Multiple sequence alignment - TraesCS2D01G335400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G335400 chr2D 100.000 5070 0 0 1 5070 428663849 428658780 0.000000e+00 9363.0
1 TraesCS2D01G335400 chr2D 91.020 245 9 8 1270 1510 428662280 428662045 8.190000e-83 318.0
2 TraesCS2D01G335400 chr2D 91.020 245 9 8 1570 1805 428662580 428662340 8.190000e-83 318.0
3 TraesCS2D01G335400 chr2D 94.828 58 2 1 129 185 629605559 629605502 6.990000e-14 89.8
4 TraesCS2D01G335400 chr2D 89.706 68 3 1 1162 1229 326216551 326216614 3.250000e-12 84.2
5 TraesCS2D01G335400 chr2B 93.694 3441 156 29 1588 4976 505802909 505799478 0.000000e+00 5096.0
6 TraesCS2D01G335400 chr2B 89.722 360 15 6 414 757 505805532 505805179 1.680000e-119 440.0
7 TraesCS2D01G335400 chr2B 89.068 311 31 2 843 1150 505803268 505802958 2.860000e-102 383.0
8 TraesCS2D01G335400 chr2B 92.149 242 11 7 1275 1510 505802927 505802688 8.130000e-88 335.0
9 TraesCS2D01G335400 chr2B 97.872 47 1 0 5024 5070 505799483 505799437 1.170000e-11 82.4
10 TraesCS2D01G335400 chr2B 89.394 66 3 1 1163 1228 189410355 189410294 4.210000e-11 80.5
11 TraesCS2D01G335400 chr2B 95.455 44 2 0 1163 1206 725575649 725575692 2.530000e-08 71.3
12 TraesCS2D01G335400 chr2A 94.139 1945 74 8 1226 3154 559081850 559083770 0.000000e+00 2924.0
13 TraesCS2D01G335400 chr2A 93.016 1031 53 14 4033 5058 559085244 559086260 0.000000e+00 1487.0
14 TraesCS2D01G335400 chr2A 97.062 885 17 4 3155 4037 559083802 559084679 0.000000e+00 1482.0
15 TraesCS2D01G335400 chr2A 92.358 759 35 9 414 1150 559081088 559081845 0.000000e+00 1059.0
16 TraesCS2D01G335400 chr2A 92.339 248 9 6 1267 1510 559082168 559082409 1.350000e-90 344.0
17 TraesCS2D01G335400 chr2A 84.766 256 11 10 1563 1811 559081887 559082121 1.100000e-56 231.0
18 TraesCS2D01G335400 chr7B 92.754 69 1 1 1163 1231 53250638 53250574 4.180000e-16 97.1
19 TraesCS2D01G335400 chr7B 91.935 62 1 2 129 186 388175840 388175901 3.250000e-12 84.2
20 TraesCS2D01G335400 chr7B 92.500 40 1 2 1146 1185 411053169 411053132 7.090000e-04 56.5
21 TraesCS2D01G335400 chr7B 97.059 34 0 1 1153 1185 695761150 695761183 7.090000e-04 56.5
22 TraesCS2D01G335400 chr1D 95.000 60 2 1 127 185 50062626 50062567 5.400000e-15 93.5
23 TraesCS2D01G335400 chr1D 91.429 70 1 3 1163 1231 107175582 107175517 1.940000e-14 91.6
24 TraesCS2D01G335400 chr1B 93.651 63 2 1 124 184 306705615 306705553 5.400000e-15 93.5
25 TraesCS2D01G335400 chr5D 89.189 74 4 3 112 184 549645427 549645497 6.990000e-14 89.8
26 TraesCS2D01G335400 chr7D 93.333 60 1 3 129 185 101475459 101475400 9.040000e-13 86.1
27 TraesCS2D01G335400 chr4A 91.803 61 3 2 126 186 134538282 134538340 3.250000e-12 84.2
28 TraesCS2D01G335400 chrUn 90.476 63 4 2 127 187 92778947 92778885 1.170000e-11 82.4
29 TraesCS2D01G335400 chr1A 89.706 68 1 4 1163 1229 109577206 109577144 1.170000e-11 82.4
30 TraesCS2D01G335400 chr6B 89.231 65 5 2 126 190 12003727 12003665 4.210000e-11 80.5
31 TraesCS2D01G335400 chr5B 92.000 50 0 1 1184 1233 317294280 317294235 3.280000e-07 67.6
32 TraesCS2D01G335400 chr3A 92.000 50 0 1 1179 1228 32446188 32446143 3.280000e-07 67.6
33 TraesCS2D01G335400 chr4B 90.000 50 1 1 1184 1233 404569912 404569957 1.520000e-05 62.1
34 TraesCS2D01G335400 chr4D 100.000 30 0 0 1156 1185 359681473 359681502 7.090000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G335400 chr2D 428658780 428663849 5069 True 3333.00 9363 94.013333 1 5070 3 chr2D.!!$R2 5069
1 TraesCS2D01G335400 chr2B 505799437 505805532 6095 True 1267.28 5096 92.501000 414 5070 5 chr2B.!!$R2 4656
2 TraesCS2D01G335400 chr2A 559081088 559086260 5172 False 1254.50 2924 92.280000 414 5058 6 chr2A.!!$F1 4644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.033306 GTTAGGAGGTCGAGAGGGGT 60.033 60.0 0.00 0.0 0.00 4.95 F
275 276 0.035820 TTCGGTCGAGGAAATTGGGG 60.036 55.0 0.00 0.0 0.00 4.96 F
305 306 0.038709 GCGCGAGATAGAAGGAGCAT 60.039 55.0 12.10 0.0 0.00 3.79 F
1177 3062 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.0 0.00 0.0 0.00 4.37 F
1178 3063 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.0 0.00 0.0 0.00 4.00 F
2298 4211 0.106217 AGTTCCCCTGGTGGTTGTTG 60.106 55.0 0.00 0.0 0.00 3.33 F
2317 4230 1.155042 GTCTGTTTGCAGGAGCTCAG 58.845 55.0 17.19 8.6 42.78 3.35 F
2399 4312 1.692411 GGTTCCCTCACAAAGCTTGT 58.308 50.0 0.00 0.0 46.75 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1216 3101 0.033011 AGCACATCTACTCCCTCCGT 60.033 55.000 0.0 0.0 0.00 4.69 R
1217 3102 0.387202 CAGCACATCTACTCCCTCCG 59.613 60.000 0.0 0.0 0.00 4.63 R
2183 4096 0.530744 GACCACATCGCTACACTCCA 59.469 55.000 0.0 0.0 0.00 3.86 R
2798 4711 1.865788 ATGATGCACCAACACCACGC 61.866 55.000 0.0 0.0 0.00 5.34 R
2802 4715 2.756760 AGATGAATGATGCACCAACACC 59.243 45.455 0.0 0.0 0.00 4.16 R
3777 5730 1.149101 ATCATCCCATACCACCCCAC 58.851 55.000 0.0 0.0 0.00 4.61 R
3928 5881 1.186200 CATCACCTTCCTCCAGACGA 58.814 55.000 0.0 0.0 0.00 4.20 R
4362 6886 1.419012 CCTGAGGAATAGCAGATGCCA 59.581 52.381 0.0 0.0 43.38 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.322906 TGCCTACTGTAAATCACAATATATGC 57.677 34.615 0.00 0.00 36.48 3.14
27 28 8.156820 TGCCTACTGTAAATCACAATATATGCT 58.843 33.333 0.00 0.00 36.48 3.79
28 29 8.660373 GCCTACTGTAAATCACAATATATGCTC 58.340 37.037 0.00 0.00 36.48 4.26
29 30 9.710900 CCTACTGTAAATCACAATATATGCTCA 57.289 33.333 0.00 0.00 36.48 4.26
31 32 8.962884 ACTGTAAATCACAATATATGCTCACA 57.037 30.769 0.00 0.00 36.48 3.58
32 33 9.565090 ACTGTAAATCACAATATATGCTCACAT 57.435 29.630 0.00 0.00 36.48 3.21
51 52 9.173939 GCTCACATTTTAATGACTATACATTGC 57.826 33.333 9.32 0.00 40.15 3.56
86 87 7.847166 AAAAACGTGAAATATTCGAAAGGTC 57.153 32.000 0.00 0.00 0.00 3.85
87 88 6.548441 AAACGTGAAATATTCGAAAGGTCA 57.452 33.333 0.00 0.89 0.00 4.02
88 89 6.737254 AACGTGAAATATTCGAAAGGTCAT 57.263 33.333 0.00 0.00 0.00 3.06
89 90 6.737254 ACGTGAAATATTCGAAAGGTCATT 57.263 33.333 0.00 0.00 0.00 2.57
90 91 6.772078 ACGTGAAATATTCGAAAGGTCATTC 58.228 36.000 0.00 2.60 0.00 2.67
91 92 6.370442 ACGTGAAATATTCGAAAGGTCATTCA 59.630 34.615 0.00 5.16 0.00 2.57
92 93 7.065803 ACGTGAAATATTCGAAAGGTCATTCAT 59.934 33.333 0.00 0.00 0.00 2.57
93 94 8.547894 CGTGAAATATTCGAAAGGTCATTCATA 58.452 33.333 0.00 0.00 0.00 2.15
102 103 9.830975 TTCGAAAGGTCATTCATAATATTCTGA 57.169 29.630 0.00 0.00 0.00 3.27
103 104 9.830975 TCGAAAGGTCATTCATAATATTCTGAA 57.169 29.630 16.03 16.03 35.95 3.02
123 124 8.740123 TCTGAAAAATGTAGAAAACAGGTACA 57.260 30.769 0.00 0.00 42.70 2.90
124 125 8.836413 TCTGAAAAATGTAGAAAACAGGTACAG 58.164 33.333 0.00 0.00 42.70 2.74
125 126 8.514330 TGAAAAATGTAGAAAACAGGTACAGT 57.486 30.769 0.00 0.00 42.70 3.55
126 127 9.616156 TGAAAAATGTAGAAAACAGGTACAGTA 57.384 29.630 0.00 0.00 42.70 2.74
127 128 9.874215 GAAAAATGTAGAAAACAGGTACAGTAC 57.126 33.333 1.59 1.59 42.70 2.73
128 129 9.623000 AAAAATGTAGAAAACAGGTACAGTACT 57.377 29.630 10.62 0.00 42.70 2.73
130 131 9.702494 AAATGTAGAAAACAGGTACAGTACTAC 57.298 33.333 10.62 8.35 42.70 2.73
131 132 8.647256 ATGTAGAAAACAGGTACAGTACTACT 57.353 34.615 10.62 0.00 42.70 2.57
132 133 8.103948 TGTAGAAAACAGGTACAGTACTACTC 57.896 38.462 10.62 0.00 33.89 2.59
133 134 6.587206 AGAAAACAGGTACAGTACTACTCC 57.413 41.667 10.62 0.00 0.00 3.85
134 135 5.479724 AGAAAACAGGTACAGTACTACTCCC 59.520 44.000 10.62 0.00 0.00 4.30
135 136 4.671596 AACAGGTACAGTACTACTCCCT 57.328 45.455 10.62 0.00 0.00 4.20
136 137 4.233632 ACAGGTACAGTACTACTCCCTC 57.766 50.000 10.62 0.00 0.00 4.30
137 138 3.053768 ACAGGTACAGTACTACTCCCTCC 60.054 52.174 10.62 0.00 0.00 4.30
