Multiple sequence alignment - TraesCS2D01G335300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G335300 chr2D 100.000 8345 0 0 1 8345 428566154 428557810 0.000000e+00 15411.0
1 TraesCS2D01G335300 chr2D 94.186 172 10 0 143 314 155439829 155440000 6.420000e-66 263.0
2 TraesCS2D01G335300 chr2D 83.333 114 19 0 482 595 561906084 561906197 1.150000e-18 106.0
3 TraesCS2D01G335300 chr2A 94.664 6766 230 57 649 7340 559108933 559115641 0.000000e+00 10373.0
4 TraesCS2D01G335300 chr2A 94.253 174 8 1 143 314 469790026 469790199 1.790000e-66 265.0
5 TraesCS2D01G335300 chr2A 84.706 85 10 2 400 483 564839425 564839343 1.930000e-11 82.4
6 TraesCS2D01G335300 chr2B 95.288 5178 189 30 412 5560 505503123 505497972 0.000000e+00 8159.0
7 TraesCS2D01G335300 chr2B 95.188 1247 36 15 6147 7375 505497108 505495868 0.000000e+00 1949.0
8 TraesCS2D01G335300 chr2B 95.545 606 10 2 5559 6147 505497811 505497206 0.000000e+00 953.0
9 TraesCS2D01G335300 chr2B 93.981 216 9 3 7369 7581 767308451 767308665 2.910000e-84 324.0
10 TraesCS2D01G335300 chr2B 96.341 164 6 0 151 314 72616589 72616752 3.840000e-68 270.0
11 TraesCS2D01G335300 chr2B 91.667 108 3 2 2812 2913 505500833 505500726 2.430000e-30 145.0
12 TraesCS2D01G335300 chr2B 85.470 117 17 0 479 595 175412402 175412518 1.140000e-23 122.0
13 TraesCS2D01G335300 chr2B 89.706 68 7 0 414 481 734335662 734335729 4.150000e-13 87.9
14 TraesCS2D01G335300 chr5D 92.237 979 66 6 7370 8345 495308218 495307247 0.000000e+00 1378.0
15 TraesCS2D01G335300 chr5D 94.452 775 42 1 7572 8345 560437960 560438734 0.000000e+00 1192.0
16 TraesCS2D01G335300 chr5D 94.315 774 44 0 7572 8345 463265813 463266586 0.000000e+00 1186.0
17 TraesCS2D01G335300 chr5D 94.811 212 7 3 7374 7582 205116842 205117052 2.250000e-85 327.0
18 TraesCS2D01G335300 chr5D 95.732 164 7 0 151 314 42949560 42949723 1.790000e-66 265.0
19 TraesCS2D01G335300 chr5D 94.643 168 8 1 151 317 52112164 52111997 8.310000e-65 259.0
20 TraesCS2D01G335300 chr5D 87.500 80 10 0 519 598 219526740 219526661 8.920000e-15 93.5
21 TraesCS2D01G335300 chr5D 80.342 117 23 0 479 595 361510233 361510349 1.150000e-13 89.8
22 TraesCS2D01G335300 chr5D 85.714 84 12 0 512 595 444300384 444300467 1.150000e-13 89.8
23 TraesCS2D01G335300 chr5D 82.692 104 12 6 497 598 108560534 108560435 4.150000e-13 87.9
24 TraesCS2D01G335300 chr5D 88.889 72 4 4 414 483 27454078 27454147 1.490000e-12 86.1
25 TraesCS2D01G335300 chr5D 88.889 72 4 4 414 483 74461833 74461902 1.490000e-12 86.1
26 TraesCS2D01G335300 chr5D 88.889 72 5 2 414 483 247222820 247222750 1.490000e-12 86.1
27 TraesCS2D01G335300 chr5D 88.732 71 6 2 414 483 349423424 349423493 1.490000e-12 86.1
28 TraesCS2D01G335300 chr6D 94.968 775 38 1 7572 8345 14595412 14596186 0.000000e+00 1214.0
29 TraesCS2D01G335300 chr6D 95.122 164 8 0 151 314 431000180 431000017 8.310000e-65 259.0
30 TraesCS2D01G335300 chr6D 94.083 169 10 0 146 314 324602402 324602570 2.990000e-64 257.0
31 TraesCS2D01G335300 chr6D 94.512 164 9 0 151 314 218407374 218407211 3.870000e-63 254.0
32 TraesCS2D01G335300 chr6D 92.179 179 13 1 151 328 468251170 468250992 1.390000e-62 252.0
33 TraesCS2D01G335300 chr6D 93.452 168 11 0 151 318 458986329 458986162 5.000000e-62 250.0
34 TraesCS2D01G335300 chr6D 93.902 164 10 0 151 314 239362173 239362336 1.800000e-61 248.0
35 TraesCS2D01G335300 chr6D 92.982 171 11 1 151 320 260931948 260931778 1.800000e-61 248.0
36 TraesCS2D01G335300 chr6D 93.902 164 10 0 151 314 305359627 305359790 1.800000e-61 248.0
37 TraesCS2D01G335300 chr6D 93.902 164 10 0 151 314 342810585 342810748 1.800000e-61 248.0
38 TraesCS2D01G335300 chr6D 93.413 167 10 1 151 317 87478374 87478209 6.470000e-61 246.0
39 TraesCS2D01G335300 chr6D 89.175 194 21 0 5606 5799 264005304 264005111 8.370000e-60 243.0
40 TraesCS2D01G335300 chr6D 88.732 71 7 1 414 483 293177315 293177385 1.490000e-12 86.1
41 TraesCS2D01G335300 chr6D 88.732 71 6 2 414 483 307188821 307188890 1.490000e-12 86.1
42 TraesCS2D01G335300 chr6D 87.500 72 6 3 414 483 90890371 90890301 6.940000e-11 80.5
43 TraesCS2D01G335300 chr3D 94.675 770 38 3 7578 8345 4350005 4349237 0.000000e+00 1192.0
44 TraesCS2D01G335300 chr3D 94.194 775 44 1 7572 8345 475128676 475129450 0.000000e+00 1181.0
45 TraesCS2D01G335300 chr3D 94.293 771 40 3 7578 8345 590121158 590120389 0.000000e+00 1177.0
46 TraesCS2D01G335300 chr3D 94.148 769 43 2 7578 8345 454212585 454211818 0.000000e+00 1170.0
47 TraesCS2D01G335300 chr3D 81.091 275 48 4 132 405 333287643 333287914 5.070000e-52 217.0
48 TraesCS2D01G335300 chr3D 91.860 86 7 0 513 598 418387424 418387509 4.090000e-23 121.0
49 TraesCS2D01G335300 chr3D 85.000 100 13 2 497 595 442798936 442799034 5.330000e-17 100.0
50 TraesCS2D01G335300 chr3D 87.500 80 7 2 400 478 196217379 196217302 1.150000e-13 89.8
51 TraesCS2D01G335300 chr3D 88.889 72 4 4 414 483 42474259 42474190 1.490000e-12 86.1
52 TraesCS2D01G335300 chr6A 94.538 769 41 1 7578 8345 558104112 558103344 0.000000e+00 1186.0
53 TraesCS2D01G335300 chr6A 81.151 886 131 28 4289 5150 371235144 371236017 0.000000e+00 678.0
54 TraesCS2D01G335300 chr6A 95.122 164 8 0 151 314 458217874 458217711 8.310000e-65 259.0
55 TraesCS2D01G335300 chr6A 89.691 194 20 0 5606 5799 371236916 371237109 1.800000e-61 248.0
56 TraesCS2D01G335300 chr6A 82.353 85 15 0 477 561 49462256 49462172 3.230000e-09 75.0
57 TraesCS2D01G335300 chr6B 80.449 890 133 29 4289 5150 405088594 405087718 7.060000e-180 641.0
58 TraesCS2D01G335300 chr6B 95.732 164 7 0 151 314 661344976 661344813 1.790000e-66 265.0
59 TraesCS2D01G335300 chr6B 89.175 194 21 0 5606 5799 405086719 405086526 8.370000e-60 243.0
60 TraesCS2D01G335300 chr6B 81.356 118 22 0 481 598 689172820 689172703 6.890000e-16 97.1
61 TraesCS2D01G335300 chr7D 94.836 213 9 2 7371 7581 565188930 565189142 1.740000e-86 331.0
62 TraesCS2D01G335300 chr7D 93.182 220 11 3 7366 7581 555002384 555002603 3.760000e-83 320.0
63 TraesCS2D01G335300 chr7D 96.951 164 5 0 151 314 312574128 312574291 8.250000e-70 276.0
64 TraesCS2D01G335300 chr7D 96.951 164 5 0 151 314 363148833 363148996 8.250000e-70 276.0
65 TraesCS2D01G335300 chr7D 95.732 164 7 0 151 314 23497758 23497595 1.790000e-66 265.0
66 TraesCS2D01G335300 chr7D 93.023 86 5 1 513 598 94745353 94745437 3.160000e-24 124.0
67 TraesCS2D01G335300 chr5A 95.261 211 4 5 7374 7581 567753954 567753747 6.240000e-86 329.0
68 TraesCS2D01G335300 chr5A 89.950 199 20 0 151 349 436260734 436260536 2.990000e-64 257.0
69 TraesCS2D01G335300 chr5A 83.761 117 19 0 482 598 645625429 645625313 2.460000e-20 111.0
70 TraesCS2D01G335300 chr1D 93.981 216 11 2 7368 7581 354529336 354529551 8.080000e-85 326.0
71 TraesCS2D01G335300 chr1D 94.643 168 8 1 148 314 9218204 9218371 8.310000e-65 259.0
72 TraesCS2D01G335300 chr1D 93.567 171 10 1 145 314 8796604 8796434 3.870000e-63 254.0
73 TraesCS2D01G335300 chr1D 93.567 171 10 1 148 317 128530470 128530640 3.870000e-63 254.0
74 TraesCS2D01G335300 chr1D 89.610 77 7 1 482 557 447257870 447257946 6.890000e-16 97.1
75 TraesCS2D01G335300 chr1D 88.732 71 8 0 519 589 2500273 2500343 4.150000e-13 87.9
76 TraesCS2D01G335300 chr1D 90.385 52 5 0 352 403 28013497 28013446 1.500000e-07 69.4
77 TraesCS2D01G335300 chr1B 94.419 215 6 5 7372 7581 563557090 563556877 8.080000e-85 326.0
78 TraesCS2D01G335300 chr1B 95.210 167 8 0 148 314 322414737 322414903 1.790000e-66 265.0
79 TraesCS2D01G335300 chr1B 86.087 115 14 2 482 595 480419979 480420092 1.140000e-23 122.0
80 TraesCS2D01G335300 chr1B 85.217 115 17 0 481 595 499898204 499898318 1.470000e-22 119.0
