Multiple sequence alignment - TraesCS2D01G334700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G334700 chr2D 100.000 4076 0 0 1 4076 427945437 427949512 0.000000e+00 7528.0
1 TraesCS2D01G334700 chr2D 97.051 1119 16 3 2520 3622 142706562 142705445 0.000000e+00 1868.0
2 TraesCS2D01G334700 chr2D 96.499 1114 22 3 2520 3618 288992367 288993478 0.000000e+00 1825.0
3 TraesCS2D01G334700 chr2D 86.042 566 37 19 1 560 427910468 427910997 1.640000e-158 569.0
4 TraesCS2D01G334700 chr2D 86.182 550 34 17 17 560 427927958 427928471 1.280000e-154 556.0
5 TraesCS2D01G334700 chr2D 97.771 314 4 1 1733 2043 142707093 142706780 4.640000e-149 538.0
6 TraesCS2D01G334700 chr2D 97.771 314 4 1 1733 2043 144460686 144460373 4.640000e-149 538.0
7 TraesCS2D01G334700 chr2D 96.508 315 2 4 1733 2043 288991840 288992149 2.810000e-141 512.0
8 TraesCS2D01G334700 chr2D 87.742 310 29 4 3617 3918 427910996 427911304 1.800000e-93 353.0
9 TraesCS2D01G334700 chr2D 87.097 310 31 4 3617 3918 427928470 427928778 3.900000e-90 342.0
10 TraesCS2D01G334700 chr2D 100.000 174 0 0 2268 2441 288992197 288992370 5.080000e-84 322.0
11 TraesCS2D01G334700 chr2D 94.853 136 4 3 1 133 427785330 427785465 4.130000e-50 209.0
12 TraesCS2D01G334700 chr2D 90.110 91 9 0 57 147 427915835 427915925 7.160000e-23 119.0
13 TraesCS2D01G334700 chr2D 90.110 91 9 0 57 147 427933327 427933417 7.160000e-23 119.0
14 TraesCS2D01G334700 chr2D 98.039 51 1 0 1688 1738 352980358 352980308 5.610000e-14 89.8
15 TraesCS2D01G334700 chr7D 94.161 1370 49 11 2268 3621 374079723 374081077 0.000000e+00 2058.0
16 TraesCS2D01G334700 chr7D 95.775 355 7 6 1103 1452 590811188 590810837 2.130000e-157 566.0
17 TraesCS2D01G334700 chr3A 93.805 1372 42 7 2268 3624 530203251 530204594 0.000000e+00 2023.0
18 TraesCS2D01G334700 chr3A 96.532 346 9 2 1928 2272 530202668 530203011 1.640000e-158 569.0
19 TraesCS2D01G334700 chr3A 99.419 172 1 0 1733 1904 530202151 530202322 3.060000e-81 313.0
20 TraesCS2D01G334700 chr3A 86.429 140 18 1 1392 1530 410111233 410111094 7.060000e-33 152.0
21 TraesCS2D01G334700 chr3A 82.540 126 14 5 257 379 102270845 102270725 2.000000e-18 104.0
22 TraesCS2D01G334700 chr3A 98.039 51 1 0 1688 1738 399610072 399610022 5.610000e-14 89.8
23 TraesCS2D01G334700 chr3A 83.099 71 11 1 195 265 697750238 697750169 3.400000e-06 63.9
24 TraesCS2D01G334700 chr6B 93.609 1330 35 5 2309 3619 660223038 660224336 0.000000e+00 1940.0
25 TraesCS2D01G334700 chr6B 96.591 352 9 2 1928 2278 371604976 371604627 7.590000e-162 580.0
26 TraesCS2D01G334700 chr6B 95.115 348 17 0 559 906 38067348 38067695 2.140000e-152 549.0
27 TraesCS2D01G334700 chr6B 98.039 51 1 0 1688 1738 695218731 695218681 5.610000e-14 89.8
28 TraesCS2D01G334700 chr5A 91.878 1379 60 13 2268 3621 664984314 664985665 0.000000e+00 1879.0
29 TraesCS2D01G334700 chr5A 95.954 346 13 1 1928 2272 664983728 664984073 9.890000e-156 560.0
30 TraesCS2D01G334700 chr5A 94.602 352 17 2 559 910 84396028 84396377 9.960000e-151 544.0
31 TraesCS2D01G334700 chr5A 96.853 286 5 1 1928 2213 216665678 216665397 3.690000e-130 475.0
32 TraesCS2D01G334700 chr5A 92.517 147 6 3 1550 1691 84396962 84397108 5.340000e-49 206.0
33 TraesCS2D01G334700 chr5A 87.179 156 13 3 1391 1539 684629510 684629355 1.950000e-38 171.0
34 TraesCS2D01G334700 chr5A 100.000 48 0 0 1688 1735 308143247 308143294 5.610000e-14 89.8
35 TraesCS2D01G334700 chr5A 98.039 51 1 0 1688 1738 395895552 395895502 5.610000e-14 89.8
36 TraesCS2D01G334700 chr1D 96.768 1114 20 2 2520 3618 408522756 408523868 0.000000e+00 1844.0
37 TraesCS2D01G334700 chr1D 96.450 338 12 0 550 887 207149184 207148847 3.560000e-155 558.0
38 TraesCS2D01G334700 chr1D 97.134 314 6 1 1733 2043 408522225 408522538 1.000000e-145 527.0
39 TraesCS2D01G334700 chr1D 92.537 201 15 0 906 1106 350601827 350601627 5.150000e-74 289.0
40 TraesCS2D01G334700 chr1D 97.368 114 3 0 1550 1663 207147888 207147775 1.160000e-45 195.0
41 TraesCS2D01G334700 chr1D 95.000 40 1 1 196 234 487357466 487357505 1.220000e-05 62.1
42 TraesCS2D01G334700 chr1D 97.143 35 1 0 1897 1931 185032001 185032035 4.400000e-05 60.2
