625 47.826 0.00 0.00 40.18 3.62
1101 2302 5.478332 GGAAATCAATCAGGAACCTGTTCTT 59.522 40.000 18.60 9.55 43.96 2.52
1102 2303 6.349694 GGAAATCAATCAGGAACCTGTTCTTC 60.350 42.308 18.60 13.20 43.96 2.87
1103 2304 4.982241 TCAATCAGGAACCTGTTCTTCT 57.018 40.909 18.60 0.00 43.96 2.85
1104 2305 4.645535 TCAATCAGGAACCTGTTCTTCTG 58.354 43.478 18.60 9.26 43.96 3.02
1105 2306 4.347876 TCAATCAGGAACCTGTTCTTCTGA 59.652 41.667 18.60 16.21 43.96 3.27
1106 2307 5.013495 TCAATCAGGAACCTGTTCTTCTGAT 59.987 40.000 18.60 18.27 43.70 2.90
1107 2308 4.543590 TCAGGAACCTGTTCTTCTGATC 57.456 45.455 18.60 0.00 43.96 2.92
1108 2309 4.163427 TCAGGAACCTGTTCTTCTGATCT 58.837 43.478 18.60 0.00 43.96 2.75
1109 2310 4.020751 TCAGGAACCTGTTCTTCTGATCTG 60.021 45.833 18.60 8.49 43.96 2.90
1110 2311 3.006247 GGAACCTGTTCTTCTGATCTGC 58.994 50.000 9.68 0.00 39.45 4.26
1126 2327 1.004560 TGCTCTGCTCCGGTTCTTG 60.005 57.895 0.00 0.00 0.00 3.02
1128 2329 1.078848 CTCTGCTCCGGTTCTTGGG 60.079 63.158 0.00 0.00 0.00 4.12
1139 2340 3.477530 CGGTTCTTGGGTTCTTTCTCTT 58.522 45.455 0.00 0.00 0.00 2.85
1143 2344 5.133941 GTTCTTGGGTTCTTTCTCTTCCTT 58.866 41.667 0.00 0.00 0.00 3.36
1154 2355 5.940470 TCTTTCTCTTCCTTCTTTGGTATGC 59.060 40.000 0.00 0.00 0.00 3.14
1157 2358 2.304761 TCTTCCTTCTTTGGTATGCGGT 59.695 45.455 0.00 0.00 0.00 5.68
1162 2363 2.325583 TCTTTGGTATGCGGTGATCC 57.674 50.000 0.00 0.00 0.00 3.36
1185 2386 2.434884 CATCCGAGTGTTGCCGCT 60.435 61.111 0.00 0.00 0.00 5.52
1186 2387 1.153647 CATCCGAGTGTTGCCGCTA 60.154 57.895 0.00 0.00 0.00 4.26
1188 2389 1.037493 ATCCGAGTGTTGCCGCTATA 58.963 50.000 0.00 0.00 0.00 1.31
1195 2396 4.090066 CGAGTGTTGCCGCTATATGTAATC 59.910 45.833 0.00 0.00 0.00 1.75
1202 2403 4.690748 TGCCGCTATATGTAATCTTTGCTC 59.309 41.667 0.00 0.00 0.00 4.26
1211 2473 3.687698 TGTAATCTTTGCTCGGCCTTTAC 59.312 43.478 0.00 0.00 0.00 2.01
1227 2489 5.993441 GGCCTTTACTATTCCTGCGTTTATA 59.007 40.000 0.00 0.00 0.00 0.98
1228 2490 6.653740 GGCCTTTACTATTCCTGCGTTTATAT 59.346 38.462 0.00 0.00 0.00 0.86
1236 2498 8.993121 ACTATTCCTGCGTTTATATTTCTGATG 58.007 33.333 0.00 0.00 0.00 3.07
1266 2529 5.452302 CGTCTCATACATTGCCGAAAATTTC 59.548 40.000 0.00 0.00 0.00 2.17
1273 2536 3.791973 TTGCCGAAAATTTCTGTGTGT 57.208 38.095 4.09 0.00 0.00 3.72
1279 2542 4.035017 CGAAAATTTCTGTGTGTGTGTCC 58.965 43.478 4.09 0.00 0.00 4.02
1292 2555 1.931172 GTGTGTCCGTATTTGGGATCG 59.069 52.381 0.00 0.00 35.67 3.69
1307 2570 0.528466 GATCGCGTCATCTGCTTCCA 60.528 55.000 5.77 0.00 0.00 3.53
1375 2639 1.886542 GGCCAGGTGGTGACTTAAAAG 59.113 52.381 0.00 0.00 37.57 2.27
1402 2667 9.619316 CATTTTCATGCATGAATTGTGAAATTT 57.381 25.926 35.87 14.10 45.30 1.82
1404 2669 9.452065 TTTTCATGCATGAATTGTGAAATTTTG 57.548 25.926 35.87 4.35 45.30 2.44
1405 2670 7.135089 TCATGCATGAATTGTGAAATTTTGG 57.865 32.000 26.87 0.00 33.08 3.28
1406 2671 6.935208 TCATGCATGAATTGTGAAATTTTGGA 59.065 30.769 26.87 0.00 33.08 3.53
1407 2672 7.444487 TCATGCATGAATTGTGAAATTTTGGAA 59.556 29.630 26.87 0.00 33.08 3.53
1408 2673 7.747155 TGCATGAATTGTGAAATTTTGGAAT 57.253 28.000 0.00 0.00 0.00 3.01
1409 2674 8.167605 TGCATGAATTGTGAAATTTTGGAATT 57.832 26.923 0.00 0.00 37.06 2.17
1410 2675 8.630917 TGCATGAATTGTGAAATTTTGGAATTT 58.369 25.926 0.00 0.00 45.62 1.82
1411 2676 9.465985 GCATGAATTGTGAAATTTTGGAATTTT 57.534 25.926 0.00 0.00 43.61 1.82
1428 2693 2.894763 TTTTTGTCCGACGAAGGAGA 57.105 45.000 0.00 0.67 41.68 3.71
1429 2694 2.894763 TTTTGTCCGACGAAGGAGAA 57.105 45.000 8.80 8.80 41.68 2.87
1430 2695 3.396260 TTTTGTCCGACGAAGGAGAAT 57.604 42.857 12.40 0.00 42.16 2.40
1436 2701 1.066430 CCGACGAAGGAGAATTTGGGA 60.066 52.381 0.00 0.00 0.00 4.37
1437 2702 2.271800 CGACGAAGGAGAATTTGGGAG 58.728 52.381 0.00 0.00 0.00 4.30
1461 2726 2.691409 TTGTCAGATAAAGGAGCCCG 57.309 50.000 0.00 0.00 0.00 6.13
1476 2741 2.815945 CCCGGCTGATGGCTCATCT 61.816 63.158 13.94 0.00 41.06 2.90
1501 2766 9.848172 CTTTATTAGTGTTTGTTTTGAATGTGC 57.152 29.630 0.00 0.00 0.00 4.57
1525 2790 5.185249 CCCTTGTAACAGCTAGAGAACACTA 59.815 44.000 0.00 0.00 0.00 2.74
1528 2793 7.276658 CCTTGTAACAGCTAGAGAACACTATTG 59.723 40.741 0.00 0.00 0.00 1.90
1546 2811 2.405618 TGACAGGGATGCCTATAGCT 57.594 50.000 5.01 0.00 44.23 3.32
1549 2814 2.164624 GACAGGGATGCCTATAGCTACG 59.835 54.545 5.01 0.00 44.23 3.51
1569 2834 8.385858 AGCTACGTTAATTATTTTCTCCGTTTC 58.614 33.333 0.00 0.00 0.00 2.78
1587 2852 5.793457 CCGTTTCTTACCATTTTAAAGAGCG 59.207 40.000 0.00 0.00 33.39 5.03
1590 2855 7.357303 GTTTCTTACCATTTTAAAGAGCGTGA 58.643 34.615 0.00 0.00 31.30 4.35
1595 2860 2.892373 TTTTAAAGAGCGTGATGGCG 57.108 45.000 0.00 0.00 38.18 5.69
1615 2880 1.129437 GCTGCTGTTTAAGGAGAAGCG 59.871 52.381 0.00 0.00 46.96 4.68
1627 2892 1.380785 AGAAGCGGGGACACGGATA 60.381 57.895 0.00 0.00 0.00 2.59
1628 2893 0.759436 AGAAGCGGGGACACGGATAT 60.759 55.000 0.00 0.00 0.00 1.63
1631 2896 0.895530 AGCGGGGACACGGATATATG 59.104 55.000 0.00 0.00 0.00 1.78
1632 2897 0.606604 GCGGGGACACGGATATATGT 59.393 55.000 0.00 0.00 0.00 2.29
1634 2899 2.929592 GCGGGGACACGGATATATGTTC 60.930 54.545 0.00 0.00 0.00 3.18
1641 2908 7.664318 GGGGACACGGATATATGTTCTTTTATT 59.336 37.037 0.00 0.00 0.00 1.40
1646 2913 7.530525 CACGGATATATGTTCTTTTATTGCACG 59.469 37.037 0.00 0.00 0.00 5.34
1647 2914 7.015289 CGGATATATGTTCTTTTATTGCACGG 58.985 38.462 0.00 0.00 0.00 4.94
1661 2928 2.616960 TGCACGGCACATTCTAGTTAG 58.383 47.619 0.00 0.00 31.71 2.34
1677 2944 4.046286 AGTTAGAATTGGGGAACATGCA 57.954 40.909 0.00 0.00 0.00 3.96
1678 2945 3.763897 AGTTAGAATTGGGGAACATGCAC 59.236 43.478 0.00 0.00 0.00 4.57
1679 2946 2.307496 AGAATTGGGGAACATGCACA 57.693 45.000 0.00 0.00 0.00 4.57
1680 2947 2.607499 AGAATTGGGGAACATGCACAA 58.393 42.857 0.00 0.00 0.00 3.33
1681 2948 2.971330 AGAATTGGGGAACATGCACAAA 59.029 40.909 0.00 0.00 0.00 2.83
1682 2949 3.007182 AGAATTGGGGAACATGCACAAAG 59.993 43.478 0.00 0.00 0.00 2.77
1683 2950 1.786937 TTGGGGAACATGCACAAAGT 58.213 45.000 0.00 0.00 0.00 2.66
1684 2951 1.039068 TGGGGAACATGCACAAAGTG 58.961 50.000 0.00 0.00 36.51 3.16