81 TraesCS2D01G335300 chr1B 84.615 117 18 0 479 595 72765805 72765921 5.290000e-22 117.0
82 TraesCS2D01G335300 chr1B 83.761 117 19 0 479 595 72798693 72798809 2.460000e-20 111.0
83 TraesCS2D01G335300 chr1B 80.153 131 25 1 468 598 606249518 606249389 6.890000e-16 97.1
84 TraesCS2D01G335300 chr4A 94.009 217 8 5 7368 7581 736607374 736607588 2.910000e-84 324.0
85 TraesCS2D01G335300 chr4A 94.118 170 10 0 148 317 149031407 149031238 8.310000e-65 259.0
86 TraesCS2D01G335300 chr7A 96.364 165 5 1 151 314 156116004 156115840 3.840000e-68 270.0
87 TraesCS2D01G335300 chr7A 95.238 168 8 0 147 314 709731234 709731067 4.970000e-67 267.0
88 TraesCS2D01G335300 chr7A 84.034 119 18 1 480 598 617696629 617696512 6.850000e-21 113.0
89 TraesCS2D01G335300 chr7A 84.524 84 11 1 400 483 36322158 36322239 1.930000e-11 82.4
90 TraesCS2D01G335300 chr5B 94.737 171 9 0 151 321 8378132 8378302 4.970000e-67 267.0
91 TraesCS2D01G335300 chr5B 77.665 197 29 11 414 598 139340621 139340428 1.150000e-18 106.0
92 TraesCS2D01G335300 chr5B 82.456 114 20 0 482 595 72092845 72092958 5.330000e-17 100.0
93 TraesCS2D01G335300 chr5B 81.148 122 20 3 482 602 584900552 584900671 2.480000e-15 95.3
94 TraesCS2D01G335300 chr5B 82.979 94 13 2 414 505 87982058 87982150 1.930000e-11 82.4
95 TraesCS2D01G335300 chr4D 95.122 164 8 0 151 314 93336848 93336685 8.310000e-65 259.0
96 TraesCS2D01G335300 chr4D 94.152 171 9 1 148 317 243613269 243613439 8.310000e-65 259.0
97 TraesCS2D01G335300 chr4D 94.083 169 9 1 151 318 457481051 457481219 1.070000e-63 255.0
98 TraesCS2D01G335300 chr4D 87.324 71 7 2 414 483 223565481 223565412 6.940000e-11 80.5
99 TraesCS2D01G335300 chr1A 94.643 168 8 1 151 317 493207984 493208151 8.310000e-65 259.0
100 TraesCS2D01G335300 chr1A 93.452 168 11 0 147 314 404181956 404182123 5.000000e-62 250.0
101 TraesCS2D01G335300 chr1A 89.333 75 8 0 521 595 238677750 238677824 2.480000e-15 95.3
102 TraesCS2D01G335300 chr1A 90.278 72 5 2 512 583 19550461 19550530 8.920000e-15 93.5
103 TraesCS2D01G335300 chr1A 80.328 122 21 3 479 598 467158779 467158659 1.150000e-13 89.8
104 TraesCS2D01G335300 chr1A 85.897 78 11 0 518 595 208208077 208208000 5.370000e-12 84.2
105 TraesCS2D01G335300 chr1A 88.235 68 8 0 416 483 534875860 534875927 1.930000e-11 82.4
106 TraesCS2D01G335300 chr1A 88.235 68 8 0 416 483 534894746 534894813 1.930000e-11 82.4
107 TraesCS2D01G335300 chr1A 88.235 68 8 0 416 483 534913833 534913900 1.930000e-11 82.4
108 TraesCS2D01G335300 chr7B 93.143 175 12 0 140 314 517104794 517104968 2.990000e-64 257.0
109 TraesCS2D01G335300 chrUn 93.293 164 11 0 151 314 92777893 92777730 8.370000e-60 243.0
110 TraesCS2D01G335300 chrUn 93.252 163 11 0 150 312 108250276 108250438 3.010000e-59 241.0
111 TraesCS2D01G335300 chrUn 92.683 164 12 0 151 314 70231880 70231717 3.890000e-58 237.0
112 TraesCS2D01G335300 chrUn 92.683 164 12 0 151 314 244963986 244963823 3.890000e-58 237.0
113 TraesCS2D01G335300 chrUn 92.727 165 11 1 150 314 325796281 325796118 3.890000e-58 237.0
114 TraesCS2D01G335300 chrUn 91.716 169 14 0 146 314 28615954 28616122 1.400000e-57 235.0
115 TraesCS2D01G335300 chrUn 92.683 164 11 1 151 314 92316654 92316492 1.400000e-57 235.0
116 TraesCS2D01G335300 chrUn 92.121 165 13 0 150 314 112721300 112721136 5.040000e-57 233.0
117 TraesCS2D01G335300 chrUn 92.121 165 12 1 150 314 12184905 12184742 1.810000e-56 231.0
118 TraesCS2D01G335300 chrUn 91.667 168 13 1 151 317 382102281 382102448 1.810000e-56 231.0
119 TraesCS2D01G335300 chrUn 85.000 80 12 0 519 598 432783635 432783556 1.930000e-11 82.4
120 TraesCS2D01G335300 chrUn 87.143 70 6 2 414 481 144670295 144670227 8.980000e-10 76.8
121 TraesCS2D01G335300 chrUn 87.143 70 6 2 414 481 162176091 162176023 8.980000e-10 76.8
122 TraesCS2D01G335300 chrUn 87.143 70 6 2 414 481 222153351 222153419 8.980000e-10 76.8
123 TraesCS2D01G335300 chrUn 83.951 81 12 1 519 598 431839842 431839762 8.980000e-10 76.8
124 TraesCS2D01G335300 chrUn 86.111 72 7 3 414 483 2572640 2572570 3.230000e-09 75.0
125 TraesCS2D01G335300 chrUn 86.111 72 7 3 414 483 132053463 132053393 3.230000e-09 75.0
126 TraesCS2D01G335300 chrUn 84.722 72 8 2 414 483 112545144 112545214 1.500000e-07 69.4
127 TraesCS2D01G335300 chrUn 95.238 42 1 1 414 455 124711007 124711047 1.940000e-06 65.8
128 TraesCS2D01G335300 chrUn 83.099 71 10 2 414 483 320943436 320943367 6.990000e-06 63.9
129 TraesCS2D01G335300 chr4B 96.429 56 2 0 512 567 549138260 549138315 8.920000e-15 93.5
130 TraesCS2D01G335300 chr4B 80.833 120 21 2 480 598 618088547 618088429 8.920000e-15 93.5
131 TraesCS2D01G335300 chr4B 86.420 81 11 0 512 592 661254920 661255000 1.150000e-13 89.8
132 TraesCS2D01G335300 chr4B 88.889 72 5 2 414 483 431792243 431792173 1.490000e-12 86.1
133 TraesCS2D01G335300 chr4B 86.842 76 10 0 482 557 553528401 553528476 1.490000e-12 86.1
134 TraesCS2D01G335300 chr4B 88.571 70 5 2 416 483 533743087 533743019 1.930000e-11 82.4
135 TraesCS2D01G335300 chr3B 84.706 85 10 3 400 483 391874674 391874592 1.930000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G335300 chr2D 428557810 428566154 8344 True 15411.0 15411 100.000 1 8345 1 chr2D.!!$R1 8344
1 TraesCS2D01G335300 chr2A 559108933 559115641 6708 False 10373.0 10373 94.664 649 7340 1 chr2A.!!$F2 6691
2 TraesCS2D01G335300 chr2B 505495868 505503123 7255 True 2801.5 8159 94.422 412 7375 4 chr2B.!!$R1 6963
3 TraesCS2D01G335300 chr5D 495307247 495308218 971 True 1378.0 1378 92.237 7370 8345 1 chr5D.!!$R5 975
4 TraesCS2D01G335300 chr5D 560437960 560438734 774 False 1192.0 1192 94.452 7572 8345 1 chr5D.!!$F9 773
5 TraesCS2D01G335300 chr5D 463265813 463266586 773 False 1186.0 1186 94.315 7572 8345 1 chr5D.!!$F8 773
6 TraesCS2D01G335300 chr6D 14595412 14596186 774 False 1214.0 1214 94.968 7572 8345 1 chr6D.!!$F1 773
7 TraesCS2D01G335300 chr3D 4349237 4350005 768 True 1192.0 1192 94.675 7578 8345 1 chr3D.!!$R1 767
8 TraesCS2D01G335300 chr3D 475128676 475129450 774 False 1181.0 1181 94.194 7572 8345 1 chr3D.!!$F4 773
9 TraesCS2D01G335300 chr3D 590120389 590121158 769 True 1177.0 1177 94.293 7578 8345 1 chr3D.!!$R5 767
10 TraesCS2D01G335300 chr3D 454211818 454212585 767 True 1170.0 1170 94.148 7578 8345 1 chr3D.!!$R4 767
11 TraesCS2D01G335300 chr6A 558103344 558104112 768 True 1186.0 1186 94.538 7578 8345 1 chr6A.!!$R3 767
12 TraesCS2D01G335300 chr6A 371235144 371237109 1965 False 463.0 678 85.421 4289 5799 2 chr6A.!!$F1 1510
13 TraesCS2D01G335300 chr6B 405086526 405088594 2068 True 442.0 641 84.812 4289 5799 2 chr6B.!!$R3 1510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 321 0.108281 GAACGGAGGGAGTGTAAGGC 60.108 60.000 0.00 0.0 0.00 4.35 F
1462 1501 0.173481 CTGATTTGCGAGGGACGAGA 59.827 55.000 0.00 0.0 45.77 4.04 F
2452 2513 0.109179 CACGGTTGGCAATGGACATG 60.109 55.000 1.92 0.0 0.00 3.21 F
2507 2568 0.529992 GCTCCCATGTAGGTACACGC 60.530 60.000 0.00 0.0 39.30 5.34 F
2594 2656 2.551270 TGAGACCCATTCTAGCTGGTT 58.449 47.619 0.00 0.0 33.22 3.67 F
2774 2843 3.006323 GGCTGAACAGATATCTCCACGAT 59.994 47.826 1.03 0.0 36.11 3.73 F
4377 4458 3.071023 TGAAGAAAAGAGGTGTGGACGAT 59.929 43.478 0.00 0.0 0.00 3.73 F
4624 4720 2.604046 ATGGTTATGCTCGTCCTGTC 57.396 50.000 0.00 0.0 0.00 3.51 F
6425 7345 1.660019 TTGTTTGGGAGCCTTGGGGA 61.660 55.000 0.00 0.0 33.58 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1494 1533 0.108585 ATTTCCCATGACCCGATCGG 59.891 55.000 27.65 27.65 37.81 4.18 R
2507 2568 0.373716 GTTGGACGGCGCAGATAAAG 59.626 55.000 16.26 0.00 0.00 1.85 R
