Multiple sequence alignment - TraesCS2D01G335100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G335100 chr2D 100.000 6755 0 0 1 6755 427975376 427968622 0.000000e+00 12475.0
1 TraesCS2D01G335100 chr2D 95.532 940 32 6 1682 2613 89883607 89884544 0.000000e+00 1495.0
2 TraesCS2D01G335100 chr2D 95.197 937 37 5 1682 2613 637887973 637887040 0.000000e+00 1474.0
3 TraesCS2D01G335100 chr2D 95.284 933 35 3 1682 2613 612458566 612457642 0.000000e+00 1471.0
4 TraesCS2D01G335100 chr2D 94.798 942 40 7 1676 2613 625541589 625542525 0.000000e+00 1459.0
5 TraesCS2D01G335100 chr2D 94.564 883 32 10 1682 2552 193114457 193115335 0.000000e+00 1351.0
6 TraesCS2D01G335100 chr2D 97.512 201 3 2 2601 2799 427972871 427972671 6.490000e-90 342.0
7 TraesCS2D01G335100 chr2D 91.848 184 9 3 2691 2868 101426645 101426828 1.120000e-62 252.0
8 TraesCS2D01G335100 chr2D 91.351 185 9 4 2691 2868 636432624 636432808 5.230000e-61 246.0
9 TraesCS2D01G335100 chr2B 95.060 3826 122 21 2941 6755 505009008 505005239 0.000000e+00 5956.0
10 TraesCS2D01G335100 chr2B 94.021 1957 87 16 2941 4890 512304024 512305957 0.000000e+00 2939.0
11 TraesCS2D01G335100 chr2B 91.438 946 65 9 1679 2613 769775841 769776781 0.000000e+00 1284.0
12 TraesCS2D01G335100 chr2B 96.970 759 21 2 5078 5835 512305954 512306711 0.000000e+00 1273.0
13 TraesCS2D01G335100 chr2B 93.317 823 21 14 1 800 512301152 512301963 0.000000e+00 1184.0
14 TraesCS2D01G335100 chr2B 94.109 645 8 4 858 1474 512303384 512304026 0.000000e+00 953.0
15 TraesCS2D01G335100 chr2B 89.184 564 23 15 936 1474 505009556 505009006 0.000000e+00 669.0
16 TraesCS2D01G335100 chr2B 91.713 362 26 3 5840 6197 512306775 512307136 3.640000e-137 499.0
17 TraesCS2D01G335100 chr2B 89.717 389 28 4 6370 6755 512307276 512307655 2.830000e-133 486.0
18 TraesCS2D01G335100 chr2B 88.831 385 39 4 3359 3741 166210752 166210370 2.850000e-128 470.0
19 TraesCS2D01G335100 chr2B 81.559 526 71 18 42 547 794089837 794090356 1.750000e-110 411.0
20 TraesCS2D01G335100 chr2B 81.559 526 71 18 42 547 794106273 794106792 1.750000e-110 411.0
21 TraesCS2D01G335100 chr2B 91.406 128 8 2 6257 6384 512307135 512307259 9.010000e-39 172.0
22 TraesCS2D01G335100 chr2A 93.884 3270 147 26 2941 6197 559606952 559610181 0.000000e+00 4881.0
23 TraesCS2D01G335100 chr2A 89.587 557 19 13 944 1474 559606411 559606954 0.000000e+00 671.0
24 TraesCS2D01G335100 chr2A 90.305 361 26 2 6372 6732 559610339 559610690 1.330000e-126 464.0
25 TraesCS2D01G335100 chr2A 91.275 149 9 2 6237 6384 559610174 559610319 4.130000e-47 200.0
26 TraesCS2D01G335100 chr2A 97.674 43 1 0 916 958 559606352 559606394 2.610000e-09 75.0
27 TraesCS2D01G335100 chr2A 86.364 66 9 0 4736 4801 753732757 753732692 9.400000e-09 73.1
28 TraesCS2D01G335100 chr2A 100.000 34 0 0 866 899 559606319 559606352 5.660000e-06 63.9
29 TraesCS2D01G335100 chr4D 94.854 1166 29 14 1475 2613 56353673 56352512 0.000000e+00 1792.0
30 TraesCS2D01G335100 chr4D 95.945 937 31 4 1682 2613 25183678 25182744 0.000000e+00 1513.0
31 TraesCS2D01G335100 chr4D 92.857 182 6 4 2694 2868 56352619 56352438 2.420000e-64 257.0
32 TraesCS2D01G335100 chr4D 77.033 492 75 27 50 533 61612887 61613348 1.450000e-61 248.0
33 TraesCS2D01G335100 chr4D 91.351 185 9 4 2691 2868 499900356 499900540 5.230000e-61 246.0
34 TraesCS2D01G335100 chr4D 78.275 313 47 15 188 484 6476903 6477210 1.500000e-41 182.0
35 TraesCS2D01G335100 chr4D 78.767 292 47 13 191 475 63215594 63215877 1.500000e-41 182.0
36 TraesCS2D01G335100 chr4D 93.519 108 5 2 2601 2706 56352619 56352512 7.010000e-35 159.0
37 TraesCS2D01G335100 chr4D 92.793 111 6 2 2598 2706 496492529 496492639 7.010000e-35 159.0
38 TraesCS2D01G335100 chr4D 83.333 72 11 1 4735 4805 434487865 434487936 1.570000e-06 65.8
39 TraesCS2D01G335100 chr4D 84.507 71 6 5 4735 4802 479156644 479156712 1.570000e-06 65.8
40 TraesCS2D01G335100 chr4D 87.719 57 4 3 3843 3897 434348288 434348343 5.660000e-06 63.9
41 TraesCS2D01G335100 chr7D 94.613 1151 38 17 1475 2613 549258671 549257533 0.000000e+00 1760.0
42 TraesCS2D01G335100 chr7D 95.208 939 32 5 1679 2613 71622794 71623723 0.000000e+00 1472.0
43 TraesCS2D01G335100 chr7D 92.267 569 33 6 1475 2039 627631401 627631962 0.000000e+00 797.0
44 TraesCS2D01G335100 chr7D 80.449 312 56 4 5435 5742 41800439 41800749 4.070000e-57 233.0
45 TraesCS2D01G335100 chr7D 93.694 111 5 2 2598 2706 5842909 5843019 1.510000e-36 165.0
46 TraesCS2D01G335100 chr7D 100.000 56 0 0 2868 2923 12568414 12568469 3.330000e-18 104.0
47 TraesCS2D01G335100 chr7D 100.000 52 0 0 2868 2919 106580655 106580706 5.580000e-16 97.1
48 TraesCS2D01G335100 chr7D 84.211 76 9 3 4735 4808 351906808 351906734 3.380000e-08 71.3
49 TraesCS2D01G335100 chr7D 88.235 51 6 0 4513 4563 628721633 628721583 2.030000e-05 62.1
50 TraesCS2D01G335100 chr5D 94.517 1149 43 14 1475 2613 433194285 433195423 0.000000e+00 1755.0
51 TraesCS2D01G335100 chr5D 83.459 399 55 10 118 508 78118056 78118451 1.790000e-95 361.0
52 TraesCS2D01G335100 chr5D 79.493 473 70 19 81 533 236225295 236224830 1.830000e-80 311.0
53 TraesCS2D01G335100 chr5D 84.286 70 10 1 4735 4803 167171686 167171617 4.370000e-07 67.6
54 TraesCS2D01G335100 chr3D 94.358 1152 43 13 1475 2613 26672682 26671540 0.000000e+00 1748.0
55 TraesCS2D01G335100 chr3D 90.566 318 21 4 1475 1787 21418660 21418973 4.870000e-111 412.0
56 TraesCS2D01G335100 chr3D 91.973 299 15 4 1475 1768 571454845 571455139 1.750000e-110 411.0
57 TraesCS2D01G335100 chr3D 77.578 611 82 37 97 691 29419738 29419167 1.090000e-82 318.0
58 TraesCS2D01G335100 chr3D 91.398 186 8 5 2691 2868 21440283 21440468 1.450000e-61 248.0
59 TraesCS2D01G335100 chr3D 91.351 185 8 5 2691 2868 31416322 31416505 5.230000e-61 246.0
60 TraesCS2D01G335100 chr3D 98.214 56 1 0 2868 2923 16146429 16146374 1.550000e-16 99.0
61 TraesCS2D01G335100 chr3D 96.667 60 1 1 2868 2926 26314693 26314634 1.550000e-16 99.0
62 TraesCS2D01G335100 chr3D 96.610 59 2 0 2868 2926 566963433 566963491 1.550000e-16 99.0
63 TraesCS2D01G335100 chr3D 87.302 63 8 0 4739 4801 19786995 19786933 9.400000e-09 73.1
64 TraesCS2D01G335100 chr3D 85.507 69 10 0 4734 4802 443171586 443171654 9.400000e-09 73.1
65 TraesCS2D01G335100 chr1D 91.970 1183 35 11 1475 2613 363628 364794 0.000000e+00 1604.0
66 TraesCS2D01G335100 chr1D 96.471 850 28 2 1766 2613 412774920 412775769 0.000000e+00 1402.0
67 TraesCS2D01G335100 chr1D 81.292 449 70 11 93 533 28507868 28508310 1.080000e-92 351.0
68 TraesCS2D01G335100 chr1D 78.465 469 72 22 76 533 473730394 473730844 5.160000e-71 279.0
69 TraesCS2D01G335100 chr1D 81.250 352 55 9 188 533 473730542 473730888 2.400000e-69 274.0
70 TraesCS2D01G335100 chr1D 80.952 315 47 13 228 533 3112282 3112592 3.150000e-58 237.0
71 TraesCS2D01G335100 chr1D 81.185 287 41 12 268 547 250957949 250958229 1.140000e-52 219.0
72 TraesCS2D01G335100 chr1D 92.793 111 6 2 2598 2706 12560696 12560806 7.010000e-35 159.0
73 TraesCS2D01G335100 chr1D 93.519 108 5 2 2601 2706 396739480 396739373 7.010000e-35 159.0
74 TraesCS2D01G335100 chr1D 85.915 71 7 3 4735 4803 304854999 304854930 9.400000e-09 73.1
75 TraesCS2D01G335100 chr5A 87.792 385 41 5 3359 3741 684324426 684324806 4.810000e-121 446.0
76 TraesCS2D01G335100 chr5A 78.156 499 86 16 52 537 575206076 575206564 5.120000e-76 296.0