43 TraesCS2D01G334700 chr3D 96.589 1114 23 1 2520 3618 54769803 54768690 0.000000e+00 1832.0
44 TraesCS2D01G334700 chr3D 96.323 1115 24 2 2520 3619 382822787 382823899 0.000000e+00 1816.0
45 TraesCS2D01G334700 chr3D 98.089 314 3 1 1733 2043 54770334 54770021 9.960000e-151 544.0
46 TraesCS2D01G334700 chr3D 99.435 177 1 0 2268 2444 54769973 54769797 5.080000e-84 322.0
47 TraesCS2D01G334700 chr3D 97.368 114 3 0 1550 1663 382821056 382821169 1.160000e-45 195.0
48 TraesCS2D01G334700 chr3D 97.368 114 3 0 1550 1663 554659551 554659664 1.160000e-45 195.0
49 TraesCS2D01G334700 chr3D 88.571 140 15 1 1392 1530 317202546 317202685 7.010000e-38 169.0
50 TraesCS2D01G334700 chr4D 96.502 1115 22 3 2520 3618 486435398 486434285 0.000000e+00 1827.0
51 TraesCS2D01G334700 chr4D 98.089 314 3 1 1733 2043 486435929 486435616 9.960000e-151 544.0
52 TraesCS2D01G334700 chr4D 99.435 177 1 0 2268 2444 486435568 486435392 5.080000e-84 322.0
53 TraesCS2D01G334700 chr6D 96.409 1114 22 3 2520 3618 76077849 76076739 0.000000e+00 1820.0
54 TraesCS2D01G334700 chr6D 96.960 329 10 0 559 887 76080875 76080547 1.660000e-153 553.0
55 TraesCS2D01G334700 chr6D 97.368 114 3 0 1550 1663 76079591 76079478 1.160000e-45 195.0
56 TraesCS2D01G334700 chr5B 91.623 1337 59 16 2309 3619 251419072 251417763 0.000000e+00 1799.0
57 TraesCS2D01G334700 chr5B 88.158 228 22 4 1103 1327 93458526 93458751 2.420000e-67 267.0
58 TraesCS2D01G334700 chr5B 90.050 201 13 1 906 1106 660199170 660199363 1.880000e-63 254.0
59 TraesCS2D01G334700 chr5B 95.804 143 6 0 1391 1533 93459335 93459477 8.810000e-57 231.0
60 TraesCS2D01G334700 chr5D 95.930 860 33 2 2760 3618 22744910 22745768 0.000000e+00 1393.0
61 TraesCS2D01G334700 chr5D 98.039 51 1 0 1688 1738 80897903 80897853 5.610000e-14 89.8
62 TraesCS2D01G334700 chr5D 100.000 48 0 0 1688 1735 90771729 90771776 5.610000e-14 89.8
63 TraesCS2D01G334700 chr2A 95.439 592 24 3 1103 1693 108517006 108516417 0.000000e+00 941.0
64 TraesCS2D01G334700 chr2A 88.246 553 37 12 1 552 559834353 559833828 1.600000e-178 636.0
65 TraesCS2D01G334700 chr2A 88.065 553 37 10 1 552 559777757 559777233 2.670000e-176 628.0
66 TraesCS2D01G334700 chr2A 87.342 553 28 18 559 1106 108518043 108517528 2.710000e-166 595.0
67 TraesCS2D01G334700 chr2A 86.420 567 36 21 1 560 559704176 559703644 2.110000e-162 582.0
68 TraesCS2D01G334700 chr2A 95.149 268 12 1 3723 3990 559671255 559670989 4.870000e-114 422.0
69 TraesCS2D01G334700 chr2A 92.517 147 6 3 1550 1691 743471909 743472055 5.340000e-49 206.0
70 TraesCS2D01G334700 chr2A 80.843 261 28 8 3617 3873 559703645 559703403 6.960000e-43 185.0
71 TraesCS2D01G334700 chr2A 93.478 46 3 0 4031 4076 559670988 559670943 7.310000e-08 69.4
72 TraesCS2D01G334700 chr1A 95.620 548 23 1 559 1106 575800342 575800888 0.000000e+00 878.0
73 TraesCS2D01G334700 chr1A 95.804 286 8 4 1928 2213 65238510 65238229 3.710000e-125 459.0
74 TraesCS2D01G334700 chr1A 95.455 286 9 1 1928 2213 588672184 588672465 1.730000e-123 453.0
75 TraesCS2D01G334700 chr1A 95.105 286 10 4 1928 2213 65258406 65258687 8.040000e-122 448.0
76 TraesCS2D01G334700 chr1A 93.706 286 10 1 1928 2213 100275533 100275256 4.870000e-114 422.0
77 TraesCS2D01G334700 chr1A 99.419 172 0 1 1733 1904 65257889 65258059 1.100000e-80 311.0
78 TraesCS2D01G334700 chr1A 88.442 199 23 0 906 1104 251594435 251594237 1.460000e-59 241.0
79 TraesCS2D01G334700 chr1A 97.143 35 1 0 1897 1931 100275842 100275808 4.400000e-05 60.2
80 TraesCS2D01G334700 chr3B 95.255 548 25 1 559 1106 804980654 804981200 0.000000e+00 867.0
81 TraesCS2D01G334700 chr3B 97.500 160 4 0 1534 1693 804981445 804981604 1.440000e-69 274.0
82 TraesCS2D01G334700 chr3B 89.055 201 22 0 906 1106 824904016 824903816 2.430000e-62 250.0
83 TraesCS2D01G334700 chr3B 87.143 140 17 1 1392 1530 401806834 401806695 1.520000e-34 158.0
84 TraesCS2D01G334700 chr2B 90.196 561 26 12 1 560 504770879 504771411 0.000000e+00 704.0
85 TraesCS2D01G334700 chr2B 91.945 509 10 3 2412 2889 800714384 800714892 0.000000e+00 684.0
86 TraesCS2D01G334700 chr2B 97.740 354 7 1 2412 2764 796606713 796607066 3.480000e-170 608.0