3947 4026 1.857217 CTAGTAGCTGCATGCACTTCG 59.143 52.381 18.46 8.43 45.94 3.79 R
4001 4080 3.437049 GCTGTACATCTGGAACAACTTCC 59.563 47.826 0.00 0.00 45.89 3.46 R
4184 4264 3.723235 CTGGCAGATGCGTAGGCGT 62.723 63.158 9.42 0.85 44.10 5.68 R
4624 4720 2.436417 ACAACAACATGGATCCCTTCG 58.564 47.619 9.90 0.00 0.00 3.79 R
6370 7290 1.446907 CTGAGAGGTGTGAACATGGC 58.553 55.000 0.00 0.00 0.00 4.40 R
6565 7486 3.804036 TCTTCGAAGAAACTTTGCCTCA 58.196 40.909 25.19 0.00 45.90 3.86 R
7861 8798 1.066502 TGCTACGCTTTGTCATGCCTA 60.067 47.619 0.00 0.00 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.175133 CCATGTGGGTGGACTTAGC 57.825 57.895 0.00 0.00 42.02 3.09
30 31 0.327924 CCATGTGGGTGGACTTAGCA 59.672 55.000 0.00 0.00 42.02 3.49
31 32 1.679944 CCATGTGGGTGGACTTAGCAG 60.680 57.143 0.00 0.00 42.02 4.24
32 33 1.278985 CATGTGGGTGGACTTAGCAGA 59.721 52.381 0.00 0.00 0.00 4.26
33 34 1.429930 TGTGGGTGGACTTAGCAGAA 58.570 50.000 0.00 0.00 0.00 3.02
34 35 1.771854 TGTGGGTGGACTTAGCAGAAA 59.228 47.619 0.00 0.00 0.00 2.52
35 36 2.173782 TGTGGGTGGACTTAGCAGAAAA 59.826 45.455 0.00 0.00 0.00 2.29
36 37 2.552743 GTGGGTGGACTTAGCAGAAAAC 59.447 50.000 0.00 0.00 0.00 2.43
37 38 2.173782 TGGGTGGACTTAGCAGAAAACA 59.826 45.455 0.00 0.00 0.00 2.83
38 39 3.219281 GGGTGGACTTAGCAGAAAACAA 58.781 45.455 0.00 0.00 0.00 2.83
39 40 3.253432 GGGTGGACTTAGCAGAAAACAAG 59.747 47.826 0.00 0.00 0.00 3.16
40 41 3.883489 GGTGGACTTAGCAGAAAACAAGT 59.117 43.478 0.00 0.00 34.03 3.16
41 42 4.023963 GGTGGACTTAGCAGAAAACAAGTC 60.024 45.833 5.04 5.04 43.91 3.01
42 43 4.816925 GTGGACTTAGCAGAAAACAAGTCT 59.183 41.667 11.75 0.00 44.04 3.24
43 44 5.050023 GTGGACTTAGCAGAAAACAAGTCTC 60.050 44.000 11.75 4.77 44.04 3.36
44 45 4.452795 GGACTTAGCAGAAAACAAGTCTCC 59.547 45.833 11.75 0.00 44.04 3.71
45 46 5.297569 ACTTAGCAGAAAACAAGTCTCCT 57.702 39.130 0.00 0.00 0.00 3.69
46 47 6.420913 ACTTAGCAGAAAACAAGTCTCCTA 57.579 37.500 0.00 0.00 0.00 2.94
47 48 6.459923 ACTTAGCAGAAAACAAGTCTCCTAG 58.540 40.000 0.00 0.00 0.00 3.02
48 49 4.278975 AGCAGAAAACAAGTCTCCTAGG 57.721 45.455 0.82 0.82 0.00 3.02
49 50 3.648545 AGCAGAAAACAAGTCTCCTAGGT 59.351 43.478 9.08 0.00 0.00 3.08
50 51 3.748568 GCAGAAAACAAGTCTCCTAGGTG 59.251 47.826 9.08 6.58 0.00 4.00
51 52 3.748568 CAGAAAACAAGTCTCCTAGGTGC 59.251 47.826 9.08 3.05 0.00 5.01
52 53 2.457366 AAACAAGTCTCCTAGGTGCG 57.543 50.000 9.08 0.00 0.00 5.34
53 54 1.339097 AACAAGTCTCCTAGGTGCGT 58.661 50.000 9.08 0.00 0.00 5.24
54 55 1.339097 ACAAGTCTCCTAGGTGCGTT 58.661 50.000 9.08 0.31 0.00 4.84
55 56 2.522185 ACAAGTCTCCTAGGTGCGTTA 58.478 47.619 9.08 0.00 0.00 3.18
56 57 2.230750 ACAAGTCTCCTAGGTGCGTTAC 59.769 50.000 9.08 0.43 0.00 2.50
67 68 3.741805 GGTGCGTTACCTGATTTTCTC 57.258 47.619 4.04 0.00 46.51 2.87
68 69 3.071479 GGTGCGTTACCTGATTTTCTCA 58.929 45.455 4.04 0.00 46.51 3.27
69 70 3.500680 GGTGCGTTACCTGATTTTCTCAA 59.499 43.478 4.04 0.00 46.51 3.02
70 71 4.023536 GGTGCGTTACCTGATTTTCTCAAA 60.024 41.667 4.04 0.00 46.51 2.69
71 72 5.506649 GGTGCGTTACCTGATTTTCTCAAAA 60.507 40.000 4.04 0.00 46.51 2.44
72 73 6.149633 GTGCGTTACCTGATTTTCTCAAAAT 58.850 36.000 0.00 0.00 43.43 1.82
73 74 7.302524 GTGCGTTACCTGATTTTCTCAAAATA 58.697 34.615 0.00 0.00 40.97 1.40
74 75 7.968405 GTGCGTTACCTGATTTTCTCAAAATAT 59.032 33.333 0.00 0.00 40.97 1.28
75 76 9.168451 TGCGTTACCTGATTTTCTCAAAATATA 57.832 29.630 0.00 0.00 40.97 0.86
76 77 9.997482 GCGTTACCTGATTTTCTCAAAATATAA 57.003 29.630 0.00 0.00 40.97 0.98
98 99 6.529463 AAAACAAAATAGCAATGCACTCAC 57.471 33.333 8.35 0.00 0.00 3.51
99 100 5.458041 AACAAAATAGCAATGCACTCACT 57.542 34.783 8.35 0.00 0.00 3.41
100 101 4.801891 ACAAAATAGCAATGCACTCACTG 58.198 39.130 8.35 0.00 0.00 3.66
101 102 3.498927 AAATAGCAATGCACTCACTGC 57.501 42.857 8.35 0.00 45.01 4.40
156 157 7.368198 ACTCTCTCCATTTCTAATTACTCCC 57.632 40.000 0.00 0.00 0.00 4.30
157 158 7.136203 ACTCTCTCCATTTCTAATTACTCCCT 58.864 38.462 0.00 0.00 0.00 4.20
158 159 7.289084 ACTCTCTCCATTTCTAATTACTCCCTC 59.711 40.741 0.00 0.00 0.00 4.30
159 160 6.555360 TCTCTCCATTTCTAATTACTCCCTCC 59.445 42.308 0.00 0.00 0.00 4.30
160 161 5.304614 TCTCCATTTCTAATTACTCCCTCCG 59.695 44.000 0.00 0.00 0.00 4.63
161 162 4.966805 TCCATTTCTAATTACTCCCTCCGT 59.033 41.667 0.00 0.00 0.00 4.69
162 163 5.427481 TCCATTTCTAATTACTCCCTCCGTT 59.573 40.000 0.00 0.00 0.00 4.44
163 164 5.758784 CCATTTCTAATTACTCCCTCCGTTC 59.241 44.000 0.00 0.00 0.00 3.95
164 165 5.349061 TTTCTAATTACTCCCTCCGTTCC 57.651 43.478 0.00 0.00 0.00 3.62
165 166 4.261411 TCTAATTACTCCCTCCGTTCCT 57.739 45.455 0.00 0.00 0.00 3.36
166 167 5.393068 TCTAATTACTCCCTCCGTTCCTA 57.607 43.478 0.00 0.00 0.00 2.94
167 168 5.769835 TCTAATTACTCCCTCCGTTCCTAA 58.230 41.667 0.00 0.00 0.00 2.69
168 169 6.197168 TCTAATTACTCCCTCCGTTCCTAAA 58.803 40.000 0.00 0.00 0.00 1.85
169 170 5.970501 AATTACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
170 171 4.748277 TTACTCCCTCCGTTCCTAAATG 57.252 45.455 0.00 0.00 0.00 2.32
171 172 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
172 173 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
173 174 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
174 175 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
175 176 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
176 177 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
177 178 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
178 179 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
179 180 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
180 181 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
181 182 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
182 183 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
183 184 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
184 185 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
210 211 9.820725 ACATTTCAAATGGATTACAACATATGG 57.179 29.630 14.70 0.00 0.00 2.74
215 216 9.859152 TCAAATGGATTACAACATATGGATGTA 57.141 29.630 15.63 15.63 45.93 2.29
218 219 9.812347 AATGGATTACAACATATGGATGTATGT 57.188 29.630 18.61 13.01 45.93 2.29
220 221 9.942850 TGGATTACAACATATGGATGTATGTAG 57.057 33.333 18.61 0.00 45.93 2.74
254 255 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
255 256 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
256 257 6.690194 ATGTAGATTCACTCATTTTGCTCC 57.310 37.500 0.00 0.00 0.00 4.70
257 258 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
258 259 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
259 260 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
260 261 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
261 262 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
262 263 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
263 264 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
264 265 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
265 266 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
266 267 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
267 268 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
268 269 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
269 270 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
270 271 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
271 272 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
272 273 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
273 274 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
274 275 4.460034 TGCTCCGTATGTAGTCACTTGTTA 59.540 41.667 0.00 0.00 0.00 2.41
275 276 5.035443 GCTCCGTATGTAGTCACTTGTTAG 58.965 45.833 0.00 0.00 0.00 2.34