77 TraesCS2D01G335100 chr5A 97.561 41 1 0 4464 4504 353843977 353844017 3.380000e-08 71.3
78 TraesCS2D01G335100 chr1B 84.753 446 49 17 50 484 92552828 92553265 4.840000e-116 429.0
79 TraesCS2D01G335100 chr1B 82.136 487 59 19 65 533 363448446 363447970 6.350000e-105 392.0
80 TraesCS2D01G335100 chr1A 87.013 385 44 6 3359 3741 297885630 297885250 4.840000e-116 429.0
81 TraesCS2D01G335100 chr1A 80.638 470 66 22 81 533 353655042 353654581 2.330000e-89 340.0
82 TraesCS2D01G335100 chr1A 82.973 370 45 15 168 529 456287477 456287118 1.090000e-82 318.0
83 TraesCS2D01G335100 chr1A 86.617 269 31 4 264 528 29614690 29614957 6.630000e-75 292.0
84 TraesCS2D01G335100 chr1A 85.294 68 9 1 4735 4801 82354931 82354864 1.220000e-07 69.4
85 TraesCS2D01G335100 chr1A 83.784 74 11 1 4735 4807 344027459 344027532 1.220000e-07 69.4
86 TraesCS2D01G335100 chr6B 83.226 465 59 16 116 570 518676140 518676595 6.310000e-110 409.0
87 TraesCS2D01G335100 chr6D 91.639 299 16 4 1475 1768 3053578 3053872 8.160000e-109 405.0
88 TraesCS2D01G335100 chr6D 80.368 489 63 17 260 724 311244472 311244951 2.330000e-89 340.0
89 TraesCS2D01G335100 chr6D 80.510 431 70 13 51 475 438156303 438156725 1.090000e-82 318.0
90 TraesCS2D01G335100 chr6D 80.159 378 59 13 144 512 61861408 61861038 1.120000e-67 268.0
91 TraesCS2D01G335100 chr6D 78.384 458 65 25 99 550 395898540 395898969 4.020000e-67 267.0
92 TraesCS2D01G335100 chr6D 81.275 251 31 12 188 431 122682692 122682451 8.940000e-44 189.0
93 TraesCS2D01G335100 chr6D 92.793 111 6 2 2598 2706 13124848 13124958 7.010000e-35 159.0
94 TraesCS2D01G335100 chr6D 93.519 108 5 2 2601 2706 453497049 453496942 7.010000e-35 159.0
95 TraesCS2D01G335100 chr6D 96.610 59 2 0 2868 2926 15164115 15164173 1.550000e-16 99.0
96 TraesCS2D01G335100 chr6D 86.441 59 7 1 4735 4792 112463321 112463379 5.660000e-06 63.9
97 TraesCS2D01G335100 chr6D 92.105 38 3 0 4765 4802 222243547 222243510 3.000000e-03 54.7
98 TraesCS2D01G335100 chr7A 78.431 714 82 51 50 722 195481516 195482198 3.800000e-107 399.0
99 TraesCS2D01G335100 chr7A 79.538 303 62 0 5435 5737 41449777 41450079 4.100000e-52 217.0
100 TraesCS2D01G335100 chr7A 78.977 176 31 5 6486 6657 548577247 548577420 1.540000e-21 115.0
101 TraesCS2D01G335100 chr7A 91.228 57 4 1 4735 4790 96392792 96392848 7.260000e-10 76.8
102 TraesCS2D01G335100 chr7A 92.308 39 1 2 3842 3879 139420329 139420292 3.000000e-03 54.7
103 TraesCS2D01G335100 chr4B 82.143 448 67 12 94 533 571906118 571906560 8.270000e-99 372.0
104 TraesCS2D01G335100 chr4B 81.633 98 15 3 4709 4805 75348092 75347997 2.020000e-10 78.7
105 TraesCS2D01G335100 chr4B 86.154 65 9 0 4738 4802 387105100 387105036 3.380000e-08 71.3
106 TraesCS2D01G335100 chr4B 85.075 67 10 0 4738 4804 276843207 276843273 1.220000e-07 69.4
107 TraesCS2D01G335100 chr4B 88.136 59 6 1 4735 4792 673087523 673087581 1.220000e-07 69.4
108 TraesCS2D01G335100 chr7B 81.818 462 62 14 80 527 159030193 159029740 1.070000e-97 368.0
109 TraesCS2D01G335100 chr7B 93.878 49 2 1 4464 4512 680654780 680654827 9.400000e-09 73.1
110 TraesCS2D01G335100 chr6A 79.688 512 75 21 42 537 161944414 161943916 6.490000e-90 342.0
111 TraesCS2D01G335100 chrUn 91.398 186 8 5 2691 2868 33125075 33125260 1.450000e-61 248.0
112 TraesCS2D01G335100 chrUn 91.351 185 9 4 2691 2868 33191009 33191193 5.230000e-61 246.0
113 TraesCS2D01G335100 chrUn 76.750 400 68 20 168 556 108611122 108610737 4.130000e-47 200.0
114 TraesCS2D01G335100 chrUn 79.705 271 33 11 269 529 21365374 21365632 6.960000e-40 176.0
115 TraesCS2D01G335100 chrUn 92.793 111 6 2 2598 2706 10261706 10261816 7.010000e-35 159.0
116 TraesCS2D01G335100 chrUn 75.517 290 51 14 188 466 42214404 42214684 2.560000e-24 124.0
117 TraesCS2D01G335100 chrUn 100.000 51 0 0 2868 2918 19124565 19124515 2.010000e-15 95.3
118 TraesCS2D01G335100 chrUn 100.000 51 0 0 2868 2918 21540777 21540727 2.010000e-15 95.3
119 TraesCS2D01G335100 chrUn 100.000 51 0 0 2868 2918 68038799 68038849 2.010000e-15 95.3
120 TraesCS2D01G335100 chrUn 76.404 178 27 9 187 349 28325611 28325434 1.560000e-11 82.4
121 TraesCS2D01G335100 chr5B 87.023 131 14 3 3355 3485 596545107 596544980 1.960000e-30 145.0
122 TraesCS2D01G335100 chr5B 95.556 45 2 0 4463 4507 300394638 300394594 9.400000e-09 73.1
123 TraesCS2D01G335100 chr3A 90.654 107 8 2 3379 3485 52067064 52066960 2.540000e-29 141.0
124 TraesCS2D01G335100 chr3A 89.815 108 9 2 3379 3486 52163981 52163876 3.290000e-28 137.0
125 TraesCS2D01G335100 chr3A 79.570 93 11 6 4704 4792 200913203 200913291 7.320000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G335100 chr2D 427968622 427975376 6754 True 6408.500000 12475 98.756000 1 6755 2 chr2D.!!$R3 6754
1 TraesCS2D01G335100 chr2D 89883607 89884544 937 False 1495.000000 1495 95.532000 1682 2613 1 chr2D.!!$F1 931
2 TraesCS2D01G335100 chr2D 637887040 637887973 933 True 1474.000000 1474 95.197000 1682 2613 1 chr2D.!!$R2 931
3 TraesCS2D01G335100 chr2D 612457642 612458566 924 True 1471.000000 1471 95.284000 1682 2613 1 chr2D.!!$R1 931
4 TraesCS2D01G335100 chr2D 625541589 625542525 936 False 1459.000000 1459 94.798000 1676 2613 1 chr2D.!!$F4 937
5 TraesCS2D01G335100 chr2D 193114457 193115335 878 False 1351.000000 1351 94.564000 1682 2552 1 chr2D.!!$F3 870
6 TraesCS2D01G335100 chr2B 505005239 505009556 4317 True 3312.500000 5956 92.122000 936 6755 2 chr2B.!!$R2 5819
7 TraesCS2D01G335100 chr2B 769775841 769776781 940 False 1284.000000 1284 91.438000 1679 2613 1 chr2B.!!$F1 934
8 TraesCS2D01G335100 chr2B 512301152 512307655 6503 False 1072.285714 2939 93.036143 1 6755 7 chr2B.!!$F4 6754
9 TraesCS2D01G335100 chr2B 794089837 794090356 519 False 411.000000 411 81.559000 42 547 1 chr2B.!!$F2 505
10 TraesCS2D01G335100 chr2B 794106273 794106792 519 False 411.000000 411 81.559000 42 547 1 chr2B.!!$F3 505
11 TraesCS2D01G335100 chr2A 559606319 559610690 4371 False 1059.150000 4881 93.787500 866 6732 6 chr2A.!!$F1 5866
12 TraesCS2D01G335100 chr4D 25182744 25183678 934 True 1513.000000 1513 95.945000 1682 2613 1 chr4D.!!$R1 931
13 TraesCS2D01G335100 chr4D 56352438 56353673 1235 True 736.000000 1792 93.743333 1475 2868 3 chr4D.!!$R2 1393
14 TraesCS2D01G335100 chr7D 549257533 549258671 1138 True 1760.000000 1760 94.613000 1475 2613 1 chr7D.!!$R2 1138
15 TraesCS2D01G335100 chr7D 71622794 71623723 929 False 1472.000000 1472 95.208000 1679 2613 1 chr7D.!!$F4 934
16 TraesCS2D01G335100 chr7D 627631401 627631962 561 False 797.000000 797 92.267000 1475 2039 1 chr7D.!!$F6 564
17 TraesCS2D01G335100 chr5D 433194285 433195423 1138 False 1755.000000 1755 94.517000 1475 2613 1 chr5D.!!$F2 1138
18 TraesCS2D01G335100 chr3D 26671540 26672682 1142 True 1748.000000 1748 94.358000 1475 2613 1 chr3D.!!$R4 1138
19 TraesCS2D01G335100 chr3D 29419167 29419738 571 True 318.000000 318 77.578000 97 691 1 chr3D.!!$R5 594
20 TraesCS2D01G335100 chr1D 363628 364794 1166 False 1604.000000 1604 91.970000 1475 2613 1 chr1D.!!$F1 1138
21 TraesCS2D01G335100 chr1D 412774920 412775769 849 False 1402.000000 1402 96.471000 1766 2613 1 chr1D.!!$F6 847
22 TraesCS2D01G335100 chr7A 195481516 195482198 682 False 399.000000 399 78.431000 50 722 1 chr7A.!!$F3 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 2298 0.605319 CGCAAGACTAGGTTTGGGCA 60.605 55.000 10.92 0.0 43.02 5.36 F