138 139 2.172293 AGGTACAGTACTACTCCCTCCG 59.828 54.545 10.62 0.00 0.00 4.63
139 140 2.092699 GGTACAGTACTACTCCCTCCGT 60.093 54.545 10.62 0.00 0.00 4.69
140 141 2.416680 ACAGTACTACTCCCTCCGTC 57.583 55.000 0.00 0.00 0.00 4.79
141 142 1.064832 ACAGTACTACTCCCTCCGTCC 60.065 57.143 0.00 0.00 0.00 4.79
142 143 0.550432 AGTACTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
143 144 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
144 145 1.133544 GTACTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
145 146 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
146 147 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
147 148 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
148 149 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
149 150 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
150 151 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
151 152 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
152 153 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
153 154 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
154 155 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
155 156 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
156 157 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
157 158 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
158 159 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
159 160 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
160 161 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
161 162 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
162 163 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
163 164 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
164 165 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
165 166 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
166 167 8.567948 CCCATAATATAAGAGCGTTTTTGACAT 58.432 33.333 0.00 0.00 0.00 3.06
171 172 4.701956 AAGAGCGTTTTTGACATATGGG 57.298 40.909 7.80 0.00 0.00 4.00
172 173 3.016736 AGAGCGTTTTTGACATATGGGG 58.983 45.455 7.80 0.00 0.00 4.96
173 174 1.476488 AGCGTTTTTGACATATGGGGC 59.524 47.619 7.80 0.00 0.00 5.80
174 175 1.797348 GCGTTTTTGACATATGGGGCG 60.797 52.381 7.80 3.19 0.00 6.13
175 176 1.202245 CGTTTTTGACATATGGGGCGG 60.202 52.381 7.80 0.00 0.00 6.13
176 177 2.096248 GTTTTTGACATATGGGGCGGA 58.904 47.619 7.80 0.00 0.00 5.54
177 178 2.051334 TTTTGACATATGGGGCGGAG 57.949 50.000 7.80 0.00 0.00 4.63
178 179 0.182537 TTTGACATATGGGGCGGAGG 59.817 55.000 7.80 0.00 0.00 4.30
179 180 1.705002 TTGACATATGGGGCGGAGGG 61.705 60.000 7.80 0.00 0.00 4.30
180 181 1.841556 GACATATGGGGCGGAGGGA 60.842 63.158 7.80 0.00 0.00 4.20
181 182 1.831652 GACATATGGGGCGGAGGGAG 61.832 65.000 7.80 0.00 0.00 4.30
182 183 1.843376 CATATGGGGCGGAGGGAGT 60.843 63.158 0.00 0.00 0.00 3.85
183 184 0.544357 CATATGGGGCGGAGGGAGTA 60.544 60.000 0.00 0.00 0.00 2.59
184 185 0.252284 ATATGGGGCGGAGGGAGTAG 60.252 60.000 0.00 0.00 0.00 2.57
185 186 1.661990 TATGGGGCGGAGGGAGTAGT 61.662 60.000 0.00 0.00 0.00 2.73
186 187 2.365237 GGGGCGGAGGGAGTAGTT 60.365 66.667 0.00 0.00 0.00 2.24
187 188 2.732619 GGGGCGGAGGGAGTAGTTG 61.733 68.421 0.00 0.00 0.00 3.16
188 189 1.988406 GGGCGGAGGGAGTAGTTGT 60.988 63.158 0.00 0.00 0.00 3.32
189 190 1.551019 GGGCGGAGGGAGTAGTTGTT 61.551 60.000 0.00 0.00 0.00 2.83
190 191 1.188863 GGCGGAGGGAGTAGTTGTTA 58.811 55.000 0.00 0.00 0.00 2.41
191 192 1.136500 GGCGGAGGGAGTAGTTGTTAG 59.864 57.143 0.00 0.00 0.00 2.34
192 193 1.136500 GCGGAGGGAGTAGTTGTTAGG 59.864 57.143 0.00 0.00 0.00 2.69
193 194 2.731572 CGGAGGGAGTAGTTGTTAGGA 58.268 52.381 0.00 0.00 0.00 2.94
194 195 2.688958 CGGAGGGAGTAGTTGTTAGGAG 59.311 54.545 0.00 0.00 0.00 3.69
195 196 3.032459 GGAGGGAGTAGTTGTTAGGAGG 58.968 54.545 0.00 0.00 0.00 4.30
196 197 3.566111 GGAGGGAGTAGTTGTTAGGAGGT 60.566 52.174 0.00 0.00 0.00 3.85
197 198 3.700539 GAGGGAGTAGTTGTTAGGAGGTC 59.299 52.174 0.00 0.00 0.00 3.85
198 199 2.426381 GGGAGTAGTTGTTAGGAGGTCG 59.574 54.545 0.00 0.00 0.00 4.79
199 200 3.350833 GGAGTAGTTGTTAGGAGGTCGA 58.649 50.000 0.00 0.00 0.00 4.20
200 201 3.377798 GGAGTAGTTGTTAGGAGGTCGAG 59.622 52.174 0.00 0.00 0.00 4.04
201 202 4.260170 GAGTAGTTGTTAGGAGGTCGAGA 58.740 47.826 0.00 0.00 0.00 4.04
202 203 4.263435 AGTAGTTGTTAGGAGGTCGAGAG 58.737 47.826 0.00 0.00 0.00 3.20
203 204 2.448453 AGTTGTTAGGAGGTCGAGAGG 58.552 52.381 0.00 0.00 0.00 3.69
204 205 1.477295 GTTGTTAGGAGGTCGAGAGGG 59.523 57.143 0.00 0.00 0.00 4.30
205 206 0.033405 TGTTAGGAGGTCGAGAGGGG 60.033 60.000 0.00 0.00 0.00 4.79
206 207 0.033306 GTTAGGAGGTCGAGAGGGGT 60.033 60.000 0.00 0.00 0.00 4.95
207 208 0.708802 TTAGGAGGTCGAGAGGGGTT 59.291 55.000 0.00 0.00 0.00 4.11
208 209 1.600058 TAGGAGGTCGAGAGGGGTTA 58.400 55.000 0.00 0.00 0.00 2.85
209 210 0.259356 AGGAGGTCGAGAGGGGTTAG 59.741 60.000 0.00 0.00 0.00 2.34
210 211 0.756070 GGAGGTCGAGAGGGGTTAGG 60.756 65.000 0.00 0.00 0.00 2.69
211 212 0.756070 GAGGTCGAGAGGGGTTAGGG 60.756 65.000 0.00 0.00 0.00 3.53
212 213 1.001376 GGTCGAGAGGGGTTAGGGT 59.999 63.158 0.00 0.00 0.00 4.34
213 214 0.616964 GGTCGAGAGGGGTTAGGGTT 60.617 60.000 0.00 0.00 0.00 4.11
214 215 1.273759 GTCGAGAGGGGTTAGGGTTT 58.726 55.000 0.00 0.00 0.00 3.27
215 216 2.460669 GTCGAGAGGGGTTAGGGTTTA 58.539 52.381 0.00 0.00 0.00 2.01
216 217 2.429971 GTCGAGAGGGGTTAGGGTTTAG 59.570 54.545 0.00 0.00 0.00 1.85
217 218 2.043526 TCGAGAGGGGTTAGGGTTTAGT 59.956 50.000 0.00 0.00 0.00 2.24
218 219 3.269381 TCGAGAGGGGTTAGGGTTTAGTA 59.731 47.826 0.00 0.00 0.00 1.82
219 220 4.026052 CGAGAGGGGTTAGGGTTTAGTAA 58.974 47.826 0.00 0.00 0.00 2.24
220 221 4.652881 CGAGAGGGGTTAGGGTTTAGTAAT 59.347 45.833 0.00 0.00 0.00 1.89
221 222 5.221402 CGAGAGGGGTTAGGGTTTAGTAATC 60.221 48.000 0.00 0.00 0.00 1.75
222 223 4.973856 AGAGGGGTTAGGGTTTAGTAATCC 59.026 45.833 1.81 1.81 34.49 3.01
223 224 4.050037 AGGGGTTAGGGTTTAGTAATCCC 58.950 47.826 18.13 18.13 46.46 3.85
224 225 3.787577 GGGGTTAGGGTTTAGTAATCCCA 59.212 47.826 24.84 12.23 45.69 4.37
225 226 4.230272 GGGGTTAGGGTTTAGTAATCCCAA 59.770 45.833 24.84 16.13 45.69 4.12
226 227 5.281663 GGGGTTAGGGTTTAGTAATCCCAAA 60.282 44.000 24.84 13.43 45.69 3.28
227 228 6.437755 GGGTTAGGGTTTAGTAATCCCAAAT 58.562 40.000 24.84 11.49 43.31 2.32
228 229 6.548622 GGGTTAGGGTTTAGTAATCCCAAATC 59.451 42.308 24.84 14.00 43.31 2.17
229 230 6.261603 GGTTAGGGTTTAGTAATCCCAAATCG 59.738 42.308 24.84 0.00 43.31 3.34
230 231 5.446260 AGGGTTTAGTAATCCCAAATCGT 57.554 39.130 24.84 6.20 43.31 3.73
231 232 6.564557 AGGGTTTAGTAATCCCAAATCGTA 57.435 37.500 24.84 0.00 43.31 3.43
232 233 6.961042 AGGGTTTAGTAATCCCAAATCGTAA 58.039 36.000 24.84 0.00 43.31 3.18
233 234 7.052248 AGGGTTTAGTAATCCCAAATCGTAAG 58.948 38.462 24.84 0.00 43.31 2.34
234 235 6.825213 GGGTTTAGTAATCCCAAATCGTAAGT 59.175 38.462 20.14 0.00 40.79 2.24
235 236 7.986889 GGGTTTAGTAATCCCAAATCGTAAGTA 59.013 37.037 20.14 0.00 40.79 2.24
236 237 9.038803 GGTTTAGTAATCCCAAATCGTAAGTAG 57.961 37.037 0.00 0.00 39.48 2.57
237 238 8.546244 GTTTAGTAATCCCAAATCGTAAGTAGC 58.454 37.037 0.00 0.00 39.48 3.58
238 239 6.229936 AGTAATCCCAAATCGTAAGTAGCA 57.770 37.500 0.00 0.00 39.48 3.49
239 240 6.646267 AGTAATCCCAAATCGTAAGTAGCAA 58.354 36.000 0.00 0.00 39.48 3.91
240 241 6.761714 AGTAATCCCAAATCGTAAGTAGCAAG 59.238 38.462 0.00 0.00 39.48 4.01
241 242 4.811969 TCCCAAATCGTAAGTAGCAAGA 57.188 40.909 0.00 0.00 39.48 3.02
242 243 5.353394 TCCCAAATCGTAAGTAGCAAGAT 57.647 39.130 0.00 0.00 39.48 2.40