1685 2952 1.327303 GGGGAACATGCACAAAGTGA 58.673 50.000 0.58 0.00 35.23 3.41
1686 2953 1.686052 GGGGAACATGCACAAAGTGAA 59.314 47.619 0.58 0.00 35.23 3.18
1687 2954 2.102252 GGGGAACATGCACAAAGTGAAA 59.898 45.455 0.58 0.00 35.23 2.69
1688 2955 3.244181 GGGGAACATGCACAAAGTGAAAT 60.244 43.478 0.58 0.00 35.23 2.17
1689 2956 4.379652 GGGAACATGCACAAAGTGAAATT 58.620 39.130 0.58 0.00 35.23 1.82
1690 2957 4.815846 GGGAACATGCACAAAGTGAAATTT 59.184 37.500 0.58 0.00 35.23 1.82
1691 2958 5.050159 GGGAACATGCACAAAGTGAAATTTC 60.050 40.000 11.41 11.41 35.23 2.17
1692 2959 5.050159 GGAACATGCACAAAGTGAAATTTCC 60.050 40.000 15.48 7.09 35.23 3.13
1693 2960 4.379652 ACATGCACAAAGTGAAATTTCCC 58.620 39.130 15.48 4.00 35.23 3.97
1694 2961 4.101430 ACATGCACAAAGTGAAATTTCCCT 59.899 37.500 15.48 6.54 35.23 4.20
1695 2962 4.057406 TGCACAAAGTGAAATTTCCCTG 57.943 40.909 15.48 9.40 35.23 4.45
1696 2963 2.802247 GCACAAAGTGAAATTTCCCTGC 59.198 45.455 15.48 6.33 35.23 4.85
1697 2964 3.493176 GCACAAAGTGAAATTTCCCTGCT 60.493 43.478 15.48 5.91 35.23 4.24
1698 2965 4.261994 GCACAAAGTGAAATTTCCCTGCTA 60.262 41.667 15.48 0.00 35.23 3.49
1699 2966 5.738783 GCACAAAGTGAAATTTCCCTGCTAA 60.739 40.000 15.48 0.00 35.23 3.09
1700 2967 6.458210 CACAAAGTGAAATTTCCCTGCTAAT 58.542 36.000 15.48 0.00 35.23 1.73
1701 2968 6.366877 CACAAAGTGAAATTTCCCTGCTAATG 59.633 38.462 15.48 11.95 35.23 1.90
1702 2969 5.665916 AAGTGAAATTTCCCTGCTAATGG 57.334 39.130 15.48 0.00 0.00 3.16
1703 2970 4.934356 AGTGAAATTTCCCTGCTAATGGA 58.066 39.130 15.48 0.00 0.00 3.41
1704 2971 5.522641 AGTGAAATTTCCCTGCTAATGGAT 58.477 37.500 15.48 0.00 0.00 3.41
1755 3023 2.851824 CCGCAGAAAATTATTGTTCCGC 59.148 45.455 0.00 0.00 0.00 5.54
1778 3064 5.406649 CACTTTTTGTTACTGTCCTGCAAA 58.593 37.500 0.00 0.00 0.00 3.68
1945 3233 9.979578 TTTTCATGTTGAATAAAGTGCAATAGT 57.020 25.926 0.00 0.00 36.11 2.12
1999 3288 9.750125 AAAAAGAATGTGTGGTATTTTCTTCTC 57.250 29.630 0.00 0.00 36.03 2.87
2000 3289 8.463930 AAAGAATGTGTGGTATTTTCTTCTCA 57.536 30.769 0.00 0.00 36.03 3.27
2001 3290 7.678947 AGAATGTGTGGTATTTTCTTCTCAG 57.321 36.000 0.00 0.00 0.00 3.35
2002 3291 7.227156 AGAATGTGTGGTATTTTCTTCTCAGT 58.773 34.615 0.00 0.00 0.00 3.41
2003 3292 6.808008 ATGTGTGGTATTTTCTTCTCAGTG 57.192 37.500 0.00 0.00 0.00 3.66
2004 3293 5.680619 TGTGTGGTATTTTCTTCTCAGTGT 58.319 37.500 0.00 0.00 0.00 3.55
2005 3294 6.822442 TGTGTGGTATTTTCTTCTCAGTGTA 58.178 36.000 0.00 0.00 0.00 2.90
2006 3295 7.450074 TGTGTGGTATTTTCTTCTCAGTGTAT 58.550 34.615 0.00 0.00 0.00 2.29
2007 3296 7.936847 TGTGTGGTATTTTCTTCTCAGTGTATT 59.063 33.333 0.00 0.00 0.00 1.89
2086 3377 5.534207 AGCAACATGATTCTTCAAAACCA 57.466 34.783 0.00 0.00 34.96 3.67
2094 3385 9.918630 ACATGATTCTTCAAAACCAGAATTTAG 57.081 29.630 0.00 0.00 39.41 1.85
2163 3454 7.605691 GCAGCCTTAGATACACATTATGAAGAT 59.394 37.037 0.00 0.00 0.00 2.40
2310 3601 4.159135 AGCAAGGTGATGTCCATTTCAATC 59.841 41.667 0.00 0.00 0.00 2.67
2482 3774 3.551082 TGCACTTTTCATTTTGAACAGCG 59.449 39.130 3.88 0.00 37.61 5.18
2511 3803 5.240623 TGAATGTTGTGATGGTGTAGGTTTC 59.759 40.000 0.00 0.00 0.00 2.78
2962 4255 4.880120 CACATTGATCAGAGCACTACCATT 59.120 41.667 0.00 0.00 0.00 3.16
3287 4580 2.022718 TTAATGCAGGCCAAGGGTTT 57.977 45.000 5.01 0.00 0.00 3.27
3356 4649 4.022416 ACCGCAAAGATTCATGCAAGTTTA 60.022 37.500 12.91 0.00 42.68 2.01
3754 5048 9.941325 ATCCTAGAATAGAGCATCAAATTACAG 57.059 33.333 0.00 0.00 42.77 2.74
3777 5071 2.479275 GGACAAGGAACTAACTTCGTGC 59.521 50.000 0.00 0.00 38.49 5.34
4053 5347 2.292267 CAAGATGAATGGAGGAACCCG 58.708 52.381 0.00 0.00 38.00 5.28
4181 5475 6.145534 TCAGTGATTTAGTTAGTGTCAAAGCG 59.854 38.462 0.00 0.00 0.00 4.68
4199 5501 0.914551 CGTGCAAATACCTCGTCTCG 59.085 55.000 0.00 0.00 0.00 4.04
4207 5509 0.098200 TACCTCGTCTCGCGTGAATG 59.902 55.000 13.07 8.75 42.13 2.67
4220 5522 4.855388 TCGCGTGAATGAAACTAGAAGTAC 59.145 41.667 5.77 0.00 0.00 2.73
4224 5526 7.174082 GCGTGAATGAAACTAGAAGTACAATC 58.826 38.462 0.00 0.00 0.00 2.67
4225 5527 7.063544 GCGTGAATGAAACTAGAAGTACAATCT 59.936 37.037 0.00 6.47 0.00 2.40
4242 5544 9.553064 AGTACAATCTTTTAGGCTCAATATCTG 57.447 33.333 0.00 0.00 0.00 2.90
4256 5558 6.313519 TCAATATCTGAACTTAGGTGGCTT 57.686 37.500 0.00 0.00 0.00 4.35
4265 5567 5.307196 TGAACTTAGGTGGCTTCTCTAGTTT 59.693 40.000 0.00 0.00 0.00 2.66
4267 5569 4.082136 ACTTAGGTGGCTTCTCTAGTTTCG 60.082 45.833 0.00 0.00 0.00 3.46
4272 5574 2.492484 TGGCTTCTCTAGTTTCGTCTCC 59.508 50.000 0.00 0.00 0.00 3.71
4298 5772 4.440826 TTAAGGCACAAACTGGTCCTAA 57.559 40.909 0.00 0.00 0.00 2.69
4306 5780 6.149633 GCACAAACTGGTCCTAAACTTAATG 58.850 40.000 0.00 0.00 0.00 1.90
4325 5799 8.507249 ACTTAATGCTCAGATAAATTTATCGCC 58.493 33.333 25.34 17.27 43.30 5.54
4334 5808 9.154847 TCAGATAAATTTATCGCCTATGATGTG 57.845 33.333 25.34 16.68 43.30 3.21
4335 5809 8.939929 CAGATAAATTTATCGCCTATGATGTGT 58.060 33.333 25.34 7.09 43.30 3.72
4562 6036 3.634397 ACCATTCCACTGACATACTGG 57.366 47.619 0.00 0.00 0.00 4.00
4755 6229 1.065926 AGCAGCAATCCAAGATGTCGA 60.066 47.619 0.00 0.00 0.00 4.20
4757 6231 1.325640 CAGCAATCCAAGATGTCGACG 59.674 52.381 11.62 0.00 0.00 5.12
4763 6237 1.513158 CAAGATGTCGACGGAGGCT 59.487 57.895 11.62 0.43 0.00 4.58
4772 6246 0.172578 CGACGGAGGCTGAATACACA 59.827 55.000 0.00 0.00 0.00 3.72
5156 6630 3.397405 AAAAACGCATGGCAAAACAAC 57.603 38.095 0.00 0.00 0.00 3.32
5209 6693 2.156343 AGCTGACGGAACTTCTCAAC 57.844 50.000 0.00 0.00 0.00 3.18
5223 6707 5.059833 ACTTCTCAACTGTGGTCAATCTTC 58.940 41.667 0.00 0.00 0.00 2.87
5322 6807 3.067106 CGCTTGTTTCACTGGTAGATGT 58.933 45.455 0.00 0.00 0.00 3.06
5368 6853 1.831580 AGAGGCTTTGGCTTGATGAC 58.168 50.000 0.00 0.00 38.98 3.06
5470 6955 5.239525 GCTATAATTCATTGGTCGGAGCTTT 59.760 40.000 8.82 0.00 0.00 3.51
5497 6982 4.279169 ACCATGACATACATTATGCCTTGC 59.721 41.667 0.00 0.00 39.79 4.01
5545 7030 2.433604 TGCCAATCCTTTTCTTGTTGCA 59.566 40.909 0.00 0.00 0.00 4.08
5728 7213 3.067742 GGACGATATCGAGGAAGTGGAAA 59.932 47.826 30.75 0.00 43.02 3.13