276 277 5.163683 GCTCCGTATGTAGTCACTTGTTAGA 60.164 44.000 0.00 0.00 0.00 2.10
277 278 6.624423 GCTCCGTATGTAGTCACTTGTTAGAA 60.624 42.308 0.00 0.00 0.00 2.10
278 279 7.400599 TCCGTATGTAGTCACTTGTTAGAAT 57.599 36.000 0.00 0.00 0.00 2.40
279 280 7.478322 TCCGTATGTAGTCACTTGTTAGAATC 58.522 38.462 0.00 0.00 0.00 2.52
280 281 7.338703 TCCGTATGTAGTCACTTGTTAGAATCT 59.661 37.037 0.00 0.00 0.00 2.40
281 282 7.644551 CCGTATGTAGTCACTTGTTAGAATCTC 59.355 40.741 0.00 0.00 0.00 2.75
282 283 8.399425 CGTATGTAGTCACTTGTTAGAATCTCT 58.601 37.037 0.00 0.00 0.00 3.10
306 307 9.116067 TCTAAAATGACTTATATTTGGGAACGG 57.884 33.333 0.00 0.00 0.00 4.44
307 308 7.948034 AAAATGACTTATATTTGGGAACGGA 57.052 32.000 0.00 0.00 0.00 4.69
308 309 7.568199 AAATGACTTATATTTGGGAACGGAG 57.432 36.000 0.00 0.00 0.00 4.63
309 310 5.031066 TGACTTATATTTGGGAACGGAGG 57.969 43.478 0.00 0.00 0.00 4.30
310 311 4.141574 TGACTTATATTTGGGAACGGAGGG 60.142 45.833 0.00 0.00 0.00 4.30
311 312 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
312 313 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
313 314 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
314 315 0.328258 ATTTGGGAACGGAGGGAGTG 59.672 55.000 0.00 0.00 0.00 3.51
315 316 1.057851 TTTGGGAACGGAGGGAGTGT 61.058 55.000 0.00 0.00 0.00 3.55
316 317 0.178926 TTGGGAACGGAGGGAGTGTA 60.179 55.000 0.00 0.00 0.00 2.90
317 318 0.178926 TGGGAACGGAGGGAGTGTAA 60.179 55.000 0.00 0.00 0.00 2.41
318 319 0.535797 GGGAACGGAGGGAGTGTAAG 59.464 60.000 0.00 0.00 0.00 2.34
319 320 0.535797 GGAACGGAGGGAGTGTAAGG 59.464 60.000 0.00 0.00 0.00 2.69
320 321 0.108281 GAACGGAGGGAGTGTAAGGC 60.108 60.000 0.00 0.00 0.00 4.35
321 322 0.834687 AACGGAGGGAGTGTAAGGCA 60.835 55.000 0.00 0.00 0.00 4.75
322 323 0.617820 ACGGAGGGAGTGTAAGGCAT 60.618 55.000 0.00 0.00 0.00 4.40
323 324 0.541863 CGGAGGGAGTGTAAGGCATT 59.458 55.000 0.00 0.00 0.00 3.56
324 325 1.065418 CGGAGGGAGTGTAAGGCATTT 60.065 52.381 0.00 0.00 0.00 2.32
325 326 2.618045 CGGAGGGAGTGTAAGGCATTTT 60.618 50.000 0.00 0.00 0.00 1.82
326 327 3.370103 CGGAGGGAGTGTAAGGCATTTTA 60.370 47.826 0.00 0.00 0.00 1.52
327 328 4.595986 GGAGGGAGTGTAAGGCATTTTAA 58.404 43.478 0.00 0.00 0.00 1.52
328 329 5.014202 GGAGGGAGTGTAAGGCATTTTAAA 58.986 41.667 0.00 0.00 0.00 1.52
329 330 5.125578 GGAGGGAGTGTAAGGCATTTTAAAG 59.874 44.000 0.00 0.00 0.00 1.85
330 331 5.887754 AGGGAGTGTAAGGCATTTTAAAGA 58.112 37.500 0.00 0.00 0.00 2.52
331 332 6.494059 AGGGAGTGTAAGGCATTTTAAAGAT 58.506 36.000 0.00 0.00 0.00 2.40
332 333 7.639378 AGGGAGTGTAAGGCATTTTAAAGATA 58.361 34.615 0.00 0.00 0.00 1.98
333 334 8.113462 AGGGAGTGTAAGGCATTTTAAAGATAA 58.887 33.333 0.00 0.00 0.00 1.75
334 335 8.188799 GGGAGTGTAAGGCATTTTAAAGATAAC 58.811 37.037 0.00 0.00 0.00 1.89
335 336 8.736244 GGAGTGTAAGGCATTTTAAAGATAACA 58.264 33.333 0.00 0.00 0.00 2.41
352 353 8.519799 AAGATAACAATACAAACTACATGGGG 57.480 34.615 0.00 0.00 0.00 4.96
353 354 7.867921 AGATAACAATACAAACTACATGGGGA 58.132 34.615 0.00 0.00 0.00 4.81
354 355 8.502738 AGATAACAATACAAACTACATGGGGAT 58.497 33.333 0.00 0.00 0.00 3.85
355 356 9.787435 GATAACAATACAAACTACATGGGGATA 57.213 33.333 0.00 0.00 0.00 2.59
365 366 9.967346 CAAACTACATGGGGATATATATAGACG 57.033 37.037 0.00 0.00 0.00 4.18
366 367 7.762588 ACTACATGGGGATATATATAGACGC 57.237 40.000 0.00 3.24 0.00 5.19
367 368 7.295340 ACTACATGGGGATATATATAGACGCA 58.705 38.462 14.44 14.44 0.00 5.24
368 369 7.950684 ACTACATGGGGATATATATAGACGCAT 59.049 37.037 16.63 16.63 32.72 4.73
369 370 7.618019 ACATGGGGATATATATAGACGCATT 57.382 36.000 18.42 11.69 30.54 3.56
370 371 8.034313 ACATGGGGATATATATAGACGCATTT 57.966 34.615 18.42 13.36 30.54 2.32
371 372 8.494433 ACATGGGGATATATATAGACGCATTTT 58.506 33.333 18.42 10.85 30.54 1.82
372 373 9.996554 CATGGGGATATATATAGACGCATTTTA 57.003 33.333 18.42 2.01 30.54 1.52
374 375 9.429109 TGGGGATATATATAGACGCATTTTAGA 57.571 33.333 10.34 0.00 0.00 2.10
375 376 9.915629 GGGGATATATATAGACGCATTTTAGAG 57.084 37.037 14.14 0.00 0.00 2.43
385 386 7.541122 AGACGCATTTTAGAGTTTAGATTCC 57.459 36.000 0.00 0.00 0.00 3.01
386 387 6.539103 AGACGCATTTTAGAGTTTAGATTCCC 59.461 38.462 0.00 0.00 0.00 3.97
387 388 6.415573 ACGCATTTTAGAGTTTAGATTCCCT 58.584 36.000 0.00 0.00 0.00 4.20
388 389 6.539103 ACGCATTTTAGAGTTTAGATTCCCTC 59.461 38.462 0.00 0.00 0.00 4.30
389 390 6.538742 CGCATTTTAGAGTTTAGATTCCCTCA 59.461 38.462 0.00 0.00 0.00 3.86
390 391 7.227512 CGCATTTTAGAGTTTAGATTCCCTCAT 59.772 37.037 0.00 0.00 0.00 2.90
391 392 8.907885 GCATTTTAGAGTTTAGATTCCCTCATT 58.092 33.333 0.00 0.00 0.00 2.57
397 398 8.794335 AGAGTTTAGATTCCCTCATTTTACAC 57.206 34.615 0.00 0.00 0.00 2.90
398 399 7.829706 AGAGTTTAGATTCCCTCATTTTACACC 59.170 37.037 0.00 0.00 0.00 4.16
399 400 6.598064 AGTTTAGATTCCCTCATTTTACACCG 59.402 38.462 0.00 0.00 0.00 4.94
400 401 4.569719 AGATTCCCTCATTTTACACCGT 57.430 40.909 0.00 0.00 0.00 4.83
401 402 5.687166 AGATTCCCTCATTTTACACCGTA 57.313 39.130 0.00 0.00 0.00 4.02
402 403 6.248569 AGATTCCCTCATTTTACACCGTAT 57.751 37.500 0.00 0.00 0.00 3.06
403 404 6.055588 AGATTCCCTCATTTTACACCGTATG 58.944 40.000 0.00 0.00 0.00 2.39
404 405 4.829872 TCCCTCATTTTACACCGTATGT 57.170 40.909 0.00 0.00 46.06 2.29
405 406 5.168647 TCCCTCATTTTACACCGTATGTT 57.831 39.130 0.00 0.00 43.19 2.71
406 407 4.938832 TCCCTCATTTTACACCGTATGTTG 59.061 41.667 0.00 0.00 43.19 3.33
407 408 4.938832 CCCTCATTTTACACCGTATGTTGA 59.061 41.667 0.00 0.00 43.19 3.18
408 409 5.163794 CCCTCATTTTACACCGTATGTTGAC 60.164 44.000 0.00 0.00 43.19 3.18
409 410 5.642063 CCTCATTTTACACCGTATGTTGACT 59.358 40.000 0.00 0.00 43.19 3.41
410 411 6.148811 CCTCATTTTACACCGTATGTTGACTT 59.851 38.462 0.00 0.00 43.19 3.01
458 459 2.514013 GCTCCGTATGTTGTCCGCG 61.514 63.158 0.00 0.00 0.00 6.46
462 463 1.418367 CGTATGTTGTCCGCGTTGG 59.582 57.895 4.92 0.00 40.09 3.77
470 471 4.910956 TCCGCGTTGGAATCTCTG 57.089 55.556 4.92 0.00 46.38 3.35
484 485 8.884726 GTTGGAATCTCTGAAAAGACTTATACC 58.115 37.037 0.00 0.00 0.00 2.73
486 487 6.993308 GGAATCTCTGAAAAGACTTATACCCC 59.007 42.308 0.00 0.00 0.00 4.95
487 488 5.952347 TCTCTGAAAAGACTTATACCCCC 57.048 43.478 0.00 0.00 0.00 5.40
489 490 5.661759 TCTCTGAAAAGACTTATACCCCCTC 59.338 44.000 0.00 0.00 0.00 4.30
493 494 5.494706 TGAAAAGACTTATACCCCCTCCATT 59.505 40.000 0.00 0.00 0.00 3.16
495 496 4.295905 AGACTTATACCCCCTCCATTCA 57.704 45.455 0.00 0.00 0.00 2.57
602 603 4.476628 TTAGGACGGAGGGAATAAACAC 57.523 45.455 0.00 0.00 0.00 3.32
603 604 1.206371 AGGACGGAGGGAATAAACACG 59.794 52.381 0.00 0.00 0.00 4.49
605 606 0.251073 ACGGAGGGAATAAACACGGG 59.749 55.000 0.00 0.00 0.00 5.28
640 641 6.429692 TCGTGGAGTGATAAACATTTCAACAT 59.570 34.615 0.00 0.00 0.00 2.71
641 642 7.040755 TCGTGGAGTGATAAACATTTCAACATT 60.041 33.333 0.00 0.00 0.00 2.71
642 643 7.594758 CGTGGAGTGATAAACATTTCAACATTT 59.405 33.333 0.00 0.00 0.00 2.32
643 644 8.915654 GTGGAGTGATAAACATTTCAACATTTC 58.084 33.333 0.00 0.00 0.00 2.17
644 645 8.087750 TGGAGTGATAAACATTTCAACATTTCC 58.912 33.333 0.00 0.00 0.00 3.13
645 646 7.545615 GGAGTGATAAACATTTCAACATTTCCC 59.454 37.037 0.00 0.00 0.00 3.97
711 714 0.958822 TGCATCTAGCCGAGCGAATA 59.041 50.000 0.00 0.00 44.83 1.75
829 832 0.798771 CGCCTCGCTCTACAGAACAC 60.799 60.000 0.00 0.00 0.00 3.32
841 844 3.351416 GAACACCCGACGCCCAAC 61.351 66.667 0.00 0.00 0.00 3.77
855 858 2.356667 CAACCCCAAGCCCTCTCC 59.643 66.667 0.00 0.00 0.00 3.71
873 876 2.600731 CCGCTCCTCTCCTCTCCT 59.399 66.667 0.00 0.00 0.00 3.69
875 878 1.531748 CGCTCCTCTCCTCTCCTCT 59.468 63.158 0.00 0.00 0.00 3.69
1364 1393 6.674419 CCAAGGCCTCCTCTAAAGGTATATAT 59.326 42.308 5.23 0.00 43.82 0.86