243 244 5.116180 TCCCAAATCGTAAGTAGCAAGATG 58.884 41.667 0.00 0.00 39.48 2.90
244 245 4.876107 CCCAAATCGTAAGTAGCAAGATGT 59.124 41.667 0.00 0.00 39.48 3.06
245 246 6.046593 CCCAAATCGTAAGTAGCAAGATGTA 58.953 40.000 0.00 0.00 39.48 2.29
246 247 6.201044 CCCAAATCGTAAGTAGCAAGATGTAG 59.799 42.308 0.00 0.00 39.48 2.74
247 248 6.201044 CCAAATCGTAAGTAGCAAGATGTAGG 59.799 42.308 0.00 0.00 39.48 3.18
248 249 6.466885 AATCGTAAGTAGCAAGATGTAGGT 57.533 37.500 0.00 0.00 39.48 3.08
249 250 5.244785 TCGTAAGTAGCAAGATGTAGGTG 57.755 43.478 0.00 0.00 39.48 4.00
250 251 3.797256 CGTAAGTAGCAAGATGTAGGTGC 59.203 47.826 0.00 0.00 38.59 5.01
251 252 2.586258 AGTAGCAAGATGTAGGTGCG 57.414 50.000 0.00 0.00 43.16 5.34
252 253 1.825474 AGTAGCAAGATGTAGGTGCGT 59.175 47.619 0.00 0.00 43.16 5.24
253 254 2.159226 AGTAGCAAGATGTAGGTGCGTC 60.159 50.000 0.00 0.00 43.16 5.19
254 255 0.898320 AGCAAGATGTAGGTGCGTCT 59.102 50.000 0.00 0.00 43.16 4.18
255 256 1.002366 GCAAGATGTAGGTGCGTCTG 58.998 55.000 0.00 0.00 35.16 3.51
256 257 1.673033 GCAAGATGTAGGTGCGTCTGT 60.673 52.381 0.00 0.00 35.16 3.41
257 258 2.688507 CAAGATGTAGGTGCGTCTGTT 58.311 47.619 0.00 0.00 35.16 3.16
258 259 2.656560 AGATGTAGGTGCGTCTGTTC 57.343 50.000 0.00 0.00 33.82 3.18
259 260 1.135373 AGATGTAGGTGCGTCTGTTCG 60.135 52.381 0.00 0.00 33.82 3.95
260 261 0.108804 ATGTAGGTGCGTCTGTTCGG 60.109 55.000 0.00 0.00 0.00 4.30
261 262 1.288127 GTAGGTGCGTCTGTTCGGT 59.712 57.895 0.00 0.00 0.00 4.69
262 263 0.731855 GTAGGTGCGTCTGTTCGGTC 60.732 60.000 0.00 0.00 0.00 4.79
263 264 2.191354 TAGGTGCGTCTGTTCGGTCG 62.191 60.000 0.00 0.00 0.00 4.79
264 265 2.050714 GTGCGTCTGTTCGGTCGA 60.051 61.111 2.90 0.00 0.00 4.20
265 266 2.081212 GTGCGTCTGTTCGGTCGAG 61.081 63.158 2.90 0.00 0.00 4.04
266 267 2.504244 GCGTCTGTTCGGTCGAGG 60.504 66.667 2.90 0.00 0.00 4.63
267 268 2.974489 GCGTCTGTTCGGTCGAGGA 61.974 63.158 2.90 0.00 0.00 3.71
268 269 1.577922 CGTCTGTTCGGTCGAGGAA 59.422 57.895 0.00 0.00 0.00 3.36
269 270 0.039798 CGTCTGTTCGGTCGAGGAAA 60.040 55.000 0.74 0.00 0.00 3.13
270 271 1.402456 CGTCTGTTCGGTCGAGGAAAT 60.402 52.381 0.74 0.00 0.00 2.17
271 272 2.685100 GTCTGTTCGGTCGAGGAAATT 58.315 47.619 0.74 0.00 0.00 1.82
272 273 2.412089 GTCTGTTCGGTCGAGGAAATTG 59.588 50.000 0.74 0.00 0.00 2.32
273 274 1.732259 CTGTTCGGTCGAGGAAATTGG 59.268 52.381 0.74 0.00 0.00 3.16
274 275 1.084289 GTTCGGTCGAGGAAATTGGG 58.916 55.000 0.74 0.00 0.00 4.12
275 276 0.035820 TTCGGTCGAGGAAATTGGGG 60.036 55.000 0.00 0.00 0.00 4.96
276 277 1.196104 TCGGTCGAGGAAATTGGGGT 61.196 55.000 0.00 0.00 0.00 4.95
277 278 1.024579 CGGTCGAGGAAATTGGGGTG 61.025 60.000 0.00 0.00 0.00 4.61
278 279 0.679960 GGTCGAGGAAATTGGGGTGG 60.680 60.000 0.00 0.00 0.00 4.61
279 280 0.679960 GTCGAGGAAATTGGGGTGGG 60.680 60.000 0.00 0.00 0.00 4.61
280 281 2.052104 CGAGGAAATTGGGGTGGGC 61.052 63.158 0.00 0.00 0.00 5.36
281 282 2.037208 AGGAAATTGGGGTGGGCG 59.963 61.111 0.00 0.00 0.00 6.13
282 283 3.770040 GGAAATTGGGGTGGGCGC 61.770 66.667 0.00 0.00 0.00 6.53
283 284 4.128388 GAAATTGGGGTGGGCGCG 62.128 66.667 0.00 0.00 0.00 6.86
300 301 2.731348 GCCGCGCGAGATAGAAGG 60.731 66.667 34.63 12.35 0.00 3.46
301 302 3.031495 CCGCGCGAGATAGAAGGA 58.969 61.111 34.63 0.00 0.00 3.36
302 303 1.081774 CCGCGCGAGATAGAAGGAG 60.082 63.158 34.63 5.49 0.00 3.69
303 304 1.727723 CGCGCGAGATAGAAGGAGC 60.728 63.158 28.94 0.00 0.00 4.70
304 305 1.360551 GCGCGAGATAGAAGGAGCA 59.639 57.895 12.10 0.00 0.00 4.26
305 306 0.038709 GCGCGAGATAGAAGGAGCAT 60.039 55.000 12.10 0.00 0.00 3.79
306 307 1.695813 CGCGAGATAGAAGGAGCATG 58.304 55.000 0.00 0.00 0.00 4.06
307 308 1.668337 CGCGAGATAGAAGGAGCATGG 60.668 57.143 0.00 0.00 0.00 3.66
308 309 1.615883 GCGAGATAGAAGGAGCATGGA 59.384 52.381 0.00 0.00 0.00 3.41
309 310 2.352617 GCGAGATAGAAGGAGCATGGAG 60.353 54.545 0.00 0.00 0.00 3.86
310 311 2.230992 CGAGATAGAAGGAGCATGGAGG 59.769 54.545 0.00 0.00 0.00 4.30
311 312 1.977129 AGATAGAAGGAGCATGGAGGC 59.023 52.381 0.00 0.00 0.00 4.70
312 313 0.683973 ATAGAAGGAGCATGGAGGCG 59.316 55.000 0.00 0.00 39.27 5.52
313 314 1.402896 TAGAAGGAGCATGGAGGCGG 61.403 60.000 0.00 0.00 39.27 6.13
314 315 3.764160 GAAGGAGCATGGAGGCGGG 62.764 68.421 0.00 0.00 39.27 6.13
317 318 4.864334 GAGCATGGAGGCGGGGTG 62.864 72.222 0.00 0.00 39.27 4.61
327 328 3.770040 GCGGGGTGGCCAATTTCC 61.770 66.667 7.24 3.69 0.00 3.13
328 329 3.448340 CGGGGTGGCCAATTTCCG 61.448 66.667 7.24 14.90 0.00 4.30
329 330 3.770040 GGGGTGGCCAATTTCCGC 61.770 66.667 7.24 9.56 0.00 5.54
330 331 4.128388 GGGTGGCCAATTTCCGCG 62.128 66.667 7.24 0.00 35.03 6.46
331 332 3.059386 GGTGGCCAATTTCCGCGA 61.059 61.111 7.24 0.00 35.03 5.87
332 333 2.631580 GGTGGCCAATTTCCGCGAA 61.632 57.895 7.24 0.00 35.03 4.70
333 334 1.287503 GTGGCCAATTTCCGCGAAA 59.712 52.632 7.24 6.95 35.94 3.46
334 335 0.319125 GTGGCCAATTTCCGCGAAAA 60.319 50.000 7.24 0.00 35.11 2.29
335 336 0.319125 TGGCCAATTTCCGCGAAAAC 60.319 50.000 8.23 0.00 35.11 2.43
336 337 0.319125 GGCCAATTTCCGCGAAAACA 60.319 50.000 8.23 0.00 35.11 2.83
337 338 1.059942 GCCAATTTCCGCGAAAACAG 58.940 50.000 8.23 0.00 35.11 3.16
338 339 1.335506 GCCAATTTCCGCGAAAACAGA 60.336 47.619 8.23 0.00 35.11 3.41
339 340 2.584791 CCAATTTCCGCGAAAACAGAG 58.415 47.619 8.23 0.00 35.11 3.35
340 341 2.225491 CCAATTTCCGCGAAAACAGAGA 59.775 45.455 8.23 0.00 35.11 3.10
341 342 3.226347 CAATTTCCGCGAAAACAGAGAC 58.774 45.455 8.23 0.00 35.11 3.36
342 343 0.856641 TTTCCGCGAAAACAGAGACG 59.143 50.000 8.23 0.00 0.00 4.18
343 344 0.942410 TTCCGCGAAAACAGAGACGG 60.942 55.000 8.23 0.00 41.92 4.79
344 345 2.470286 CGCGAAAACAGAGACGGC 59.530 61.111 0.00 0.00 0.00 5.68
345 346 2.470286 GCGAAAACAGAGACGGCG 59.530 61.111 4.80 4.80 0.00 6.46
346 347 3.011760 GCGAAAACAGAGACGGCGG 62.012 63.158 13.24 0.00 0.00 6.13
347 348 2.380410 CGAAAACAGAGACGGCGGG 61.380 63.158 13.24 0.00 0.00 6.13
348 349 2.668550 AAAACAGAGACGGCGGGC 60.669 61.111 13.24 2.27 0.00 6.13
349 350 3.178540 AAAACAGAGACGGCGGGCT 62.179 57.895 13.24 8.23 0.00 5.19
350 351 3.591254 AAACAGAGACGGCGGGCTC 62.591 63.158 19.05 19.05 0.00 4.70
363 364 4.899239 GGCTCGGCATCGTGGGAG 62.899 72.222 0.00 0.00 37.69 4.30
364 365 4.899239 GCTCGGCATCGTGGGAGG 62.899 72.222 0.00 0.00 37.69 4.30
365 366 4.227134 CTCGGCATCGTGGGAGGG 62.227 72.222 0.00 0.00 37.69 4.30
366 367 4.770362 TCGGCATCGTGGGAGGGA 62.770 66.667 0.00 0.00 37.69 4.20
367 368 4.530857 CGGCATCGTGGGAGGGAC 62.531 72.222 0.00 0.00 0.00 4.46
368 369 4.530857 GGCATCGTGGGAGGGACG 62.531 72.222 0.00 0.00 38.20 4.79
370 371 4.873129 CATCGTGGGAGGGACGCG 62.873 72.222 3.53 3.53 42.68 6.01
385 386 4.065110 GCGCAAGTGAAAGGGAGT 57.935 55.556 0.30 0.00 41.68 3.85
386 387 2.331265 GCGCAAGTGAAAGGGAGTT 58.669 52.632 0.30 0.00 41.68 3.01
387 388 0.668535 GCGCAAGTGAAAGGGAGTTT 59.331 50.000 0.30 0.00 41.68 2.66
388 389 1.600413 GCGCAAGTGAAAGGGAGTTTG 60.600 52.381 0.30 0.00 41.68 2.93
389 390 1.600413 CGCAAGTGAAAGGGAGTTTGC 60.600 52.381 0.00 0.00 37.98 3.68
390 391 1.269778 GCAAGTGAAAGGGAGTTTGCC 60.270 52.381 0.00 0.00 35.98 4.52
391 392 2.031120 CAAGTGAAAGGGAGTTTGCCA 58.969 47.619 0.00 0.00 0.00 4.92
392 393 2.430332 CAAGTGAAAGGGAGTTTGCCAA 59.570 45.455 0.00 0.00 0.00 4.52
393 394 2.745968 AGTGAAAGGGAGTTTGCCAAA 58.254 42.857 0.00 0.00 0.00 3.28
394 395 2.430694 AGTGAAAGGGAGTTTGCCAAAC 59.569 45.455 12.37 12.37 41.69 2.93
395 396 2.167487 GTGAAAGGGAGTTTGCCAAACA 59.833 45.455 21.45 0.00 43.79 2.83
396 397 2.430332 TGAAAGGGAGTTTGCCAAACAG 59.570 45.455 21.45 0.00 43.79 3.16