5809 7294 4.133820 AGTGTTATGCTAAAGTGTGTGCA 58.866 39.130 0.00 0.00 39.83 4.57
5851 7342 4.961099 TGGTGCCATGATTCCATTCATTTA 59.039 37.500 0.00 0.00 34.09 1.40
5941 7432 3.136443 TCCCCGCTCATGAAACTATGAAT 59.864 43.478 0.00 0.00 36.69 2.57
5947 7438 6.190264 CGCTCATGAAACTATGAATGAACAG 58.810 40.000 0.00 0.00 36.69 3.16
5958 7449 8.939201 ACTATGAATGAACAGTAGTTGATCTG 57.061 34.615 0.00 0.00 38.30 2.90
5959 7450 6.674694 ATGAATGAACAGTAGTTGATCTGC 57.325 37.500 0.00 0.00 38.30 4.26
6052 7543 8.103305 TCTATCTTTCTTGCTGATAGGTTTTGT 58.897 33.333 0.00 0.00 39.76 2.83
6061 7565 4.142600 GCTGATAGGTTTTGTTAGCCTGTG 60.143 45.833 0.00 0.00 34.07 3.66
6089 7593 6.246449 CGCTGTTTTCTGTATCTTGATTCAG 58.754 40.000 9.90 9.90 0.00 3.02
6163 7667 3.380479 AGCAACGCTTGTAGTCTTGTA 57.620 42.857 0.00 0.00 33.89 2.41
6166 7670 4.863131 AGCAACGCTTGTAGTCTTGTATAC 59.137 41.667 0.00 0.00 33.89 1.47
6173 7677 8.440833 ACGCTTGTAGTCTTGTATACAATTTTC 58.559 33.333 18.35 9.33 40.19 2.29
6192 7696 4.712122 TTCTTTGCGAAAAGTCCAAAGT 57.288 36.364 15.58 0.00 39.95 2.66
6232 7736 8.843262 AGTACAAACCCTTACAAATACACTTTC 58.157 33.333 0.00 0.00 0.00 2.62
6248 9166 9.893305 AATACACTTTCGTAGAAATTGGAAAAG 57.107 29.630 14.35 0.00 45.90 2.27
6332 9422 0.508641 CAAAGTCGTTGCCGTCTCTG 59.491 55.000 0.00 0.00 31.23 3.35
6348 9438 1.819288 CTCTGGGCTTTCGTCTCAGTA 59.181 52.381 0.00 0.00 0.00 2.74
6349 9439 1.819288 TCTGGGCTTTCGTCTCAGTAG 59.181 52.381 0.00 0.00 0.00 2.57
6357 9447 4.551388 CTTTCGTCTCAGTAGAGCAAACT 58.449 43.478 0.00 0.00 41.81 2.66
6359 9449 5.700722 TTCGTCTCAGTAGAGCAAACTTA 57.299 39.130 0.00 0.00 41.81 2.24
6367 9457 7.817962 TCTCAGTAGAGCAAACTTATTTACACC 59.182 37.037 0.00 0.00 41.81 4.16
6394 9484 2.076863 CTTCTAGAAGCAACGGTTGGG 58.923 52.381 19.23 0.00 0.00 4.12
6398 9488 1.172812 AGAAGCAACGGTTGGGAAGC 61.173 55.000 21.37 7.45 0.00 3.86
6400 9490 2.909965 GCAACGGTTGGGAAGCCA 60.910 61.111 21.37 0.00 0.00 4.75
6406 9496 1.439353 CGGTTGGGAAGCCATCGATG 61.439 60.000 18.76 18.76 0.00 3.84
6409 9499 2.639065 GTTGGGAAGCCATCGATGTAA 58.361 47.619 23.27 4.95 0.00 2.41
6417 9507 3.950397 AGCCATCGATGTAAACCAGAAA 58.050 40.909 23.27 0.00 0.00 2.52
6419 9509 4.156008 AGCCATCGATGTAAACCAGAAAAC 59.844 41.667 23.27 0.00 0.00 2.43
6422 9512 5.390613 CATCGATGTAAACCAGAAAACACC 58.609 41.667 17.50 0.00 0.00 4.16
6423 9513 3.495377 TCGATGTAAACCAGAAAACACCG 59.505 43.478 0.00 0.00 29.97 4.94
6426 9516 3.876341 TGTAAACCAGAAAACACCGACT 58.124 40.909 0.00 0.00 0.00 4.18
6427 9517 5.021033 TGTAAACCAGAAAACACCGACTA 57.979 39.130 0.00 0.00 0.00 2.59
6437 9527 1.100510 ACACCGACTAGCGCAATCTA 58.899 50.000 11.47 0.00 39.11 1.98
6438 9528 1.681793 ACACCGACTAGCGCAATCTAT 59.318 47.619 11.47 0.00 39.11 1.98
6439 9529 2.054363 CACCGACTAGCGCAATCTATG 58.946 52.381 11.47 1.14 39.11 2.23
6443 9533 3.188667 CCGACTAGCGCAATCTATGTAGA 59.811 47.826 11.47 0.00 39.11 2.59
6449 9539 8.438676 ACTAGCGCAATCTATGTAGAAAAATT 57.561 30.769 11.47 0.00 35.69 1.82
6451 9541 5.973565 AGCGCAATCTATGTAGAAAAATTGC 59.026 36.000 11.47 12.67 39.44 3.56
6452 9542 5.173854 GCGCAATCTATGTAGAAAAATTGCC 59.826 40.000 0.30 8.43 39.56 4.52
6463 9554 1.463674 AAAATTGCCGCCCTGAGTAG 58.536 50.000 0.00 0.00 0.00 2.57
6469 9560 0.321298 GCCGCCCTGAGTAGAAAACA 60.321 55.000 0.00 0.00 0.00 2.83
6482 9573 3.601443 AGAAAACATCTGAGAGGACCG 57.399 47.619 0.00 0.00 36.88 4.79
6487 9580 2.096248 ACATCTGAGAGGACCGAACTC 58.904 52.381 0.00 8.67 35.20 3.01
6502 9595 0.471211 AACTCCTCGGTTCCCACAGA 60.471 55.000 0.00 0.00 0.00 3.41
6504 9597 1.152419 TCCTCGGTTCCCACAGACA 60.152 57.895 0.00 0.00 0.00 3.41
6505 9598 1.185618 TCCTCGGTTCCCACAGACAG 61.186 60.000 0.00 0.00 0.00 3.51
6509 9602 0.038159 CGGTTCCCACAGACAGAGTC 60.038 60.000 0.00 0.00 0.00 3.36
6516 9609 0.244994 CACAGACAGAGTCGGGGAAG 59.755 60.000 2.63 0.00 33.17 3.46
6535 9628 0.452585 GACTACTCTCACACGCTCCC 59.547 60.000 0.00 0.00 0.00 4.30
6570 9663 1.595382 GGCCAACCTCCATCGATCG 60.595 63.158 9.36 9.36 0.00 3.69
6580 9673 1.032794 CCATCGATCGGAACTGGAGA 58.967 55.000 16.41 0.00 0.00 3.71
6581 9674 1.615883 CCATCGATCGGAACTGGAGAT 59.384 52.381 16.41 0.00 0.00 2.75
6582 9675 2.608998 CCATCGATCGGAACTGGAGATG 60.609 54.545 16.41 7.89 35.22 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.959596 TGATGTAGTCCTACGTCTTCAC 57.040 45.455 21.29 3.00 46.78 3.18
5 6 4.157289 GGTTGATGTAGTCCTACGTCTTCA 59.843 45.833 21.29 10.06 46.78 3.02
6 7 4.670347 GGTTGATGTAGTCCTACGTCTTC 58.330 47.826 21.29 15.34 46.78 2.87
7 8 3.128242 CGGTTGATGTAGTCCTACGTCTT 59.872 47.826 21.29 0.26 46.78 3.01
8 9 2.681848 CGGTTGATGTAGTCCTACGTCT 59.318 50.000 21.29 2.17 46.78 4.18
9 10 2.793933 GCGGTTGATGTAGTCCTACGTC 60.794 54.545 16.35 16.35 46.81 4.34
10 11 1.133790 GCGGTTGATGTAGTCCTACGT 59.866 52.381 0.00 0.00 38.85 3.57
11 12 1.133598 TGCGGTTGATGTAGTCCTACG 59.866 52.381 0.38 0.00 38.85 3.51
12 13 2.953466 TGCGGTTGATGTAGTCCTAC 57.047 50.000 0.00 0.00 36.63 3.18
13 14 3.196901 ACAATGCGGTTGATGTAGTCCTA 59.803 43.478 8.45 0.00 40.37 2.94
14 15 2.027192 ACAATGCGGTTGATGTAGTCCT 60.027 45.455 8.45 0.00 40.37 3.85
15 16 2.095853 CACAATGCGGTTGATGTAGTCC 59.904 50.000 8.45 0.00 40.37 3.85
16 17 3.000041 TCACAATGCGGTTGATGTAGTC 59.000 45.455 8.45 0.00 40.37 2.59
17 18 3.052455 TCACAATGCGGTTGATGTAGT 57.948 42.857 8.45 0.00 40.37 2.73
18 19 5.501715 GTTATCACAATGCGGTTGATGTAG 58.498 41.667 8.45 0.00 40.37 2.74
19 20 4.033472 CGTTATCACAATGCGGTTGATGTA 59.967 41.667 8.45 0.00 40.37 2.29
20 21 3.181511 CGTTATCACAATGCGGTTGATGT 60.182 43.478 8.45 0.00 40.37 3.06
21 22 3.353524 CGTTATCACAATGCGGTTGATG 58.646 45.455 8.45 4.08 40.37 3.07
22 23 2.223249 GCGTTATCACAATGCGGTTGAT 60.223 45.455 8.45 2.52 40.37 2.57
23 24 1.129624 GCGTTATCACAATGCGGTTGA 59.870 47.619 8.45 0.00 40.37 3.18
24 25 1.130373 AGCGTTATCACAATGCGGTTG 59.870 47.619 0.57 0.57 43.64 3.77
25 26 1.448985 AGCGTTATCACAATGCGGTT 58.551 45.000 0.00 0.00 37.26 4.44
26 27 1.396996 GAAGCGTTATCACAATGCGGT 59.603 47.619 0.00 0.00 37.26 5.68
27 28 1.268032 GGAAGCGTTATCACAATGCGG 60.268 52.381 0.00 0.00 37.26 5.69