1368 1397 5.367060 GCCTCCTCTAAAGGTATATATGGGG 59.633 48.000 0.00 0.00 43.82 4.96
1376 1406 2.931088 AGGTATATATGGGGACTCGGGA 59.069 50.000 0.00 0.00 0.00 5.14
1379 1409 5.197189 AGGTATATATGGGGACTCGGGAATA 59.803 44.000 0.00 0.00 0.00 1.75
1462 1501 0.173481 CTGATTTGCGAGGGACGAGA 59.827 55.000 0.00 0.00 45.77 4.04
1597 1636 3.347411 CGATTTCTCGTGGGGTCTC 57.653 57.895 0.00 0.00 40.07 3.36
1598 1637 0.525668 CGATTTCTCGTGGGGTCTCG 60.526 60.000 0.00 0.00 40.07 4.04
1740 1785 2.437281 ACCAGATTCGAGATGCAGGAAT 59.563 45.455 0.00 0.00 33.34 3.01
1810 1855 1.696884 TGCAATCGGGGTATGCAGATA 59.303 47.619 0.00 0.00 44.52 1.98
1853 1898 1.068127 GGGCATTGTTCATCAGCATCC 59.932 52.381 0.00 0.00 0.00 3.51
1854 1899 1.268896 GGCATTGTTCATCAGCATCCG 60.269 52.381 0.00 0.00 0.00 4.18
1855 1900 1.672363 GCATTGTTCATCAGCATCCGA 59.328 47.619 0.00 0.00 0.00 4.55
1856 1901 2.292569 GCATTGTTCATCAGCATCCGAT 59.707 45.455 0.00 0.00 0.00 4.18
1859 1904 5.686834 CATTGTTCATCAGCATCCGATTAG 58.313 41.667 0.00 0.00 0.00 1.73
1860 1905 4.670896 TGTTCATCAGCATCCGATTAGA 57.329 40.909 0.00 0.00 0.00 2.10
1861 1906 5.219343 TGTTCATCAGCATCCGATTAGAT 57.781 39.130 0.00 0.00 0.00 1.98
1872 1928 7.439356 CAGCATCCGATTAGATCTTTTAGTGAA 59.561 37.037 0.00 0.00 0.00 3.18
2012 2068 6.090628 TGCTGTCACAAACATTTCAAGTTTTC 59.909 34.615 0.00 0.00 37.10 2.29
2118 2175 6.716628 AGCAGTGATCATTTTGTTTTCCTCTA 59.283 34.615 0.00 0.00 0.00 2.43
2167 2224 0.540597 AGGGAAAGCTGGGAAAGTGC 60.541 55.000 0.00 0.00 0.00 4.40
2179 2236 3.007940 TGGGAAAGTGCGAGGGATATATG 59.992 47.826 0.00 0.00 0.00 1.78
2180 2237 3.008049 GGGAAAGTGCGAGGGATATATGT 59.992 47.826 0.00 0.00 0.00 2.29
2263 2320 4.189539 GTGATGGGGCCAACACAA 57.810 55.556 17.55 0.00 45.21 3.33
2264 2321 2.669878 GTGATGGGGCCAACACAAT 58.330 52.632 17.55 0.00 45.21 2.71
2265 2322 0.975887 GTGATGGGGCCAACACAATT 59.024 50.000 17.55 0.00 45.21 2.32
2266 2323 1.347378 GTGATGGGGCCAACACAATTT 59.653 47.619 17.55 0.00 45.21 1.82
2331 2392 2.730934 AGCATGGACAAGCTGATCAT 57.269 45.000 0.77 0.00 40.13 2.45
2383 2444 4.631813 GGGCGGTGAACATATTATCTCATC 59.368 45.833 0.00 0.00 0.00 2.92
2402 2463 2.229792 TCGTAGTAGTGTTTGTCGGGT 58.770 47.619 0.00 0.00 0.00 5.28
2425 2486 6.880942 TGCTGCTAATCATGCACAATAATA 57.119 33.333 0.00 0.00 36.37 0.98
2434 2495 5.495640 TCATGCACAATAATATATCGGGCA 58.504 37.500 0.00 4.43 0.00 5.36
2452 2513 0.109179 CACGGTTGGCAATGGACATG 60.109 55.000 1.92 0.00 0.00 3.21
2501 2562 1.132500 GGCTAAGCTCCCATGTAGGT 58.868 55.000 0.00 0.00 34.66 3.08
2505 2566 3.492829 GCTAAGCTCCCATGTAGGTACAC 60.493 52.174 0.00 0.00 39.30 2.90
2507 2568 0.529992 GCTCCCATGTAGGTACACGC 60.530 60.000 0.00 0.00 39.30 5.34
2594 2656 2.551270 TGAGACCCATTCTAGCTGGTT 58.449 47.619 0.00 0.00 33.22 3.67
2724 2786 4.228210 TCTTGCCCATCTCTTCCATTTAGT 59.772 41.667 0.00 0.00 0.00 2.24
2768 2835 6.932356 TCATTTTGGCTGAACAGATATCTC 57.068 37.500 1.03 0.00 0.00 2.75
2774 2843 3.006323 GGCTGAACAGATATCTCCACGAT 59.994 47.826 1.03 0.00 36.11 3.73
2775 2844 4.502259 GGCTGAACAGATATCTCCACGATT 60.502 45.833 1.03 0.00 33.48 3.34
2776 2845 5.053145 GCTGAACAGATATCTCCACGATTT 58.947 41.667 1.03 0.00 33.48 2.17
2777 2846 5.525378 GCTGAACAGATATCTCCACGATTTT 59.475 40.000 1.03 0.00 33.48 1.82
2778 2847 6.037610 GCTGAACAGATATCTCCACGATTTTT 59.962 38.462 1.03 0.00 33.48 1.94
2948 3017 3.802685 GTCTACGTTTCAGCTGTCAAACT 59.197 43.478 21.82 14.30 31.43 2.66
2956 3025 7.009174 ACGTTTCAGCTGTCAAACTTTAATTTG 59.991 33.333 21.82 10.89 40.32 2.32
3065 3135 6.202188 AGTCTACACAATCGTTGTTGGTAAAG 59.798 38.462 1.37 0.00 43.23 1.85
3075 3145 4.523813 GTTGTTGGTAAAGACGATGTGTG 58.476 43.478 0.00 0.00 0.00 3.82
3418 3489 5.551233 TGGAAGTTATTTGAGTGAGTCCAG 58.449 41.667 0.00 0.00 0.00 3.86
3669 3748 7.038659 ACAAGAATCTTTCTGATACTTCTCCG 58.961 38.462 0.00 0.00 40.59 4.63
3670 3749 6.155475 AGAATCTTTCTGATACTTCTCCGG 57.845 41.667 0.00 0.00 38.91 5.14
3671 3750 5.659079 AGAATCTTTCTGATACTTCTCCGGT 59.341 40.000 0.00 0.00 38.91 5.28
3672 3751 5.941555 ATCTTTCTGATACTTCTCCGGTT 57.058 39.130 0.00 0.00 32.79 4.44
3673 3752 5.326200 TCTTTCTGATACTTCTCCGGTTC 57.674 43.478 0.00 0.00 0.00 3.62
3674 3753 5.017490 TCTTTCTGATACTTCTCCGGTTCT 58.983 41.667 0.00 0.00 0.00 3.01
3675 3754 4.985538 TTCTGATACTTCTCCGGTTCTC 57.014 45.455 0.00 0.00 0.00 2.87
3676 3755 3.288964 TCTGATACTTCTCCGGTTCTCC 58.711 50.000 0.00 0.00 0.00 3.71
3695 3774 4.885325 TCTCCCTGTACAACCTTGAAAAAC 59.115 41.667 0.00 0.00 0.00 2.43
4001 4080 3.576118 ACAGAGGGAAGGTGATATCATCG 59.424 47.826 9.02 0.00 30.81 3.84
4377 4458 3.071023 TGAAGAAAAGAGGTGTGGACGAT 59.929 43.478 0.00 0.00 0.00 3.73
4475 4570 8.844244 GGTTATCTTTCAGCTTACATCATCATT 58.156 33.333 0.00 0.00 0.00 2.57
4624 4720 2.604046 ATGGTTATGCTCGTCCTGTC 57.396 50.000 0.00 0.00 0.00 3.51
5847 6649 7.288810 TCAAAATGCCATGAGAAACTAGTTT 57.711 32.000 20.67 20.67 35.14 2.66
6239 7156 8.803397 AATCATCCATGATAACAGACCATATG 57.197 34.615 2.41 0.00 46.22 1.78
6365 7285 4.860907 GCCAAGAAGCATGTCAAATGTTAG 59.139 41.667 0.00 0.00 0.00 2.34
6370 7290 2.094258 AGCATGTCAAATGTTAGCGACG 59.906 45.455 0.00 0.00 0.00 5.12
6394 7314 3.213206 TGTTCACACCTCTCAGCAAAT 57.787 42.857 0.00 0.00 0.00 2.32
6425 7345 1.660019 TTGTTTGGGAGCCTTGGGGA 61.660 55.000 0.00 0.00 33.58 4.81
6565 7486 0.319405 GTTTGCCATTTGCTCTGCCT 59.681 50.000 0.00 0.00 42.00 4.75
6596 7517 0.898789 TCTTCGAAGAGCCGGGTTCT 60.899 55.000 23.74 7.68 38.43 3.01
6682 7603 3.338249 CAACCAGAATCCACGTCTTCAT 58.662 45.455 0.00 0.00 0.00 2.57
6934 7855 1.066787 GGTACCACAGTCTGAGCCTTC 60.067 57.143 7.15 0.00 0.00 3.46
6954 7875 4.222124 TCCAAAATCCTCCTTCTGTAGC 57.778 45.455 0.00 0.00 0.00 3.58
6955 7876 3.846588 TCCAAAATCCTCCTTCTGTAGCT 59.153 43.478 0.00 0.00 0.00 3.32
6957 7878 4.637977 CCAAAATCCTCCTTCTGTAGCTTC 59.362 45.833 0.00 0.00 0.00 3.86
6962 7892 3.131223 TCCTCCTTCTGTAGCTTCGATTG 59.869 47.826 0.00 0.00 0.00 2.67
6979 7909 3.525537 GATTGCAGAGAGGAAATCGTCA 58.474 45.455 5.97 0.00 33.52 4.35
6980 7910 2.662006 TGCAGAGAGGAAATCGTCAG 57.338 50.000 5.97 0.00 33.52 3.51
7025 7956 4.095782 TCAGCTGAAAGTACGCTTGTTTTT 59.904 37.500 15.67 0.00 34.71 1.94
7069 8000 2.358003 AACTGCTCGCCTGCTGTC 60.358 61.111 8.18 0.00 42.73 3.51
7340 8275 5.925969 GCCTGCATAAATAAAAGTGTGTTGT 59.074 36.000 0.00 0.00 0.00 3.32
7341 8276 6.423604 GCCTGCATAAATAAAAGTGTGTTGTT 59.576 34.615 0.00 0.00 0.00 2.83
7351 8286 5.438761 AAAGTGTGTTGTTATGCCTTCTC 57.561 39.130 0.00 0.00 0.00 2.87
7414 8349 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
7426 8361 0.319813 CATCTGGGCGATGCATACGA 60.320 55.000 18.54 2.30 42.75 3.43
7427 8362 0.610174 ATCTGGGCGATGCATACGAT 59.390 50.000 18.54 4.91 0.00 3.73
7488 8423 3.064931 ACAACAGTAAGACTAAAGCCGC 58.935 45.455 0.00 0.00 0.00 6.53
7504 8439 0.802494 CCGCCGTCTAAGCAACAAAT 59.198 50.000 0.00 0.00 0.00 2.32
7506 8441 2.241722 CGCCGTCTAAGCAACAAATTG 58.758 47.619 0.00 0.00 38.99 2.32
7526 8461 3.623703 TGTCGCTACACCTATCCAGTTA 58.376 45.455 0.00 0.00 0.00 2.24
7530 8465 3.741344 CGCTACACCTATCCAGTTAATGC 59.259 47.826 0.00 0.00 0.00 3.56
7532 8467 5.123227 GCTACACCTATCCAGTTAATGCAA 58.877 41.667 0.00 0.00 0.00 4.08
7569 8505 3.268334 TGGGCCTATACCAAACAGACATT 59.732 43.478 4.53 0.00 34.44 2.71
7573 8509 4.201950 GCCTATACCAAACAGACATTGCAG 60.202 45.833 0.00 0.00 0.00 4.41
7576 8512 0.675083 CCAAACAGACATTGCAGCCA 59.325 50.000 0.00 0.00 0.00 4.75
7589 8525 4.269523 AGCCAAGCCACTTGCCGA 62.270 61.111 1.73 0.00 42.71 5.54
7597 8533 2.583441 CCACTTGCCGAGTCTGGGA 61.583 63.158 4.84 0.00 36.10 4.37
7599 8535 2.125912 CTTGCCGAGTCTGGGACG 60.126 66.667 4.84 0.00 37.67 4.79
7609 8545 1.532078 TCTGGGACGCACACTGGTA 60.532 57.895 0.00 0.00 0.00 3.25