397 398 0.752658 AAGGGAGTTTGCCAAACAGC 59.247 50.000 21.45 12.72 43.79 4.40
398 399 1.007387 GGGAGTTTGCCAAACAGCG 60.007 57.895 21.45 0.00 43.79 5.18
399 400 1.661509 GGAGTTTGCCAAACAGCGC 60.662 57.895 21.45 0.00 43.79 5.92
400 401 1.360192 GAGTTTGCCAAACAGCGCT 59.640 52.632 21.45 2.64 43.79 5.92
401 402 0.591170 GAGTTTGCCAAACAGCGCTA 59.409 50.000 21.45 0.00 43.79 4.26
402 403 1.200020 GAGTTTGCCAAACAGCGCTAT 59.800 47.619 21.45 0.00 43.79 2.97
403 404 1.200020 AGTTTGCCAAACAGCGCTATC 59.800 47.619 21.45 0.00 43.79 2.08
404 405 0.525761 TTTGCCAAACAGCGCTATCC 59.474 50.000 10.99 0.00 34.65 2.59
405 406 1.643868 TTGCCAAACAGCGCTATCCG 61.644 55.000 10.99 0.00 40.75 4.18
406 407 2.823829 GCCAAACAGCGCTATCCGG 61.824 63.158 10.99 10.35 37.44 5.14
424 425 2.607771 CCGGTGGCTTCAATTTCAGTTG 60.608 50.000 0.00 0.00 0.00 3.16
504 516 1.716028 GGATTAGGGATTGGGGCCGT 61.716 60.000 0.00 0.00 0.00 5.68
562 576 1.036481 GGGGTACTGACTCTCCGACC 61.036 65.000 0.00 0.00 0.00 4.79
779 816 3.414700 CGTTGGCTCTGACACCGC 61.415 66.667 0.00 0.00 0.00 5.68
781 818 1.292223 GTTGGCTCTGACACCGCTA 59.708 57.895 0.00 0.00 0.00 4.26
841 879 2.759973 TCTCGAGGATGGCCGCTT 60.760 61.111 13.56 0.00 39.96 4.68
887 2769 1.474478 GAGCTGGAACTCTCGATGTGA 59.526 52.381 0.00 0.00 33.69 3.58
894 2776 2.110901 ACTCTCGATGTGACCGTACT 57.889 50.000 0.00 0.00 0.00 2.73
949 2831 1.303282 GAATCCCGAGCCCACCTTT 59.697 57.895 0.00 0.00 0.00 3.11
950 2832 1.000896 AATCCCGAGCCCACCTTTG 60.001 57.895 0.00 0.00 0.00 2.77
1033 2918 2.415010 CGGGATCAGCAGACGAGG 59.585 66.667 0.00 0.00 0.00 4.63
1171 3056 9.856162 TGGTATAAAATAAATTGTACTCCCTCC 57.144 33.333 0.00 0.00 30.36 4.30
1172 3057 8.996271 GGTATAAAATAAATTGTACTCCCTCCG 58.004 37.037 0.00 0.00 30.36 4.63
1173 3058 9.551734 GTATAAAATAAATTGTACTCCCTCCGT 57.448 33.333 0.00 0.00 0.00 4.69
1174 3059 6.997239 AAAATAAATTGTACTCCCTCCGTC 57.003 37.500 0.00 0.00 0.00 4.79
1175 3060 4.684484 ATAAATTGTACTCCCTCCGTCC 57.316 45.455 0.00 0.00 0.00 4.79
1176 3061 1.201424 AATTGTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
1177 3062 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
1178 3063 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
1179 3064 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
1180 3065 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
1181 3066 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
1182 3067 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
1183 3068 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1184 3069 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1185 3070 4.611367 ACTCCCTCCGTCCCATAATATAG 58.389 47.826 0.00 0.00 0.00 1.31
1186 3071 4.045590 ACTCCCTCCGTCCCATAATATAGT 59.954 45.833 0.00 0.00 0.00 2.12
1187 3072 4.350245 TCCCTCCGTCCCATAATATAGTG 58.650 47.826 0.00 0.00 0.00 2.74
1188 3073 4.094476 CCCTCCGTCCCATAATATAGTGT 58.906 47.826 0.00 0.00 0.00 3.55
1189 3074 4.159879 CCCTCCGTCCCATAATATAGTGTC 59.840 50.000 0.00 0.00 0.00 3.67
1190 3075 4.770531 CCTCCGTCCCATAATATAGTGTCA 59.229 45.833 0.00 0.00 0.00 3.58
1191 3076 5.245301 CCTCCGTCCCATAATATAGTGTCAA 59.755 44.000 0.00 0.00 0.00 3.18
1192 3077 6.239487 CCTCCGTCCCATAATATAGTGTCAAA 60.239 42.308 0.00 0.00 0.00 2.69
1193 3078 7.127012 TCCGTCCCATAATATAGTGTCAAAA 57.873 36.000 0.00 0.00 0.00 2.44
1194 3079 7.566569 TCCGTCCCATAATATAGTGTCAAAAA 58.433 34.615 0.00 0.00 0.00 1.94
1216 3101 8.795842 AAAAACGTCTTACATACATTATGGGA 57.204 30.769 0.00 0.00 40.47 4.37
1217 3102 7.781548 AAACGTCTTACATACATTATGGGAC 57.218 36.000 0.00 3.34 40.47 4.46
1219 3104 4.921515 CGTCTTACATACATTATGGGACGG 59.078 45.833 19.21 9.52 44.12 4.79
1220 3105 5.278610 CGTCTTACATACATTATGGGACGGA 60.279 44.000 19.21 3.55 44.12 4.69
1221 3106 6.157211 GTCTTACATACATTATGGGACGGAG 58.843 44.000 0.00 0.00 40.47 4.63
1222 3107 5.245301 TCTTACATACATTATGGGACGGAGG 59.755 44.000 0.00 0.00 40.47 4.30
1223 3108 2.637872 ACATACATTATGGGACGGAGGG 59.362 50.000 0.00 0.00 40.47 4.30
1224 3109 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
1234 3119 0.386113 GACGGAGGGAGTAGATGTGC 59.614 60.000 0.00 0.00 0.00 4.57
1243 3128 3.447586 GGGAGTAGATGTGCTGTTCAGTA 59.552 47.826 1.78 0.00 0.00 2.74
1253 3138 3.380320 GTGCTGTTCAGTACACCCTTTTT 59.620 43.478 14.26 0.00 32.10 1.94
1258 3143 6.861572 GCTGTTCAGTACACCCTTTTTAATTC 59.138 38.462 0.00 0.00 32.10 2.17
1263 3148 9.589111 TTCAGTACACCCTTTTTAATTCAAAAC 57.411 29.630 0.00 0.00 35.84 2.43
1265 3150 5.977171 ACACCCTTTTTAATTCAAAACGC 57.023 34.783 0.00 0.00 35.84 4.84
1296 3181 6.717997 TGCTCATTATGCCATGATATCTGTTT 59.282 34.615 3.98 0.00 32.59 2.83
1336 3221 5.182487 ACATCATGCGGTGTTGAATAAGTA 58.818 37.500 6.90 0.00 32.89 2.24
1360 3245 6.976934 AAAATAGGAAGAACTTGCCAGAAA 57.023 33.333 2.66 0.00 0.00 2.52
1361 3246 6.976934 AAATAGGAAGAACTTGCCAGAAAA 57.023 33.333 2.66 0.00 0.00 2.29
1362 3247 6.976934 AATAGGAAGAACTTGCCAGAAAAA 57.023 33.333 2.66 0.00 0.00 1.94
1402 3287 2.422803 CCTGGGAAAGGTCACACTGAAA 60.423 50.000 0.00 0.00 41.74 2.69
1460 3345 6.209192 AATGTTCAGTTAAGATTGATGGCACA 59.791 34.615 0.00 0.00 34.17 4.57
1499 3384 3.344904 GCAATGCTATGCGTTCATCTT 57.655 42.857 0.00 0.00 35.42 2.40
1552 3437 9.780186 GCTAATATCTATTGAAACAACTACCCT 57.220 33.333 0.00 0.00 0.00 4.34
1568 3453 5.281314 ACTACCCTCCTTCAGTCATGTTAT 58.719 41.667 0.00 0.00 0.00 1.89
1616 3501 7.587037 TCTTTTTCTTCTGGAAACATCATGT 57.413 32.000 0.00 0.00 42.80 3.21
1778 3667 8.375465 GCACATGTTATCTTTATTTTCAAGCAC 58.625 33.333 0.00 0.00 0.00 4.40
1856 3769 2.154462 ACGGGCAATTCTTCAGTCAAG 58.846 47.619 0.00 0.00 0.00 3.02
1995 3908 0.321122 GATGGAGGCGCTTATGGAGG 60.321 60.000 7.64 0.00 0.00 4.30
2081 3994 1.066143 ACCAATGCGGGACTACTTCAG 60.066 52.381 0.00 0.00 40.22 3.02
2183 4096 1.475751 CCTTGTGTTCTCAGGCAGTGT 60.476 52.381 0.00 0.00 0.00 3.55
2241 4154 1.474677 GCAGCTCAGCATGGTATCAGT 60.475 52.381 0.00 0.00 36.16 3.41
2244 4157 2.158986 AGCTCAGCATGGTATCAGTGAC 60.159 50.000 0.00 0.00 36.16 3.67
2298 4211 0.106217 AGTTCCCCTGGTGGTTGTTG 60.106 55.000 0.00 0.00 0.00 3.33
2306 4219 2.159254 CCTGGTGGTTGTTGTCTGTTTG 60.159 50.000 0.00 0.00 0.00 2.93
2310 4223 1.476085 TGGTTGTTGTCTGTTTGCAGG 59.524 47.619 0.00 0.00 42.78 4.85
2317 4230 1.155042 GTCTGTTTGCAGGAGCTCAG 58.845 55.000 17.19 8.60 42.78 3.35
2399 4312 1.692411 GGTTCCCTCACAAAGCTTGT 58.308 50.000 0.00 0.00 46.75 3.16
2996 4910 7.329717 CACTGAGAACTACTGTAAGATTGGTTC 59.670 40.741 7.08 7.08 37.43 3.62
3018 4936 4.469945 TCCCCCTCTTGTATTCTGTACTTG 59.530 45.833 0.00 0.00 0.00 3.16
3397 5348 5.220739 GCATGTCATCTGTGAACTATTGGAC 60.221 44.000 0.00 0.00 35.80 4.02
3750 5703 4.730966 TGCCTTTAACATTTCCAGGTACA 58.269 39.130 0.00 0.00 0.00 2.90
3909 5862 5.600669 TGTAGGGCTCCTAATCTGAGATA 57.399 43.478 0.00 0.00 37.91 1.98
3928 5881 5.574188 AGATATTTGTCCTTCAACCAAGCT 58.426 37.500 0.00 0.00 35.61 3.74
4097 6620 6.891908 AGGTACTTTCCGTACTCCTATTTGTA 59.108 38.462 0.00 0.00 46.19 2.41
4131 6654 8.684520 TGACATGTGACATTGCATAATTAATGA 58.315 29.630 1.15 0.00 37.86 2.57
4133 6656 8.689061 ACATGTGACATTGCATAATTAATGACT 58.311 29.630 0.00 0.00 37.86 3.41
4207 6730 7.648908 TGCTTCTCACAATTTGTAATTTGAGTG 59.351 33.333 0.86 4.31 0.00 3.51
4431 6955 1.135603 CAATTCCCGCATGAGTGTGTG 60.136 52.381 0.00 0.00 33.99 3.82
4441 6965 0.686789 TGAGTGTGTGCATGCTACCT 59.313 50.000 20.33 15.39 0.00 3.08
4470 6995 2.296190 GGTGTTCCGCTCAAAAGGAAAT 59.704 45.455 0.00 0.00 46.74 2.17
4540 7065 1.813513 AGTGCACTCATGGTTGTAGC 58.186 50.000 15.25 0.00 0.00 3.58
4623 7148 6.094048 ACATGTTCCCACTTTGAGATATTTCG 59.906 38.462 0.00 0.00 0.00 3.46