28 29 1.592110 CGGAAGCGTTATCACAATGCG 60.592 52.381 0.00 0.00 37.26 4.73
29 30 2.091152 CGGAAGCGTTATCACAATGC 57.909 50.000 0.00 0.00 0.00 3.56
47 48 2.403987 CCTCGTAGACCGACAGCG 59.596 66.667 0.00 0.00 41.60 5.18
48 49 0.745845 TACCCTCGTAGACCGACAGC 60.746 60.000 0.00 0.00 41.60 4.40
49 50 1.012841 GTACCCTCGTAGACCGACAG 58.987 60.000 0.00 0.00 41.60 3.51
50 51 0.740868 CGTACCCTCGTAGACCGACA 60.741 60.000 0.00 0.00 41.60 4.35
51 52 0.741221 ACGTACCCTCGTAGACCGAC 60.741 60.000 0.00 0.00 41.60 4.79
52 53 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
53 54 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
54 55 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
55 56 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
56 57 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
57 58 1.135575 GTTGTCCACGTACCCTCGTAG 60.136 57.143 0.00 0.00 42.27 3.51
58 59 0.881118 GTTGTCCACGTACCCTCGTA 59.119 55.000 0.00 0.00 42.27 3.43
59 60 1.108727 TGTTGTCCACGTACCCTCGT 61.109 55.000 0.00 0.00 45.10 4.18
60 61 0.665369 GTGTTGTCCACGTACCCTCG 60.665 60.000 0.00 0.00 33.61 4.63
61 62 3.206090 GTGTTGTCCACGTACCCTC 57.794 57.895 0.00 0.00 33.61 4.30
66 67 4.748514 AGGGGAGAGTGTTGTCCACGTA 62.749 54.545 0.00 0.00 44.77 3.57
68 69 1.472662 AGGGGAGAGTGTTGTCCACG 61.473 60.000 0.00 0.00 44.77 4.94
69 70 0.321996 GAGGGGAGAGTGTTGTCCAC 59.678 60.000 0.00 0.00 40.47 4.02
70 71 0.191064 AGAGGGGAGAGTGTTGTCCA 59.809 55.000 0.00 0.00 38.50 4.02
71 72 0.899019 GAGAGGGGAGAGTGTTGTCC 59.101 60.000 0.00 0.00 36.03 4.02
72 73 0.528470 CGAGAGGGGAGAGTGTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
73 74 0.178958 ACGAGAGGGGAGAGTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
74 75 0.969894 AACGAGAGGGGAGAGTGTTG 59.030 55.000 0.00 0.00 0.00 3.33
75 76 0.969894 CAACGAGAGGGGAGAGTGTT 59.030 55.000 0.00 0.00 0.00 3.32
76 77 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
77 78 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
78 79 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
79 80 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
80 81 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
81 82 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
82 83 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
83 84 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
84 85 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
85 86 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
86 87 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
87 88 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
88 89 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
89 90 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
90 91 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
91 92 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
92 93 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
93 94 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
94 95 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
95 96 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
96 97 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
97 98 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
98 99 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
99 100 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
100 101 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
101 102 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
102 103 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
103 104 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
104 105 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
105 106 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
106 107 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
107 108 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
108 109 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
109 110 1.421410 CCCTACGCACACGCAAGATC 61.421 60.000 0.00 0.00 45.53 2.75
110 111 1.447838 CCCTACGCACACGCAAGAT 60.448 57.895 0.00 0.00 45.53 2.40
111 112 2.048597 CCCTACGCACACGCAAGA 60.049 61.111 0.00 0.00 45.53 3.02
112 113 1.225376 TTTCCCTACGCACACGCAAG 61.225 55.000 0.00 0.00 45.53 4.01
113 114 0.814410 TTTTCCCTACGCACACGCAA 60.814 50.000 0.00 0.00 45.53 4.85
114 115 0.814410 TTTTTCCCTACGCACACGCA 60.814 50.000 0.00 0.00 45.53 5.24
115 116 0.519961 ATTTTTCCCTACGCACACGC 59.480 50.000 0.00 0.00 45.53 5.34
117 118 7.646446 AATTTAAATTTTTCCCTACGCACAC 57.354 32.000 7.64 0.00 0.00 3.82
118 119 8.578151 AGTAATTTAAATTTTTCCCTACGCACA 58.422 29.630 18.14 0.00 0.00 4.57
119 120 8.975410 AGTAATTTAAATTTTTCCCTACGCAC 57.025 30.769 18.14 6.39 0.00 5.34
121 122 9.213819 CGTAGTAATTTAAATTTTTCCCTACGC 57.786 33.333 24.08 13.40 0.00 4.42
126 127 9.357652 GGGAACGTAGTAATTTAAATTTTTCCC 57.642 33.333 18.14 20.54 45.00 3.97
127 128 9.357652 GGGGAACGTAGTAATTTAAATTTTTCC 57.642 33.333 18.14 16.98 45.00 3.13
128 129 9.911138 TGGGGAACGTAGTAATTTAAATTTTTC 57.089 29.630 18.14 9.71 45.00 2.29
130 131 9.695526 GTTGGGGAACGTAGTAATTTAAATTTT 57.304 29.630 18.14 10.04 45.00 1.82
131 132 8.858094 TGTTGGGGAACGTAGTAATTTAAATTT 58.142 29.630 18.14 4.71 45.00 1.82
132 133 8.406730 TGTTGGGGAACGTAGTAATTTAAATT 57.593 30.769 17.18 17.18 45.00 1.82
133 134 7.666804 ACTGTTGGGGAACGTAGTAATTTAAAT 59.333 33.333 0.00 0.00 45.00 1.40
134 135 6.997476 ACTGTTGGGGAACGTAGTAATTTAAA 59.003 34.615 0.00 0.00 45.00 1.52
135 136 6.532826 ACTGTTGGGGAACGTAGTAATTTAA 58.467 36.000 0.00 0.00 45.00 1.52
136 137 6.112927 ACTGTTGGGGAACGTAGTAATTTA 57.887 37.500 0.00 0.00 45.00 1.40
137 138 4.976864 ACTGTTGGGGAACGTAGTAATTT 58.023 39.130 0.00 0.00 45.00 1.82
138 139 4.628963 ACTGTTGGGGAACGTAGTAATT 57.371 40.909 0.00 0.00 45.00 1.40
139 140 5.481473 TCTTACTGTTGGGGAACGTAGTAAT 59.519 40.000 4.31 0.00 45.00 1.89
140 141 4.832266 TCTTACTGTTGGGGAACGTAGTAA 59.168 41.667 0.00 0.00 45.00 2.24
141 142 4.218417 GTCTTACTGTTGGGGAACGTAGTA 59.782 45.833 0.00 0.00 45.00 1.82