7610 8546 0.902984 TCTGGGACGCACACTGGTAT 60.903 55.000 0.00 0.00 0.00 2.73
7674 8610 5.481824 TCCATCTTCAGAACTGTACTGATGT 59.518 40.000 6.77 0.00 42.68 3.06
7706 8642 1.202452 TCGGTCTAGCTATCGTCGACA 60.202 52.381 17.16 3.13 0.00 4.35
7747 8683 1.377725 CTCCTCCCTGCGTGCAAAT 60.378 57.895 0.00 0.00 0.00 2.32
7838 8775 3.013219 GCTTGAAGTCCTTGGAAGATCC 58.987 50.000 0.00 0.00 36.96 3.36
7918 8855 2.367241 TGACTTGACATCTCCACCGAAA 59.633 45.455 0.00 0.00 0.00 3.46
8168 9107 0.179004 TTCACCGGCAACCATGTCTT 60.179 50.000 0.00 0.00 0.00 3.01
8252 9191 3.134442 GCCATCTCTGGAAGAAGATGACT 59.866 47.826 12.66 0.00 46.34 3.41
8268 9208 2.126071 CTACACGTCCACCAGCGG 60.126 66.667 0.00 0.00 0.00 5.52
8319 9260 1.485019 CCCCCATGATGCCTAGAGGTA 60.485 57.143 0.00 0.00 37.57 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.200092 CCCACATGGTGCCCCAAATT 61.200 55.000 0.00 0.00 46.04 1.82
1 2 1.613035 CCCACATGGTGCCCCAAAT 60.613 57.895 0.00 0.00 46.04 2.32
2 3 2.203758 CCCACATGGTGCCCCAAA 60.204 61.111 0.00 0.00 46.04 3.28
11 12 0.327924 TGCTAAGTCCACCCACATGG 59.672 55.000 0.00 0.00 41.57 3.66
12 13 1.278985 TCTGCTAAGTCCACCCACATG 59.721 52.381 0.00 0.00 0.00 3.21
13 14 1.656587 TCTGCTAAGTCCACCCACAT 58.343 50.000 0.00 0.00 0.00 3.21
14 15 1.429930 TTCTGCTAAGTCCACCCACA 58.570 50.000 0.00 0.00 0.00 4.17
15 16 2.552743 GTTTTCTGCTAAGTCCACCCAC 59.447 50.000 0.00 0.00 0.00 4.61
16 17 2.173782 TGTTTTCTGCTAAGTCCACCCA 59.826 45.455 0.00 0.00 0.00 4.51
17 18 2.858745 TGTTTTCTGCTAAGTCCACCC 58.141 47.619 0.00 0.00 0.00 4.61
18 19 3.883489 ACTTGTTTTCTGCTAAGTCCACC 59.117 43.478 0.00 0.00 0.00 4.61
19 20 4.816925 AGACTTGTTTTCTGCTAAGTCCAC 59.183 41.667 11.15 0.00 46.25 4.02
20 21 5.036117 AGACTTGTTTTCTGCTAAGTCCA 57.964 39.130 11.15 0.00 46.25 4.02
21 22 4.452795 GGAGACTTGTTTTCTGCTAAGTCC 59.547 45.833 11.15 4.81 46.25 3.85
22 23 5.301555 AGGAGACTTGTTTTCTGCTAAGTC 58.698 41.667 0.00 0.00 45.73 3.01
23 24 5.297569 AGGAGACTTGTTTTCTGCTAAGT 57.702 39.130 0.00 0.00 39.77 2.24
24 25 5.872070 CCTAGGAGACTTGTTTTCTGCTAAG 59.128 44.000 1.05 0.00 41.75 2.18
25 26 5.307196 ACCTAGGAGACTTGTTTTCTGCTAA 59.693 40.000 17.98 0.00 41.75 3.09
26 27 4.838986 ACCTAGGAGACTTGTTTTCTGCTA 59.161 41.667 17.98 1.35 41.55 3.49
27 28 3.648545 ACCTAGGAGACTTGTTTTCTGCT 59.351 43.478 17.98 0.00 43.52 4.24
28 29 3.748568 CACCTAGGAGACTTGTTTTCTGC 59.251 47.826 17.98 0.00 43.67 4.26
29 30 3.748568 GCACCTAGGAGACTTGTTTTCTG 59.251 47.826 17.98 0.00 43.67 3.02
30 31 3.555168 CGCACCTAGGAGACTTGTTTTCT 60.555 47.826 17.98 0.00 43.67 2.52
31 32 2.737252 CGCACCTAGGAGACTTGTTTTC 59.263 50.000 17.98 0.00 43.67 2.29
32 33 2.104281 ACGCACCTAGGAGACTTGTTTT 59.896 45.455 17.98 0.00 43.67 2.43
33 34 1.692519 ACGCACCTAGGAGACTTGTTT 59.307 47.619 17.98 0.00 43.67 2.83
34 35 1.339097 ACGCACCTAGGAGACTTGTT 58.661 50.000 17.98 0.00 43.67 2.83
35 36 1.339097 AACGCACCTAGGAGACTTGT 58.661 50.000 17.98 1.91 43.67 3.16
36 37 2.416972 GGTAACGCACCTAGGAGACTTG 60.417 54.545 17.98 3.55 44.79 3.16
37 38 1.823610 GGTAACGCACCTAGGAGACTT 59.176 52.381 17.98 4.96 44.79 3.01
38 39 1.472188 GGTAACGCACCTAGGAGACT 58.528 55.000 17.98 0.00 44.79 3.24
46 47 8.871033 ATTTTGAGAAAATCAGGTAACGCACCT 61.871 37.037 3.49 3.49 44.82 4.00
47 48 6.790123 ATTTTGAGAAAATCAGGTAACGCACC 60.790 38.462 0.00 0.00 41.26 5.01
48 49 4.742438 TTGAGAAAATCAGGTAACGCAC 57.258 40.909 0.00 0.00 46.39 5.34
49 50 5.759506 TTTTGAGAAAATCAGGTAACGCA 57.240 34.783 0.00 0.00 46.39 5.24
50 51 9.997482 TTATATTTTGAGAAAATCAGGTAACGC 57.003 29.630 0.00 0.00 41.16 4.84
72 73 9.352784 GTGAGTGCATTGCTATTTTGTTTTATA 57.647 29.630 10.49 0.00 0.00 0.98
73 74 8.090214 AGTGAGTGCATTGCTATTTTGTTTTAT 58.910 29.630 10.49 0.00 0.00 1.40
74 75 7.381948 CAGTGAGTGCATTGCTATTTTGTTTTA 59.618 33.333 10.49 0.00 0.00 1.52
75 76 6.201425 CAGTGAGTGCATTGCTATTTTGTTTT 59.799 34.615 10.49 0.00 0.00 2.43
76 77 5.693104 CAGTGAGTGCATTGCTATTTTGTTT 59.307 36.000 10.49 0.00 0.00 2.83
77 78 5.224888 CAGTGAGTGCATTGCTATTTTGTT 58.775 37.500 10.49 0.00 0.00 2.83
78 79 4.801891 CAGTGAGTGCATTGCTATTTTGT 58.198 39.130 10.49 0.00 0.00 2.83
130 131 9.095700 GGGAGTAATTAGAAATGGAGAGAGTAT 57.904 37.037 0.00 0.00 0.00 2.12
131 132 8.290277 AGGGAGTAATTAGAAATGGAGAGAGTA 58.710 37.037 0.00 0.00 0.00 2.59
132 133 7.136203 AGGGAGTAATTAGAAATGGAGAGAGT 58.864 38.462 0.00 0.00 0.00 3.24
133 134 7.256154 GGAGGGAGTAATTAGAAATGGAGAGAG 60.256 44.444 0.00 0.00 0.00 3.20
134 135 6.555360 GGAGGGAGTAATTAGAAATGGAGAGA 59.445 42.308 0.00 0.00 0.00 3.10
135 136 6.517529 CGGAGGGAGTAATTAGAAATGGAGAG 60.518 46.154 0.00 0.00 0.00 3.20
136 137 5.304614 CGGAGGGAGTAATTAGAAATGGAGA 59.695 44.000 0.00 0.00 0.00 3.71
137 138 5.070580 ACGGAGGGAGTAATTAGAAATGGAG 59.929 44.000 0.00 0.00 0.00 3.86
138 139 4.966805 ACGGAGGGAGTAATTAGAAATGGA 59.033 41.667 0.00 0.00 0.00 3.41
139 140 5.291905 ACGGAGGGAGTAATTAGAAATGG 57.708 43.478 0.00 0.00 0.00 3.16
140 141 5.758784 GGAACGGAGGGAGTAATTAGAAATG 59.241 44.000 0.00 0.00 0.00 2.32
141 142 5.666265 AGGAACGGAGGGAGTAATTAGAAAT 59.334 40.000 0.00 0.00 0.00 2.17
142 143 5.028131 AGGAACGGAGGGAGTAATTAGAAA 58.972 41.667 0.00 0.00 0.00 2.52
143 144 4.617593 AGGAACGGAGGGAGTAATTAGAA 58.382 43.478 0.00 0.00 0.00 2.10
144 145 4.261411 AGGAACGGAGGGAGTAATTAGA 57.739 45.455 0.00 0.00 0.00 2.10
145 146 6.475596 TTTAGGAACGGAGGGAGTAATTAG 57.524 41.667 0.00 0.00 0.00 1.73
146 147 6.384886 ACATTTAGGAACGGAGGGAGTAATTA 59.615 38.462 0.00 0.00 0.00 1.40
147 148 5.191124 ACATTTAGGAACGGAGGGAGTAATT 59.809 40.000 0.00 0.00 0.00 1.40
148 149 4.720273 ACATTTAGGAACGGAGGGAGTAAT 59.280 41.667 0.00 0.00 0.00 1.89
149 150 4.098894 ACATTTAGGAACGGAGGGAGTAA 58.901 43.478 0.00 0.00 0.00 2.24
150 151 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
151 152 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
152 153 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
153 154 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
154 155 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
155 156 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
156 157 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
157 158 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
158 159 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
184 185 9.820725 CCATATGTTGTAATCCATTTGAAATGT 57.179 29.630 15.93 1.43 0.00 2.71
188 189 9.199645 ACATCCATATGTTGTAATCCATTTGAA 57.800 29.630 1.24 0.00 44.07 2.69
189 190 8.765488 ACATCCATATGTTGTAATCCATTTGA 57.235 30.769 1.24 0.00 44.07 2.69
192 193 9.812347 ACATACATCCATATGTTGTAATCCATT 57.188 29.630 15.65 1.46 44.07 3.16
194 195 9.942850 CTACATACATCCATATGTTGTAATCCA 57.057 33.333 15.65 0.90 44.07 3.41
228 229 9.453572 AGCAAAATGAGTGAATCTACATTCTAA 57.546 29.630 0.00 0.00 39.49 2.10
229 230 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
230 231 7.066766 GGAGCAAAATGAGTGAATCTACATTCT 59.933 37.037 0.00 0.00 39.49 2.40
231 232 7.192232 GGAGCAAAATGAGTGAATCTACATTC 58.808 38.462 0.00 0.00 39.24 2.67
232 233 6.183360 CGGAGCAAAATGAGTGAATCTACATT 60.183 38.462 0.00 0.00 34.99 2.71
233 234 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
234 235 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
235 236 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
236 237 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
237 238 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
238 239 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
239 240 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
240 241 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