4734 7262 7.553881 AAATCACTGGTAGATATTGAAACCG 57.446 36.000 0.00 0.00 34.60 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.950210 GCATATATTGTGATTTACAGTAGGCAT 58.050 33.333 0.00 0.00 41.10 4.40
1 2 8.156820 AGCATATATTGTGATTTACAGTAGGCA 58.843 33.333 8.71 0.00 41.10 4.75
2 3 8.553459 AGCATATATTGTGATTTACAGTAGGC 57.447 34.615 0.00 0.00 41.10 3.93
3 4 9.710900 TGAGCATATATTGTGATTTACAGTAGG 57.289 33.333 0.00 0.00 41.10 3.18
6 7 8.962884 TGTGAGCATATATTGTGATTTACAGT 57.037 30.769 0.00 0.00 41.10 3.55
25 26 9.173939 GCAATGTATAGTCATTAAAATGTGAGC 57.826 33.333 2.80 0.00 36.44 4.26
62 63 7.419204 TGACCTTTCGAATATTTCACGTTTTT 58.581 30.769 0.00 0.00 0.00 1.94
63 64 6.961576 TGACCTTTCGAATATTTCACGTTTT 58.038 32.000 0.00 0.00 0.00 2.43
64 65 6.548441 TGACCTTTCGAATATTTCACGTTT 57.452 33.333 0.00 0.00 0.00 3.60
65 66 6.737254 ATGACCTTTCGAATATTTCACGTT 57.263 33.333 0.00 0.00 0.00 3.99
66 67 6.370442 TGAATGACCTTTCGAATATTTCACGT 59.630 34.615 0.00 0.00 0.00 4.49
67 68 6.771076 TGAATGACCTTTCGAATATTTCACG 58.229 36.000 0.00 0.00 0.00 4.35
76 77 9.830975 TCAGAATATTATGAATGACCTTTCGAA 57.169 29.630 10.29 0.00 0.00 3.71
77 78 9.830975 TTCAGAATATTATGAATGACCTTTCGA 57.169 29.630 19.06 0.00 33.88 3.71
97 98 9.179909 TGTACCTGTTTTCTACATTTTTCAGAA 57.820 29.630 0.00 0.00 35.85 3.02
98 99 8.740123 TGTACCTGTTTTCTACATTTTTCAGA 57.260 30.769 0.00 0.00 35.85 3.27
99 100 8.621286 ACTGTACCTGTTTTCTACATTTTTCAG 58.379 33.333 0.00 0.00 35.85 3.02
100 101 8.514330 ACTGTACCTGTTTTCTACATTTTTCA 57.486 30.769 0.00 0.00 35.85 2.69
101 102 9.874215 GTACTGTACCTGTTTTCTACATTTTTC 57.126 33.333 6.70 0.00 35.85 2.29
102 103 9.623000 AGTACTGTACCTGTTTTCTACATTTTT 57.377 29.630 14.05 0.00 35.85 1.94
104 105 9.702494 GTAGTACTGTACCTGTTTTCTACATTT 57.298 33.333 14.05 0.00 35.85 2.32
105 106 9.086758 AGTAGTACTGTACCTGTTTTCTACATT 57.913 33.333 14.05 0.00 35.85 2.71
106 107 8.647256 AGTAGTACTGTACCTGTTTTCTACAT 57.353 34.615 14.05 0.00 35.85 2.29
107 108 7.175641 GGAGTAGTACTGTACCTGTTTTCTACA 59.824 40.741 7.76 0.00 34.95 2.74
108 109 7.362487 GGGAGTAGTACTGTACCTGTTTTCTAC 60.362 44.444 7.76 7.73 0.00 2.59
109 110 6.660949 GGGAGTAGTACTGTACCTGTTTTCTA 59.339 42.308 7.76 0.00 0.00 2.10
110 111 5.479724 GGGAGTAGTACTGTACCTGTTTTCT 59.520 44.000 7.76 0.00 0.00 2.52
111 112 5.479724 AGGGAGTAGTACTGTACCTGTTTTC 59.520 44.000 7.76 4.64 0.00 2.29
112 113 5.400870 AGGGAGTAGTACTGTACCTGTTTT 58.599 41.667 7.76 0.00 0.00 2.43
113 114 5.008165 AGGGAGTAGTACTGTACCTGTTT 57.992 43.478 7.76 0.00 0.00 2.83
114 115 4.569440 GGAGGGAGTAGTACTGTACCTGTT 60.569 50.000 14.25 0.00 0.00 3.16
115 116 3.053768 GGAGGGAGTAGTACTGTACCTGT 60.054 52.174 14.25 0.00 0.00 4.00
116 117 3.553904 GGAGGGAGTAGTACTGTACCTG 58.446 54.545 14.25 0.00 0.00 4.00
117 118 2.172293 CGGAGGGAGTAGTACTGTACCT 59.828 54.545 7.76 12.01 0.00 3.08
118 119 2.092699 ACGGAGGGAGTAGTACTGTACC 60.093 54.545 7.76 7.31 0.00 3.34
119 120 3.202097 GACGGAGGGAGTAGTACTGTAC 58.798 54.545 7.76 9.93 0.00 2.90
120 121 2.171448 GGACGGAGGGAGTAGTACTGTA 59.829 54.545 7.76 0.00 0.00 2.74
121 122 1.064832 GGACGGAGGGAGTAGTACTGT 60.065 57.143 7.76 0.00 0.00 3.55
122 123 1.677942 GGACGGAGGGAGTAGTACTG 58.322 60.000 7.76 0.00 0.00 2.74
123 124 0.550432 GGGACGGAGGGAGTAGTACT 59.450 60.000 1.37 1.37 0.00 2.73
124 125 0.257039 TGGGACGGAGGGAGTAGTAC 59.743 60.000 0.00 0.00 0.00 2.73
125 126 1.229131 ATGGGACGGAGGGAGTAGTA 58.771 55.000 0.00 0.00 0.00 1.82
126 127 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
127 128 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
128 129 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
129 130 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
130 131 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
131 132 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
132 133 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
133 134 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
134 135 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
135 136 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
136 137 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
137 138 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
138 139 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
139 140 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
140 141 7.925993 TGTCAAAAACGCTCTTATATTATGGG 58.074 34.615 0.00 0.00 0.00 4.00
145 146 8.567948 CCCATATGTCAAAAACGCTCTTATATT 58.432 33.333 1.24 0.00 0.00 1.28
146 147 7.174946 CCCCATATGTCAAAAACGCTCTTATAT 59.825 37.037 1.24 0.00 0.00 0.86
147 148 6.485313 CCCCATATGTCAAAAACGCTCTTATA 59.515 38.462 1.24 0.00 0.00 0.98
148 149 5.299279 CCCCATATGTCAAAAACGCTCTTAT 59.701 40.000 1.24 0.00 0.00 1.73
149 150 4.638421 CCCCATATGTCAAAAACGCTCTTA 59.362 41.667 1.24 0.00 0.00 2.10
150 151 3.443681 CCCCATATGTCAAAAACGCTCTT 59.556 43.478 1.24 0.00 0.00 2.85
151 152 3.016736 CCCCATATGTCAAAAACGCTCT 58.983 45.455 1.24 0.00 0.00 4.09
152 153 2.479560 GCCCCATATGTCAAAAACGCTC 60.480 50.000 1.24 0.00 0.00 5.03
153 154 1.476488 GCCCCATATGTCAAAAACGCT 59.524 47.619 1.24 0.00 0.00 5.07
154 155 1.797348 CGCCCCATATGTCAAAAACGC 60.797 52.381 1.24 0.00 0.00 4.84
155 156 1.202245 CCGCCCCATATGTCAAAAACG 60.202 52.381 1.24 0.00 0.00 3.60
156 157 2.096248 TCCGCCCCATATGTCAAAAAC 58.904 47.619 1.24 0.00 0.00 2.43
157 158 2.374184 CTCCGCCCCATATGTCAAAAA 58.626 47.619 1.24 0.00 0.00 1.94
158 159 1.409521 CCTCCGCCCCATATGTCAAAA 60.410 52.381 1.24 0.00 0.00 2.44
159 160 0.182537 CCTCCGCCCCATATGTCAAA 59.817 55.000 1.24 0.00 0.00 2.69
160 161 1.705002 CCCTCCGCCCCATATGTCAA 61.705 60.000 1.24 0.00 0.00 3.18
161 162 2.146724 CCCTCCGCCCCATATGTCA 61.147 63.158 1.24 0.00 0.00 3.58
162 163 1.831652 CTCCCTCCGCCCCATATGTC 61.832 65.000 1.24 0.00 0.00 3.06
163 164 1.843376 CTCCCTCCGCCCCATATGT 60.843 63.158 1.24 0.00 0.00 2.29
164 165 0.544357 TACTCCCTCCGCCCCATATG 60.544 60.000 0.00 0.00 0.00 1.78
165 166 0.252284 CTACTCCCTCCGCCCCATAT 60.252 60.000 0.00 0.00 0.00 1.78
166 167 1.155390 CTACTCCCTCCGCCCCATA 59.845 63.158 0.00 0.00 0.00 2.74
167 168 2.122813 CTACTCCCTCCGCCCCAT 60.123 66.667 0.00 0.00 0.00 4.00
168 169 3.248248 AACTACTCCCTCCGCCCCA 62.248 63.158 0.00 0.00 0.00 4.96
169 170 2.365237 AACTACTCCCTCCGCCCC 60.365 66.667 0.00 0.00 0.00 5.80
170 171 1.551019 AACAACTACTCCCTCCGCCC 61.551 60.000 0.00 0.00 0.00 6.13
171 172 1.136500 CTAACAACTACTCCCTCCGCC 59.864 57.143 0.00 0.00 0.00 6.13
172 173 1.136500 CCTAACAACTACTCCCTCCGC 59.864 57.143 0.00 0.00 0.00 5.54
173 174 2.688958 CTCCTAACAACTACTCCCTCCG 59.311 54.545 0.00 0.00 0.00 4.63
174 175 3.032459 CCTCCTAACAACTACTCCCTCC 58.968 54.545 0.00 0.00 0.00 4.30
175 176 3.700539 GACCTCCTAACAACTACTCCCTC 59.299 52.174 0.00 0.00 0.00 4.30
176 177 3.710724 GACCTCCTAACAACTACTCCCT 58.289 50.000 0.00 0.00 0.00 4.20
177 178 2.426381 CGACCTCCTAACAACTACTCCC 59.574 54.545 0.00 0.00 0.00 4.30
178 179 3.350833 TCGACCTCCTAACAACTACTCC 58.649 50.000 0.00 0.00 0.00 3.85
179 180 4.260170 TCTCGACCTCCTAACAACTACTC 58.740 47.826 0.00 0.00 0.00 2.59
180 181 4.263435 CTCTCGACCTCCTAACAACTACT 58.737 47.826 0.00 0.00 0.00 2.57
181 182 3.377798 CCTCTCGACCTCCTAACAACTAC 59.622 52.174 0.00 0.00 0.00 2.73
182 183 3.618351 CCTCTCGACCTCCTAACAACTA 58.382 50.000 0.00 0.00 0.00 2.24
183 184 2.448453 CCTCTCGACCTCCTAACAACT 58.552 52.381 0.00 0.00 0.00 3.16
184 185 1.477295 CCCTCTCGACCTCCTAACAAC 59.523 57.143 0.00 0.00 0.00 3.32
185 186 1.618888 CCCCTCTCGACCTCCTAACAA 60.619 57.143 0.00 0.00 0.00 2.83