87 TraesCS2D01G334700 chr2B 90.234 471 33 7 3617 4076 512356652 512356184 1.620000e-168 603.0
88 TraesCS2D01G334700 chr2B 90.929 452 27 9 3635 4074 504771979 504772428 2.710000e-166 595.0
89 TraesCS2D01G334700 chr2B 88.145 523 26 13 1 522 512357156 512356669 1.260000e-164 590.0
90 TraesCS2D01G334700 chr2B 96.307 352 12 1 555 906 10611906 10611556 9.820000e-161 577.0
91 TraesCS2D01G334700 chrUn 95.302 447 5 2 2520 2951 423877244 423877689 0.000000e+00 695.0
92 TraesCS2D01G334700 chrUn 95.493 355 15 1 2411 2764 84524838 84524484 2.130000e-157 566.0
93 TraesCS2D01G334700 chrUn 97.771 314 4 1 1733 2043 423876713 423877026 4.640000e-149 538.0
94 TraesCS2D01G334700 chrUn 99.425 174 1 0 2268 2441 423877074 423877247 2.360000e-82 316.0
95 TraesCS2D01G334700 chr6A 88.545 550 29 14 558 1106 98653444 98652928 1.600000e-178 636.0
96 TraesCS2D01G334700 chr6A 99.000 100 1 0 1534 1633 98652683 98652584 3.240000e-41 180.0
97 TraesCS2D01G334700 chr6A 98.039 51 1 0 1688 1738 121648028 121647978 5.610000e-14 89.8
98 TraesCS2D01G334700 chr1B 96.264 348 13 0 559 906 29773293 29772946 4.570000e-159 571.0
99 TraesCS2D01G334700 chr4A 94.540 348 19 0 559 906 153784654 153785001 4.640000e-149 538.0
100 TraesCS2D01G334700 chr7A 95.455 286 8 2 1928 2213 576347898 576347618 6.210000e-123 451.0
101 TraesCS2D01G334700 chr7A 91.667 324 18 2 781 1104 703081192 703080878 1.340000e-119 440.0
102 TraesCS2D01G334700 chr7A 96.538 260 7 2 2439 2698 96203391 96203648 2.910000e-116 429.0
103 TraesCS2D01G334700 chr7A 100.000 48 0 0 1688 1735 96200919 96200966 5.610000e-14 89.8
104 TraesCS2D01G334700 chr7B 89.773 264 13 5 2411 2660 10583847 10583584 3.930000e-85 326.0
105 TraesCS2D01G334700 chr7B 87.444 223 25 3 1103 1324 665543896 665543676 1.880000e-63 254.0
106 TraesCS2D01G334700 chr7B 95.683 139 6 0 1391 1529 665542937 665542799 1.470000e-54 224.0
107 TraesCS2D01G334700 chr7B 95.833 120 5 0 1414 1533 23254357 23254476 1.160000e-45 195.0
108 TraesCS2D01G334700 chr7B 93.636 110 7 0 1208 1317 23248659 23248768 9.060000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G334700 chr2D 427945437 427949512 4075 False 7528.000000 7528 100.000000 1 4076 1 chr2D.!!$F4 4075
1 TraesCS2D01G334700 chr2D 142705445 142707093 1648 True 1203.000000 1868 97.411000 1733 3622 2 chr2D.!!$R3 1889
2 TraesCS2D01G334700 chr2D 288991840 288993478 1638 False 886.333333 1825 97.669000 1733 3618 3 chr2D.!!$F5 1885
3 TraesCS2D01G334700 chr2D 427910468 427911304 836 False 461.000000 569 86.892000 1 3918 2 chr2D.!!$F6 3917
4 TraesCS2D01G334700 chr2D 427927958 427928778 820 False 449.000000 556 86.639500 17 3918 2 chr2D.!!$F7 3901
5 TraesCS2D01G334700 chr7D 374079723 374081077 1354 False 2058.000000 2058 94.161000 2268 3621 1 chr7D.!!$F1 1353
6 TraesCS2D01G334700 chr3A 530202151 530204594 2443 False 968.333333 2023 96.585333 1733 3624 3 chr3A.!!$F1 1891
7 TraesCS2D01G334700 chr6B 660223038 660224336 1298 False 1940.000000 1940 93.609000 2309 3619 1 chr6B.!!$F2 1310
8 TraesCS2D01G334700 chr5A 664983728 664985665 1937 False 1219.500000 1879 93.916000 1928 3621 2 chr5A.!!$F3 1693
9 TraesCS2D01G334700 chr5A 84396028 84397108 1080 False 375.000000 544 93.559500 559 1691 2 chr5A.!!$F2 1132
10 TraesCS2D01G334700 chr1D 408522225 408523868 1643 False 1185.500000 1844 96.951000 1733 3618 2 chr1D.!!$F3 1885
11 TraesCS2D01G334700 chr1D 207147775 207149184 1409 True 376.500000 558 96.909000 550 1663 2 chr1D.!!$R2 1113
12 TraesCS2D01G334700 chr3D 382821056 382823899 2843 False 1005.500000 1816 96.845500 1550 3619 2 chr3D.!!$F3 2069
13 TraesCS2D01G334700 chr3D 54768690 54770334 1644 True 899.333333 1832 98.037667 1733 3618 3 chr3D.!!$R1 1885
14 TraesCS2D01G334700 chr4D 486434285 486435929 1644 True 897.666667 1827 98.008667 1733 3618 3 chr4D.!!$R1 1885
15 TraesCS2D01G334700 chr6D 76076739 76080875 4136 True 856.000000 1820 96.912333 559 3618 3 chr6D.!!$R1 3059
16 TraesCS2D01G334700 chr5B 251417763 251419072 1309 True 1799.000000 1799 91.623000 2309 3619 1 chr5B.!!$R1 1310
17 TraesCS2D01G334700 chr5B 93458526 93459477 951 False 249.000000 267 91.981000 1103 1533 2 chr5B.!!$F2 430