241 242 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
242 243 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
243 244 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
244 245 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
245 246 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
246 247 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
247 248 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
248 249 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
249 250 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
250 251 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
251 252 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
252 253 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
253 254 6.432607 TCTAACAAGTGACTACATACGGAG 57.567 41.667 0.00 0.00 0.00 4.63
254 255 6.822667 TTCTAACAAGTGACTACATACGGA 57.177 37.500 0.00 0.00 0.00 4.69
255 256 7.481642 AGATTCTAACAAGTGACTACATACGG 58.518 38.462 0.00 0.00 0.00 4.02
256 257 8.399425 AGAGATTCTAACAAGTGACTACATACG 58.601 37.037 0.00 0.00 0.00 3.06
280 281 9.116067 CCGTTCCCAAATATAAGTCATTTTAGA 57.884 33.333 0.00 0.00 0.00 2.10
281 282 9.116067 TCCGTTCCCAAATATAAGTCATTTTAG 57.884 33.333 0.00 0.00 0.00 1.85
282 283 9.116067 CTCCGTTCCCAAATATAAGTCATTTTA 57.884 33.333 0.00 0.00 0.00 1.52
283 284 7.068226 CCTCCGTTCCCAAATATAAGTCATTTT 59.932 37.037 0.00 0.00 0.00 1.82
284 285 6.546034 CCTCCGTTCCCAAATATAAGTCATTT 59.454 38.462 0.00 0.00 0.00 2.32
285 286 6.062095 CCTCCGTTCCCAAATATAAGTCATT 58.938 40.000 0.00 0.00 0.00 2.57
286 287 5.456186 CCCTCCGTTCCCAAATATAAGTCAT 60.456 44.000 0.00 0.00 0.00 3.06
287 288 4.141574 CCCTCCGTTCCCAAATATAAGTCA 60.142 45.833 0.00 0.00 0.00 3.41
288 289 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
289 290 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
290 291 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
291 292 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
292 293 3.389983 CACTCCCTCCGTTCCCAAATATA 59.610 47.826 0.00 0.00 0.00 0.86
293 294 2.172717 CACTCCCTCCGTTCCCAAATAT 59.827 50.000 0.00 0.00 0.00 1.28
294 295 1.557832 CACTCCCTCCGTTCCCAAATA 59.442 52.381 0.00 0.00 0.00 1.40
295 296 0.328258 CACTCCCTCCGTTCCCAAAT 59.672 55.000 0.00 0.00 0.00 2.32
296 297 1.057851 ACACTCCCTCCGTTCCCAAA 61.058 55.000 0.00 0.00 0.00 3.28
297 298 0.178926 TACACTCCCTCCGTTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
298 299 0.178926 TTACACTCCCTCCGTTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
299 300 0.535797 CTTACACTCCCTCCGTTCCC 59.464 60.000 0.00 0.00 0.00 3.97
300 301 0.535797 CCTTACACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
301 302 0.108281 GCCTTACACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
302 303 0.834687 TGCCTTACACTCCCTCCGTT 60.835 55.000 0.00 0.00 0.00 4.44
303 304 0.617820 ATGCCTTACACTCCCTCCGT 60.618 55.000 0.00 0.00 0.00 4.69
304 305 0.541863 AATGCCTTACACTCCCTCCG 59.458 55.000 0.00 0.00 0.00 4.63
305 306 2.808906 AAATGCCTTACACTCCCTCC 57.191 50.000 0.00 0.00 0.00 4.30
306 307 5.944007 TCTTTAAAATGCCTTACACTCCCTC 59.056 40.000 0.00 0.00 0.00 4.30
307 308 5.887754 TCTTTAAAATGCCTTACACTCCCT 58.112 37.500 0.00 0.00 0.00 4.20
308 309 6.775594 ATCTTTAAAATGCCTTACACTCCC 57.224 37.500 0.00 0.00 0.00 4.30
309 310 8.736244 TGTTATCTTTAAAATGCCTTACACTCC 58.264 33.333 0.00 0.00 0.00 3.85
326 327 8.966868 CCCCATGTAGTTTGTATTGTTATCTTT 58.033 33.333 0.00 0.00 0.00 2.52
327 328 8.333235 TCCCCATGTAGTTTGTATTGTTATCTT 58.667 33.333 0.00 0.00 0.00 2.40
328 329 7.867921 TCCCCATGTAGTTTGTATTGTTATCT 58.132 34.615 0.00 0.00 0.00 1.98
329 330 8.691661 ATCCCCATGTAGTTTGTATTGTTATC 57.308 34.615 0.00 0.00 0.00 1.75
339 340 9.967346 CGTCTATATATATCCCCATGTAGTTTG 57.033 37.037 0.00 0.00 0.00 2.93
340 341 8.639761 GCGTCTATATATATCCCCATGTAGTTT 58.360 37.037 0.00 0.00 0.00 2.66
341 342 7.783119 TGCGTCTATATATATCCCCATGTAGTT 59.217 37.037 0.00 0.00 0.00 2.24
342 343 7.295340 TGCGTCTATATATATCCCCATGTAGT 58.705 38.462 0.00 0.00 0.00 2.73
343 344 7.761038 TGCGTCTATATATATCCCCATGTAG 57.239 40.000 0.00 0.00 0.00 2.74
344 345 8.721133 AATGCGTCTATATATATCCCCATGTA 57.279 34.615 0.00 0.00 0.00 2.29
345 346 7.618019 AATGCGTCTATATATATCCCCATGT 57.382 36.000 0.00 0.00 0.00 3.21
346 347 8.908786 AAAATGCGTCTATATATATCCCCATG 57.091 34.615 0.00 0.00 0.00 3.66
348 349 9.429109 TCTAAAATGCGTCTATATATATCCCCA 57.571 33.333 0.00 0.00 0.00 4.96
349 350 9.915629 CTCTAAAATGCGTCTATATATATCCCC 57.084 37.037 0.00 0.00 0.00 4.81
359 360 9.262358 GGAATCTAAACTCTAAAATGCGTCTAT 57.738 33.333 0.00 0.00 0.00 1.98
360 361 7.709613 GGGAATCTAAACTCTAAAATGCGTCTA 59.290 37.037 0.00 0.00 0.00 2.59
361 362 6.539103 GGGAATCTAAACTCTAAAATGCGTCT 59.461 38.462 0.00 0.00 0.00 4.18
362 363 6.539103 AGGGAATCTAAACTCTAAAATGCGTC 59.461 38.462 0.00 0.00 0.00 5.19
363 364 6.415573 AGGGAATCTAAACTCTAAAATGCGT 58.584 36.000 0.00 0.00 0.00 5.24
364 365 6.538742 TGAGGGAATCTAAACTCTAAAATGCG 59.461 38.462 0.00 0.00 0.00 4.73
365 366 7.865706 TGAGGGAATCTAAACTCTAAAATGC 57.134 36.000 0.00 0.00 0.00 3.56
371 372 9.886132 GTGTAAAATGAGGGAATCTAAACTCTA 57.114 33.333 0.00 0.00 0.00 2.43
372 373 7.829706 GGTGTAAAATGAGGGAATCTAAACTCT 59.170 37.037 0.00 0.00 0.00 3.24
373 374 7.201617 CGGTGTAAAATGAGGGAATCTAAACTC 60.202 40.741 0.00 0.00 0.00 3.01
374 375 6.598064 CGGTGTAAAATGAGGGAATCTAAACT 59.402 38.462 0.00 0.00 0.00 2.66
375 376 6.373495 ACGGTGTAAAATGAGGGAATCTAAAC 59.627 38.462 0.00 0.00 0.00 2.01
376 377 6.478129 ACGGTGTAAAATGAGGGAATCTAAA 58.522 36.000 0.00 0.00 0.00 1.85
377 378 6.057321 ACGGTGTAAAATGAGGGAATCTAA 57.943 37.500 0.00 0.00 0.00 2.10
378 379 5.687166 ACGGTGTAAAATGAGGGAATCTA 57.313 39.130 0.00 0.00 0.00 1.98
379 380 4.569719 ACGGTGTAAAATGAGGGAATCT 57.430 40.909 0.00 0.00 0.00 2.40
380 381 5.820947 ACATACGGTGTAAAATGAGGGAATC 59.179 40.000 0.00 0.00 39.91 2.52
381 382 5.751586 ACATACGGTGTAAAATGAGGGAAT 58.248 37.500 0.00 0.00 39.91 3.01
382 383 5.168647 ACATACGGTGTAAAATGAGGGAA 57.831 39.130 0.00 0.00 39.91 3.97
383 384 4.829872 ACATACGGTGTAAAATGAGGGA 57.170 40.909 0.00 0.00 39.91 4.20
384 385 4.938832 TCAACATACGGTGTAAAATGAGGG 59.061 41.667 0.00 0.00 41.14 4.30
385 386 5.642063 AGTCAACATACGGTGTAAAATGAGG 59.358 40.000 0.00 0.00 41.14 3.86
386 387 6.721571 AGTCAACATACGGTGTAAAATGAG 57.278 37.500 0.00 0.00 41.14 2.90
387 388 8.604640 TTAAGTCAACATACGGTGTAAAATGA 57.395 30.769 0.00 0.00 41.14 2.57
388 389 9.834628 ATTTAAGTCAACATACGGTGTAAAATG 57.165 29.630 0.00 0.00 41.14 2.32
394 395 9.275398 TCTAAAATTTAAGTCAACATACGGTGT 57.725 29.630 0.00 0.00 44.84 4.16
395 396 9.755064 CTCTAAAATTTAAGTCAACATACGGTG 57.245 33.333 0.00 0.00 0.00 4.94
396 397 9.498176 ACTCTAAAATTTAAGTCAACATACGGT 57.502 29.630 0.00 0.00 0.00 4.83
425 426 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
432 433 4.083003 GGACAACATACGGAGCAAAATGAA 60.083 41.667 0.00 0.00 0.00 2.57
434 435 3.727673 CGGACAACATACGGAGCAAAATG 60.728 47.826 0.00 0.00 0.00 2.32
443 444 1.418367 CAACGCGGACAACATACGG 59.582 57.895 12.47 0.00 0.00 4.02
458 459 8.884726 GGTATAAGTCTTTTCAGAGATTCCAAC 58.115 37.037 0.00 0.00 0.00 3.77
462 463 6.993308 GGGGGTATAAGTCTTTTCAGAGATTC 59.007 42.308 0.00 0.00 0.00 2.52
470 471 5.648330 ATGGAGGGGGTATAAGTCTTTTC 57.352 43.478 0.00 0.00 0.00 2.29
484 485 6.868339 GCGATAAATAATTTTGAATGGAGGGG 59.132 38.462 0.00 0.00 0.00 4.79
486 487 6.582295 CCGCGATAAATAATTTTGAATGGAGG 59.418 38.462 8.23 0.00 0.00 4.30
487 488 7.359595 TCCGCGATAAATAATTTTGAATGGAG 58.640 34.615 8.23 0.00 0.00 3.86
489 490 7.922505 TTCCGCGATAAATAATTTTGAATGG 57.077 32.000 8.23 0.00 0.00 3.16