186 187 0.033405 CCCCTCTCGACCTCCTAACA 60.033 60.000 0.00 0.00 0.00 2.41
187 188 0.033306 ACCCCTCTCGACCTCCTAAC 60.033 60.000 0.00 0.00 0.00 2.34
188 189 0.708802 AACCCCTCTCGACCTCCTAA 59.291 55.000 0.00 0.00 0.00 2.69
189 190 1.493871 CTAACCCCTCTCGACCTCCTA 59.506 57.143 0.00 0.00 0.00 2.94
190 191 0.259356 CTAACCCCTCTCGACCTCCT 59.741 60.000 0.00 0.00 0.00 3.69
191 192 0.756070 CCTAACCCCTCTCGACCTCC 60.756 65.000 0.00 0.00 0.00 4.30
192 193 0.756070 CCCTAACCCCTCTCGACCTC 60.756 65.000 0.00 0.00 0.00 3.85
193 194 1.310373 CCCTAACCCCTCTCGACCT 59.690 63.158 0.00 0.00 0.00 3.85
194 195 0.616964 AACCCTAACCCCTCTCGACC 60.617 60.000 0.00 0.00 0.00 4.79
195 196 1.273759 AAACCCTAACCCCTCTCGAC 58.726 55.000 0.00 0.00 0.00 4.20
196 197 2.043526 ACTAAACCCTAACCCCTCTCGA 59.956 50.000 0.00 0.00 0.00 4.04
197 198 2.464782 ACTAAACCCTAACCCCTCTCG 58.535 52.381 0.00 0.00 0.00 4.04
198 199 5.071519 GGATTACTAAACCCTAACCCCTCTC 59.928 48.000 0.00 0.00 0.00 3.20
199 200 4.973856 GGATTACTAAACCCTAACCCCTCT 59.026 45.833 0.00 0.00 0.00 3.69
200 201 4.103785 GGGATTACTAAACCCTAACCCCTC 59.896 50.000 6.85 0.00 40.39 4.30
201 202 4.050037 GGGATTACTAAACCCTAACCCCT 58.950 47.826 6.85 0.00 40.39 4.79
202 203 3.787577 TGGGATTACTAAACCCTAACCCC 59.212 47.826 13.80 0.00 43.59 4.95
203 204 5.455392 TTGGGATTACTAAACCCTAACCC 57.545 43.478 13.80 0.00 43.59 4.11
204 205 6.261603 CGATTTGGGATTACTAAACCCTAACC 59.738 42.308 13.80 4.64 43.59 2.85
205 206 6.825213 ACGATTTGGGATTACTAAACCCTAAC 59.175 38.462 13.80 7.70 43.59 2.34
206 207 6.961042 ACGATTTGGGATTACTAAACCCTAA 58.039 36.000 13.80 12.66 43.59 2.69
207 208 6.564557 ACGATTTGGGATTACTAAACCCTA 57.435 37.500 13.80 5.20 43.59 3.53
208 209 5.446260 ACGATTTGGGATTACTAAACCCT 57.554 39.130 13.80 0.00 43.59 4.34
209 210 6.825213 ACTTACGATTTGGGATTACTAAACCC 59.175 38.462 7.12 7.12 43.51 4.11
210 211 7.854557 ACTTACGATTTGGGATTACTAAACC 57.145 36.000 0.00 0.00 0.00 3.27
211 212 8.546244 GCTACTTACGATTTGGGATTACTAAAC 58.454 37.037 0.00 0.00 0.00 2.01
212 213 8.259411 TGCTACTTACGATTTGGGATTACTAAA 58.741 33.333 0.00 0.00 0.00 1.85
213 214 7.784037 TGCTACTTACGATTTGGGATTACTAA 58.216 34.615 0.00 0.00 0.00 2.24
214 215 7.350744 TGCTACTTACGATTTGGGATTACTA 57.649 36.000 0.00 0.00 0.00 1.82
215 216 6.229936 TGCTACTTACGATTTGGGATTACT 57.770 37.500 0.00 0.00 0.00 2.24
216 217 6.759827 TCTTGCTACTTACGATTTGGGATTAC 59.240 38.462 0.00 0.00 0.00 1.89
217 218 6.880484 TCTTGCTACTTACGATTTGGGATTA 58.120 36.000 0.00 0.00 0.00 1.75
218 219 5.741011 TCTTGCTACTTACGATTTGGGATT 58.259 37.500 0.00 0.00 0.00 3.01
219 220 5.353394 TCTTGCTACTTACGATTTGGGAT 57.647 39.130 0.00 0.00 0.00 3.85
220 221 4.811969 TCTTGCTACTTACGATTTGGGA 57.188 40.909 0.00 0.00 0.00 4.37
221 222 4.876107 ACATCTTGCTACTTACGATTTGGG 59.124 41.667 0.00 0.00 0.00 4.12
222 223 6.201044 CCTACATCTTGCTACTTACGATTTGG 59.799 42.308 0.00 0.00 0.00 3.28
223 224 6.757010 ACCTACATCTTGCTACTTACGATTTG 59.243 38.462 0.00 0.00 0.00 2.32
224 225 6.757010 CACCTACATCTTGCTACTTACGATTT 59.243 38.462 0.00 0.00 0.00 2.17
225 226 6.273825 CACCTACATCTTGCTACTTACGATT 58.726 40.000 0.00 0.00 0.00 3.34
226 227 5.736492 GCACCTACATCTTGCTACTTACGAT 60.736 44.000 0.00 0.00 33.26 3.73
227 228 4.439700 GCACCTACATCTTGCTACTTACGA 60.440 45.833 0.00 0.00 33.26 3.43
228 229 3.797256 GCACCTACATCTTGCTACTTACG 59.203 47.826 0.00 0.00 33.26 3.18
229 230 3.797256 CGCACCTACATCTTGCTACTTAC 59.203 47.826 0.00 0.00 33.90 2.34
230 231 3.446161 ACGCACCTACATCTTGCTACTTA 59.554 43.478 0.00 0.00 33.90 2.24
231 232 2.233922 ACGCACCTACATCTTGCTACTT 59.766 45.455 0.00 0.00 33.90 2.24
232 233 1.825474 ACGCACCTACATCTTGCTACT 59.175 47.619 0.00 0.00 33.90 2.57
233 234 2.159226 AGACGCACCTACATCTTGCTAC 60.159 50.000 0.00 0.00 33.90 3.58
234 235 2.100197 AGACGCACCTACATCTTGCTA 58.900 47.619 0.00 0.00 33.90 3.49
235 236 0.898320 AGACGCACCTACATCTTGCT 59.102 50.000 0.00 0.00 33.90 3.91
236 237 1.002366 CAGACGCACCTACATCTTGC 58.998 55.000 0.00 0.00 0.00 4.01
237 238 2.370281 ACAGACGCACCTACATCTTG 57.630 50.000 0.00 0.00 0.00 3.02
238 239 2.671351 CGAACAGACGCACCTACATCTT 60.671 50.000 0.00 0.00 0.00 2.40
239 240 1.135373 CGAACAGACGCACCTACATCT 60.135 52.381 0.00 0.00 0.00 2.90
240 241 1.269166 CGAACAGACGCACCTACATC 58.731 55.000 0.00 0.00 0.00 3.06
241 242 0.108804 CCGAACAGACGCACCTACAT 60.109 55.000 0.00 0.00 0.00 2.29
242 243 1.287815 CCGAACAGACGCACCTACA 59.712 57.895 0.00 0.00 0.00 2.74
243 244 0.731855 GACCGAACAGACGCACCTAC 60.732 60.000 0.00 0.00 0.00 3.18
244 245 1.582968 GACCGAACAGACGCACCTA 59.417 57.895 0.00 0.00 0.00 3.08
245 246 2.338984 GACCGAACAGACGCACCT 59.661 61.111 0.00 0.00 0.00 4.00
246 247 3.103911 CGACCGAACAGACGCACC 61.104 66.667 0.00 0.00 0.00 5.01
247 248 2.050714 TCGACCGAACAGACGCAC 60.051 61.111 0.00 0.00 0.00 5.34
248 249 2.254350 CTCGACCGAACAGACGCA 59.746 61.111 0.00 0.00 0.00 5.24
249 250 2.467946 TTCCTCGACCGAACAGACGC 62.468 60.000 0.00 0.00 0.00 5.19
250 251 0.039798 TTTCCTCGACCGAACAGACG 60.040 55.000 0.00 0.00 0.00 4.18
251 252 2.365408 ATTTCCTCGACCGAACAGAC 57.635 50.000 0.00 0.00 0.00 3.51
252 253 2.611971 CCAATTTCCTCGACCGAACAGA 60.612 50.000 0.00 0.00 0.00 3.41
253 254 1.732259 CCAATTTCCTCGACCGAACAG 59.268 52.381 0.00 0.00 0.00 3.16
254 255 1.609580 CCCAATTTCCTCGACCGAACA 60.610 52.381 0.00 0.00 0.00 3.18
255 256 1.084289 CCCAATTTCCTCGACCGAAC 58.916 55.000 0.00 0.00 0.00 3.95
256 257 0.035820 CCCCAATTTCCTCGACCGAA 60.036 55.000 0.00 0.00 0.00 4.30
257 258 1.196104 ACCCCAATTTCCTCGACCGA 61.196 55.000 0.00 0.00 0.00 4.69
258 259 1.024579 CACCCCAATTTCCTCGACCG 61.025 60.000 0.00 0.00 0.00 4.79
259 260 0.679960 CCACCCCAATTTCCTCGACC 60.680 60.000 0.00 0.00 0.00 4.79
260 261 0.679960 CCCACCCCAATTTCCTCGAC 60.680 60.000 0.00 0.00 0.00 4.20
261 262 1.688811 CCCACCCCAATTTCCTCGA 59.311 57.895 0.00 0.00 0.00 4.04
262 263 2.052104 GCCCACCCCAATTTCCTCG 61.052 63.158 0.00 0.00 0.00 4.63
263 264 2.052104 CGCCCACCCCAATTTCCTC 61.052 63.158 0.00 0.00 0.00 3.71
264 265 2.037208 CGCCCACCCCAATTTCCT 59.963 61.111 0.00 0.00 0.00 3.36
265 266 3.770040 GCGCCCACCCCAATTTCC 61.770 66.667 0.00 0.00 0.00 3.13
266 267 4.128388 CGCGCCCACCCCAATTTC 62.128 66.667 0.00 0.00 0.00 2.17
283 284 2.731348 CCTTCTATCTCGCGCGGC 60.731 66.667 31.69 0.00 0.00 6.53
284 285 1.081774 CTCCTTCTATCTCGCGCGG 60.082 63.158 31.69 20.60 0.00 6.46
285 286 1.727723 GCTCCTTCTATCTCGCGCG 60.728 63.158 26.76 26.76 0.00 6.86
286 287 0.038709 ATGCTCCTTCTATCTCGCGC 60.039 55.000 0.00 0.00 0.00 6.86
287 288 1.668337 CCATGCTCCTTCTATCTCGCG 60.668 57.143 0.00 0.00 0.00 5.87
288 289 1.615883 TCCATGCTCCTTCTATCTCGC 59.384 52.381 0.00 0.00 0.00 5.03
289 290 2.230992 CCTCCATGCTCCTTCTATCTCG 59.769 54.545 0.00 0.00 0.00 4.04
290 291 2.028203 GCCTCCATGCTCCTTCTATCTC 60.028 54.545 0.00 0.00 0.00 2.75
291 292 1.977129 GCCTCCATGCTCCTTCTATCT 59.023 52.381 0.00 0.00 0.00 1.98
292 293 1.337635 CGCCTCCATGCTCCTTCTATC 60.338 57.143 0.00 0.00 0.00 2.08
293 294 0.683973 CGCCTCCATGCTCCTTCTAT 59.316 55.000 0.00 0.00 0.00 1.98
294 295 1.402896 CCGCCTCCATGCTCCTTCTA 61.403 60.000 0.00 0.00 0.00 2.10
295 296 2.739996 CCGCCTCCATGCTCCTTCT 61.740 63.158 0.00 0.00 0.00 2.85
296 297 2.203126 CCGCCTCCATGCTCCTTC 60.203 66.667 0.00 0.00 0.00 3.46
297 298 3.801997 CCCGCCTCCATGCTCCTT 61.802 66.667 0.00 0.00 0.00 3.36
300 301 4.864334 CACCCCGCCTCCATGCTC 62.864 72.222 0.00 0.00 0.00 4.26
310 311 3.770040 GGAAATTGGCCACCCCGC 61.770 66.667 3.88 0.00 35.87 6.13
311 312 3.448340 CGGAAATTGGCCACCCCG 61.448 66.667 3.88 12.56 35.87 5.73