18 TraesCS2D01G334700 chr5D 22744910 22745768 858 False 1393.000000 1393 95.930000 2760 3618 1 chr5D.!!$F1 858
19 TraesCS2D01G334700 chr2A 108516417 108518043 1626 True 768.000000 941 91.390500 559 1693 2 chr2A.!!$R3 1134
20 TraesCS2D01G334700 chr2A 559833828 559834353 525 True 636.000000 636 88.246000 1 552 1 chr2A.!!$R2 551
21 TraesCS2D01G334700 chr2A 559777233 559777757 524 True 628.000000 628 88.065000 1 552 1 chr2A.!!$R1 551
22 TraesCS2D01G334700 chr2A 559703403 559704176 773 True 383.500000 582 83.631500 1 3873 2 chr2A.!!$R5 3872
23 TraesCS2D01G334700 chr1A 575800342 575800888 546 False 878.000000 878 95.620000 559 1106 1 chr1A.!!$F1 547
24 TraesCS2D01G334700 chr1A 65257889 65258687 798 False 379.500000 448 97.262000 1733 2213 2 chr1A.!!$F3 480
25 TraesCS2D01G334700 chr1A 100275256 100275842 586 True 241.100000 422 95.424500 1897 2213 2 chr1A.!!$R3 316
26 TraesCS2D01G334700 chr3B 804980654 804981604 950 False 570.500000 867 96.377500 559 1693 2 chr3B.!!$F1 1134
27 TraesCS2D01G334700 chr2B 800714384 800714892 508 False 684.000000 684 91.945000 2412 2889 1 chr2B.!!$F2 477
28 TraesCS2D01G334700 chr2B 504770879 504772428 1549 False 649.500000 704 90.562500 1 4074 2 chr2B.!!$F3 4073
29 TraesCS2D01G334700 chr2B 512356184 512357156 972 True 596.500000 603 89.189500 1 4076 2 chr2B.!!$R2 4075
30 TraesCS2D01G334700 chrUn 423876713 423877689 976 False 516.333333 695 97.499333 1733 2951 3 chrUn.!!$F1 1218
31 TraesCS2D01G334700 chr6A 98652584 98653444 860 True 408.000000 636 93.772500 558 1633 2 chr6A.!!$R2 1075
32 TraesCS2D01G334700 chr7A 96200919 96203648 2729 False 259.400000 429 98.269000 1688 2698 2 chr7A.!!$F1 1010
33 TraesCS2D01G334700 chr7B 665542799 665543896 1097 True 239.000000 254 91.563500 1103 1529 2 chr7B.!!$R2 426

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 58 0.931005 GAGTAGCATTACGCCACAGC 59.069 55.000 0.0 0.0 44.04 4.40 F
149 153 1.200948 GTTGAGGCAGATTGGTTGCTC 59.799 52.381 0.0 0.0 41.27 4.26 F
1175 2001 1.472878 CGACGAGAATCAGAAGGTCCA 59.527 52.381 0.0 0.0 33.17 4.02 F
1310 2136 1.295357 CGTGCCAAATGTCTGCCGTA 61.295 55.000 0.0 0.0 0.00 4.02 F
2189 8009 4.882671 AAGTGCTAATGCCACTAAATCG 57.117 40.909 0.0 0.0 38.71 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1175 2001 1.065199 TCTTGCAATCCAGCTCCGAAT 60.065 47.619 0.0 0.0 34.99 3.34 R
1293 2119 1.610363 TTTACGGCAGACATTTGGCA 58.390 45.000 0.0 0.0 43.26 4.92 R
2189 8009 2.185004 TAAGCCAGGCAGAACAAGAC 57.815 50.000 15.8 0.0 0.00 3.01 R
2619 8692 6.925165 AGCAAGAAACACATATTTTTGGTCTG 59.075 34.615 0.0 0.0 0.00 3.51 R
3792 9957 0.463474 GGAGACTGGAGAGCAATGGC 60.463 60.000 0.0 0.0 41.61 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 56 3.752796 GGAGTAGCATTACGCCACA 57.247 52.632 1.67 0.00 45.81 4.17
53 57 1.571919 GGAGTAGCATTACGCCACAG 58.428 55.000 1.67 0.00 45.81 3.66
54 58 0.931005 GAGTAGCATTACGCCACAGC 59.069 55.000 0.00 0.00 44.04 4.40
96 100 3.120338 CGTTGTTGTGTGTGTCTCTTGTT 60.120 43.478 0.00 0.00 0.00 2.83
98 102 4.678509 TGTTGTGTGTGTCTCTTGTTTC 57.321 40.909 0.00 0.00 0.00 2.78
99 103 4.068599 TGTTGTGTGTGTCTCTTGTTTCA 58.931 39.130 0.00 0.00 0.00 2.69
147 151 1.251251 AGTTGAGGCAGATTGGTTGC 58.749 50.000 0.00 0.00 40.80 4.17
149 153 1.200948 GTTGAGGCAGATTGGTTGCTC 59.799 52.381 0.00 0.00 41.27 4.26
156 160 3.338249 GCAGATTGGTTGCTCTAGTTCA 58.662 45.455 0.00 0.00 38.51 3.18
233 237 8.186821 GCTTTGATCTTGTATGACTTTGCTATT 58.813 33.333 0.00 0.00 0.00 1.73
235 239 9.844790 TTTGATCTTGTATGACTTTGCTATTTG 57.155 29.630 0.00 0.00 0.00 2.32
236 240 8.565896 TGATCTTGTATGACTTTGCTATTTGT 57.434 30.769 0.00 0.00 0.00 2.83
237 241 9.665719 TGATCTTGTATGACTTTGCTATTTGTA 57.334 29.630 0.00 0.00 0.00 2.41
240 244 9.448438 TCTTGTATGACTTTGCTATTTGTATGT 57.552 29.630 0.00 0.00 0.00 2.29
241 245 9.494479 CTTGTATGACTTTGCTATTTGTATGTG 57.506 33.333 0.00 0.00 0.00 3.21
242 246 8.560355 TGTATGACTTTGCTATTTGTATGTGT 57.440 30.769 0.00 0.00 0.00 3.72
243 247 9.660180 TGTATGACTTTGCTATTTGTATGTGTA 57.340 29.630 0.00 0.00 0.00 2.90
294 298 4.302455 GCTGTGTGTATCCTAGCTATGTG 58.698 47.826 0.00 0.00 0.00 3.21