1746 3360 1.134907 AGGCATTAGTACCGGTTCACG 60.135 52.381 15.04 0.0 43.80 4.35 F
2666 4573 1.285667 TGAGCAATGATGATGGGTGGT 59.714 47.619 0.00 0.0 0.00 4.16 F
4321 6251 0.033503 CCCAAACCTATCCCGGCTTT 60.034 55.000 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2741 4648 0.033796 CACCACCCCTCATCATTGCT 60.034 55.000 0.00 0.0 0.00 3.91 R
2742 4649 0.034186 TCACCACCCCTCATCATTGC 60.034 55.000 0.00 0.0 0.00 3.56 R
4593 6523 1.372872 TCGCCCGCATACATGATCG 60.373 57.895 0.00 0.0 0.00 3.69 R
6113 8110 0.815734 CGGAGAAGTACATGGTCCGT 59.184 55.000 14.45 0.0 44.18 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.889409 ACAAACTATACATGAATGGGCCAG 59.111 41.667 13.78 0.00 0.00 4.85
38 39 2.442236 TGAATGGGCCAGGAGAATTC 57.558 50.000 13.78 10.40 0.00 2.17
157 171 7.962964 TTCATTCTCACTCTACATTTTCGTT 57.037 32.000 0.00 0.00 0.00 3.85
402 436 9.793252 CAAGATTTTCGAATAATGGTTCAAGAT 57.207 29.630 0.00 0.00 0.00 2.40
512 547 7.922505 TTCGGATACTTGTTCAACATTTTTG 57.077 32.000 0.00 0.00 0.00 2.44
635 670 7.463469 AAAATAAAGCAAGAAACAAGAACGG 57.537 32.000 0.00 0.00 0.00 4.44
692 727 4.100084 CGCACTGATGGGCTGGGA 62.100 66.667 0.00 0.00 31.21 4.37
740 775 3.979497 CCCCTGCCCCGGAAAGTT 61.979 66.667 0.73 0.00 0.00 2.66
741 776 2.361230 CCCTGCCCCGGAAAGTTC 60.361 66.667 0.73 0.00 0.00 3.01
743 778 1.675641 CCTGCCCCGGAAAGTTCTG 60.676 63.158 0.73 0.00 0.00 3.02
744 779 1.073199 CTGCCCCGGAAAGTTCTGT 59.927 57.895 0.73 0.00 31.55 3.41
746 781 0.766131 TGCCCCGGAAAGTTCTGTTA 59.234 50.000 0.73 0.00 31.55 2.41
747 782 1.162698 GCCCCGGAAAGTTCTGTTAC 58.837 55.000 0.73 0.00 31.55 2.50
748 783 1.543871 GCCCCGGAAAGTTCTGTTACA 60.544 52.381 0.73 0.00 31.55 2.41
749 784 2.423577 CCCCGGAAAGTTCTGTTACAG 58.576 52.381 0.73 5.94 31.55 2.74
750 785 2.038033 CCCCGGAAAGTTCTGTTACAGA 59.962 50.000 11.42 11.42 38.87 3.41
751 786 3.326747 CCCGGAAAGTTCTGTTACAGAG 58.673 50.000 14.99 2.16 41.75 3.35
752 787 3.244112 CCCGGAAAGTTCTGTTACAGAGT 60.244 47.826 14.99 4.45 41.75 3.24
753 788 4.021719 CCCGGAAAGTTCTGTTACAGAGTA 60.022 45.833 14.99 0.00 41.75 2.59
754 789 5.510179 CCCGGAAAGTTCTGTTACAGAGTAA 60.510 44.000 14.99 0.00 41.75 2.24
755 790 6.164176 CCGGAAAGTTCTGTTACAGAGTAAT 58.836 40.000 14.99 4.11 41.75 1.89
756 791 6.310711 CCGGAAAGTTCTGTTACAGAGTAATC 59.689 42.308 14.99 11.99 41.75 1.75
797 832 4.323417 TCTAGAAGCAGCAAATCGGAAAA 58.677 39.130 0.00 0.00 0.00 2.29
798 833 3.565905 AGAAGCAGCAAATCGGAAAAG 57.434 42.857 0.00 0.00 0.00 2.27
799 834 3.149196 AGAAGCAGCAAATCGGAAAAGA 58.851 40.909 0.00 0.00 0.00 2.52
800 835 3.760684 AGAAGCAGCAAATCGGAAAAGAT 59.239 39.130 0.00 0.00 0.00 2.40
801 836 4.219288 AGAAGCAGCAAATCGGAAAAGATT 59.781 37.500 0.00 0.00 42.13 2.40
802 837 3.841643 AGCAGCAAATCGGAAAAGATTG 58.158 40.909 0.00 0.00 40.39 2.67
803 838 3.256631 AGCAGCAAATCGGAAAAGATTGT 59.743 39.130 0.00 0.00 40.39 2.71
804 839 3.609807 GCAGCAAATCGGAAAAGATTGTC 59.390 43.478 0.00 0.00 40.39 3.18
806 841 5.091431 CAGCAAATCGGAAAAGATTGTCTC 58.909 41.667 0.00 0.00 40.39 3.36
807 842 4.761739 AGCAAATCGGAAAAGATTGTCTCA 59.238 37.500 0.00 0.00 40.39 3.27
808 843 5.416952 AGCAAATCGGAAAAGATTGTCTCAT 59.583 36.000 0.00 0.00 40.39 2.90
809 844 6.071728 AGCAAATCGGAAAAGATTGTCTCATT 60.072 34.615 0.00 0.00 40.39 2.57
811 846 7.411157 GCAAATCGGAAAAGATTGTCTCATTTG 60.411 37.037 11.63 11.63 40.39 2.32
813 848 6.241207 TCGGAAAAGATTGTCTCATTTGTC 57.759 37.500 0.00 0.00 0.00 3.18
814 849 5.997746 TCGGAAAAGATTGTCTCATTTGTCT 59.002 36.000 0.00 0.00 0.00 3.41
816 851 6.073058 CGGAAAAGATTGTCTCATTTGTCTCA 60.073 38.462 0.00 0.00 0.00 3.27
817 852 7.520453 CGGAAAAGATTGTCTCATTTGTCTCAA 60.520 37.037 0.00 0.00 0.00 3.02
818 853 8.137437 GGAAAAGATTGTCTCATTTGTCTCAAA 58.863 33.333 0.00 0.00 0.00 2.69
819 854 9.520204 GAAAAGATTGTCTCATTTGTCTCAAAA 57.480 29.630 0.00 0.00 0.00 2.44
820 855 9.525409 AAAAGATTGTCTCATTTGTCTCAAAAG 57.475 29.630 0.00 0.00 0.00 2.27
824 859 9.520204 GATTGTCTCATTTGTCTCAAAAGAAAA 57.480 29.630 0.00 1.78 31.93 2.29
825 860 9.874205 ATTGTCTCATTTGTCTCAAAAGAAAAA 57.126 25.926 0.00 0.00 41.80 1.94
826 861 8.915871 TGTCTCATTTGTCTCAAAAGAAAAAG 57.084 30.769 0.00 0.00 41.08 2.27
827 862 7.975616 TGTCTCATTTGTCTCAAAAGAAAAAGG 59.024 33.333 0.00 0.00 41.08 3.11
828 863 8.190784 GTCTCATTTGTCTCAAAAGAAAAAGGA 58.809 33.333 5.59 5.59 43.68 3.36
829 864 8.748412 TCTCATTTGTCTCAAAAGAAAAAGGAA 58.252 29.630 6.82 0.00 44.62 3.36
831 866 9.717942 TCATTTGTCTCAAAAGAAAAAGGAAAA 57.282 25.926 3.63 0.00 43.21 2.29
835 870 9.942850 TTGTCTCAAAAGAAAAAGGAAAAGATT 57.057 25.926 0.00 0.00 31.93 2.40
837 872 9.371136 GTCTCAAAAGAAAAAGGAAAAGATTGT 57.629 29.630 0.00 0.00 31.93 2.71
838 873 9.586435 TCTCAAAAGAAAAAGGAAAAGATTGTC 57.414 29.630 0.00 0.00 0.00 3.18
839 874 9.591792 CTCAAAAGAAAAAGGAAAAGATTGTCT 57.408 29.630 0.00 0.00 0.00 3.41
840 875 9.586435 TCAAAAGAAAAAGGAAAAGATTGTCTC 57.414 29.630 0.00 0.00 0.00 3.36
843 878 9.942850 AAAGAAAAAGGAAAAGATTGTCTCAAA 57.057 25.926 0.00 0.00 0.00 2.69
844 879 9.942850 AAGAAAAAGGAAAAGATTGTCTCAAAA 57.057 25.926 0.00 0.00 0.00 2.44
845 880 9.942850 AGAAAAAGGAAAAGATTGTCTCAAAAA 57.057 25.926 0.00 0.00 0.00 1.94
899 2298 0.605319 CGCAAGACTAGGTTTGGGCA 60.605 55.000 10.92 0.00 43.02 5.36
900 2299 1.839424 GCAAGACTAGGTTTGGGCAT 58.161 50.000 9.61 0.00 0.00 4.40
1360 2860 1.593196 TGAGCAAACGGGAGACAAAG 58.407 50.000 0.00 0.00 0.00 2.77
1516 3017 1.971357 CATACGCCCTCATTAGTCCCT 59.029 52.381 0.00 0.00 0.00 4.20
1525 3026 6.715264 CGCCCTCATTAGTCCCTAAAATAATT 59.285 38.462 0.00 0.00 29.35 1.40
1532 3033 8.899771 CATTAGTCCCTAAAATAATTGAACCGT 58.100 33.333 0.00 0.00 29.35 4.83
1674 3179 2.204059 AAGGTCCTCAGGCTGGCT 60.204 61.111 15.73 0.00 0.00 4.75
1698 3246 1.226575 GCCTTTAATCGCGGTTGGC 60.227 57.895 16.41 15.70 38.69 4.52
1700 3248 1.309499 CCTTTAATCGCGGTTGGCCA 61.309 55.000 16.41 0.00 38.94 5.36
1739 3353 3.139077 GGGATTTGAGGCATTAGTACCG 58.861 50.000 0.00 0.00 0.00 4.02
1740 3354 3.139077 GGATTTGAGGCATTAGTACCGG 58.861 50.000 0.00 0.00 0.00 5.28
1741 3355 3.433173 GGATTTGAGGCATTAGTACCGGT 60.433 47.826 13.98 13.98 0.00 5.28
1742 3356 3.706600 TTTGAGGCATTAGTACCGGTT 57.293 42.857 15.04 0.00 0.00 4.44
1743 3357 2.973694 TGAGGCATTAGTACCGGTTC 57.026 50.000 15.04 8.12 0.00 3.62
1744 3358 2.181125 TGAGGCATTAGTACCGGTTCA 58.819 47.619 15.04 3.60 0.00 3.18
1745 3359 2.093869 TGAGGCATTAGTACCGGTTCAC 60.094 50.000 15.04 5.73 0.00 3.18
1746 3360 1.134907 AGGCATTAGTACCGGTTCACG 60.135 52.381 15.04 0.00 43.80 4.35
1787 3401 1.596496 CCCATCAAACTCTACCCCCT 58.404 55.000 0.00 0.00 0.00 4.79
2039 3742 7.228840 TCGAAAAGTTACATCCGAATTTAACG 58.771 34.615 0.00 0.00 34.58 3.18
2279 4103 9.573133 GTGGTCAAACTAATTATTCCAGAAATG 57.427 33.333 0.00 0.00 0.00 2.32
2624 4531 8.885494 TTTAGAAATTTGAATGTTGAAGGGTG 57.115 30.769 0.00 0.00 0.00 4.61
2625 4532 6.729690 AGAAATTTGAATGTTGAAGGGTGA 57.270 33.333 0.00 0.00 0.00 4.02
2626 4533 7.307131 AGAAATTTGAATGTTGAAGGGTGAT 57.693 32.000 0.00 0.00 0.00 3.06
2627 4534 7.738847 AGAAATTTGAATGTTGAAGGGTGATT 58.261 30.769 0.00 0.00 0.00 2.57
2628 4535 8.869109 AGAAATTTGAATGTTGAAGGGTGATTA 58.131 29.630 0.00 0.00 0.00 1.75
2629 4536 9.143631 GAAATTTGAATGTTGAAGGGTGATTAG 57.856 33.333 0.00 0.00 0.00 1.73
2630 4537 8.421249 AATTTGAATGTTGAAGGGTGATTAGA 57.579 30.769 0.00 0.00 0.00 2.10
2631 4538 7.452880 TTTGAATGTTGAAGGGTGATTAGAG 57.547 36.000 0.00 0.00 0.00 2.43