143 144 3.582780 GTCTTACTGTTGGGGAACGTAG 58.417 50.000 0.00 0.00 0.00 3.51
144 145 2.299867 GGTCTTACTGTTGGGGAACGTA 59.700 50.000 0.00 0.00 0.00 3.57
145 146 1.071228 GGTCTTACTGTTGGGGAACGT 59.929 52.381 0.00 0.00 0.00 3.99
146 147 1.071071 TGGTCTTACTGTTGGGGAACG 59.929 52.381 0.00 0.00 0.00 3.95
147 148 2.943036 TGGTCTTACTGTTGGGGAAC 57.057 50.000 0.00 0.00 0.00 3.62
148 149 4.431378 TCTATGGTCTTACTGTTGGGGAA 58.569 43.478 0.00 0.00 0.00 3.97
149 150 4.069312 TCTATGGTCTTACTGTTGGGGA 57.931 45.455 0.00 0.00 0.00 4.81
150 151 4.469945 TCTTCTATGGTCTTACTGTTGGGG 59.530 45.833 0.00 0.00 0.00 4.96
151 152 5.046591 TGTCTTCTATGGTCTTACTGTTGGG 60.047 44.000 0.00 0.00 0.00 4.12
152 153 6.037786 TGTCTTCTATGGTCTTACTGTTGG 57.962 41.667 0.00 0.00 0.00 3.77
153 154 6.591834 CCTTGTCTTCTATGGTCTTACTGTTG 59.408 42.308 0.00 0.00 0.00 3.33
154 155 6.270231 ACCTTGTCTTCTATGGTCTTACTGTT 59.730 38.462 0.00 0.00 0.00 3.16
155 156 5.780793 ACCTTGTCTTCTATGGTCTTACTGT 59.219 40.000 0.00 0.00 0.00 3.55
156 157 6.287589 ACCTTGTCTTCTATGGTCTTACTG 57.712 41.667 0.00 0.00 0.00 2.74
157 158 7.339976 GTCTACCTTGTCTTCTATGGTCTTACT 59.660 40.741 0.00 0.00 32.74 2.24
158 159 7.122353 TGTCTACCTTGTCTTCTATGGTCTTAC 59.878 40.741 0.00 0.00 32.74 2.34
159 160 7.179966 TGTCTACCTTGTCTTCTATGGTCTTA 58.820 38.462 0.00 0.00 32.74 2.10
160 161 6.017192 TGTCTACCTTGTCTTCTATGGTCTT 58.983 40.000 0.00 0.00 32.74 3.01
161 162 5.580998 TGTCTACCTTGTCTTCTATGGTCT 58.419 41.667 0.00 0.00 32.74 3.85
162 163 5.163499 CCTGTCTACCTTGTCTTCTATGGTC 60.163 48.000 0.00 0.00 32.74 4.02
163 164 4.712337 CCTGTCTACCTTGTCTTCTATGGT 59.288 45.833 0.00 0.00 35.05 3.55
164 165 4.442192 GCCTGTCTACCTTGTCTTCTATGG 60.442 50.000 0.00 0.00 0.00 2.74
165 166 4.160439 TGCCTGTCTACCTTGTCTTCTATG 59.840 45.833 0.00 0.00 0.00 2.23
166 167 4.353777 TGCCTGTCTACCTTGTCTTCTAT 58.646 43.478 0.00 0.00 0.00 1.98
167 168 3.774734 TGCCTGTCTACCTTGTCTTCTA 58.225 45.455 0.00 0.00 0.00 2.10
168 169 2.609747 TGCCTGTCTACCTTGTCTTCT 58.390 47.619 0.00 0.00 0.00 2.85
169 170 3.402628 TTGCCTGTCTACCTTGTCTTC 57.597 47.619 0.00 0.00 0.00 2.87
170 171 4.777896 TCTATTGCCTGTCTACCTTGTCTT 59.222 41.667 0.00 0.00 0.00 3.01
171 172 4.353777 TCTATTGCCTGTCTACCTTGTCT 58.646 43.478 0.00 0.00 0.00 3.41
172 173 4.737855 TCTATTGCCTGTCTACCTTGTC 57.262 45.455 0.00 0.00 0.00 3.18
173 174 5.700402 AATCTATTGCCTGTCTACCTTGT 57.300 39.130 0.00 0.00 0.00 3.16
174 175 9.429359 CTATTAATCTATTGCCTGTCTACCTTG 57.571 37.037 0.00 0.00 0.00 3.61
175 176 8.598041 CCTATTAATCTATTGCCTGTCTACCTT 58.402 37.037 0.00 0.00 0.00 3.50
176 177 7.735321 ACCTATTAATCTATTGCCTGTCTACCT 59.265 37.037 0.00 0.00 0.00 3.08
177 178 7.908453 ACCTATTAATCTATTGCCTGTCTACC 58.092 38.462 0.00 0.00 0.00 3.18
180 181 9.160412 ACTAACCTATTAATCTATTGCCTGTCT 57.840 33.333 0.00 0.00 0.00 3.41
181 182 9.425577 GACTAACCTATTAATCTATTGCCTGTC 57.574 37.037 0.00 0.00 0.00 3.51
182 183 8.376270 GGACTAACCTATTAATCTATTGCCTGT 58.624 37.037 0.00 0.00 35.41 4.00
183 184 8.375506 TGGACTAACCTATTAATCTATTGCCTG 58.624 37.037 0.00 0.00 39.86 4.85
184 185 8.506196 TGGACTAACCTATTAATCTATTGCCT 57.494 34.615 0.00 0.00 39.86 4.75
185 186 9.569122 TTTGGACTAACCTATTAATCTATTGCC 57.431 33.333 0.00 0.00 39.86 4.52
297 298 0.241481 GGCCGAGTCATACGAGATCC 59.759 60.000 0.00 0.00 0.00 3.36
323 324 1.672881 CAAACAGATCCATCGAAGGCC 59.327 52.381 0.65 0.00 0.00 5.19
326 327 4.510711 CAGATCCAAACAGATCCATCGAAG 59.489 45.833 0.00 0.00 43.14 3.79
329 330 3.136763 CCAGATCCAAACAGATCCATCG 58.863 50.000 0.00 0.00 43.14 3.84
331 332 5.919348 ATACCAGATCCAAACAGATCCAT 57.081 39.130 0.00 0.00 43.14 3.41
333 334 4.752101 CGAATACCAGATCCAAACAGATCC 59.248 45.833 0.00 0.00 43.14 3.36
356 357 5.789512 TGTAAACACTCAAACGAAAACGAAC 59.210 36.000 0.00 0.00 0.00 3.95
358 359 5.446206 CCTGTAAACACTCAAACGAAAACGA 60.446 40.000 0.00 0.00 0.00 3.85
360 361 5.633927 ACCTGTAAACACTCAAACGAAAAC 58.366 37.500 0.00 0.00 0.00 2.43
409 410 0.958091 CGTGGATCACCCTGCAAAAA 59.042 50.000 0.00 0.00 35.38 1.94
410 411 0.109532 TCGTGGATCACCCTGCAAAA 59.890 50.000 0.00 0.00 35.38 2.44
411 412 0.605319 GTCGTGGATCACCCTGCAAA 60.605 55.000 0.00 0.00 35.38 3.68
412 413 1.003839 GTCGTGGATCACCCTGCAA 60.004 57.895 0.00 0.00 35.38 4.08
413 414 1.480212 AAGTCGTGGATCACCCTGCA 61.480 55.000 0.00 0.00 35.38 4.41
414 415 0.321653 AAAGTCGTGGATCACCCTGC 60.322 55.000 0.00 0.00 35.38 4.85
415 416 1.276421 AGAAAGTCGTGGATCACCCTG 59.724 52.381 0.00 0.00 35.38 4.45
416 417 1.645710 AGAAAGTCGTGGATCACCCT 58.354 50.000 0.00 0.00 35.38 4.34
417 418 2.289444 TGAAGAAAGTCGTGGATCACCC 60.289 50.000 0.00 0.00 34.81 4.61
418 419 3.040147 TGAAGAAAGTCGTGGATCACC 57.960 47.619 0.00 0.00 0.00 4.02
419 420 4.245660 TGATGAAGAAAGTCGTGGATCAC 58.754 43.478 0.00 0.00 0.00 3.06
420 421 4.535526 TGATGAAGAAAGTCGTGGATCA 57.464 40.909 0.00 0.00 0.00 2.92
421 422 4.201628 CGTTGATGAAGAAAGTCGTGGATC 60.202 45.833 0.00 0.00 0.00 3.36
422 423 3.679980 CGTTGATGAAGAAAGTCGTGGAT 59.320 43.478 0.00 0.00 0.00 3.41
423 424 3.057019 CGTTGATGAAGAAAGTCGTGGA 58.943 45.455 0.00 0.00 0.00 4.02
424 425 3.057019 TCGTTGATGAAGAAAGTCGTGG 58.943 45.455 0.00 0.00 0.00 4.94
425 426 4.434725 CCATCGTTGATGAAGAAAGTCGTG 60.435 45.833 8.32 0.00 42.09 4.35
450 451 2.113774 CCAGCCACCAGAGCAACA 59.886 61.111 0.00 0.00 0.00 3.33
471 472 1.301087 CGTCGTGTTAAGCCCCACA 60.301 57.895 0.00 0.00 0.00 4.17
482 484 0.235144 CAGTCGAGAAGTCGTCGTGT 59.765 55.000 0.00 0.00 46.85 4.49
506 508 4.708421 AGCCGGACAAATCTTAGTGTAGTA 59.292 41.667 5.05 0.00 0.00 1.82
507 509 3.514309 AGCCGGACAAATCTTAGTGTAGT 59.486 43.478 5.05 0.00 0.00 2.73
508 510 4.113354 GAGCCGGACAAATCTTAGTGTAG 58.887 47.826 5.05 0.00 0.00 2.74
512 514 1.134788 CGGAGCCGGACAAATCTTAGT 60.135 52.381 5.05 0.00 35.56 2.24
513 515 1.571919 CGGAGCCGGACAAATCTTAG 58.428 55.000 5.05 0.00 35.56 2.18
514 516 3.752796 CGGAGCCGGACAAATCTTA 57.247 52.632 5.05 0.00 35.56 2.10
556 558 0.179145 CAATAGGCACTGCAGCAAGC 60.179 55.000 15.27 15.51 41.52 4.01
564 566 3.990469 CCTAGCGATAACAATAGGCACTG 59.010 47.826 0.00 0.00 41.52 3.66