295 299 4.038042 GCTGTGTGTATCCTAGCTATGTGA 59.962 45.833 0.00 0.00 0.00 3.58
296 300 5.767269 CTGTGTGTATCCTAGCTATGTGAG 58.233 45.833 0.00 0.00 0.00 3.51
323 327 4.142204 TGTGATTGTGCTCATTGTGTTTGT 60.142 37.500 0.00 0.00 0.00 2.83
324 328 5.067023 TGTGATTGTGCTCATTGTGTTTGTA 59.933 36.000 0.00 0.00 0.00 2.41
325 329 6.151691 GTGATTGTGCTCATTGTGTTTGTAT 58.848 36.000 0.00 0.00 0.00 2.29
326 330 7.040823 TGTGATTGTGCTCATTGTGTTTGTATA 60.041 33.333 0.00 0.00 0.00 1.47
363 367 8.761575 TGCTTCATTTGAGTCAATAAAATTCC 57.238 30.769 6.36 0.00 0.00 3.01
373 377 8.119246 TGAGTCAATAAAATTCCCCCTTTATCA 58.881 33.333 0.00 0.00 29.50 2.15
374 378 8.909423 AGTCAATAAAATTCCCCCTTTATCAA 57.091 30.769 0.00 0.00 29.50 2.57
553 563 7.817641 AGAATTAATTGGTCTCCGTTTCTTTC 58.182 34.615 5.17 0.00 0.00 2.62
945 1073 3.322466 CCTCCAGCGACCAACCCT 61.322 66.667 0.00 0.00 0.00 4.34
1068 1299 2.765807 CATCCCCGACCCTCTGCT 60.766 66.667 0.00 0.00 0.00 4.24
1123 1879 5.503927 CTCCAGAAATCCAGAAATCCAAGA 58.496 41.667 0.00 0.00 0.00 3.02
1125 1881 6.496743 TCCAGAAATCCAGAAATCCAAGAAT 58.503 36.000 0.00 0.00 0.00 2.40
1175 2001 1.472878 CGACGAGAATCAGAAGGTCCA 59.527 52.381 0.00 0.00 33.17 4.02
1269 2095 4.646945 AGCGAATCTGACAGAAGGAATCTA 59.353 41.667 9.70 0.00 36.32 1.98
1293 2119 3.902467 AGAAGGAGAAGGAAAAGGTACGT 59.098 43.478 0.00 0.00 0.00 3.57
1310 2136 1.295357 CGTGCCAAATGTCTGCCGTA 61.295 55.000 0.00 0.00 0.00 4.02
1451 3170 8.358895 TGAATACAGAACATGATCAAAGCAAAA 58.641 29.630 0.00 0.00 0.00 2.44
1633 3758 9.219603 CCTGACAAAATACTCTGAAAGATGTTA 57.780 33.333 0.00 0.00 45.62 2.41
2189 8009 4.882671 AAGTGCTAATGCCACTAAATCG 57.117 40.909 0.00 0.00 38.71 3.34
2540 8613 7.865706 ACTGTTTTATTCAGTGTTTCTCTGT 57.134 32.000 0.00 0.00 43.32 3.41
2619 8692 3.309410 CACCAACATGCAAAACAAGTTCC 59.691 43.478 0.00 0.00 38.09 3.62
3538 9703 0.110486 GGAGGGGCTTGTTTCAGACA 59.890 55.000 0.00 0.00 36.19 3.41
3621 9786 2.304221 TGGGACGGAGGGAGTATATG 57.696 55.000 0.00 0.00 0.00 1.78
3623 9788 2.178325 TGGGACGGAGGGAGTATATGAA 59.822 50.000 0.00 0.00 0.00 2.57
3626 9791 4.322801 GGGACGGAGGGAGTATATGAATTG 60.323 50.000 0.00 0.00 0.00 2.32
3630 9795 4.528596 CGGAGGGAGTATATGAATTGGACT 59.471 45.833 0.00 0.00 0.00 3.85
3631 9796 5.567623 CGGAGGGAGTATATGAATTGGACTG 60.568 48.000 0.00 0.00 0.00 3.51
3632 9797 5.544176 GGAGGGAGTATATGAATTGGACTGA 59.456 44.000 0.00 0.00 0.00 3.41
3633 9798 6.043243 GGAGGGAGTATATGAATTGGACTGAA 59.957 42.308 0.00 0.00 0.00 3.02
3634 9799 6.831976 AGGGAGTATATGAATTGGACTGAAC 58.168 40.000 0.00 0.00 0.00 3.18
3635 9800 6.617371 AGGGAGTATATGAATTGGACTGAACT 59.383 38.462 0.00 0.00 0.00 3.01
3636 9801 6.708054 GGGAGTATATGAATTGGACTGAACTG 59.292 42.308 0.00 0.00 0.00 3.16
3637 9802 7.419057 GGGAGTATATGAATTGGACTGAACTGA 60.419 40.741 0.00 0.00 0.00 3.41
3638 9803 7.655328 GGAGTATATGAATTGGACTGAACTGAG 59.345 40.741 0.00 0.00 0.00 3.35
3640 9805 8.420222 AGTATATGAATTGGACTGAACTGAGAG 58.580 37.037 0.00 0.00 0.00 3.20
3641 9806 4.277515 TGAATTGGACTGAACTGAGAGG 57.722 45.455 0.00 0.00 0.00 3.69
3642 9807 2.777832 ATTGGACTGAACTGAGAGGC 57.222 50.000 0.00 0.00 0.00 4.70
3644 9809 2.604912 TGGACTGAACTGAGAGGCTA 57.395 50.000 0.00 0.00 0.00 3.93
3645 9810 2.889512 TGGACTGAACTGAGAGGCTAA 58.110 47.619 0.00 0.00 0.00 3.09
3646 9811 2.828520 TGGACTGAACTGAGAGGCTAAG 59.171 50.000 0.00 0.00 0.00 2.18
3647 9812 2.167487 GGACTGAACTGAGAGGCTAAGG 59.833 54.545 0.00 0.00 0.00 2.69
3648 9813 1.552792 ACTGAACTGAGAGGCTAAGGC 59.447 52.381 0.00 0.00 37.82 4.35
3649 9814 1.830477 CTGAACTGAGAGGCTAAGGCT 59.170 52.381 0.00 0.00 42.48 4.58
3652 9817 3.449018 TGAACTGAGAGGCTAAGGCTAAG 59.551 47.826 0.00 0.00 38.98 2.18
3653 9818 2.393646 ACTGAGAGGCTAAGGCTAAGG 58.606 52.381 0.00 0.00 38.98 2.69
3654 9819 1.691434 CTGAGAGGCTAAGGCTAAGGG 59.309 57.143 0.00 0.00 38.98 3.95
3655 9820 1.291033 TGAGAGGCTAAGGCTAAGGGA 59.709 52.381 0.00 0.00 38.98 4.20
3656 9821 2.292918 TGAGAGGCTAAGGCTAAGGGAA 60.293 50.000 0.00 0.00 38.98 3.97
3657 9822 2.772515 GAGAGGCTAAGGCTAAGGGAAA 59.227 50.000 0.00 0.00 38.98 3.13
3658 9823 3.392947 GAGAGGCTAAGGCTAAGGGAAAT 59.607 47.826 0.00 0.00 38.98 2.17
3659 9824 3.788708 AGAGGCTAAGGCTAAGGGAAATT 59.211 43.478 0.00 0.00 38.98 1.82