2632 4539 6.373005 TGAATGTTGAAGGGTGATTAGAGA 57.627 37.500 0.00 0.00 0.00 3.10
2633 4540 6.962182 TGAATGTTGAAGGGTGATTAGAGAT 58.038 36.000 0.00 0.00 0.00 2.75
2634 4541 7.405292 TGAATGTTGAAGGGTGATTAGAGATT 58.595 34.615 0.00 0.00 0.00 2.40
2635 4542 8.548025 TGAATGTTGAAGGGTGATTAGAGATTA 58.452 33.333 0.00 0.00 0.00 1.75
2636 4543 8.970859 AATGTTGAAGGGTGATTAGAGATTAG 57.029 34.615 0.00 0.00 0.00 1.73
2637 4544 7.733773 TGTTGAAGGGTGATTAGAGATTAGA 57.266 36.000 0.00 0.00 0.00 2.10
2638 4545 7.786030 TGTTGAAGGGTGATTAGAGATTAGAG 58.214 38.462 0.00 0.00 0.00 2.43
2639 4546 6.985653 TGAAGGGTGATTAGAGATTAGAGG 57.014 41.667 0.00 0.00 0.00 3.69
2640 4547 6.683537 TGAAGGGTGATTAGAGATTAGAGGA 58.316 40.000 0.00 0.00 0.00 3.71
2641 4548 7.309091 TGAAGGGTGATTAGAGATTAGAGGAT 58.691 38.462 0.00 0.00 0.00 3.24
2642 4549 8.456940 TGAAGGGTGATTAGAGATTAGAGGATA 58.543 37.037 0.00 0.00 0.00 2.59
2643 4550 9.315363 GAAGGGTGATTAGAGATTAGAGGATAA 57.685 37.037 0.00 0.00 0.00 1.75
2644 4551 9.676129 AAGGGTGATTAGAGATTAGAGGATAAA 57.324 33.333 0.00 0.00 0.00 1.40
2645 4552 9.851267 AGGGTGATTAGAGATTAGAGGATAAAT 57.149 33.333 0.00 0.00 0.00 1.40
2654 4561 9.504708 AGAGATTAGAGGATAAATTGAGCAATG 57.495 33.333 0.00 0.00 0.00 2.82
2655 4562 9.499479 GAGATTAGAGGATAAATTGAGCAATGA 57.501 33.333 0.00 0.00 0.00 2.57
2658 4565 9.803507 ATTAGAGGATAAATTGAGCAATGATGA 57.196 29.630 0.00 0.00 0.00 2.92
2659 4566 9.803507 TTAGAGGATAAATTGAGCAATGATGAT 57.196 29.630 0.00 0.00 0.00 2.45
2660 4567 8.112016 AGAGGATAAATTGAGCAATGATGATG 57.888 34.615 0.00 0.00 0.00 3.07
2661 4568 7.176865 AGAGGATAAATTGAGCAATGATGATGG 59.823 37.037 0.00 0.00 0.00 3.51
2662 4569 6.210784 AGGATAAATTGAGCAATGATGATGGG 59.789 38.462 0.00 0.00 0.00 4.00
2663 4570 6.014840 GGATAAATTGAGCAATGATGATGGGT 60.015 38.462 0.00 0.00 0.00 4.51
2664 4571 4.665833 AATTGAGCAATGATGATGGGTG 57.334 40.909 0.00 0.00 0.00 4.61
2665 4572 2.061509 TGAGCAATGATGATGGGTGG 57.938 50.000 0.00 0.00 0.00 4.61
2666 4573 1.285667 TGAGCAATGATGATGGGTGGT 59.714 47.619 0.00 0.00 0.00 4.16
2667 4574 1.679680 GAGCAATGATGATGGGTGGTG 59.320 52.381 0.00 0.00 0.00 4.17
2668 4575 1.285667 AGCAATGATGATGGGTGGTGA 59.714 47.619 0.00 0.00 0.00 4.02
2669 4576 2.091499 AGCAATGATGATGGGTGGTGAT 60.091 45.455 0.00 0.00 0.00 3.06
2670 4577 2.696707 GCAATGATGATGGGTGGTGATT 59.303 45.455 0.00 0.00 0.00 2.57
2671 4578 3.890756 GCAATGATGATGGGTGGTGATTA 59.109 43.478 0.00 0.00 0.00 1.75
2672 4579 4.022589 GCAATGATGATGGGTGGTGATTAG 60.023 45.833 0.00 0.00 0.00 1.73
2673 4580 5.379187 CAATGATGATGGGTGGTGATTAGA 58.621 41.667 0.00 0.00 0.00 2.10
2674 4581 4.694760 TGATGATGGGTGGTGATTAGAG 57.305 45.455 0.00 0.00 0.00 2.43
2675 4582 4.297768 TGATGATGGGTGGTGATTAGAGA 58.702 43.478 0.00 0.00 0.00 3.10
2676 4583 4.909695 TGATGATGGGTGGTGATTAGAGAT 59.090 41.667 0.00 0.00 0.00 2.75
2677 4584 5.370584 TGATGATGGGTGGTGATTAGAGATT 59.629 40.000 0.00 0.00 0.00 2.40
2678 4585 6.558394 TGATGATGGGTGGTGATTAGAGATTA 59.442 38.462 0.00 0.00 0.00 1.75
2679 4586 6.425210 TGATGGGTGGTGATTAGAGATTAG 57.575 41.667 0.00 0.00 0.00 1.73
2680 4587 6.143206 TGATGGGTGGTGATTAGAGATTAGA 58.857 40.000 0.00 0.00 0.00 2.10
2681 4588 6.268617 TGATGGGTGGTGATTAGAGATTAGAG 59.731 42.308 0.00 0.00 0.00 2.43
2682 4589 4.901849 TGGGTGGTGATTAGAGATTAGAGG 59.098 45.833 0.00 0.00 0.00 3.69
2683 4590 4.902448 GGGTGGTGATTAGAGATTAGAGGT 59.098 45.833 0.00 0.00 0.00 3.85
2684 4591 5.367060 GGGTGGTGATTAGAGATTAGAGGTT 59.633 44.000 0.00 0.00 0.00 3.50
2685 4592 6.553852 GGGTGGTGATTAGAGATTAGAGGTTA 59.446 42.308 0.00 0.00 0.00 2.85
2686 4593 7.070821 GGGTGGTGATTAGAGATTAGAGGTTAA 59.929 40.741 0.00 0.00 0.00 2.01
2687 4594 8.483758 GGTGGTGATTAGAGATTAGAGGTTAAA 58.516 37.037 0.00 0.00 0.00 1.52
2688 4595 9.886132 GTGGTGATTAGAGATTAGAGGTTAAAA 57.114 33.333 0.00 0.00 0.00 1.52
2717 4624 8.885494 TTTAGAAATTTGAATGTTGAAGGGTG 57.115 30.769 0.00 0.00 0.00 4.61
2718 4625 6.729690 AGAAATTTGAATGTTGAAGGGTGA 57.270 33.333 0.00 0.00 0.00 4.02
2719 4626 7.307131 AGAAATTTGAATGTTGAAGGGTGAT 57.693 32.000 0.00 0.00 0.00 3.06
2720 4627 7.738847 AGAAATTTGAATGTTGAAGGGTGATT 58.261 30.769 0.00 0.00 0.00 2.57
2721 4628 8.869109 AGAAATTTGAATGTTGAAGGGTGATTA 58.131 29.630 0.00 0.00 0.00 1.75
2722 4629 9.143631 GAAATTTGAATGTTGAAGGGTGATTAG 57.856 33.333 0.00 0.00 0.00 1.73
2723 4630 8.421249 AATTTGAATGTTGAAGGGTGATTAGA 57.579 30.769 0.00 0.00 0.00 2.10
2724 4631 7.452880 TTTGAATGTTGAAGGGTGATTAGAG 57.547 36.000 0.00 0.00 0.00 2.43
2725 4632 6.373005 TGAATGTTGAAGGGTGATTAGAGA 57.627 37.500 0.00 0.00 0.00 3.10
2726 4633 6.962182 TGAATGTTGAAGGGTGATTAGAGAT 58.038 36.000 0.00 0.00 0.00 2.75
2727 4634 7.405292 TGAATGTTGAAGGGTGATTAGAGATT 58.595 34.615 0.00 0.00 0.00 2.40
2728 4635 8.548025 TGAATGTTGAAGGGTGATTAGAGATTA 58.452 33.333 0.00 0.00 0.00 1.75
2729 4636 8.970859 AATGTTGAAGGGTGATTAGAGATTAG 57.029 34.615 0.00 0.00 0.00 1.73
2730 4637 7.733773 TGTTGAAGGGTGATTAGAGATTAGA 57.266 36.000 0.00 0.00 0.00 2.10
2731 4638 7.786030 TGTTGAAGGGTGATTAGAGATTAGAG 58.214 38.462 0.00 0.00 0.00 2.43
2732 4639 6.985653 TGAAGGGTGATTAGAGATTAGAGG 57.014 41.667 0.00 0.00 0.00 3.69
2733 4640 6.683537 TGAAGGGTGATTAGAGATTAGAGGA 58.316 40.000 0.00 0.00 0.00 3.71
2734 4641 7.309091 TGAAGGGTGATTAGAGATTAGAGGAT 58.691 38.462 0.00 0.00 0.00 3.24
2735 4642 8.456940 TGAAGGGTGATTAGAGATTAGAGGATA 58.543 37.037 0.00 0.00 0.00 2.59
2736 4643 9.315363 GAAGGGTGATTAGAGATTAGAGGATAA 57.685 37.037 0.00 0.00 0.00 1.75
2737 4644 9.676129 AAGGGTGATTAGAGATTAGAGGATAAA 57.324 33.333 0.00 0.00 0.00 1.40
2738 4645 9.851267 AGGGTGATTAGAGATTAGAGGATAAAT 57.149 33.333 0.00 0.00 0.00 1.40
2747 4654 9.504708 AGAGATTAGAGGATAAATTGAGCAATG 57.495 33.333 0.00 0.00 0.00 2.82
2748 4655 9.499479 GAGATTAGAGGATAAATTGAGCAATGA 57.501 33.333 0.00 0.00 0.00 2.57
2751 4658 9.803507 ATTAGAGGATAAATTGAGCAATGATGA 57.196 29.630 0.00 0.00 0.00 2.92
2752 4659 7.747155 AGAGGATAAATTGAGCAATGATGAG 57.253 36.000 0.00 0.00 0.00 2.90
2753 4660 6.715718 AGAGGATAAATTGAGCAATGATGAGG 59.284 38.462 0.00 0.00 0.00 3.86
2754 4661 5.773680 AGGATAAATTGAGCAATGATGAGGG 59.226 40.000 0.00 0.00 0.00 4.30
2755 4662 5.047519 GGATAAATTGAGCAATGATGAGGGG 60.048 44.000 0.00 0.00 0.00 4.79
2756 4663 3.393426 AATTGAGCAATGATGAGGGGT 57.607 42.857 0.00 0.00 0.00 4.95
2757 4664 2.133281 TTGAGCAATGATGAGGGGTG 57.867 50.000 0.00 0.00 0.00 4.61
2758 4665 0.256752 TGAGCAATGATGAGGGGTGG 59.743 55.000 0.00 0.00 0.00 4.61
2759 4666 0.257039 GAGCAATGATGAGGGGTGGT 59.743 55.000 0.00 0.00 0.00 4.16
2760 4667 0.033796 AGCAATGATGAGGGGTGGTG 60.034 55.000 0.00 0.00 0.00 4.17
2761 4668 0.034186 GCAATGATGAGGGGTGGTGA 60.034 55.000 0.00 0.00 0.00 4.02
2762 4669 1.410648 GCAATGATGAGGGGTGGTGAT 60.411 52.381 0.00 0.00 0.00 3.06
2763 4670 2.951787 GCAATGATGAGGGGTGGTGATT 60.952 50.000 0.00 0.00 0.00 2.57
2764 4671 3.688126 GCAATGATGAGGGGTGGTGATTA 60.688 47.826 0.00 0.00 0.00 1.75
2765 4672 4.139786 CAATGATGAGGGGTGGTGATTAG 58.860 47.826 0.00 0.00 0.00 1.73
2766 4673 3.129262 TGATGAGGGGTGGTGATTAGA 57.871 47.619 0.00 0.00 0.00 2.10
2767 4674 3.041211 TGATGAGGGGTGGTGATTAGAG 58.959 50.000 0.00 0.00 0.00 2.43
2768 4675 2.940514 TGAGGGGTGGTGATTAGAGA 57.059 50.000 0.00 0.00 0.00 3.10
2769 4676 3.421394 TGAGGGGTGGTGATTAGAGAT 57.579 47.619 0.00 0.00 0.00 2.75
2770 4677 3.736094 TGAGGGGTGGTGATTAGAGATT 58.264 45.455 0.00 0.00 0.00 2.40