569 571 4.602340 ACCACCTAGCGATAACAATAGG 57.398 45.455 0.00 0.00 40.58 2.57
577 579 4.054780 GTTCATGAACCACCTAGCGATA 57.945 45.455 25.26 0.00 35.36 2.92
697 1897 5.938322 CGCAAGCCTCAATTACTTCTTTAA 58.062 37.500 0.00 0.00 0.00 1.52
813 2014 2.910994 GGGGCATGATCAGGCTGC 60.911 66.667 29.25 19.97 38.32 5.25
851 2052 2.123425 TAGGAGGAAGCCGGCGAT 60.123 61.111 23.20 15.02 0.00 4.58
940 2141 2.044758 GGGGAGGGCGTTAAGAATAGA 58.955 52.381 0.00 0.00 0.00 1.98
1044 2245 5.007136 GGATAACAGAATAACAGAGCTGCAC 59.993 44.000 1.02 0.00 31.74 4.57
1045 2246 5.104776 AGGATAACAGAATAACAGAGCTGCA 60.105 40.000 1.02 0.00 31.74 4.41
1046 2247 5.363939 AGGATAACAGAATAACAGAGCTGC 58.636 41.667 0.00 0.00 31.74 5.25
1047 2248 7.254252 CGAAAGGATAACAGAATAACAGAGCTG 60.254 40.741 0.00 0.00 34.65 4.24
1048 2249 6.758886 CGAAAGGATAACAGAATAACAGAGCT 59.241 38.462 0.00 0.00 0.00 4.09
1049 2250 6.757010 TCGAAAGGATAACAGAATAACAGAGC 59.243 38.462 0.00 0.00 0.00 4.09
1050 2251 7.976734 ACTCGAAAGGATAACAGAATAACAGAG 59.023 37.037 0.00 0.00 0.00 3.35
1051 2252 7.759886 CACTCGAAAGGATAACAGAATAACAGA 59.240 37.037 0.00 0.00 0.00 3.41
1052 2253 7.010552 CCACTCGAAAGGATAACAGAATAACAG 59.989 40.741 0.00 0.00 0.00 3.16
1053 2254 6.816640 CCACTCGAAAGGATAACAGAATAACA 59.183 38.462 0.00 0.00 0.00 2.41
1054 2255 7.039882 TCCACTCGAAAGGATAACAGAATAAC 58.960 38.462 1.54 0.00 0.00 1.89
1055 2256 7.177832 TCCACTCGAAAGGATAACAGAATAA 57.822 36.000 1.54 0.00 0.00 1.40
1056 2257 6.785337 TCCACTCGAAAGGATAACAGAATA 57.215 37.500 1.54 0.00 0.00 1.75
1057 2258 5.677319 TCCACTCGAAAGGATAACAGAAT 57.323 39.130 1.54 0.00 0.00 2.40
1076 2277 4.387026 ACAGGTTCCTGATTGATTTCCA 57.613 40.909 23.45 0.00 37.49 3.53
1087 2288 4.252073 CAGATCAGAAGAACAGGTTCCTG 58.748 47.826 16.25 16.25 40.33 3.86
1094 2295 2.931325 GCAGAGCAGATCAGAAGAACAG 59.069 50.000 0.00 0.00 0.00 3.16
1101 2302 1.390383 CCGGAGCAGAGCAGATCAGA 61.390 60.000 0.00 0.00 0.00 3.27
1102 2303 1.067749 CCGGAGCAGAGCAGATCAG 59.932 63.158 0.00 0.00 0.00 2.90
1103 2304 1.260538 AACCGGAGCAGAGCAGATCA 61.261 55.000 9.46 0.00 0.00 2.92
1104 2305 0.529555 GAACCGGAGCAGAGCAGATC 60.530 60.000 9.46 0.00 0.00 2.75
1105 2306 0.975040 AGAACCGGAGCAGAGCAGAT 60.975 55.000 9.46 0.00 0.00 2.90
1106 2307 1.188219 AAGAACCGGAGCAGAGCAGA 61.188 55.000 9.46 0.00 0.00 4.26
1107 2308 1.018226 CAAGAACCGGAGCAGAGCAG 61.018 60.000 9.46 0.00 0.00 4.24
1108 2309 1.004560 CAAGAACCGGAGCAGAGCA 60.005 57.895 9.46 0.00 0.00 4.26
1109 2310 1.743252 CCAAGAACCGGAGCAGAGC 60.743 63.158 9.46 0.00 0.00 4.09
1110 2311 1.078848 CCCAAGAACCGGAGCAGAG 60.079 63.158 9.46 0.00 0.00 3.35
1126 2327 4.520874 CCAAAGAAGGAAGAGAAAGAACCC 59.479 45.833 0.00 0.00 0.00 4.11
1128 2329 7.574030 GCATACCAAAGAAGGAAGAGAAAGAAC 60.574 40.741 0.00 0.00 0.00 3.01
1139 2340 1.626321 TCACCGCATACCAAAGAAGGA 59.374 47.619 0.00 0.00 0.00 3.36
1143 2344 2.325583 GGATCACCGCATACCAAAGA 57.674 50.000 0.00 0.00 0.00 2.52
1162 2363 0.247814 GCAACACTCGGATGCAATCG 60.248 55.000 0.00 0.00 46.86 3.34
1185 2386 5.483685 AGGCCGAGCAAAGATTACATATA 57.516 39.130 0.00 0.00 0.00 0.86
1186 2387 4.357918 AGGCCGAGCAAAGATTACATAT 57.642 40.909 0.00 0.00 0.00 1.78
1188 2389 2.717639 AGGCCGAGCAAAGATTACAT 57.282 45.000 0.00 0.00 0.00 2.29
1195 2396 3.312697 GGAATAGTAAAGGCCGAGCAAAG 59.687 47.826 0.00 0.00 0.00 2.77
1202 2403 1.217882 CGCAGGAATAGTAAAGGCCG 58.782 55.000 0.00 0.00 0.00 6.13
1211 2473 9.208022 TCATCAGAAATATAAACGCAGGAATAG 57.792 33.333 0.00 0.00 0.00 1.73
1250 2512 4.050553 CACACAGAAATTTTCGGCAATGT 58.949 39.130 8.88 4.27 34.02 2.71
1266 2529 2.223144 CCAAATACGGACACACACACAG 59.777 50.000 0.00 0.00 0.00 3.66
1273 2536 1.741055 GCGATCCCAAATACGGACACA 60.741 52.381 0.00 0.00 30.39 3.72
1279 2542 1.455786 GATGACGCGATCCCAAATACG 59.544 52.381 15.93 0.00 0.00 3.06
1292 2555 0.671781 AGTGTGGAAGCAGATGACGC 60.672 55.000 0.00 0.00 0.00 5.19
1307 2570 6.765989 GGGGCTGAAAAGAAAATTAAAAGTGT 59.234 34.615 0.00 0.00 0.00 3.55
1409 2674 2.894763 TCTCCTTCGTCGGACAAAAA 57.105 45.000 9.10 0.00 0.00 1.94
1410 2675 2.894763 TTCTCCTTCGTCGGACAAAA 57.105 45.000 9.10 1.12 0.00 2.44
1411 2676 3.396260 AATTCTCCTTCGTCGGACAAA 57.604 42.857 9.10 0.00 0.00 2.83
1412 2677 3.064207 CAAATTCTCCTTCGTCGGACAA 58.936 45.455 9.10 1.39 0.00 3.18
1413 2678 2.611971 CCAAATTCTCCTTCGTCGGACA 60.612 50.000 9.10 0.00 0.00 4.02
1414 2679 2.000447 CCAAATTCTCCTTCGTCGGAC 59.000 52.381 0.00 0.00 0.00 4.79
1415 2680 1.066430 CCCAAATTCTCCTTCGTCGGA 60.066 52.381 0.00 0.00 0.00 4.55
1416 2681 1.066430 TCCCAAATTCTCCTTCGTCGG 60.066 52.381 0.00 0.00 0.00 4.79
1417 2682 2.271800 CTCCCAAATTCTCCTTCGTCG 58.728 52.381 0.00 0.00 0.00 5.12
1418 2683 3.336138 ACTCCCAAATTCTCCTTCGTC 57.664 47.619 0.00 0.00 0.00 4.20
1419 2684 3.790089 AACTCCCAAATTCTCCTTCGT 57.210 42.857 0.00 0.00 0.00 3.85
1420 2685 5.453567 AAAAACTCCCAAATTCTCCTTCG 57.546 39.130 0.00 0.00 0.00 3.79
1451 2716 2.273449 CATCAGCCGGGCTCCTTT 59.727 61.111 20.97 0.73 36.40 3.11
1461 2726 5.180868 CACTAATAAAGATGAGCCATCAGCC 59.819 44.000 14.93 0.00 43.03 4.85
1476 2741 8.821894 GGCACATTCAAAACAAACACTAATAAA 58.178 29.630 0.00 0.00 0.00 1.40
1496 2761 2.571653 TCTAGCTGTTACAAGGGCACAT 59.428 45.455 0.00 0.00 0.00 3.21
1499 2764 2.536066 TCTCTAGCTGTTACAAGGGCA 58.464 47.619 0.00 0.00 0.00 5.36
1501 2766 4.021016 AGTGTTCTCTAGCTGTTACAAGGG 60.021 45.833 0.00 0.00 0.00 3.95
1525 2790 3.254960 AGCTATAGGCATCCCTGTCAAT 58.745 45.455 1.04 0.00 42.90 2.57
1528 2793 2.164624 CGTAGCTATAGGCATCCCTGTC 59.835 54.545 0.00 0.00 42.90 3.51
1565 2830 7.357303 TCACGCTCTTTAAAATGGTAAGAAAC 58.643 34.615 0.00 0.00 0.00 2.78
1569 2834 6.258160 CCATCACGCTCTTTAAAATGGTAAG 58.742 40.000 5.12 0.00 0.00 2.34
1587 2852 0.521291 TTAAACAGCAGCGCCATCAC 59.479 50.000 2.29 0.00 0.00 3.06
1590 2855 0.322456 TCCTTAAACAGCAGCGCCAT 60.322 50.000 2.29 0.00 0.00 4.40
1595 2860 1.129437 CGCTTCTCCTTAAACAGCAGC 59.871 52.381 0.00 0.00 0.00 5.25
1596 2861 1.734465 CCGCTTCTCCTTAAACAGCAG 59.266 52.381 0.00 0.00 0.00 4.24