3660 9825 4.230733 AGAGGCTAAGGCTAAGGGAAATTT 59.769 41.667 0.00 0.00 38.98 1.82
3661 9826 4.537751 AGGCTAAGGCTAAGGGAAATTTC 58.462 43.478 9.83 9.83 36.44 2.17
3662 9827 4.230733 AGGCTAAGGCTAAGGGAAATTTCT 59.769 41.667 17.42 1.06 36.44 2.52
3663 9828 4.580995 GGCTAAGGCTAAGGGAAATTTCTC 59.419 45.833 17.42 14.10 38.73 2.87
3664 9829 4.580995 GCTAAGGCTAAGGGAAATTTCTCC 59.419 45.833 14.60 14.55 35.22 3.71
3665 9830 3.283259 AGGCTAAGGGAAATTTCTCCG 57.717 47.619 14.60 5.00 36.21 4.63
3666 9831 2.576648 AGGCTAAGGGAAATTTCTCCGT 59.423 45.455 14.60 14.74 36.21 4.69
3667 9832 3.778629 AGGCTAAGGGAAATTTCTCCGTA 59.221 43.478 14.60 15.03 36.21 4.02
3668 9833 3.875727 GGCTAAGGGAAATTTCTCCGTAC 59.124 47.826 14.60 11.24 36.21 3.67
3669 9834 4.510571 GCTAAGGGAAATTTCTCCGTACA 58.489 43.478 14.60 0.53 36.21 2.90
3670 9835 5.123936 GCTAAGGGAAATTTCTCCGTACAT 58.876 41.667 14.60 0.00 36.21 2.29
3671 9836 5.007724 GCTAAGGGAAATTTCTCCGTACATG 59.992 44.000 14.60 7.79 36.21 3.21
3672 9837 3.279434 AGGGAAATTTCTCCGTACATGC 58.721 45.455 14.60 0.00 36.21 4.06
3673 9838 3.054361 AGGGAAATTTCTCCGTACATGCT 60.054 43.478 14.60 0.00 36.21 3.79
3674 9839 4.163458 AGGGAAATTTCTCCGTACATGCTA 59.837 41.667 14.60 0.00 36.21 3.49
3675 9840 4.272748 GGGAAATTTCTCCGTACATGCTAC 59.727 45.833 17.42 0.00 36.21 3.58
3676 9841 5.116882 GGAAATTTCTCCGTACATGCTACT 58.883 41.667 17.42 0.00 0.00 2.57
3677 9842 5.006746 GGAAATTTCTCCGTACATGCTACTG 59.993 44.000 17.42 0.00 0.00 2.74
3678 9843 3.520290 TTTCTCCGTACATGCTACTGG 57.480 47.619 0.00 2.14 0.00 4.00
3679 9844 0.744874 TCTCCGTACATGCTACTGGC 59.255 55.000 0.00 0.00 42.22 4.85
3680 9845 0.747255 CTCCGTACATGCTACTGGCT 59.253 55.000 0.00 0.00 42.39 4.75
3681 9846 0.459899 TCCGTACATGCTACTGGCTG 59.540 55.000 0.00 0.00 42.39 4.85
3682 9847 0.459899 CCGTACATGCTACTGGCTGA 59.540 55.000 0.00 0.00 42.39 4.26
3683 9848 1.134818 CCGTACATGCTACTGGCTGAA 60.135 52.381 0.00 0.00 42.39 3.02
3684 9849 2.616960 CGTACATGCTACTGGCTGAAA 58.383 47.619 0.00 0.00 42.39 2.69
3685 9850 3.198068 CGTACATGCTACTGGCTGAAAT 58.802 45.455 0.00 0.00 42.39 2.17
3686 9851 4.368315 CGTACATGCTACTGGCTGAAATA 58.632 43.478 0.00 0.00 42.39 1.40
3687 9852 4.209288 CGTACATGCTACTGGCTGAAATAC 59.791 45.833 0.00 0.00 42.39 1.89
3688 9853 4.494091 ACATGCTACTGGCTGAAATACT 57.506 40.909 0.00 0.00 42.39 2.12
3689 9854 5.614324 ACATGCTACTGGCTGAAATACTA 57.386 39.130 0.00 0.00 42.39 1.82
3690 9855 6.179906 ACATGCTACTGGCTGAAATACTAT 57.820 37.500 0.00 0.00 42.39 2.12
3691 9856 6.226787 ACATGCTACTGGCTGAAATACTATC 58.773 40.000 0.00 0.00 42.39 2.08
3692 9857 5.869649 TGCTACTGGCTGAAATACTATCA 57.130 39.130 0.00 0.00 42.39 2.15
3693 9858 6.233905 TGCTACTGGCTGAAATACTATCAA 57.766 37.500 0.00 0.00 42.39 2.57
3694 9859 6.283694 TGCTACTGGCTGAAATACTATCAAG 58.716 40.000 0.00 0.00 42.39 3.02
3695 9860 5.178438 GCTACTGGCTGAAATACTATCAAGC 59.822 44.000 0.00 0.00 38.06 4.01
3696 9861 5.365021 ACTGGCTGAAATACTATCAAGCT 57.635 39.130 0.00 0.00 0.00 3.74
3697 9862 5.749462 ACTGGCTGAAATACTATCAAGCTT 58.251 37.500 0.00 0.00 0.00 3.74
3698 9863 6.889198 ACTGGCTGAAATACTATCAAGCTTA 58.111 36.000 0.00 0.00 0.00 3.09
3699 9864 6.763610 ACTGGCTGAAATACTATCAAGCTTAC 59.236 38.462 0.00 0.00 0.00 2.34
3700 9865 5.753438 TGGCTGAAATACTATCAAGCTTACG 59.247 40.000 0.00 0.00 0.00 3.18
3701 9866 5.983720 GGCTGAAATACTATCAAGCTTACGA 59.016 40.000 0.00 0.00 0.00 3.43
3702 9867 6.647067 GGCTGAAATACTATCAAGCTTACGAT 59.353 38.462 0.00 1.09 0.00 3.73
3703 9868 7.813148 GGCTGAAATACTATCAAGCTTACGATA 59.187 37.037 0.00 2.38 0.00 2.92
3704 9869 9.193133 GCTGAAATACTATCAAGCTTACGATAA 57.807 33.333 0.00 0.00 0.00 1.75
3708 9873 7.972623 ATACTATCAAGCTTACGATAATCGC 57.027 36.000 0.00 0.00 45.12 4.58
3709 9874 6.015027 ACTATCAAGCTTACGATAATCGCT 57.985 37.500 0.00 0.00 45.12 4.93
3710 9875 6.448006 ACTATCAAGCTTACGATAATCGCTT 58.552 36.000 0.00 0.00 45.12 4.68
3711 9876 6.924060 ACTATCAAGCTTACGATAATCGCTTT 59.076 34.615 0.00 0.00 45.12 3.51
3712 9877 8.080417 ACTATCAAGCTTACGATAATCGCTTTA 58.920 33.333 0.00 0.00 45.12 1.85
3713 9878 6.749216 TCAAGCTTACGATAATCGCTTTAG 57.251 37.500 0.00 0.00 45.12 1.85