2771 4678 4.890988 TGAGGGGTGGTGATTAGAGATTA 58.109 43.478 0.00 0.00 0.00 1.75
2772 4679 4.901849 TGAGGGGTGGTGATTAGAGATTAG 59.098 45.833 0.00 0.00 0.00 1.73
2773 4680 5.148502 GAGGGGTGGTGATTAGAGATTAGA 58.851 45.833 0.00 0.00 0.00 2.10
2774 4681 5.151454 AGGGGTGGTGATTAGAGATTAGAG 58.849 45.833 0.00 0.00 0.00 2.43
2775 4682 4.284746 GGGGTGGTGATTAGAGATTAGAGG 59.715 50.000 0.00 0.00 0.00 3.69
2776 4683 4.902448 GGGTGGTGATTAGAGATTAGAGGT 59.098 45.833 0.00 0.00 0.00 3.85
2777 4684 5.367060 GGGTGGTGATTAGAGATTAGAGGTT 59.633 44.000 0.00 0.00 0.00 3.50
2778 4685 6.553852 GGGTGGTGATTAGAGATTAGAGGTTA 59.446 42.308 0.00 0.00 0.00 2.85
2779 4686 7.070821 GGGTGGTGATTAGAGATTAGAGGTTAA 59.929 40.741 0.00 0.00 0.00 2.01
2780 4687 8.483758 GGTGGTGATTAGAGATTAGAGGTTAAA 58.516 37.037 0.00 0.00 0.00 1.52
2781 4688 9.886132 GTGGTGATTAGAGATTAGAGGTTAAAA 57.114 33.333 0.00 0.00 0.00 1.52
2887 4799 4.636435 CCACGTGGACGGGCCTTT 62.636 66.667 31.31 0.00 42.34 3.11
2888 4800 2.344500 CACGTGGACGGGCCTTTA 59.656 61.111 7.95 0.00 44.95 1.85
2889 4801 1.740296 CACGTGGACGGGCCTTTAG 60.740 63.158 7.95 0.00 44.95 1.85
2890 4802 2.212110 ACGTGGACGGGCCTTTAGT 61.212 57.895 0.84 0.00 44.95 2.24
2891 4803 1.447314 CGTGGACGGGCCTTTAGTC 60.447 63.158 0.84 7.66 37.63 2.59
2892 4804 1.447314 GTGGACGGGCCTTTAGTCG 60.447 63.158 0.84 0.00 37.63 4.18
2893 4805 2.510918 GGACGGGCCTTTAGTCGC 60.511 66.667 0.84 0.00 35.87 5.19
2894 4806 2.884207 GACGGGCCTTTAGTCGCG 60.884 66.667 0.84 0.00 43.02 5.87
2895 4807 4.446413 ACGGGCCTTTAGTCGCGG 62.446 66.667 6.13 0.00 41.92 6.46
2896 4808 4.446413 CGGGCCTTTAGTCGCGGT 62.446 66.667 6.13 0.00 35.43 5.68
2897 4809 2.046604 GGGCCTTTAGTCGCGGTT 60.047 61.111 6.13 0.00 0.00 4.44
2898 4810 2.104859 GGGCCTTTAGTCGCGGTTC 61.105 63.158 6.13 0.00 0.00 3.62
2899 4811 2.450345 GGCCTTTAGTCGCGGTTCG 61.450 63.158 6.13 0.00 40.15 3.95
2900 4812 1.735559 GCCTTTAGTCGCGGTTCGT 60.736 57.895 6.13 0.00 39.67 3.85
2901 4813 0.456653 GCCTTTAGTCGCGGTTCGTA 60.457 55.000 6.13 0.00 39.67 3.43
2902 4814 1.981254 CCTTTAGTCGCGGTTCGTAA 58.019 50.000 6.13 0.00 39.67 3.18
2903 4815 1.916000 CCTTTAGTCGCGGTTCGTAAG 59.084 52.381 6.13 3.09 39.67 2.34
2914 4826 4.206958 TCGTAAGAGGCGCGACTA 57.793 55.556 18.29 0.00 45.01 2.59
2915 4827 2.470156 TCGTAAGAGGCGCGACTAA 58.530 52.632 18.29 0.00 45.01 2.24
2916 4828 0.804364 TCGTAAGAGGCGCGACTAAA 59.196 50.000 18.29 0.00 45.01 1.85
2917 4829 1.189403 CGTAAGAGGCGCGACTAAAG 58.811 55.000 18.29 1.48 43.02 1.85
2918 4830 1.202110 CGTAAGAGGCGCGACTAAAGA 60.202 52.381 18.29 0.00 43.02 2.52
2919 4831 2.730090 CGTAAGAGGCGCGACTAAAGAA 60.730 50.000 18.29 0.00 43.02 2.52
2920 4832 2.450609 AAGAGGCGCGACTAAAGAAA 57.549 45.000 18.29 0.00 0.00 2.52
2921 4833 1.997669 AGAGGCGCGACTAAAGAAAG 58.002 50.000 18.29 0.00 0.00 2.62
2922 4834 1.000145 GAGGCGCGACTAAAGAAAGG 59.000 55.000 18.29 0.00 0.00 3.11
2923 4835 1.019805 AGGCGCGACTAAAGAAAGGC 61.020 55.000 16.12 0.00 0.00 4.35
2924 4836 1.424240 GCGCGACTAAAGAAAGGCC 59.576 57.895 12.10 0.00 0.00 5.19
2925 4837 1.019805 GCGCGACTAAAGAAAGGCCT 61.020 55.000 12.10 0.00 0.00 5.19
2926 4838 1.738030 GCGCGACTAAAGAAAGGCCTA 60.738 52.381 12.10 0.00 0.00 3.93
2927 4839 2.822764 CGCGACTAAAGAAAGGCCTAT 58.177 47.619 5.16 0.00 0.00 2.57
2928 4840 3.195661 CGCGACTAAAGAAAGGCCTATT 58.804 45.455 5.16 2.19 0.00 1.73
2929 4841 3.245519 CGCGACTAAAGAAAGGCCTATTC 59.754 47.826 5.16 12.47 0.00 1.75
2930 4842 4.443621 GCGACTAAAGAAAGGCCTATTCT 58.556 43.478 18.80 18.80 38.75 2.40
2931 4843 4.508492 GCGACTAAAGAAAGGCCTATTCTC 59.492 45.833 22.47 11.64 36.14 2.87
2932 4844 5.682730 GCGACTAAAGAAAGGCCTATTCTCT 60.683 44.000 22.47 15.52 36.14 3.10
2933 4845 6.461231 GCGACTAAAGAAAGGCCTATTCTCTA 60.461 42.308 22.47 15.74 36.14 2.43
2934 4846 6.919115 CGACTAAAGAAAGGCCTATTCTCTAC 59.081 42.308 22.47 14.44 36.14 2.59
2935 4847 7.127012 ACTAAAGAAAGGCCTATTCTCTACC 57.873 40.000 22.47 3.42 36.14 3.18
2936 4848 6.672657 ACTAAAGAAAGGCCTATTCTCTACCA 59.327 38.462 22.47 10.76 36.14 3.25
2937 4849 5.622346 AAGAAAGGCCTATTCTCTACCAG 57.378 43.478 22.47 0.00 36.14 4.00
2938 4850 4.625963 AGAAAGGCCTATTCTCTACCAGT 58.374 43.478 18.80 1.99 31.61 4.00
2939 4851 4.407296 AGAAAGGCCTATTCTCTACCAGTG 59.593 45.833 18.80 0.00 31.61 3.66
2940 4852 3.406512 AGGCCTATTCTCTACCAGTGT 57.593 47.619 1.29 0.00 0.00 3.55
2941 4853 3.034635 AGGCCTATTCTCTACCAGTGTG 58.965 50.000 1.29 0.00 0.00 3.82
2942 4854 2.103263 GGCCTATTCTCTACCAGTGTGG 59.897 54.545 0.00 0.00 45.02 4.17
3024 4936 1.863454 GCTATCACGGAGACAGCATTG 59.137 52.381 5.65 0.00 32.46 2.82
3523 5440 0.105593 CATGAGTAGCCAGCCATCGT 59.894 55.000 0.00 0.00 0.00 3.73
3532 5449 3.616219 AGCCAGCCATCGTATTGTAAAA 58.384 40.909 0.00 0.00 0.00 1.52
3554 5471 6.978674 AAATAGGATAGGTTCGATCTGTGA 57.021 37.500 0.00 0.00 0.00 3.58
3555 5472 6.978674 AATAGGATAGGTTCGATCTGTGAA 57.021 37.500 0.00 0.00 0.00 3.18
3556 5473 4.657436 AGGATAGGTTCGATCTGTGAAC 57.343 45.455 4.01 4.01 43.87 3.18
3671 5589 2.481185 TGAAATACTCGTTTGGCCGAAC 59.519 45.455 24.09 24.09 36.24 3.95
3973 5892 7.970102 ACTTTGTAGTACTCCATTTGTTCCTA 58.030 34.615 0.00 0.00 31.21 2.94
4315 6245 1.530283 CCCGACCCAAACCTATCCC 59.470 63.158 0.00 0.00 0.00 3.85
4321 6251 0.033503 CCCAAACCTATCCCGGCTTT 60.034 55.000 0.00 0.00 0.00 3.51
4550 6480 2.119801 TCGCTACCCTAGAACGACTT 57.880 50.000 0.00 0.00 0.00 3.01
4593 6523 2.544267 GACCCATGCAAATAGAGTACGC 59.456 50.000 0.00 0.00 0.00 4.42
4734 6664 0.618458 TACTTCAGCCCCAATCGCTT 59.382 50.000 0.00 0.00 33.17 4.68
4996 6926 1.717645 CCACACTACAACGCGTCTTAC 59.282 52.381 14.44 0.00 0.00 2.34
5088 7018 8.515414 GCATTCAGACTAAACAACCTATCTTTT 58.485 33.333 0.00 0.00 0.00 2.27
5116 7046 8.442632 CTTCTTGAAATGAAGGCAGTATATCA 57.557 34.615 0.00 0.00 42.52 2.15
5365 7296 5.284424 CGTGATATAGACGTGTTTTTCGTGA 59.716 40.000 0.00 0.00 41.64 4.35
5475 7409 0.108804 CGCACCATGAGTTCTACGGT 60.109 55.000 0.00 0.00 0.00 4.83
5845 7838 9.270640 GATCAGCTGGATTTATGTCATATATCC 57.729 37.037 24.73 24.73 41.17 2.59
5913 7906 1.378531 TTATGTTGCCGCTGGATGTC 58.621 50.000 0.00 0.00 0.00 3.06
5914 7907 0.541392 TATGTTGCCGCTGGATGTCT 59.459 50.000 0.00 0.00 0.00 3.41
5918 7911 2.279517 GCCGCTGGATGTCTACCG 60.280 66.667 0.00 0.00 0.00 4.02
5947 7940 3.398954 TTTTCTGAAGTGTTGTGTCGC 57.601 42.857 0.00 0.00 0.00 5.19
5960 7953 1.266718 TGTGTCGCCTTCATGCTTTTC 59.733 47.619 0.00 0.00 0.00 2.29
5970 7963 5.277538 GCCTTCATGCTTTTCCTCGTAATAG 60.278 44.000 0.00 0.00 0.00 1.73
5971 7964 6.049149 CCTTCATGCTTTTCCTCGTAATAGA 58.951 40.000 0.00 0.00 0.00 1.98
5974 7967 5.920840 TCATGCTTTTCCTCGTAATAGATCG 59.079 40.000 0.00 0.00 0.00 3.69
5977 7970 4.680567 GCTTTTCCTCGTAATAGATCGACC 59.319 45.833 0.00 0.00 32.65 4.79
6157 8155 6.818142 GGATGCTTTTACACTATGGCAAATTT 59.182 34.615 0.00 0.00 33.44 1.82
6211 8209 9.753674 ATAGTTACCATGGAAGAAAAATCTTCA 57.246 29.630 21.47 6.93 45.76 3.02
6212 8210 7.886338 AGTTACCATGGAAGAAAAATCTTCAC 58.114 34.615 21.47 9.41 45.76 3.18
6213 8211 5.728637 ACCATGGAAGAAAAATCTTCACC 57.271 39.130 21.47 5.44 45.76 4.02
6214 8212 4.528206 ACCATGGAAGAAAAATCTTCACCC 59.472 41.667 21.47 4.83 45.76 4.61
6215 8213 4.380867 CCATGGAAGAAAAATCTTCACCCG 60.381 45.833 5.56 5.61 45.76 5.28
6216 8214 2.556622 TGGAAGAAAAATCTTCACCCGC 59.443 45.455 17.54 3.73 45.76 6.13
6217 8215 2.556622 GGAAGAAAAATCTTCACCCGCA 59.443 45.455 17.54 0.00 45.76 5.69