312 313 3.770040 GCGGAAATTGGCCACCCC 61.770 66.667 3.88 3.05 0.00 4.95
313 314 4.128388 CGCGGAAATTGGCCACCC 62.128 66.667 3.88 3.47 0.00 4.61
314 315 2.148558 TTTCGCGGAAATTGGCCACC 62.149 55.000 3.88 1.39 0.00 4.61
315 316 0.319125 TTTTCGCGGAAATTGGCCAC 60.319 50.000 8.90 0.00 31.34 5.01
316 317 0.319125 GTTTTCGCGGAAATTGGCCA 60.319 50.000 16.98 0.00 31.34 5.36
317 318 0.319125 TGTTTTCGCGGAAATTGGCC 60.319 50.000 16.98 3.01 31.34 5.36
318 319 1.059942 CTGTTTTCGCGGAAATTGGC 58.940 50.000 16.98 3.41 31.34 4.52
319 320 2.225491 TCTCTGTTTTCGCGGAAATTGG 59.775 45.455 16.98 9.31 31.34 3.16
320 321 3.226347 GTCTCTGTTTTCGCGGAAATTG 58.774 45.455 16.98 11.82 31.34 2.32
321 322 2.096417 CGTCTCTGTTTTCGCGGAAATT 60.096 45.455 16.98 0.00 31.34 1.82
322 323 1.459592 CGTCTCTGTTTTCGCGGAAAT 59.540 47.619 16.98 0.00 31.34 2.17
323 324 0.856641 CGTCTCTGTTTTCGCGGAAA 59.143 50.000 8.90 8.90 0.00 3.13
324 325 0.942410 CCGTCTCTGTTTTCGCGGAA 60.942 55.000 6.13 0.00 41.45 4.30
325 326 1.372499 CCGTCTCTGTTTTCGCGGA 60.372 57.895 6.13 0.00 41.45 5.54
326 327 3.011760 GCCGTCTCTGTTTTCGCGG 62.012 63.158 6.13 0.00 41.79 6.46
327 328 2.470286 GCCGTCTCTGTTTTCGCG 59.530 61.111 0.00 0.00 0.00 5.87
328 329 2.470286 CGCCGTCTCTGTTTTCGC 59.530 61.111 0.00 0.00 0.00 4.70
329 330 2.380410 CCCGCCGTCTCTGTTTTCG 61.380 63.158 0.00 0.00 0.00 3.46
330 331 2.677979 GCCCGCCGTCTCTGTTTTC 61.678 63.158 0.00 0.00 0.00 2.29
331 332 2.668550 GCCCGCCGTCTCTGTTTT 60.669 61.111 0.00 0.00 0.00 2.43
332 333 3.591254 GAGCCCGCCGTCTCTGTTT 62.591 63.158 0.00 0.00 0.00 2.83
333 334 4.070552 GAGCCCGCCGTCTCTGTT 62.071 66.667 0.00 0.00 0.00 3.16
346 347 4.899239 CTCCCACGATGCCGAGCC 62.899 72.222 0.00 0.00 39.50 4.70
347 348 4.899239 CCTCCCACGATGCCGAGC 62.899 72.222 0.00 0.00 39.50 5.03
348 349 4.227134 CCCTCCCACGATGCCGAG 62.227 72.222 0.00 0.00 39.50 4.63
349 350 4.770362 TCCCTCCCACGATGCCGA 62.770 66.667 0.00 0.00 39.50 5.54
350 351 4.530857 GTCCCTCCCACGATGCCG 62.531 72.222 0.00 0.00 42.50 5.69
351 352 4.530857 CGTCCCTCCCACGATGCC 62.531 72.222 0.00 0.00 39.75 4.40
353 354 4.873129 CGCGTCCCTCCCACGATG 62.873 72.222 0.00 0.00 39.75 3.84
360 361 3.876589 TTCACTTGCGCGTCCCTCC 62.877 63.158 8.43 0.00 0.00 4.30
361 362 1.901650 CTTTCACTTGCGCGTCCCTC 61.902 60.000 8.43 0.00 0.00 4.30
362 363 1.961277 CTTTCACTTGCGCGTCCCT 60.961 57.895 8.43 0.00 0.00 4.20
363 364 2.556287 CTTTCACTTGCGCGTCCC 59.444 61.111 8.43 0.00 0.00 4.46
364 365 2.556287 CCTTTCACTTGCGCGTCC 59.444 61.111 8.43 0.00 0.00 4.79
365 366 1.901650 CTCCCTTTCACTTGCGCGTC 61.902 60.000 8.43 0.00 0.00 5.19
366 367 1.961277 CTCCCTTTCACTTGCGCGT 60.961 57.895 8.43 0.00 0.00 6.01
367 368 1.507141 AACTCCCTTTCACTTGCGCG 61.507 55.000 0.00 0.00 0.00 6.86
368 369 0.668535 AAACTCCCTTTCACTTGCGC 59.331 50.000 0.00 0.00 0.00 6.09
369 370 1.600413 GCAAACTCCCTTTCACTTGCG 60.600 52.381 0.00 0.00 30.95 4.85
370 371 1.269778 GGCAAACTCCCTTTCACTTGC 60.270 52.381 0.00 0.00 38.70 4.01
371 372 2.031120 TGGCAAACTCCCTTTCACTTG 58.969 47.619 0.00 0.00 0.00 3.16
372 373 2.452600 TGGCAAACTCCCTTTCACTT 57.547 45.000 0.00 0.00 0.00 3.16
373 374 2.430694 GTTTGGCAAACTCCCTTTCACT 59.569 45.455 30.54 0.00 38.35 3.41
374 375 2.167487 TGTTTGGCAAACTCCCTTTCAC 59.833 45.455 35.03 13.32 41.90 3.18
375 376 2.430332 CTGTTTGGCAAACTCCCTTTCA 59.570 45.455 35.03 17.19 41.90 2.69
376 377 2.803133 GCTGTTTGGCAAACTCCCTTTC 60.803 50.000 35.03 13.85 41.90 2.62
377 378 1.138859 GCTGTTTGGCAAACTCCCTTT 59.861 47.619 35.03 0.00 41.90 3.11
378 379 0.752658 GCTGTTTGGCAAACTCCCTT 59.247 50.000 35.03 0.00 41.90 3.95
379 380 1.455383 CGCTGTTTGGCAAACTCCCT 61.455 55.000 35.03 0.00 41.90 4.20
380 381 1.007387 CGCTGTTTGGCAAACTCCC 60.007 57.895 35.03 23.76 41.90 4.30
381 382 1.661509 GCGCTGTTTGGCAAACTCC 60.662 57.895 35.03 25.74 41.90 3.85
382 383 0.591170 TAGCGCTGTTTGGCAAACTC 59.409 50.000 35.03 26.41 41.90 3.01
383 384 1.200020 GATAGCGCTGTTTGGCAAACT 59.800 47.619 35.03 21.51 41.90 2.66
384 385 1.617740 GATAGCGCTGTTTGGCAAAC 58.382 50.000 30.99 30.99 41.73 2.93
385 386 0.525761 GGATAGCGCTGTTTGGCAAA 59.474 50.000 22.90 8.93 0.00 3.68
386 387 1.643868 CGGATAGCGCTGTTTGGCAA 61.644 55.000 22.90 0.00 0.00 4.52
387 388 2.106074 CGGATAGCGCTGTTTGGCA 61.106 57.895 22.90 0.00 0.00 4.92
388 389 2.709475 CGGATAGCGCTGTTTGGC 59.291 61.111 22.90 0.29 0.00 4.52
389 390 1.449601 ACCGGATAGCGCTGTTTGG 60.450 57.895 22.90 20.73 0.00 3.28
390 391 1.705337 CCACCGGATAGCGCTGTTTG 61.705 60.000 22.90 9.92 0.00 2.93
391 392 1.449601 CCACCGGATAGCGCTGTTT 60.450 57.895 22.90 4.32 0.00 2.83
392 393 2.186903 CCACCGGATAGCGCTGTT 59.813 61.111 22.90 7.39 0.00 3.16
393 394 4.530857 GCCACCGGATAGCGCTGT 62.531 66.667 22.90 15.10 0.00 4.40
394 395 3.740128 AAGCCACCGGATAGCGCTG 62.740 63.158 22.90 4.91 0.00 5.18
395 396 3.447025 GAAGCCACCGGATAGCGCT 62.447 63.158 17.26 17.26 0.00 5.92
396 397 2.967615 GAAGCCACCGGATAGCGC 60.968 66.667 9.46 0.00 0.00 5.92
397 398 0.532862 ATTGAAGCCACCGGATAGCG 60.533 55.000 9.46 0.00 0.00 4.26
398 399 1.680338 AATTGAAGCCACCGGATAGC 58.320 50.000 9.46 7.87 0.00 2.97
399 400 3.278574 TGAAATTGAAGCCACCGGATAG 58.721 45.455 9.46 0.00 0.00 2.08
400 401 3.278574 CTGAAATTGAAGCCACCGGATA 58.721 45.455 9.46 0.00 0.00 2.59
401 402 2.094675 CTGAAATTGAAGCCACCGGAT 58.905 47.619 9.46 0.00 0.00 4.18
402 403 1.202879 ACTGAAATTGAAGCCACCGGA 60.203 47.619 9.46 0.00 0.00 5.14
403 404 1.247567 ACTGAAATTGAAGCCACCGG 58.752 50.000 0.00 0.00 0.00 5.28
404 405 2.607771 CCAACTGAAATTGAAGCCACCG 60.608 50.000 0.00 0.00 0.00 4.94
405 406 2.867647 GCCAACTGAAATTGAAGCCACC 60.868 50.000 0.00 0.00 0.00 4.61
406 407 2.036346 AGCCAACTGAAATTGAAGCCAC 59.964 45.455 0.00 0.00 0.00 5.01
407 408 2.318908 AGCCAACTGAAATTGAAGCCA 58.681 42.857 0.00 0.00 0.00 4.75
424 425 3.869272 CTGCGCGTGGAATCAGCC 61.869 66.667 8.43 0.00 0.00 4.85
429 430 2.167219 CGTGATCTGCGCGTGGAAT 61.167 57.895 8.43 0.00 45.03 3.01
481 482 1.534338 CCCCAATCCCTAATCCCTGT 58.466 55.000 0.00 0.00 0.00 4.00
504 516 1.216977 CAGGTACGCATTCCACCGA 59.783 57.895 0.00 0.00 37.42 4.69
552 566 1.678300 GAACTCGGGGTCGGAGAGT 60.678 63.158 9.02 0.00 46.01 3.24
749 766 1.528309 CCAACGTGGGCTTGGACTT 60.528 57.895 0.00 0.00 40.76 3.01
887 2769 4.430765 CCAAGCGCGGAGTACGGT 62.431 66.667 8.83 0.00 44.51 4.83
894 2776 4.207281 CCTCGATCCAAGCGCGGA 62.207 66.667 8.83 6.49 35.77 5.54
950 2832 4.704833 TCTGAAGCAGCACGGGGC 62.705 66.667 0.00 0.00 45.30 5.80
966 2851 1.271379 TGCTGGTTAGGGTTTGAGCTC 60.271 52.381 6.82 6.82 0.00 4.09
1013 2898 2.125552 CGTCTGCTGATCCCGCAA 60.126 61.111 7.98 0.00 36.88 4.85
1014 2899 3.068064 TCGTCTGCTGATCCCGCA 61.068 61.111 6.61 6.61 35.80 5.69
1033 2918 0.323629 TTGTCCATGGAGACGTTCCC 59.676 55.000 16.81 0.62 46.19 3.97
1145 3030 9.856162 GGAGGGAGTACAATTTATTTTATACCA 57.144 33.333 0.00 0.00 0.00 3.25
1150 3035 7.049754 GGACGGAGGGAGTACAATTTATTTTA 58.950 38.462 0.00 0.00 0.00 1.52
1153 3038 4.141551 GGGACGGAGGGAGTACAATTTATT 60.142 45.833 0.00 0.00 0.00 1.40
1154 3039 3.390311 GGGACGGAGGGAGTACAATTTAT 59.610 47.826 0.00 0.00 0.00 1.40
1155 3040 2.767960 GGGACGGAGGGAGTACAATTTA 59.232 50.000 0.00 0.00 0.00 1.40
1156 3041 1.558294 GGGACGGAGGGAGTACAATTT 59.442 52.381 0.00 0.00 0.00 1.82
1157 3042 1.201424 GGGACGGAGGGAGTACAATT 58.799 55.000 0.00 0.00 0.00 2.32
1158 3043 0.042131 TGGGACGGAGGGAGTACAAT 59.958 55.000 0.00 0.00 0.00 2.71
1159 3044 0.042131 ATGGGACGGAGGGAGTACAA 59.958 55.000 0.00 0.00 0.00 2.41
1160 3045 0.928505 TATGGGACGGAGGGAGTACA 59.071 55.000 0.00 0.00 0.00 2.90