3714 9879 5.690409 TCAAGCTTACGATAATCGCTTTAGG 59.310 40.000 0.00 0.00 45.12 2.69
3715 9880 4.557205 AGCTTACGATAATCGCTTTAGGG 58.443 43.478 0.00 0.00 45.12 3.53
3716 9881 3.123116 GCTTACGATAATCGCTTTAGGGC 59.877 47.826 0.00 0.00 45.12 5.19
3717 9882 4.557205 CTTACGATAATCGCTTTAGGGCT 58.443 43.478 0.00 0.00 45.12 5.19
3718 9883 2.755650 ACGATAATCGCTTTAGGGCTG 58.244 47.619 0.00 0.00 45.12 4.85
3719 9884 1.461127 CGATAATCGCTTTAGGGCTGC 59.539 52.381 0.00 0.00 31.14 5.25
3720 9885 2.494059 GATAATCGCTTTAGGGCTGCA 58.506 47.619 0.50 0.00 0.00 4.41
3721 9886 1.663695 TAATCGCTTTAGGGCTGCAC 58.336 50.000 0.50 0.00 0.00 4.57
3722 9887 1.369091 AATCGCTTTAGGGCTGCACG 61.369 55.000 0.50 0.00 0.00 5.34
3723 9888 2.238847 ATCGCTTTAGGGCTGCACGA 62.239 55.000 0.50 0.00 0.00 4.35
3724 9889 2.456119 CGCTTTAGGGCTGCACGAG 61.456 63.158 0.50 0.03 0.00 4.18
3725 9890 1.376037 GCTTTAGGGCTGCACGAGT 60.376 57.895 0.50 0.00 0.00 4.18
3726 9891 0.955919 GCTTTAGGGCTGCACGAGTT 60.956 55.000 0.50 0.00 0.00 3.01
3727 9892 1.674817 GCTTTAGGGCTGCACGAGTTA 60.675 52.381 0.50 0.00 0.00 2.24
3728 9893 2.906354 CTTTAGGGCTGCACGAGTTAT 58.094 47.619 0.50 0.00 0.00 1.89
3729 9894 3.270877 CTTTAGGGCTGCACGAGTTATT 58.729 45.455 0.50 0.00 0.00 1.40
3730 9895 3.343941 TTAGGGCTGCACGAGTTATTT 57.656 42.857 0.50 0.00 0.00 1.40
3731 9896 2.200373 AGGGCTGCACGAGTTATTTT 57.800 45.000 0.50 0.00 0.00 1.82
3732 9897 2.514803 AGGGCTGCACGAGTTATTTTT 58.485 42.857 0.50 0.00 0.00 1.94
3733 9898 2.228822 AGGGCTGCACGAGTTATTTTTG 59.771 45.455 0.50 0.00 0.00 2.44
3734 9899 2.595386 GGCTGCACGAGTTATTTTTGG 58.405 47.619 0.50 0.00 0.00 3.28
3735 9900 1.985684 GCTGCACGAGTTATTTTTGGC 59.014 47.619 0.00 0.00 0.00 4.52
3736 9901 2.606795 GCTGCACGAGTTATTTTTGGCA 60.607 45.455 0.00 0.00 0.00 4.92
3737 9902 3.236816 CTGCACGAGTTATTTTTGGCAG 58.763 45.455 0.00 0.00 41.08 4.85
3738 9903 1.985684 GCACGAGTTATTTTTGGCAGC 59.014 47.619 0.00 0.00 0.00 5.25
3739 9904 2.606795 GCACGAGTTATTTTTGGCAGCA 60.607 45.455 0.00 0.00 0.00 4.41
3740 9905 2.979813 CACGAGTTATTTTTGGCAGCAC 59.020 45.455 0.00 0.00 0.00 4.40
3741 9906 2.884639 ACGAGTTATTTTTGGCAGCACT 59.115 40.909 0.00 0.00 0.00 4.40
3742 9907 3.317993 ACGAGTTATTTTTGGCAGCACTT 59.682 39.130 0.00 0.00 0.00 3.16
3743 9908 4.202111 ACGAGTTATTTTTGGCAGCACTTT 60.202 37.500 0.00 0.00 0.00 2.66
3744 9909 4.148696 CGAGTTATTTTTGGCAGCACTTTG 59.851 41.667 0.00 0.00 0.00 2.77
3745 9910 5.275067 AGTTATTTTTGGCAGCACTTTGA 57.725 34.783 0.00 0.00 0.00 2.69
3749 9914 2.512485 TTTGGCAGCACTTTGATGTG 57.488 45.000 0.00 0.00 35.94 3.21
3753 9918 2.553602 TGGCAGCACTTTGATGTGTTAG 59.446 45.455 0.00 0.00 35.94 2.34
3754 9919 2.813754 GGCAGCACTTTGATGTGTTAGA 59.186 45.455 0.00 0.00 35.94 2.10
3758 9923 4.751600 CAGCACTTTGATGTGTTAGACTCA 59.248 41.667 0.00 0.00 39.89 3.41
3763 9928 6.703607 CACTTTGATGTGTTAGACTCAAGAGT 59.296 38.462 1.68 1.68 37.48 3.24
3774 9939 2.964209 ACTCAAGAGTCAAGACCCTGA 58.036 47.619 0.00 0.00 36.92 3.86
3775 9940 3.309296 ACTCAAGAGTCAAGACCCTGAA 58.691 45.455 0.00 0.00 36.92 3.02
3776 9941 3.323403 ACTCAAGAGTCAAGACCCTGAAG 59.677 47.826 0.00 0.00 36.92 3.02
3777 9942 3.309296 TCAAGAGTCAAGACCCTGAAGT 58.691 45.455 0.00 0.00 0.00 3.01
3778 9943 3.711704 TCAAGAGTCAAGACCCTGAAGTT 59.288 43.478 0.00 0.00 0.00 2.66
3779 9944 4.061596 CAAGAGTCAAGACCCTGAAGTTC 58.938 47.826 0.00 0.00 0.00 3.01
3781 9946 3.711704 AGAGTCAAGACCCTGAAGTTCAA 59.288 43.478 7.06 0.00 0.00 2.69
3782 9947 4.164221 AGAGTCAAGACCCTGAAGTTCAAA 59.836 41.667 7.06 0.00 0.00 2.69
3783 9948 4.855340 AGTCAAGACCCTGAAGTTCAAAA 58.145 39.130 7.06 0.00 0.00 2.44
3784 9949 5.449553 AGTCAAGACCCTGAAGTTCAAAAT 58.550 37.500 7.06 0.00 0.00 1.82
3786 9951 7.234355 AGTCAAGACCCTGAAGTTCAAAATAT 58.766 34.615 7.06 0.00 0.00 1.28
3787 9952 7.725844 AGTCAAGACCCTGAAGTTCAAAATATT 59.274 33.333 7.06 0.00 0.00 1.28
3788 9953 8.360390 GTCAAGACCCTGAAGTTCAAAATATTT 58.640 33.333 7.06 0.00 0.00 1.40
3789 9954 8.576442 TCAAGACCCTGAAGTTCAAAATATTTC 58.424 33.333 7.06 0.00 0.00 2.17
3790 9955 8.579863 CAAGACCCTGAAGTTCAAAATATTTCT 58.420 33.333 7.06 0.00 0.00 2.52
3791 9956 9.807921 AAGACCCTGAAGTTCAAAATATTTCTA 57.192 29.630 7.06 0.00 0.00 2.10