6218 8216 3.005367 GGAAGAAAAATCTTCACCCGCAA 59.995 43.478 17.54 0.00 45.76 4.85
6219 8217 4.500716 GGAAGAAAAATCTTCACCCGCAAA 60.501 41.667 17.54 0.00 45.76 3.68
6220 8218 4.664150 AGAAAAATCTTCACCCGCAAAA 57.336 36.364 0.00 0.00 0.00 2.44
6221 8219 5.017294 AGAAAAATCTTCACCCGCAAAAA 57.983 34.783 0.00 0.00 0.00 1.94
6222 8220 5.049828 AGAAAAATCTTCACCCGCAAAAAG 58.950 37.500 0.00 0.00 0.00 2.27
6246 8244 7.743104 AGAAAAATCTTGTACTTAGCATGTCG 58.257 34.615 0.00 0.00 0.00 4.35
6351 8366 8.511321 AGGTTTTTGTCTTTTCCAATTTGTTTC 58.489 29.630 0.00 0.00 0.00 2.78
6459 8506 6.040955 TGGCAAATTTACTGTACAAACCATGA 59.959 34.615 0.00 0.00 0.00 3.07
6564 8611 7.872483 GTGTCCATGGAAAATTCTAACATTTGT 59.128 33.333 18.20 0.00 0.00 2.83
6645 8693 8.911247 AAAGTTGACATGTGTTTTTAGAGAAC 57.089 30.769 1.15 0.00 0.00 3.01
6708 8756 9.927668 TCCTGAATTTTCCATATTTTGAAAGAC 57.072 29.630 0.00 0.00 32.52 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
610 645 7.762159 TCCGTTCTTGTTTCTTGCTTTATTTTT 59.238 29.630 0.00 0.00 0.00 1.94
691 726 2.279517 CGCGGTAGCCCAGATGTC 60.280 66.667 0.00 0.00 41.18 3.06
692 727 2.758327 TCGCGGTAGCCCAGATGT 60.758 61.111 6.13 0.00 41.18 3.06
723 758 3.938637 GAACTTTCCGGGGCAGGGG 62.939 68.421 0.00 0.00 0.00 4.79
724 759 2.361230 GAACTTTCCGGGGCAGGG 60.361 66.667 0.00 0.00 0.00 4.45
725 760 1.675641 CAGAACTTTCCGGGGCAGG 60.676 63.158 0.00 0.00 0.00 4.85
726 761 0.537371 AACAGAACTTTCCGGGGCAG 60.537 55.000 0.00 0.00 0.00 4.85
727 762 0.766131 TAACAGAACTTTCCGGGGCA 59.234 50.000 0.00 0.00 0.00 5.36
728 763 1.162698 GTAACAGAACTTTCCGGGGC 58.837 55.000 0.00 0.00 0.00 5.80
729 764 2.038033 TCTGTAACAGAACTTTCCGGGG 59.962 50.000 0.00 0.00 37.57 5.73
730 765 3.244112 ACTCTGTAACAGAACTTTCCGGG 60.244 47.826 0.00 0.00 40.18 5.73
731 766 3.991367 ACTCTGTAACAGAACTTTCCGG 58.009 45.455 0.00 0.00 40.18 5.14
734 769 6.183360 GCCGATTACTCTGTAACAGAACTTTC 60.183 42.308 0.00 0.00 40.18 2.62
735 770 5.638234 GCCGATTACTCTGTAACAGAACTTT 59.362 40.000 0.00 0.00 40.18 2.66
737 772 4.381718 GGCCGATTACTCTGTAACAGAACT 60.382 45.833 0.00 0.00 40.18 3.01
738 773 3.864003 GGCCGATTACTCTGTAACAGAAC 59.136 47.826 0.00 0.00 40.18 3.01
739 774 3.767673 AGGCCGATTACTCTGTAACAGAA 59.232 43.478 0.00 0.00 40.18 3.02
740 775 3.130516 CAGGCCGATTACTCTGTAACAGA 59.869 47.826 0.00 0.00 38.25 3.41
741 776 3.448686 CAGGCCGATTACTCTGTAACAG 58.551 50.000 0.00 0.00 0.00 3.16
743 778 2.483188 CCCAGGCCGATTACTCTGTAAC 60.483 54.545 0.00 0.00 0.00 2.50
744 779 1.760613 CCCAGGCCGATTACTCTGTAA 59.239 52.381 0.00 0.00 0.00 2.41
746 781 1.972660 GCCCAGGCCGATTACTCTGT 61.973 60.000 0.00 0.00 34.56 3.41
747 782 1.227674 GCCCAGGCCGATTACTCTG 60.228 63.158 0.00 0.00 34.56 3.35
748 783 1.383248 AGCCCAGGCCGATTACTCT 60.383 57.895 4.70 0.00 43.17 3.24
749 784 1.227674 CAGCCCAGGCCGATTACTC 60.228 63.158 4.70 0.00 43.17 2.59
750 785 1.689233 TCAGCCCAGGCCGATTACT 60.689 57.895 4.70 0.00 43.17 2.24
751 786 1.523938 GTCAGCCCAGGCCGATTAC 60.524 63.158 4.70 0.00 43.17 1.89
752 787 0.397957 TAGTCAGCCCAGGCCGATTA 60.398 55.000 4.70 0.00 43.17 1.75
753 788 1.271840 TTAGTCAGCCCAGGCCGATT 61.272 55.000 4.70 0.00 43.17 3.34
754 789 1.689233 TTAGTCAGCCCAGGCCGAT 60.689 57.895 4.70 0.00 43.17 4.18
755 790 2.284331 TTAGTCAGCCCAGGCCGA 60.284 61.111 4.70 0.00 43.17 5.54
756 791 2.185310 AACTTAGTCAGCCCAGGCCG 62.185 60.000 4.70 0.00 43.17 6.13
797 832 8.455903 TTCTTTTGAGACAAATGAGACAATCT 57.544 30.769 10.82 0.00 0.00 2.40
798 833 9.520204 TTTTCTTTTGAGACAAATGAGACAATC 57.480 29.630 10.82 0.00 0.00 2.67
799 834 9.874205 TTTTTCTTTTGAGACAAATGAGACAAT 57.126 25.926 10.82 0.00 0.00 2.71
800 835 9.357652 CTTTTTCTTTTGAGACAAATGAGACAA 57.642 29.630 10.82 4.30 0.00 3.18
801 836 7.975616 CCTTTTTCTTTTGAGACAAATGAGACA 59.024 33.333 10.82 0.00 0.00 3.41
802 837 8.190784 TCCTTTTTCTTTTGAGACAAATGAGAC 58.809 33.333 10.82 0.00 0.00 3.36
803 838 8.292444 TCCTTTTTCTTTTGAGACAAATGAGA 57.708 30.769 10.82 6.25 0.00 3.27
804 839 8.931385 TTCCTTTTTCTTTTGAGACAAATGAG 57.069 30.769 10.82 2.72 0.00 2.90
806 841 9.977762 CTTTTCCTTTTTCTTTTGAGACAAATG 57.022 29.630 0.00 0.00 0.00 2.32
807 842 9.942850 TCTTTTCCTTTTTCTTTTGAGACAAAT 57.057 25.926 0.00 0.00 0.00 2.32
808 843 9.942850 ATCTTTTCCTTTTTCTTTTGAGACAAA 57.057 25.926 0.00 0.00 0.00 2.83
809 844 9.942850 AATCTTTTCCTTTTTCTTTTGAGACAA 57.057 25.926 0.00 0.00 0.00 3.18
811 846 9.371136 ACAATCTTTTCCTTTTTCTTTTGAGAC 57.629 29.630 0.00 0.00 0.00 3.36
813 848 9.591792 AGACAATCTTTTCCTTTTTCTTTTGAG 57.408 29.630 0.00 0.00 0.00 3.02
814 849 9.586435 GAGACAATCTTTTCCTTTTTCTTTTGA 57.414 29.630 0.00 0.00 0.00 2.69
816 851 9.942850 TTGAGACAATCTTTTCCTTTTTCTTTT 57.057 25.926 0.00 0.00 0.00 2.27
817 852 9.942850 TTTGAGACAATCTTTTCCTTTTTCTTT 57.057 25.926 0.00 0.00 0.00 2.52
818 853 9.942850 TTTTGAGACAATCTTTTCCTTTTTCTT 57.057 25.926 0.00 0.00 0.00 2.52
819 854 9.942850 TTTTTGAGACAATCTTTTCCTTTTTCT 57.057 25.926 0.00 0.00 0.00 2.52
846 881 6.391227 TCTCTCTTTTCCGATTTGCTTTTT 57.609 33.333 0.00 0.00 0.00 1.94
847 882 6.581171 ATCTCTCTTTTCCGATTTGCTTTT 57.419 33.333 0.00 0.00 0.00 2.27
848 883 6.385033 CAATCTCTCTTTTCCGATTTGCTTT 58.615 36.000 0.00 0.00 0.00 3.51
849 884 5.620879 GCAATCTCTCTTTTCCGATTTGCTT 60.621 40.000 0.00 0.00 0.00 3.91
850 885 4.142513 GCAATCTCTCTTTTCCGATTTGCT 60.143 41.667 0.00 0.00 0.00 3.91
851 886 4.101235 GCAATCTCTCTTTTCCGATTTGC 58.899 43.478 0.00 0.00 0.00 3.68
852 887 4.439289 GGGCAATCTCTCTTTTCCGATTTG 60.439 45.833 0.00 0.00 0.00 2.32
854 889 3.282885 GGGCAATCTCTCTTTTCCGATT 58.717 45.455 0.00 0.00 0.00 3.34
855 890 2.239654 TGGGCAATCTCTCTTTTCCGAT 59.760 45.455 0.00 0.00 0.00 4.18
856 891 1.628340 TGGGCAATCTCTCTTTTCCGA 59.372 47.619 0.00 0.00 0.00 4.55
900 2299 9.106070 CGATGGCGCTGGTAGTATATATATATA 57.894 37.037 7.64 8.16 0.00 0.86
1183 2669 2.494073 GTTTCAGGAGAGGATCGAGTGT 59.506 50.000 0.00 0.00 42.67 3.55
1184 2670 2.493675 TGTTTCAGGAGAGGATCGAGTG 59.506 50.000 0.00 0.00 42.67 3.51
1360 2860 2.616634 TCATCTGCAGCAGGAGAATC 57.383 50.000 22.62 0.00 45.75 2.52
1516 3017 7.868415 CCCTTTTGTCACGGTTCAATTATTTTA 59.132 33.333 0.00 0.00 0.00 1.52
1525 3026 2.131776 AACCCTTTTGTCACGGTTCA 57.868 45.000 0.00 0.00 33.22 3.18
1674 3179 0.808453 CCGCGATTAAAGGCCTTCGA 60.808 55.000 25.08 14.81 33.59 3.71
1687 3235 4.778143 GGTCTGGCCAACCGCGAT 62.778 66.667 17.70 0.00 39.70 4.58
1746 3360 1.353076 CTTTAGTACCGGTTCGTGCC 58.647 55.000 15.04 0.00 0.00 5.01
1747 3361 1.353076 CCTTTAGTACCGGTTCGTGC 58.647 55.000 15.04 0.00 0.00 5.34
1751 3365 0.107508 GGGCCCTTTAGTACCGGTTC 60.108 60.000 15.04 8.12 0.00 3.62
1787 3401 3.243053 TGAAAAGGCGGTCCGGGA 61.243 61.111 14.38 0.00 37.47 5.14
2043 3748 6.663944 TTTGAAAATGTTTAACGGGGTTTG 57.336 33.333 0.00 0.00 0.00 2.93
2450 4350 0.875059 GCCTGAGCACGCTTAACTTT 59.125 50.000 0.00 0.00 39.53 2.66
2613 4520 7.147655 CCTCTAATCTCTAATCACCCTTCAACA 60.148 40.741 0.00 0.00 0.00 3.33
2614 4521 7.070074 TCCTCTAATCTCTAATCACCCTTCAAC 59.930 40.741 0.00 0.00 0.00 3.18
2615 4522 7.132805 TCCTCTAATCTCTAATCACCCTTCAA 58.867 38.462 0.00 0.00 0.00 2.69
2616 4523 6.683537 TCCTCTAATCTCTAATCACCCTTCA 58.316 40.000 0.00 0.00 0.00 3.02
2617 4524 7.790782 ATCCTCTAATCTCTAATCACCCTTC 57.209 40.000 0.00 0.00 0.00 3.46
2618 4525 9.676129 TTTATCCTCTAATCTCTAATCACCCTT 57.324 33.333 0.00 0.00 0.00 3.95
2619 4526 9.851267 ATTTATCCTCTAATCTCTAATCACCCT 57.149 33.333 0.00 0.00 0.00 4.34