1161 3046 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
1163 3048 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1164 3049 4.402793 CACTATATTATGGGACGGAGGGAG 59.597 50.000 0.00 0.00 0.00 4.30
1166 3051 4.094476 ACACTATATTATGGGACGGAGGG 58.906 47.826 0.00 0.00 0.00 4.30
1168 3053 5.977489 TGACACTATATTATGGGACGGAG 57.023 43.478 0.00 0.00 0.00 4.63
1169 3054 6.734502 TTTGACACTATATTATGGGACGGA 57.265 37.500 0.00 0.00 0.00 4.69
1170 3055 7.795482 TTTTTGACACTATATTATGGGACGG 57.205 36.000 0.00 0.00 0.00 4.79
1191 3076 8.671028 GTCCCATAATGTATGTAAGACGTTTTT 58.329 33.333 0.00 0.00 34.36 1.94
1192 3077 7.010738 CGTCCCATAATGTATGTAAGACGTTTT 59.989 37.037 16.50 0.00 41.78 2.43
1193 3078 6.477688 CGTCCCATAATGTATGTAAGACGTTT 59.522 38.462 16.50 0.00 41.78 3.60
1194 3079 5.981315 CGTCCCATAATGTATGTAAGACGTT 59.019 40.000 16.50 0.00 41.78 3.99
1195 3080 5.508489 CCGTCCCATAATGTATGTAAGACGT 60.508 44.000 19.82 0.00 43.28 4.34
1196 3081 4.921515 CCGTCCCATAATGTATGTAAGACG 59.078 45.833 17.18 17.18 43.78 4.18
1197 3082 6.092955 TCCGTCCCATAATGTATGTAAGAC 57.907 41.667 0.00 0.00 34.36 3.01
1198 3083 5.245301 CCTCCGTCCCATAATGTATGTAAGA 59.755 44.000 0.00 0.00 34.36 2.10
1199 3084 5.479306 CCTCCGTCCCATAATGTATGTAAG 58.521 45.833 0.00 0.00 34.36 2.34
1200 3085 4.285003 CCCTCCGTCCCATAATGTATGTAA 59.715 45.833 0.00 0.00 34.36 2.41
1201 3086 3.835978 CCCTCCGTCCCATAATGTATGTA 59.164 47.826 0.00 0.00 34.36 2.29
1202 3087 2.637872 CCCTCCGTCCCATAATGTATGT 59.362 50.000 0.00 0.00 34.36 2.29
1203 3088 2.903784 TCCCTCCGTCCCATAATGTATG 59.096 50.000 0.00 0.00 35.94 2.39
1204 3089 3.173965 CTCCCTCCGTCCCATAATGTAT 58.826 50.000 0.00 0.00 0.00 2.29
1205 3090 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1206 3091 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
1207 3092 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1208 3093 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
1209 3094 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
1210 3095 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
1211 3096 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
1212 3097 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
1213 3098 0.106116 ACATCTACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
1214 3099 1.033574 CACATCTACTCCCTCCGTCC 58.966 60.000 0.00 0.00 0.00 4.79
1215 3100 0.386113 GCACATCTACTCCCTCCGTC 59.614 60.000 0.00 0.00 0.00 4.79
1216 3101 0.033011 AGCACATCTACTCCCTCCGT 60.033 55.000 0.00 0.00 0.00 4.69
1217 3102 0.387202 CAGCACATCTACTCCCTCCG 59.613 60.000 0.00 0.00 0.00 4.63
1218 3103 1.490574 ACAGCACATCTACTCCCTCC 58.509 55.000 0.00 0.00 0.00 4.30
1219 3104 2.497675 TGAACAGCACATCTACTCCCTC 59.502 50.000 0.00 0.00 0.00 4.30
1220 3105 2.499289 CTGAACAGCACATCTACTCCCT 59.501 50.000 0.00 0.00 0.00 4.20
1221 3106 2.234908 ACTGAACAGCACATCTACTCCC 59.765 50.000 1.46 0.00 0.00 4.30
1222 3107 3.601443 ACTGAACAGCACATCTACTCC 57.399 47.619 1.46 0.00 0.00 3.85
1223 3108 4.859798 GTGTACTGAACAGCACATCTACTC 59.140 45.833 10.44 0.00 39.29 2.59
1224 3109 4.810790 GTGTACTGAACAGCACATCTACT 58.189 43.478 10.44 0.00 39.29 2.57
1234 3119 7.936584 TGAATTAAAAAGGGTGTACTGAACAG 58.063 34.615 0.00 0.00 39.29 3.16
1243 3128 5.666462 AGCGTTTTGAATTAAAAAGGGTGT 58.334 33.333 19.60 0.00 41.43 4.16
1253 3138 5.234752 TGAGCACTCTAGCGTTTTGAATTA 58.765 37.500 0.00 0.00 40.15 1.40
1258 3143 5.496387 CATAATGAGCACTCTAGCGTTTTG 58.504 41.667 0.00 0.00 40.15 2.44
1263 3148 2.064762 GGCATAATGAGCACTCTAGCG 58.935 52.381 0.00 0.00 40.15 4.26
1265 3150 4.891260 TCATGGCATAATGAGCACTCTAG 58.109 43.478 0.00 0.00 32.75 2.43
1336 3221 6.976934 TTCTGGCAAGTTCTTCCTATTTTT 57.023 33.333 0.00 0.00 0.00 1.94
1363 3248 4.871933 CAGGCATTCTGGTAACCTTTTT 57.128 40.909 0.00 0.00 39.76 1.94
1389 3274 5.353394 TGAACTAAGTTTCAGTGTGACCT 57.647 39.130 0.00 0.00 31.68 3.85
1402 3287 7.015195 AGGGCATAACAAAAACATGAACTAAGT 59.985 33.333 0.00 0.00 0.00 2.24
1456 3341 8.464770 TGCTTGAAAATAAAGATAACATGTGC 57.535 30.769 0.00 0.00 0.00 4.57
1460 3345 9.880157 AGCATTGCTTGAAAATAAAGATAACAT 57.120 25.926 5.03 0.00 33.89 2.71
1542 3427 2.972348 TGACTGAAGGAGGGTAGTTGT 58.028 47.619 0.00 0.00 0.00 3.32
1548 3433 5.129485 CACTATAACATGACTGAAGGAGGGT 59.871 44.000 0.00 0.00 0.00 4.34
1552 3437 4.682787 CGCACTATAACATGACTGAAGGA 58.317 43.478 0.00 0.00 0.00 3.36
1568 3453 6.272822 ACAGATATCAGATAATGCGCACTA 57.727 37.500 14.90 6.65 0.00 2.74
1655 3540 4.809673 CAGGCATTCTGGTAACCTTTTTC 58.190 43.478 0.00 0.00 39.76 2.29
1811 3701 9.704098 GTTGTTTTAATAGATGTTACTAGCTGC 57.296 33.333 0.00 0.00 0.00 5.25
1856 3769 1.208614 CACCGCTTCTTGCAAGAGC 59.791 57.895 27.02 27.15 43.06 4.09
2081 3994 5.124457 ACAAAATGGTGATCTCTATGTGTGC 59.876 40.000 8.83 0.00 0.00 4.57
2183 4096 0.530744 GACCACATCGCTACACTCCA 59.469 55.000 0.00 0.00 0.00 3.86
2241 4154 6.944096 TCCAAAAATTGCCATATCAATGTCA 58.056 32.000 0.00 0.00 36.83 3.58
2244 4157 7.049133 TCCTTCCAAAAATTGCCATATCAATG 58.951 34.615 0.00 0.00 36.83 2.82
2260 4173 3.170717 ACTCGTACTCCATCCTTCCAAA 58.829 45.455 0.00 0.00 0.00 3.28
2264 4177 2.101082 GGGAACTCGTACTCCATCCTTC 59.899 54.545 1.71 0.00 32.95 3.46
2399 4312 4.284490 GGCTCATATACATCTGGACAAGGA 59.716 45.833 0.00 0.00 0.00 3.36
2798 4711 1.865788 ATGATGCACCAACACCACGC 61.866 55.000 0.00 0.00 0.00 5.34
2802 4715 2.756760 AGATGAATGATGCACCAACACC 59.243 45.455 0.00 0.00 0.00 4.16
2996 4910 4.770795 CAAGTACAGAATACAAGAGGGGG 58.229 47.826 0.00 0.00 0.00 5.40
3106 5025 5.936372 CAGTGAACTGATTCAAGAGATCCAA 59.064 40.000 4.36 0.00 46.40 3.53
3184 5134 8.884124 TCATTTTCCTGGTCTCTTGAATATTT 57.116 30.769 0.00 0.00 0.00 1.40
3310 5261 6.657875 ACAAAACTTTCCCCATGATCAAAAA 58.342 32.000 0.00 0.00 0.00 1.94
3311 5262 6.245890 ACAAAACTTTCCCCATGATCAAAA 57.754 33.333 0.00 0.00 0.00 2.44
3541 5494 6.127758 GGCAGAAATGTACCATCAATTACACA 60.128 38.462 0.00 0.00 31.09 3.72
3548 5501 2.746904 CGTGGCAGAAATGTACCATCAA 59.253 45.455 0.00 0.00 34.04 2.57
3777 5730 1.149101 ATCATCCCATACCACCCCAC 58.851 55.000 0.00 0.00 0.00 4.61
3909 5862 2.554032 CGAGCTTGGTTGAAGGACAAAT 59.446 45.455 0.00 0.00 40.36 2.32
3928 5881 1.186200 CATCACCTTCCTCCAGACGA 58.814 55.000 0.00 0.00 0.00 4.20
4084 6606 2.424601 ACGCGCTGTACAAATAGGAGTA 59.575 45.455 5.73 0.00 0.00 2.59
4097 6620 2.028925 TCACATGTCACGCGCTGT 59.971 55.556 5.73 1.79 0.00 4.40
4151 6674 4.581309 TGATTCTGAGAGGCCAAGAAAT 57.419 40.909 5.01 0.00 0.00 2.17
4161 6684 3.248841 GCACATCTGCATGATTCTGAGAG 59.751 47.826 0.00 0.00 43.62 3.20
4234 6757 4.470334 TTCATGATCGGAGTGATGAACA 57.530 40.909 0.00 0.00 37.47 3.18
4361 6885 2.158711 CCTGAGGAATAGCAGATGCCAA 60.159 50.000 0.00 0.00 43.38 4.52
4362 6886 1.419012 CCTGAGGAATAGCAGATGCCA 59.581 52.381 0.00 0.00 43.38 4.92
4363 6887 1.881498 GCCTGAGGAATAGCAGATGCC 60.881 57.143 0.65 0.00 43.38 4.40
4403 6927 3.087781 TCATGCGGGAATTGATTGACAA 58.912 40.909 0.00 0.00 42.95 3.18
4441 6965 0.383949 GAGCGGAACACCAAAAAGCA 59.616 50.000 0.00 0.00 0.00 3.91
4470 6995 4.703897 CACACACCAAAGAGTTCTCCTTA 58.296 43.478 0.00 0.00 0.00 2.69
4540 7065 7.426410 ACAACAGTCGACAATATCACTATAGG 58.574 38.462 19.50 0.00 0.00 2.57
4760 7288 7.328737 GGGCTAGTCAGTATTAATACATTGTCG 59.671 40.741 24.05 11.29 35.74 4.35
4952 7481 9.726438 ACCATAAAATATGTCTTCCTGCTATAC 57.274 33.333 0.00 0.00 0.00 1.47
4992 7521 7.059033 CACTTAACATTTACGACACCAAATTCG 59.941 37.037 0.00 0.00 41.14 3.34
5015 7544 9.778741 TTTGTCTGAGTCTATGAAAAATACACT 57.221 29.630 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.