493 494 9.743057 ATTCATTTCCGCGATAAATAATTTTGA 57.257 25.926 8.23 4.75 0.00 2.69
495 496 9.528018 ACATTCATTTCCGCGATAAATAATTTT 57.472 25.926 8.23 0.00 0.00 1.82
567 568 6.875195 CCTCCGTCCTAAATTACTTGTTACAA 59.125 38.462 0.00 0.00 0.00 2.41
602 603 3.411351 CACGAAACGCACTCCCCG 61.411 66.667 0.00 0.00 0.00 5.73
603 604 3.047877 CCACGAAACGCACTCCCC 61.048 66.667 0.00 0.00 0.00 4.81
605 606 1.300697 ACTCCACGAAACGCACTCC 60.301 57.895 0.00 0.00 0.00 3.85
612 613 6.664515 TGAAATGTTTATCACTCCACGAAAC 58.335 36.000 0.00 0.00 0.00 2.78
616 617 5.996219 TGTTGAAATGTTTATCACTCCACG 58.004 37.500 0.00 0.00 0.00 4.94
855 858 2.520741 GGAGAGGAGAGGAGCGGG 60.521 72.222 0.00 0.00 0.00 6.13
863 866 1.585651 GGTGGGGAGAGGAGAGGAGA 61.586 65.000 0.00 0.00 0.00 3.71
1226 1255 3.090532 ATGGAGACCGCCTTCCCC 61.091 66.667 0.00 0.00 0.00 4.81
1364 1393 1.764854 GGCTATTCCCGAGTCCCCA 60.765 63.158 0.00 0.00 0.00 4.96
1368 1397 0.389757 GAGGTGGCTATTCCCGAGTC 59.610 60.000 0.00 0.00 0.00 3.36
1405 1440 1.029408 TCGAGAGAGTGAGAGGCAGC 61.029 60.000 0.00 0.00 34.84 5.25
1462 1501 5.292834 CGCTCACAAAGATCAATCATACACT 59.707 40.000 0.00 0.00 0.00 3.55
1494 1533 0.108585 ATTTCCCATGACCCGATCGG 59.891 55.000 27.65 27.65 37.81 4.18
1597 1636 0.930310 CATTCCCACAGTCGCATACG 59.070 55.000 0.00 0.00 42.01 3.06
1598 1637 0.657840 GCATTCCCACAGTCGCATAC 59.342 55.000 0.00 0.00 0.00 2.39
1688 1729 5.297776 ACAATAATTGGCTGATCCTTCTTCG 59.702 40.000 0.00 0.00 35.26 3.79
1810 1855 2.299582 TGCTACAAAACAATGCATGGCT 59.700 40.909 0.00 0.00 0.00 4.75
1985 2041 4.158394 ACTTGAAATGTTTGTGACAGCACT 59.842 37.500 0.00 0.00 45.36 4.40
2012 2068 3.906008 CCAGAATAGCGAACAACAAAACG 59.094 43.478 0.00 0.00 0.00 3.60
2118 2175 3.706086 ACCTCAGCATCAACCAAAAAGTT 59.294 39.130 0.00 0.00 0.00 2.66
2313 2374 2.776312 CATGATCAGCTTGTCCATGC 57.224 50.000 0.09 0.00 0.00 4.06
2331 2392 0.750546 GCCAGGCAGATCAGATTGCA 60.751 55.000 6.55 0.00 42.02 4.08
2383 2444 2.322161 CACCCGACAAACACTACTACG 58.678 52.381 0.00 0.00 0.00 3.51
2402 2463 5.777850 ATTATTGTGCATGATTAGCAGCA 57.222 34.783 0.00 0.00 43.63 4.41
2425 2486 2.203153 GCCAACCGTGCCCGATAT 60.203 61.111 0.00 0.00 35.63 1.63
2434 2495 1.876497 GCATGTCCATTGCCAACCGT 61.876 55.000 0.00 0.00 0.00 4.83
2452 2513 3.818773 TCCCTACAAACACTGCTTTAAGC 59.181 43.478 10.38 10.38 42.82 3.09
2470 2531 1.907255 AGCTTAGCCGTAACTTTCCCT 59.093 47.619 0.00 0.00 0.00 4.20
2507 2568 0.373716 GTTGGACGGCGCAGATAAAG 59.626 55.000 16.26 0.00 0.00 1.85
2517 2578 0.527565 AAATGATGCAGTTGGACGGC 59.472 50.000 0.00 0.00 39.77 5.68
2551 2613 3.119955 TCAGACAACTATCGAGTGTTCGG 60.120 47.826 3.28 0.00 46.67 4.30
2594 2656 9.613428 TCTTTGAGAGTAAGATGAACTTGAAAA 57.387 29.630 0.00 0.00 39.38 2.29
2724 2786 4.646945 TGAAACTGGGTGCTTGTCAATTTA 59.353 37.500 0.00 0.00 0.00 1.40
2779 2848 8.422566 AGGTTAAATTATGTCCGTTTCCAAAAA 58.577 29.630 0.00 0.00 0.00 1.94
2780 2849 7.953752 AGGTTAAATTATGTCCGTTTCCAAAA 58.046 30.769 0.00 0.00 0.00 2.44
3065 3135 8.131455 ACATAGATATGAAAACACACATCGTC 57.869 34.615 6.84 0.00 37.15 4.20
3168 3239 3.264947 CACTGACATGGACCATACTGTG 58.735 50.000 22.99 22.99 0.00 3.66
3669 3748 2.370849 TCAAGGTTGTACAGGGAGAACC 59.629 50.000 2.40 2.40 38.54 3.62
3670 3749 3.764237 TCAAGGTTGTACAGGGAGAAC 57.236 47.619 0.00 0.00 0.00 3.01
3671 3750 4.781775 TTTCAAGGTTGTACAGGGAGAA 57.218 40.909 0.00 0.00 0.00 2.87
3672 3751 4.781775 TTTTCAAGGTTGTACAGGGAGA 57.218 40.909 0.00 0.00 0.00 3.71
3673 3752 4.261031 CGTTTTTCAAGGTTGTACAGGGAG 60.261 45.833 0.00 0.00 0.00 4.30
3674 3753 3.628487 CGTTTTTCAAGGTTGTACAGGGA 59.372 43.478 0.00 0.00 0.00 4.20
3675 3754 3.628487 TCGTTTTTCAAGGTTGTACAGGG 59.372 43.478 0.00 0.00 0.00 4.45
3676 3755 4.886247 TCGTTTTTCAAGGTTGTACAGG 57.114 40.909 0.00 0.00 0.00 4.00
3695 3774 3.482722 AGAATGCTGCTTGTCAAATCG 57.517 42.857 0.00 0.00 0.00 3.34
3947 4026 1.857217 CTAGTAGCTGCATGCACTTCG 59.143 52.381 18.46 8.43 45.94 3.79
4001 4080 3.437049 GCTGTACATCTGGAACAACTTCC 59.563 47.826 0.00 0.00 45.89 3.46
4184 4264 3.723235 CTGGCAGATGCGTAGGCGT 62.723 63.158 9.42 0.85 44.10 5.68
4377 4458 5.368145 GCATCTACCATGACAAGTTCCATA 58.632 41.667 0.00 0.00 0.00 2.74
4475 4570 6.612247 TGAGCGAAGTTCAAGTCAAATAAA 57.388 33.333 3.32 0.00 46.71 1.40
4624 4720 2.436417 ACAACAACATGGATCCCTTCG 58.564 47.619 9.90 0.00 0.00 3.79
5436 6006 8.588290 AGTGCCAGTAAAAACCATATTCATAA 57.412 30.769 0.00 0.00 0.00 1.90
5604 6406 5.798125 TCAGCTTCTATCTTACCATCCTG 57.202 43.478 0.00 0.00 0.00 3.86
5847 6649 2.754552 GCATGCAGTGGTCCATTTCTTA 59.245 45.455 14.21 0.00 0.00 2.10
6365 7285 2.173382 GTGTGAACATGGCGTCGC 59.827 61.111 9.22 9.22 0.00 5.19
6370 7290 1.446907 CTGAGAGGTGTGAACATGGC 58.553 55.000 0.00 0.00 0.00 4.40
6565 7486 3.804036 TCTTCGAAGAAACTTTGCCTCA 58.196 40.909 25.19 0.00 45.90 3.86
6596 7517 4.646945 TGTCACCCAAAGATTGTGCTTTAA 59.353 37.500 0.00 0.00 36.39 1.52
6682 7603 2.304761 CACCCAAGTAGCTAAACCCTCA 59.695 50.000 0.00 0.00 0.00 3.86
6934 7855 4.227864 AGCTACAGAAGGAGGATTTTGG 57.772 45.455 0.00 0.00 0.00 3.28
6954 7875 4.792528 GATTTCCTCTCTGCAATCGAAG 57.207 45.455 0.00 0.00 0.00 3.79
6962 7892 1.205893 ACCTGACGATTTCCTCTCTGC 59.794 52.381 0.00 0.00 0.00 4.26
6979 7909 6.377429 TGAGATCGTAAGTAATGACAGAACCT 59.623 38.462 0.00 0.00 39.48 3.50
6980 7910 6.561614 TGAGATCGTAAGTAATGACAGAACC 58.438 40.000 0.00 0.00 39.48 3.62
7025 7956 3.517296 TCCATGTGGCTGTAAAGGAAA 57.483 42.857 0.00 0.00 34.44 3.13
7026 7957 3.737559 ATCCATGTGGCTGTAAAGGAA 57.262 42.857 0.00 0.00 34.44 3.36
7033 7964 2.821969 GTTGAAGAATCCATGTGGCTGT 59.178 45.455 0.00 0.00 34.44 4.40
7340 8275 3.903208 GCCCCAAGAGAAGGCATAA 57.097 52.632 0.00 0.00 46.34 1.90
7351 8286 6.423776 AACATAATAATCATTGGCCCCAAG 57.576 37.500 0.00 0.00 39.47 3.61
7414 8349 4.910746 ATAAAGTGATCGTATGCATCGC 57.089 40.909 0.19 0.00 0.00 4.58
7446 8381 9.214957 TGTTGTATGACTTTATAAGGTCTTGTG 57.785 33.333 23.46 0.00 34.01 3.33
7488 8423 3.479006 CGACAATTTGTTGCTTAGACGG 58.521 45.455 3.08 0.00 0.00 4.79
7504 8439 2.453521 ACTGGATAGGTGTAGCGACAA 58.546 47.619 0.00 0.00 37.31 3.18
7506 8441 4.644103 TTAACTGGATAGGTGTAGCGAC 57.356 45.455 0.00 0.00 0.00 5.19
7526 8461 1.450531 GCTATCTGCGCCCTTGCATT 61.451 55.000 4.18 0.00 45.26 3.56
7569 8505 3.608662 GCAAGTGGCTTGGCTGCA 61.609 61.111 10.38 0.00 41.31 4.41
7576 8512 1.302033 CAGACTCGGCAAGTGGCTT 60.302 57.895 3.18 0.00 44.01 4.35
7597 8533 2.434185 CGCCATACCAGTGTGCGT 60.434 61.111 0.00 0.00 0.00 5.24
7599 8535 3.177600 CACGCCATACCAGTGTGC 58.822 61.111 0.00 0.00 38.74 4.57
7609 8545 2.898738 CCTCTGAGAGCACGCCAT 59.101 61.111 6.17 0.00 0.00 4.40
7610 8546 4.074526 GCCTCTGAGAGCACGCCA 62.075 66.667 6.17 0.00 0.00 5.69
7646 8582 1.895798 ACAGTTCTGAAGATGGAGCGA 59.104 47.619 6.83 0.00 0.00 4.93
7674 8610 2.100916 GCTAGACCGAGCAAGGTTGATA 59.899 50.000 4.58 0.00 46.09 2.15
7706 8642 4.692475 GTTAGGCGCCGTGGTGGT 62.692 66.667 23.20 3.61 41.21 4.16
7720 8656 1.987855 CAGGGAGGAGGTGCCGTTA 60.988 63.158 0.00 0.00 43.04 3.18
7741 8677 1.078709 GACGTGCTCAGCTATTTGCA 58.921 50.000 0.00 0.00 45.94 4.08
7747 8683 2.648320 GATCGCGACGTGCTCAGCTA 62.648 60.000 12.93 0.00 43.27 3.32
7764 8700 1.410517 CTGAGGTGTATCAGTGGCGAT 59.589 52.381 0.00 0.00 41.52 4.58
7861 8798 1.066502 TGCTACGCTTTGTCATGCCTA 60.067 47.619 0.00 0.00 0.00 3.93
8228 9167 1.956869 TCTTCTTCCAGAGATGGCCA 58.043 50.000 8.56 8.56 33.49 5.36
8252 9191 4.367023 GCCGCTGGTGGACGTGTA 62.367 66.667 0.00 0.00 0.00 2.90
8307 9248 2.043227 GGCTTGTCTACCTCTAGGCAT 58.957 52.381 0.00 0.00 34.48 4.40
8319 9260 2.342648 GTTCGTCGGGGCTTGTCT 59.657 61.111 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.