2628 4535 9.504708 CATTGCTCAATTTATCCTCTAATCTCT 57.495 33.333 0.00 0.00 0.00 3.10
2629 4536 9.499479 TCATTGCTCAATTTATCCTCTAATCTC 57.501 33.333 0.00 0.00 0.00 2.75
2632 4539 9.803507 TCATCATTGCTCAATTTATCCTCTAAT 57.196 29.630 0.00 0.00 0.00 1.73
2633 4540 9.803507 ATCATCATTGCTCAATTTATCCTCTAA 57.196 29.630 0.00 0.00 0.00 2.10
2634 4541 9.227777 CATCATCATTGCTCAATTTATCCTCTA 57.772 33.333 0.00 0.00 0.00 2.43
2635 4542 7.176865 CCATCATCATTGCTCAATTTATCCTCT 59.823 37.037 0.00 0.00 0.00 3.69
2636 4543 7.313646 CCATCATCATTGCTCAATTTATCCTC 58.686 38.462 0.00 0.00 0.00 3.71
2637 4544 6.210784 CCCATCATCATTGCTCAATTTATCCT 59.789 38.462 0.00 0.00 0.00 3.24
2638 4545 6.014840 ACCCATCATCATTGCTCAATTTATCC 60.015 38.462 0.00 0.00 0.00 2.59
2639 4546 6.866770 CACCCATCATCATTGCTCAATTTATC 59.133 38.462 0.00 0.00 0.00 1.75
2640 4547 6.239487 CCACCCATCATCATTGCTCAATTTAT 60.239 38.462 0.00 0.00 0.00 1.40
2641 4548 5.069383 CCACCCATCATCATTGCTCAATTTA 59.931 40.000 0.00 0.00 0.00 1.40
2642 4549 4.141801 CCACCCATCATCATTGCTCAATTT 60.142 41.667 0.00 0.00 0.00 1.82
2643 4550 3.386726 CCACCCATCATCATTGCTCAATT 59.613 43.478 0.00 0.00 0.00 2.32
2644 4551 2.963101 CCACCCATCATCATTGCTCAAT 59.037 45.455 0.00 0.00 0.00 2.57
2645 4552 2.291735 ACCACCCATCATCATTGCTCAA 60.292 45.455 0.00 0.00 0.00 3.02
2646 4553 1.285667 ACCACCCATCATCATTGCTCA 59.714 47.619 0.00 0.00 0.00 4.26
2647 4554 1.679680 CACCACCCATCATCATTGCTC 59.320 52.381 0.00 0.00 0.00 4.26
2648 4555 1.285667 TCACCACCCATCATCATTGCT 59.714 47.619 0.00 0.00 0.00 3.91
2649 4556 1.766494 TCACCACCCATCATCATTGC 58.234 50.000 0.00 0.00 0.00 3.56
2650 4557 5.379187 TCTAATCACCACCCATCATCATTG 58.621 41.667 0.00 0.00 0.00 2.82
2651 4558 5.370584 TCTCTAATCACCACCCATCATCATT 59.629 40.000 0.00 0.00 0.00 2.57
2652 4559 4.909695 TCTCTAATCACCACCCATCATCAT 59.090 41.667 0.00 0.00 0.00 2.45
2653 4560 4.297768 TCTCTAATCACCACCCATCATCA 58.702 43.478 0.00 0.00 0.00 3.07
2654 4561 4.963318 TCTCTAATCACCACCCATCATC 57.037 45.455 0.00 0.00 0.00 2.92
2655 4562 5.919348 AATCTCTAATCACCACCCATCAT 57.081 39.130 0.00 0.00 0.00 2.45
2656 4563 6.143206 TCTAATCTCTAATCACCACCCATCA 58.857 40.000 0.00 0.00 0.00 3.07
2657 4564 6.295575 CCTCTAATCTCTAATCACCACCCATC 60.296 46.154 0.00 0.00 0.00 3.51
2658 4565 5.545723 CCTCTAATCTCTAATCACCACCCAT 59.454 44.000 0.00 0.00 0.00 4.00
2659 4566 4.901849 CCTCTAATCTCTAATCACCACCCA 59.098 45.833 0.00 0.00 0.00 4.51
2660 4567 4.902448 ACCTCTAATCTCTAATCACCACCC 59.098 45.833 0.00 0.00 0.00 4.61
2661 4568 6.487299 AACCTCTAATCTCTAATCACCACC 57.513 41.667 0.00 0.00 0.00 4.61
2662 4569 9.886132 TTTTAACCTCTAATCTCTAATCACCAC 57.114 33.333 0.00 0.00 0.00 4.16
2691 4598 9.492973 CACCCTTCAACATTCAAATTTCTAAAT 57.507 29.630 0.00 0.00 0.00 1.40
2692 4599 8.700051 TCACCCTTCAACATTCAAATTTCTAAA 58.300 29.630 0.00 0.00 0.00 1.85
2693 4600 8.243961 TCACCCTTCAACATTCAAATTTCTAA 57.756 30.769 0.00 0.00 0.00 2.10
2694 4601 7.831691 TCACCCTTCAACATTCAAATTTCTA 57.168 32.000 0.00 0.00 0.00 2.10
2695 4602 6.729690 TCACCCTTCAACATTCAAATTTCT 57.270 33.333 0.00 0.00 0.00 2.52
2696 4603 7.967890 AATCACCCTTCAACATTCAAATTTC 57.032 32.000 0.00 0.00 0.00 2.17
2697 4604 8.869109 TCTAATCACCCTTCAACATTCAAATTT 58.131 29.630 0.00 0.00 0.00 1.82
2698 4605 8.421249 TCTAATCACCCTTCAACATTCAAATT 57.579 30.769 0.00 0.00 0.00 1.82
2699 4606 7.890127 TCTCTAATCACCCTTCAACATTCAAAT 59.110 33.333 0.00 0.00 0.00 2.32
2700 4607 7.230747 TCTCTAATCACCCTTCAACATTCAAA 58.769 34.615 0.00 0.00 0.00 2.69
2701 4608 6.778821 TCTCTAATCACCCTTCAACATTCAA 58.221 36.000 0.00 0.00 0.00 2.69
2702 4609 6.373005 TCTCTAATCACCCTTCAACATTCA 57.627 37.500 0.00 0.00 0.00 2.57
2703 4610 7.872113 AATCTCTAATCACCCTTCAACATTC 57.128 36.000 0.00 0.00 0.00 2.67
2704 4611 8.772250 TCTAATCTCTAATCACCCTTCAACATT 58.228 33.333 0.00 0.00 0.00 2.71
2705 4612 8.324191 TCTAATCTCTAATCACCCTTCAACAT 57.676 34.615 0.00 0.00 0.00 2.71
2706 4613 7.147655 CCTCTAATCTCTAATCACCCTTCAACA 60.148 40.741 0.00 0.00 0.00 3.33
2707 4614 7.070074 TCCTCTAATCTCTAATCACCCTTCAAC 59.930 40.741 0.00 0.00 0.00 3.18
2708 4615 7.132805 TCCTCTAATCTCTAATCACCCTTCAA 58.867 38.462 0.00 0.00 0.00 2.69
2709 4616 6.683537 TCCTCTAATCTCTAATCACCCTTCA 58.316 40.000 0.00 0.00 0.00 3.02
2710 4617 7.790782 ATCCTCTAATCTCTAATCACCCTTC 57.209 40.000 0.00 0.00 0.00 3.46
2711 4618 9.676129 TTTATCCTCTAATCTCTAATCACCCTT 57.324 33.333 0.00 0.00 0.00 3.95
2712 4619 9.851267 ATTTATCCTCTAATCTCTAATCACCCT 57.149 33.333 0.00 0.00 0.00 4.34
2721 4628 9.504708 CATTGCTCAATTTATCCTCTAATCTCT 57.495 33.333 0.00 0.00 0.00 3.10
2722 4629 9.499479 TCATTGCTCAATTTATCCTCTAATCTC 57.501 33.333 0.00 0.00 0.00 2.75
2725 4632 9.803507 TCATCATTGCTCAATTTATCCTCTAAT 57.196 29.630 0.00 0.00 0.00 1.73
2726 4633 9.281371 CTCATCATTGCTCAATTTATCCTCTAA 57.719 33.333 0.00 0.00 0.00 2.10
2727 4634 7.881751 CCTCATCATTGCTCAATTTATCCTCTA 59.118 37.037 0.00 0.00 0.00 2.43
2728 4635 6.715718 CCTCATCATTGCTCAATTTATCCTCT 59.284 38.462 0.00 0.00 0.00 3.69
2729 4636 6.072064 CCCTCATCATTGCTCAATTTATCCTC 60.072 42.308 0.00 0.00 0.00 3.71
2730 4637 5.773680 CCCTCATCATTGCTCAATTTATCCT 59.226 40.000 0.00 0.00 0.00 3.24
2731 4638 5.047519 CCCCTCATCATTGCTCAATTTATCC 60.048 44.000 0.00 0.00 0.00 2.59
2732 4639 5.537674 ACCCCTCATCATTGCTCAATTTATC 59.462 40.000 0.00 0.00 0.00 1.75
2733 4640 5.303589 CACCCCTCATCATTGCTCAATTTAT 59.696 40.000 0.00 0.00 0.00 1.40
2734 4641 4.646040 CACCCCTCATCATTGCTCAATTTA 59.354 41.667 0.00 0.00 0.00 1.40
2735 4642 3.449737 CACCCCTCATCATTGCTCAATTT 59.550 43.478 0.00 0.00 0.00 1.82
2736 4643 3.028850 CACCCCTCATCATTGCTCAATT 58.971 45.455 0.00 0.00 0.00 2.32
2737 4644 2.662866 CACCCCTCATCATTGCTCAAT 58.337 47.619 0.00 0.00 0.00 2.57
2738 4645 1.341285 CCACCCCTCATCATTGCTCAA 60.341 52.381 0.00 0.00 0.00 3.02
2739 4646 0.256752 CCACCCCTCATCATTGCTCA 59.743 55.000 0.00 0.00 0.00 4.26
2740 4647 0.257039 ACCACCCCTCATCATTGCTC 59.743 55.000 0.00 0.00 0.00 4.26
2741 4648 0.033796 CACCACCCCTCATCATTGCT 60.034 55.000 0.00 0.00 0.00 3.91
2742 4649 0.034186 TCACCACCCCTCATCATTGC 60.034 55.000 0.00 0.00 0.00 3.56
2743 4650 2.742428 ATCACCACCCCTCATCATTG 57.258 50.000 0.00 0.00 0.00 2.82
2744 4651 4.047166 TCTAATCACCACCCCTCATCATT 58.953 43.478 0.00 0.00 0.00 2.57
2745 4652 3.649981 CTCTAATCACCACCCCTCATCAT 59.350 47.826 0.00 0.00 0.00 2.45
2746 4653 3.041211 CTCTAATCACCACCCCTCATCA 58.959 50.000 0.00 0.00 0.00 3.07
2747 4654 3.309296 TCTCTAATCACCACCCCTCATC 58.691 50.000 0.00 0.00 0.00 2.92
2748 4655 3.421394 TCTCTAATCACCACCCCTCAT 57.579 47.619 0.00 0.00 0.00 2.90
2749 4656 2.940514 TCTCTAATCACCACCCCTCA 57.059 50.000 0.00 0.00 0.00 3.86
2750 4657 5.148502 TCTAATCTCTAATCACCACCCCTC 58.851 45.833 0.00 0.00 0.00 4.30
2751 4658 5.151454 CTCTAATCTCTAATCACCACCCCT 58.849 45.833 0.00 0.00 0.00 4.79
2752 4659 4.284746 CCTCTAATCTCTAATCACCACCCC 59.715 50.000 0.00 0.00 0.00 4.95
2753 4660 4.902448 ACCTCTAATCTCTAATCACCACCC 59.098 45.833 0.00 0.00 0.00 4.61
2754 4661 6.487299 AACCTCTAATCTCTAATCACCACC 57.513 41.667 0.00 0.00 0.00 4.61
2755 4662 9.886132 TTTTAACCTCTAATCTCTAATCACCAC 57.114 33.333 0.00 0.00 0.00 4.16
2829 4736 5.446260 TTAGGGTTTTAGCCTTCCTAAGG 57.554 43.478 2.39 1.13 45.25 2.69
2836 4748 3.162666 GCAGGTTTAGGGTTTTAGCCTT 58.837 45.455 2.39 0.00 45.25 4.35
2872 4784 2.163601 GACTAAAGGCCCGTCCACGT 62.164 60.000 0.00 0.00 37.29 4.49
2875 4787 2.975536 CGACTAAAGGCCCGTCCA 59.024 61.111 0.00 0.00 37.29 4.02