1600 2865 1.002773 GTCCCCGCTTCTCCTTAAACA 59.997 52.381 0.00 0.00 0.00 2.83
1615 2880 4.618920 AAGAACATATATCCGTGTCCCC 57.381 45.455 0.00 0.00 0.00 4.81
1627 2892 5.105957 TGTGCCGTGCAATAAAAGAACATAT 60.106 36.000 0.00 0.00 41.47 1.78
1628 2893 4.216472 TGTGCCGTGCAATAAAAGAACATA 59.784 37.500 0.00 0.00 41.47 2.29
1631 2896 3.006659 TGTGCCGTGCAATAAAAGAAC 57.993 42.857 0.00 0.00 41.47 3.01
1632 2897 3.932545 ATGTGCCGTGCAATAAAAGAA 57.067 38.095 0.00 0.00 41.47 2.52
1634 2899 3.836949 AGAATGTGCCGTGCAATAAAAG 58.163 40.909 0.00 0.00 41.47 2.27
1641 2908 2.232696 TCTAACTAGAATGTGCCGTGCA 59.767 45.455 0.00 0.00 35.60 4.57
1661 2928 3.244181 ACTTTGTGCATGTTCCCCAATTC 60.244 43.478 0.00 0.00 0.00 2.17
1675 2942 2.802247 GCAGGGAAATTTCACTTTGTGC 59.198 45.455 20.48 17.01 39.37 4.57
1677 2944 6.458210 CATTAGCAGGGAAATTTCACTTTGT 58.542 36.000 20.48 10.21 39.37 2.83
1678 2945 5.870978 CCATTAGCAGGGAAATTTCACTTTG 59.129 40.000 20.48 12.29 39.37 2.77
1679 2946 5.779771 TCCATTAGCAGGGAAATTTCACTTT 59.220 36.000 20.48 13.74 39.37 2.66
1680 2947 5.332743 TCCATTAGCAGGGAAATTTCACTT 58.667 37.500 20.48 9.90 39.37 3.16
1681 2948 4.934356 TCCATTAGCAGGGAAATTTCACT 58.066 39.130 17.45 17.45 42.94 3.41
1682 2949 5.859205 ATCCATTAGCAGGGAAATTTCAC 57.141 39.130 19.49 16.37 36.62 3.18
1683 2950 8.551682 AAATATCCATTAGCAGGGAAATTTCA 57.448 30.769 19.49 0.00 36.62 2.69
1684 2951 9.836864 AAAAATATCCATTAGCAGGGAAATTTC 57.163 29.630 9.83 9.83 36.62 2.17
1685 2952 9.617523 CAAAAATATCCATTAGCAGGGAAATTT 57.382 29.630 0.00 0.00 36.62 1.82
1686 2953 8.771286 ACAAAAATATCCATTAGCAGGGAAATT 58.229 29.630 0.00 0.00 36.62 1.82
1687 2954 8.322905 ACAAAAATATCCATTAGCAGGGAAAT 57.677 30.769 0.00 0.00 36.62 2.17
1688 2955 7.732222 ACAAAAATATCCATTAGCAGGGAAA 57.268 32.000 0.00 0.00 36.62 3.13
1689 2956 7.732222 AACAAAAATATCCATTAGCAGGGAA 57.268 32.000 0.00 0.00 36.62 3.97
1690 2957 7.732222 AAACAAAAATATCCATTAGCAGGGA 57.268 32.000 0.00 0.00 37.64 4.20
1755 3023 4.630894 TGCAGGACAGTAACAAAAAGTG 57.369 40.909 0.00 0.00 0.00 3.16
1800 3086 7.394641 ACCTGATCAGATACGATAGCTTTGATA 59.605 37.037 24.62 0.00 42.67 2.15
1802 3088 5.536538 ACCTGATCAGATACGATAGCTTTGA 59.463 40.000 24.62 0.00 42.67 2.69
1813 3099 4.709397 CCCTATCTGGACCTGATCAGATAC 59.291 50.000 24.62 8.66 45.61 2.24
1973 3262 9.750125 GAGAAGAAAATACCACACATTCTTTTT 57.250 29.630 0.00 0.00 39.66 1.94
1974 3263 8.912988 TGAGAAGAAAATACCACACATTCTTTT 58.087 29.630 0.00 0.00 39.66 2.27
1975 3264 8.463930 TGAGAAGAAAATACCACACATTCTTT 57.536 30.769 0.00 0.00 39.66 2.52
1976 3265 7.721399 ACTGAGAAGAAAATACCACACATTCTT 59.279 33.333 0.00 0.00 41.60 2.52
1979 3268 6.772716 ACACTGAGAAGAAAATACCACACATT 59.227 34.615 0.00 0.00 0.00 2.71
1980 3269 6.299141 ACACTGAGAAGAAAATACCACACAT 58.701 36.000 0.00 0.00 0.00 3.21
1982 3271 7.907214 ATACACTGAGAAGAAAATACCACAC 57.093 36.000 0.00 0.00 0.00 3.82
1985 3274 7.037586 AGGGAATACACTGAGAAGAAAATACCA 60.038 37.037 0.00 0.00 0.00 3.25
1986 3275 7.339482 AGGGAATACACTGAGAAGAAAATACC 58.661 38.462 0.00 0.00 0.00 2.73
1987 3276 8.261522 AGAGGGAATACACTGAGAAGAAAATAC 58.738 37.037 0.00 0.00 0.00 1.89
1988 3277 8.380742 AGAGGGAATACACTGAGAAGAAAATA 57.619 34.615 0.00 0.00 0.00 1.40
1989 3278 7.264294 AGAGGGAATACACTGAGAAGAAAAT 57.736 36.000 0.00 0.00 0.00 1.82
1990 3279 6.688073 AGAGGGAATACACTGAGAAGAAAA 57.312 37.500 0.00 0.00 0.00 2.29
1991 3280 6.688073 AAGAGGGAATACACTGAGAAGAAA 57.312 37.500 0.00 0.00 0.00 2.52
1992 3281 7.979786 ATAAGAGGGAATACACTGAGAAGAA 57.020 36.000 0.00 0.00 0.00 2.52
1993 3282 7.979786 AATAAGAGGGAATACACTGAGAAGA 57.020 36.000 0.00 0.00 0.00 2.87
2002 3291 9.627123 CCACAAGAAATAATAAGAGGGAATACA 57.373 33.333 0.00 0.00 0.00 2.29
2003 3292 8.568794 GCCACAAGAAATAATAAGAGGGAATAC 58.431 37.037 0.00 0.00 0.00 1.89
2004 3293 8.278639 TGCCACAAGAAATAATAAGAGGGAATA 58.721 33.333 0.00 0.00 0.00 1.75
2005 3294 7.125391 TGCCACAAGAAATAATAAGAGGGAAT 58.875 34.615 0.00 0.00 0.00 3.01
2006 3295 6.489603 TGCCACAAGAAATAATAAGAGGGAA 58.510 36.000 0.00 0.00 0.00 3.97
2007 3296 6.073447 TGCCACAAGAAATAATAAGAGGGA 57.927 37.500 0.00 0.00 0.00 4.20
2052 3341 3.229293 TCATGTTGCTTTTCCATGACCA 58.771 40.909 0.00 0.00 39.87 4.02
2094 3385 8.764524 AGTTGATTCTGTGTAGTTTCATAGAC 57.235 34.615 0.00 0.00 35.82 2.59
2126 3417 3.157881 TCTAAGGCTGCTAGCGTCATAT 58.842 45.455 10.77 0.00 43.62 1.78
2127 3418 2.583143 TCTAAGGCTGCTAGCGTCATA 58.417 47.619 10.77 3.37 43.62 2.15
2128 3419 1.403814 TCTAAGGCTGCTAGCGTCAT 58.596 50.000 10.77 2.28 43.62 3.06
2129 3420 1.403814 ATCTAAGGCTGCTAGCGTCA 58.596 50.000 10.77 0.00 43.62 4.35
2130 3421 2.293677 TGTATCTAAGGCTGCTAGCGTC 59.706 50.000 10.77 6.65 43.62 5.19
2131 3422 2.034812 GTGTATCTAAGGCTGCTAGCGT 59.965 50.000 10.77 0.71 43.62 5.07
2132 3423 2.034685 TGTGTATCTAAGGCTGCTAGCG 59.965 50.000 10.77 6.22 43.62 4.26
2482 3774 5.689383 ACACCATCACAACATTCAGTAAC 57.311 39.130 0.00 0.00 0.00 2.50
2511 3803 7.202526 TCAACATCAAACTTTCTTGCCTTTAG 58.797 34.615 0.00 0.00 0.00 1.85
3090 4383 2.361757 CTGAAGCTGACCGATGAGATCT 59.638 50.000 0.00 0.00 0.00 2.75
3287 4580 1.328279 TTGTGCTCCAGAGAAGTCGA 58.672 50.000 0.00 0.00 0.00 4.20
3356 4649 8.507249 GCTACAGAACAAAATTAACAGAGACAT 58.493 33.333 0.00 0.00 0.00 3.06
3429 4723 5.777732 ACCCAATACCTAAAGAAATGCACAA 59.222 36.000 0.00 0.00 0.00 3.33
3754 5048 3.988517 CACGAAGTTAGTTCCTTGTCCTC 59.011 47.826 0.00 0.00 41.61 3.71
3926 5220 9.283768 CAAATATGTTAATGTGCCTATGTCCTA 57.716 33.333 0.00 0.00 0.00 2.94
3928 5222 7.940850 ACAAATATGTTAATGTGCCTATGTCC 58.059 34.615 0.00 0.00 35.91 4.02
4161 5455 5.080068 GCACGCTTTGACACTAACTAAATC 58.920 41.667 0.00 0.00 0.00 2.17
4179 5473 0.645868 GAGACGAGGTATTTGCACGC 59.354 55.000 0.00 0.00 0.00 5.34
4181 5475 0.645868 GCGAGACGAGGTATTTGCAC 59.354 55.000 0.00 0.00 0.00 4.57
4199 5501 6.462073 TTGTACTTCTAGTTTCATTCACGC 57.538 37.500 0.00 0.00 0.00 5.34
4207 5509 9.438228 AGCCTAAAAGATTGTACTTCTAGTTTC 57.562 33.333 0.00 0.00 0.00 2.78
4220 5522 9.118300 AGTTCAGATATTGAGCCTAAAAGATTG 57.882 33.333 0.00 0.00 37.72 2.67