2878 4790 4.446413 CCGCGACTAAAGGCCCGT 62.446 66.667 8.23 0.00 0.00 5.28
2879 4791 3.945304 AACCGCGACTAAAGGCCCG 62.945 63.158 8.23 0.00 0.00 6.13
2885 4797 2.414559 CCTCTTACGAACCGCGACTAAA 60.415 50.000 8.23 0.00 44.57 1.85
2886 4798 1.131126 CCTCTTACGAACCGCGACTAA 59.869 52.381 8.23 0.00 44.57 2.24
2887 4799 0.729116 CCTCTTACGAACCGCGACTA 59.271 55.000 8.23 0.00 44.57 2.59
2888 4800 1.505353 CCTCTTACGAACCGCGACT 59.495 57.895 8.23 0.00 44.57 4.18
2889 4801 2.157073 GCCTCTTACGAACCGCGAC 61.157 63.158 8.23 0.00 44.57 5.19
2890 4802 2.180017 GCCTCTTACGAACCGCGA 59.820 61.111 8.23 0.00 44.57 5.87
2892 4804 3.551915 GCGCCTCTTACGAACCGC 61.552 66.667 0.00 0.00 33.61 5.68
2893 4805 3.245315 CGCGCCTCTTACGAACCG 61.245 66.667 0.00 0.00 0.00 4.44
2894 4806 2.157073 GTCGCGCCTCTTACGAACC 61.157 63.158 0.00 0.00 37.60 3.62
2895 4807 0.097674 TAGTCGCGCCTCTTACGAAC 59.902 55.000 0.00 0.00 37.60 3.95
2896 4808 0.804364 TTAGTCGCGCCTCTTACGAA 59.196 50.000 0.00 0.00 37.60 3.85
2897 4809 0.804364 TTTAGTCGCGCCTCTTACGA 59.196 50.000 0.00 0.00 0.00 3.43
2898 4810 1.189403 CTTTAGTCGCGCCTCTTACG 58.811 55.000 0.00 0.00 0.00 3.18
2899 4811 2.556534 TCTTTAGTCGCGCCTCTTAC 57.443 50.000 0.00 0.00 0.00 2.34
2900 4812 3.508762 CTTTCTTTAGTCGCGCCTCTTA 58.491 45.455 0.00 0.00 0.00 2.10
2901 4813 2.338500 CTTTCTTTAGTCGCGCCTCTT 58.662 47.619 0.00 0.00 0.00 2.85
2902 4814 1.404315 CCTTTCTTTAGTCGCGCCTCT 60.404 52.381 0.00 2.63 0.00 3.69
2903 4815 1.000145 CCTTTCTTTAGTCGCGCCTC 59.000 55.000 0.00 0.00 0.00 4.70
2904 4816 1.019805 GCCTTTCTTTAGTCGCGCCT 61.020 55.000 0.00 0.00 0.00 5.52
2905 4817 1.424240 GCCTTTCTTTAGTCGCGCC 59.576 57.895 0.00 0.00 0.00 6.53
2906 4818 1.019805 AGGCCTTTCTTTAGTCGCGC 61.020 55.000 0.00 0.00 0.00 6.86
2907 4819 2.288961 TAGGCCTTTCTTTAGTCGCG 57.711 50.000 12.58 0.00 0.00 5.87
2908 4820 4.443621 AGAATAGGCCTTTCTTTAGTCGC 58.556 43.478 12.58 0.00 29.12 5.19
2909 4821 5.908341 AGAGAATAGGCCTTTCTTTAGTCG 58.092 41.667 22.86 0.00 33.65 4.18
2910 4822 7.147707 TGGTAGAGAATAGGCCTTTCTTTAGTC 60.148 40.741 22.86 17.55 33.65 2.59
2911 4823 6.672657 TGGTAGAGAATAGGCCTTTCTTTAGT 59.327 38.462 22.86 14.37 33.65 2.24
2912 4824 7.125792 TGGTAGAGAATAGGCCTTTCTTTAG 57.874 40.000 22.86 0.00 33.65 1.85
2913 4825 6.672657 ACTGGTAGAGAATAGGCCTTTCTTTA 59.327 38.462 22.86 19.71 33.65 1.85
2914 4826 5.489278 ACTGGTAGAGAATAGGCCTTTCTTT 59.511 40.000 22.86 20.44 33.65 2.52
2915 4827 5.033522 ACTGGTAGAGAATAGGCCTTTCTT 58.966 41.667 22.86 16.99 33.65 2.52
2916 4828 4.407296 CACTGGTAGAGAATAGGCCTTTCT 59.593 45.833 22.45 22.45 36.16 2.52
2917 4829 4.162509 ACACTGGTAGAGAATAGGCCTTTC 59.837 45.833 12.58 14.74 0.00 2.62
2918 4830 4.080863 CACACTGGTAGAGAATAGGCCTTT 60.081 45.833 12.58 0.00 0.00 3.11
2919 4831 3.452627 CACACTGGTAGAGAATAGGCCTT 59.547 47.826 12.58 0.00 0.00 4.35
2920 4832 3.034635 CACACTGGTAGAGAATAGGCCT 58.965 50.000 11.78 11.78 0.00 5.19
2921 4833 2.103263 CCACACTGGTAGAGAATAGGCC 59.897 54.545 0.00 0.00 31.35 5.19
2922 4834 3.460857 CCACACTGGTAGAGAATAGGC 57.539 52.381 0.00 0.00 31.35 3.93
2942 4854 2.307768 TCATATCCACCGGTCTCAGAC 58.692 52.381 2.59 0.00 0.00 3.51
2950 4862 4.765339 TGTAGTACTCATCATATCCACCGG 59.235 45.833 0.00 0.00 0.00 5.28
3436 5348 7.043565 GGAATGCAGTTCATCCAACAATAAAT 58.956 34.615 0.00 0.00 38.64 1.40
3442 5354 3.159213 AGGAATGCAGTTCATCCAACA 57.841 42.857 0.00 0.00 38.64 3.33
3532 5449 6.323996 TGTTCACAGATCGAACCTATCCTATT 59.676 38.462 8.82 0.00 41.70 1.73
3618 5536 8.474025 TGCCGACAAAGAATTCCATTAATAAAT 58.526 29.630 0.65 0.00 0.00 1.40
3671 5589 3.428870 AGCTTATGACGTGTTTCGAAGTG 59.571 43.478 0.00 0.00 42.86 3.16
4272 6201 2.464796 TTCTGGGGCGATCTAGGTTA 57.535 50.000 0.00 0.00 0.00 2.85
4321 6251 3.068691 CAAGGGAGAGGGTCGCGA 61.069 66.667 3.71 3.71 43.00 5.87
4550 6480 3.856521 CACGCAATGTTTTTGAGTCAACA 59.143 39.130 4.68 1.38 37.31 3.33
4593 6523 1.372872 TCGCCCGCATACATGATCG 60.373 57.895 0.00 0.00 0.00 3.69
4996 6926 2.599082 GGCTCGACGTGTCTCTATTTTG 59.401 50.000 0.00 0.00 0.00 2.44
5088 7018 9.905713 ATATACTGCCTTCATTTCAAGAAGTTA 57.094 29.630 0.00 0.00 40.62 2.24
5329 7260 4.806247 GTCTATATCACGGCCATATCTTGC 59.194 45.833 2.24 0.00 0.00 4.01
5475 7409 6.321181 ACTGAAAAAGCAGGACATTAAAGTCA 59.679 34.615 12.51 0.00 40.29 3.41
5845 7838 2.515523 CGGCCAGCCATTCAGAGG 60.516 66.667 9.78 0.00 35.37 3.69
5947 7940 6.049149 TCTATTACGAGGAAAAGCATGAAGG 58.951 40.000 0.00 0.00 0.00 3.46
5960 7953 2.095869 CACGGGTCGATCTATTACGAGG 60.096 54.545 0.00 0.00 39.16 4.63
5970 7963 1.734163 ACAATTTCCACGGGTCGATC 58.266 50.000 0.00 0.00 0.00 3.69
5971 7964 2.194201 AACAATTTCCACGGGTCGAT 57.806 45.000 0.00 0.00 0.00 3.59
5974 7967 4.037089 ACTGTAAAACAATTTCCACGGGTC 59.963 41.667 0.00 0.00 0.00 4.46
5977 7970 5.685511 CAGAACTGTAAAACAATTTCCACGG 59.314 40.000 0.00 0.00 0.00 4.94
6113 8110 0.815734 CGGAGAAGTACATGGTCCGT 59.184 55.000 14.45 0.00 44.18 4.69
6114 8111 3.642901 CGGAGAAGTACATGGTCCG 57.357 57.895 10.38 10.38 43.82 4.79
6188 8186 7.090808 GGTGAAGATTTTTCTTCCATGGTAAC 58.909 38.462 12.58 3.44 43.94 2.50
6191 8189 4.528206 GGGTGAAGATTTTTCTTCCATGGT 59.472 41.667 12.58 0.00 43.94 3.55
6192 8190 4.380867 CGGGTGAAGATTTTTCTTCCATGG 60.381 45.833 4.97 4.97 43.94 3.66
6195 8193 2.556622 GCGGGTGAAGATTTTTCTTCCA 59.443 45.455 11.96 0.29 43.94 3.53
6196 8194 2.556622 TGCGGGTGAAGATTTTTCTTCC 59.443 45.455 11.96 5.01 43.94 3.46
6197 8195 3.915437 TGCGGGTGAAGATTTTTCTTC 57.085 42.857 8.45 8.45 44.60 2.87
6198 8196 4.664150 TTTGCGGGTGAAGATTTTTCTT 57.336 36.364 0.00 0.00 0.00 2.52
6199 8197 4.664150 TTTTGCGGGTGAAGATTTTTCT 57.336 36.364 0.00 0.00 0.00 2.52
6201 8199 5.017294 TCTTTTTGCGGGTGAAGATTTTT 57.983 34.783 0.00 0.00 0.00 1.94
6204 8202 4.664150 TTTCTTTTTGCGGGTGAAGATT 57.336 36.364 0.00 0.00 0.00 2.40
6205 8203 4.664150 TTTTCTTTTTGCGGGTGAAGAT 57.336 36.364 0.00 0.00 0.00 2.40
6206 8204 4.457834 TTTTTCTTTTTGCGGGTGAAGA 57.542 36.364 0.00 0.00 0.00 2.87
6207 8205 5.049828 AGATTTTTCTTTTTGCGGGTGAAG 58.950 37.500 0.00 0.00 0.00 3.02
6208 8206 5.017294 AGATTTTTCTTTTTGCGGGTGAA 57.983 34.783 0.00 0.00 0.00 3.18
6209 8207 4.664150 AGATTTTTCTTTTTGCGGGTGA 57.336 36.364 0.00 0.00 0.00 4.02
6210 8208 4.570369 ACAAGATTTTTCTTTTTGCGGGTG 59.430 37.500 0.00 0.00 0.00 4.61
6211 8209 4.765273 ACAAGATTTTTCTTTTTGCGGGT 58.235 34.783 0.00 0.00 0.00 5.28
6212 8210 5.983118 AGTACAAGATTTTTCTTTTTGCGGG 59.017 36.000 0.00 0.00 0.00 6.13
6213 8211 7.463469 AAGTACAAGATTTTTCTTTTTGCGG 57.537 32.000 0.00 0.00 0.00 5.69
6214 8212 8.207906 GCTAAGTACAAGATTTTTCTTTTTGCG 58.792 33.333 0.00 0.00 0.00 4.85
6215 8213 9.030301 TGCTAAGTACAAGATTTTTCTTTTTGC 57.970 29.630 0.00 0.00 0.00 3.68
6219 8217 9.899226 GACATGCTAAGTACAAGATTTTTCTTT 57.101 29.630 0.00 0.00 0.00 2.52
6220 8218 8.230486 CGACATGCTAAGTACAAGATTTTTCTT 58.770 33.333 0.00 0.00 0.00 2.52
6221 8219 7.387948 ACGACATGCTAAGTACAAGATTTTTCT 59.612 33.333 0.00 0.00 0.00 2.52
6222 8220 7.519002 ACGACATGCTAAGTACAAGATTTTTC 58.481 34.615 0.00 0.00 0.00 2.29
6300 8314 6.183360 TGTTTTGTAAAGGTCATGGCAGATTT 60.183 34.615 0.00 0.00 0.00 2.17
6301 8315 5.304101 TGTTTTGTAAAGGTCATGGCAGATT 59.696 36.000 0.00 0.00 0.00 2.40
6351 8366 2.222213 TGTTCACTAAAACATCACGGCG 59.778 45.455 4.80 4.80 34.31 6.46
6586 8634 1.039856 GGACACATGGCAAAGTTGGT 58.960 50.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.