4224 5526 9.050601 CCTAAGTTCAGATATTGAGCCTAAAAG 57.949 37.037 0.00 0.00 37.72 2.27
4225 5527 8.548877 ACCTAAGTTCAGATATTGAGCCTAAAA 58.451 33.333 0.00 0.00 37.72 1.52
4227 5529 7.419057 CCACCTAAGTTCAGATATTGAGCCTAA 60.419 40.741 0.00 0.00 37.72 2.69
4240 5542 3.971245 AGAGAAGCCACCTAAGTTCAG 57.029 47.619 0.00 0.00 0.00 3.02
4241 5543 4.417437 ACTAGAGAAGCCACCTAAGTTCA 58.583 43.478 0.00 0.00 0.00 3.18
4242 5544 5.408880 AACTAGAGAAGCCACCTAAGTTC 57.591 43.478 0.00 0.00 0.00 3.01
4256 5558 3.715638 TCTGGGAGACGAAACTAGAGA 57.284 47.619 0.00 0.00 0.00 3.10
4265 5567 1.480954 GTGCCTTAATCTGGGAGACGA 59.519 52.381 0.00 0.00 0.00 4.20
4267 5569 3.350219 TTGTGCCTTAATCTGGGAGAC 57.650 47.619 0.00 0.00 0.00 3.36
4272 5574 3.157087 ACCAGTTTGTGCCTTAATCTGG 58.843 45.455 15.00 15.00 44.72 3.86
4298 5772 9.884465 GCGATAAATTTATCTGAGCATTAAGTT 57.116 29.630 27.45 0.00 37.88 2.66
4306 5780 7.834068 TCATAGGCGATAAATTTATCTGAGC 57.166 36.000 27.45 23.48 37.88 4.26
4562 6036 2.753029 ACAGCTGGTGAAGAGGGC 59.247 61.111 19.93 0.00 0.00 5.19
4755 6229 1.204941 GACTGTGTATTCAGCCTCCGT 59.795 52.381 0.00 0.00 38.84 4.69
4757 6231 2.763448 AGAGACTGTGTATTCAGCCTCC 59.237 50.000 6.44 0.00 42.90 4.30
4763 6237 3.748048 GCTTTGCAGAGACTGTGTATTCA 59.252 43.478 8.73 0.00 33.43 2.57
5156 6630 1.135083 ACTACGGTGAAGAAGGATGCG 60.135 52.381 0.00 0.00 0.00 4.73
5322 6807 1.731709 CACATCGCATTCCGTTCTTCA 59.268 47.619 0.00 0.00 38.35 3.02
5437 6922 5.360714 ACCAATGAATTATAGCAACACAGGG 59.639 40.000 0.00 0.00 0.00 4.45
5470 6955 6.128486 AGGCATAATGTATGTCATGGTTGAA 58.872 36.000 2.95 0.00 43.07 2.69
5497 6982 3.619419 TCCACATGGTCACAATGTATGG 58.381 45.455 0.00 0.00 36.34 2.74
5545 7030 7.722949 AATGTATTTCCATCCACAATTGACT 57.277 32.000 13.59 0.00 0.00 3.41
5728 7213 5.316167 TGCTGTGAAAGATGAAGGTAACAT 58.684 37.500 0.00 0.00 41.41 2.71
5809 7294 2.632377 CACTATTGGCATCAAGTCCGT 58.368 47.619 0.00 0.00 36.19 4.69
5941 7432 2.560981 TCCGCAGATCAACTACTGTTCA 59.439 45.455 0.00 0.00 36.62 3.18
5947 7438 3.232213 TGTCTTCCGCAGATCAACTAC 57.768 47.619 0.00 0.00 32.60 2.73
5958 7449 2.421424 AGCTGATGATTTTGTCTTCCGC 59.579 45.455 0.00 0.00 39.75 5.54
5959 7450 5.998454 ATAGCTGATGATTTTGTCTTCCG 57.002 39.130 0.00 0.00 31.69 4.30
6061 7565 0.733150 GATACAGAAAACAGCGGGCC 59.267 55.000 0.00 0.00 0.00 5.80
6063 7567 3.334691 TCAAGATACAGAAAACAGCGGG 58.665 45.455 0.00 0.00 0.00 6.13
6089 7593 2.030540 TCGGGTATGCTTATGCTACGTC 60.031 50.000 0.00 0.00 40.48 4.34
6141 7645 2.544267 ACAAGACTACAAGCGTTGCTTC 59.456 45.455 0.16 0.00 46.77 3.86
6173 7677 3.181491 TGGACTTTGGACTTTTCGCAAAG 60.181 43.478 5.98 5.98 44.57 2.77
6192 7696 8.792830 AGGGTTTGTACTACTTGATATATGGA 57.207 34.615 0.00 0.00 0.00 3.41
6261 9350 0.689623 AGAAGACTCCAGCACCCAAG 59.310 55.000 0.00 0.00 0.00 3.61
6263 9352 1.140312 AAAGAAGACTCCAGCACCCA 58.860 50.000 0.00 0.00 0.00 4.51
6269 9358 4.478206 TGCAGGATAAAGAAGACTCCAG 57.522 45.455 0.00 0.00 0.00 3.86
6302 9391 1.321474 ACGACTTTGTCCACTACGGA 58.679 50.000 0.00 0.00 43.61 4.69
6305 9394 1.529865 GGCAACGACTTTGTCCACTAC 59.470 52.381 0.00 0.00 37.54 2.73
6332 9422 1.470112 GCTCTACTGAGACGAAAGCCC 60.470 57.143 0.00 0.00 42.73 5.19
6336 9426 4.585955 AGTTTGCTCTACTGAGACGAAA 57.414 40.909 0.00 0.00 42.73 3.46
6338 9428 5.899120 ATAAGTTTGCTCTACTGAGACGA 57.101 39.130 0.00 0.00 42.73 4.20
6348 9438 6.303839 TCTTGGGTGTAAATAAGTTTGCTCT 58.696 36.000 0.00 0.00 32.02 4.09
6349 9439 6.569179 TCTTGGGTGTAAATAAGTTTGCTC 57.431 37.500 0.00 0.00 32.02 4.26
6357 9447 7.490657 TCTAGAAGCTCTTGGGTGTAAATAA 57.509 36.000 0.00 0.00 0.00 1.40
6359 9449 6.374417 TTCTAGAAGCTCTTGGGTGTAAAT 57.626 37.500 0.00 0.00 0.00 1.40
6390 9480 3.013921 GTTTACATCGATGGCTTCCCAA 58.986 45.455 28.09 7.93 46.14 4.12
6394 9484 3.531538 TCTGGTTTACATCGATGGCTTC 58.468 45.455 28.09 15.29 0.00 3.86
6398 9488 5.390613 GTGTTTTCTGGTTTACATCGATGG 58.609 41.667 28.09 11.30 0.00 3.51
6400 9490 4.153475 CGGTGTTTTCTGGTTTACATCGAT 59.847 41.667 0.00 0.00 45.28 3.59
6406 9496 4.084171 GCTAGTCGGTGTTTTCTGGTTTAC 60.084 45.833 0.00 0.00 0.00 2.01
6409 9499 2.490991 GCTAGTCGGTGTTTTCTGGTT 58.509 47.619 0.00 0.00 0.00 3.67
6417 9507 0.246635 AGATTGCGCTAGTCGGTGTT 59.753 50.000 9.73 0.00 38.94 3.32
6419 9509 2.054363 CATAGATTGCGCTAGTCGGTG 58.946 52.381 9.73 5.00 38.94 4.94
6422 9512 4.406001 TCTACATAGATTGCGCTAGTCG 57.594 45.455 9.73 2.71 42.12 4.18
6423 9513 7.464830 TTTTTCTACATAGATTGCGCTAGTC 57.535 36.000 9.73 3.89 31.40 2.59
6426 9516 7.132213 GCAATTTTTCTACATAGATTGCGCTA 58.868 34.615 9.73 0.00 35.91 4.26
6427 9517 5.973565 GCAATTTTTCTACATAGATTGCGCT 59.026 36.000 9.73 0.00 35.91 5.92
6437 9527 2.166254 CAGGGCGGCAATTTTTCTACAT 59.834 45.455 12.47 0.00 0.00 2.29
6438 9528 1.543802 CAGGGCGGCAATTTTTCTACA 59.456 47.619 12.47 0.00 0.00 2.74
6439 9529 1.816224 TCAGGGCGGCAATTTTTCTAC 59.184 47.619 12.47 0.00 0.00 2.59
6443 9533 1.818674 CTACTCAGGGCGGCAATTTTT 59.181 47.619 12.47 0.00 0.00 1.94
6449 9539 0.321298 GTTTTCTACTCAGGGCGGCA 60.321 55.000 12.47 0.00 0.00 5.69
6451 9541 2.093447 AGATGTTTTCTACTCAGGGCGG 60.093 50.000 0.00 0.00 30.96 6.13
6452 9542 2.932614 CAGATGTTTTCTACTCAGGGCG 59.067 50.000 0.00 0.00 31.77 6.13
6463 9554 3.594603 TCGGTCCTCTCAGATGTTTTC 57.405 47.619 0.00 0.00 0.00 2.29
6469 9560 1.286553 AGGAGTTCGGTCCTCTCAGAT 59.713 52.381 7.53 0.00 44.25 2.90
6502 9595 1.355043 AGTAGTCTTCCCCGACTCTGT 59.645 52.381 0.00 0.00 42.92 3.41
6504 9597 1.917568 AGAGTAGTCTTCCCCGACTCT 59.082 52.381 0.00 0.00 42.92 3.24
6505 9598 2.291365 GAGAGTAGTCTTCCCCGACTC 58.709 57.143 0.56 0.00 42.92 3.36
6509 9602 1.473278 GTGTGAGAGTAGTCTTCCCCG 59.527 57.143 0.56 0.00 30.97 5.73
6516 9609 0.452585 GGGAGCGTGTGAGAGTAGTC 59.547 60.000 0.00 0.00 0.00 2.59
6524 9617 0.817634 CTTTGTTGGGGAGCGTGTGA 60.818 55.000 0.00 0.00 0.00 3.58
6535 9628 1.368579 CCAGCCTTGGCTTTGTTGG 59.631 57.895 11.99 6.94 37.73 3.77
6552 9645 1.595382 CGATCGATGGAGGTTGGCC 60.595 63.158 10.26 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.