3792 9957 9.454859 AGACCCTGAAGTTCAAAATATTTCTAG 57.545 33.333 7.06 0.00 0.00 2.43
3793 9958 8.056407 ACCCTGAAGTTCAAAATATTTCTAGC 57.944 34.615 7.06 0.00 0.00 3.42
3794 9959 7.122799 ACCCTGAAGTTCAAAATATTTCTAGCC 59.877 37.037 7.06 0.00 0.00 3.93
3795 9960 7.122650 CCCTGAAGTTCAAAATATTTCTAGCCA 59.877 37.037 7.06 0.00 0.00 4.75
3796 9961 8.689972 CCTGAAGTTCAAAATATTTCTAGCCAT 58.310 33.333 7.06 0.00 0.00 4.40
3799 9964 8.707938 AAGTTCAAAATATTTCTAGCCATTGC 57.292 30.769 0.10 0.00 37.95 3.56
3810 9975 3.077617 GCCATTGCTCTCCAGTCTC 57.922 57.895 0.00 0.00 33.53 3.36
3811 9976 0.463474 GCCATTGCTCTCCAGTCTCC 60.463 60.000 0.00 0.00 33.53 3.71
3812 9977 0.907486 CCATTGCTCTCCAGTCTCCA 59.093 55.000 0.00 0.00 0.00 3.86
3813 9978 1.134461 CCATTGCTCTCCAGTCTCCAG 60.134 57.143 0.00 0.00 0.00 3.86
3814 9979 1.829849 CATTGCTCTCCAGTCTCCAGA 59.170 52.381 0.00 0.00 0.00 3.86
3815 9980 1.554836 TTGCTCTCCAGTCTCCAGAG 58.445 55.000 1.45 1.45 37.35 3.35
3817 9982 3.594453 CTCTCCAGTCTCCAGAGCT 57.406 57.895 0.00 0.00 0.00 4.09
3819 9984 2.178580 CTCTCCAGTCTCCAGAGCTTT 58.821 52.381 0.00 0.00 0.00 3.51
3820 9985 3.360867 CTCTCCAGTCTCCAGAGCTTTA 58.639 50.000 0.00 0.00 0.00 1.85
3821 9986 3.360867 TCTCCAGTCTCCAGAGCTTTAG 58.639 50.000 0.00 0.00 0.00 1.85
3823 9988 1.134551 CCAGTCTCCAGAGCTTTAGCC 60.135 57.143 0.00 0.00 43.38 3.93
3824 9989 1.552337 CAGTCTCCAGAGCTTTAGCCA 59.448 52.381 0.00 0.00 43.38 4.75
3825 9990 2.027745 CAGTCTCCAGAGCTTTAGCCAA 60.028 50.000 0.00 0.00 43.38 4.52
3828 9993 2.234908 TCTCCAGAGCTTTAGCCAAGTC 59.765 50.000 0.00 0.00 43.38 3.01
3829 9994 1.977854 TCCAGAGCTTTAGCCAAGTCA 59.022 47.619 0.00 0.00 43.38 3.41
3830 9995 2.371841 TCCAGAGCTTTAGCCAAGTCAA 59.628 45.455 0.00 0.00 43.38 3.18
3831 9996 2.746362 CCAGAGCTTTAGCCAAGTCAAG 59.254 50.000 0.00 0.00 43.38 3.02
3833 9998 2.154462 GAGCTTTAGCCAAGTCAAGCA 58.846 47.619 5.60 0.00 43.48 3.91
3835 10000 2.154462 GCTTTAGCCAAGTCAAGCAGA 58.846 47.619 0.00 0.00 41.16 4.26
3836 10001 2.751806 GCTTTAGCCAAGTCAAGCAGAT 59.248 45.455 0.00 0.00 41.16 2.90
3838 10003 4.321527 GCTTTAGCCAAGTCAAGCAGATTT 60.322 41.667 0.00 0.00 41.16 2.17
3839 10004 5.776744 CTTTAGCCAAGTCAAGCAGATTTT 58.223 37.500 0.00 0.00 0.00 1.82
3840 10005 3.655276 AGCCAAGTCAAGCAGATTTTG 57.345 42.857 0.00 0.00 0.00 2.44
3841 10006 2.961062 AGCCAAGTCAAGCAGATTTTGT 59.039 40.909 0.00 0.00 0.00 2.83
3842 10007 4.144297 AGCCAAGTCAAGCAGATTTTGTA 58.856 39.130 0.00 0.00 0.00 2.41
3843 10008 4.217118 AGCCAAGTCAAGCAGATTTTGTAG 59.783 41.667 0.00 0.00 0.00 2.74
3846 10011 5.507817 CCAAGTCAAGCAGATTTTGTAGCAA 60.508 40.000 0.00 0.00 0.00 3.91
3847 10012 5.972107 AGTCAAGCAGATTTTGTAGCAAT 57.028 34.783 0.00 0.00 0.00 3.56
3849 10014 6.154445 AGTCAAGCAGATTTTGTAGCAATTG 58.846 36.000 0.00 0.00 0.00 2.32
3850 10015 4.925054 TCAAGCAGATTTTGTAGCAATTGC 59.075 37.500 23.05 23.05 42.49 3.56
3851 10016 4.524316 AGCAGATTTTGTAGCAATTGCA 57.476 36.364 30.89 14.94 45.16 4.08
3852 10017 5.080969 AGCAGATTTTGTAGCAATTGCAT 57.919 34.783 30.89 18.26 45.16 3.96
3853 10018 5.484715 AGCAGATTTTGTAGCAATTGCATT 58.515 33.333 30.89 14.88 45.16 3.56
3862 10027 1.712401 GCAATTGCATTTGCGAAGGA 58.288 45.000 25.40 0.00 45.83 3.36
3864 10029 2.927871 GCAATTGCATTTGCGAAGGAGT 60.928 45.455 25.40 0.00 45.83 3.85
3866 10031 4.484236 CAATTGCATTTGCGAAGGAGTAA 58.516 39.130 8.29 0.00 45.83 2.24
3867 10032 4.989279 ATTGCATTTGCGAAGGAGTAAT 57.011 36.364 1.65 0.00 45.83 1.89
3868 10033 3.763097 TGCATTTGCGAAGGAGTAATG 57.237 42.857 1.65 0.00 45.83 1.90
3869 10034 2.423185 TGCATTTGCGAAGGAGTAATGG 59.577 45.455 1.65 0.00 45.83 3.16
3870 10035 2.423538 GCATTTGCGAAGGAGTAATGGT 59.576 45.455 1.65 0.00 0.00 3.55
3871 10036 3.119495 GCATTTGCGAAGGAGTAATGGTT 60.119 43.478 1.65 0.00 0.00 3.67
3872 10037 4.618227 GCATTTGCGAAGGAGTAATGGTTT 60.618 41.667 1.65 0.00 0.00 3.27
3873 10038 5.469479 CATTTGCGAAGGAGTAATGGTTTT 58.531 37.500 0.00 0.00 0.00 2.43
3875 10040 6.636562 TTTGCGAAGGAGTAATGGTTTTAA 57.363 33.333 0.00 0.00 0.00 1.52
3876 10041 6.827586 TTGCGAAGGAGTAATGGTTTTAAT 57.172 33.333 0.00 0.00 0.00 1.40
3877 10042 6.827586 TGCGAAGGAGTAATGGTTTTAATT 57.172 33.333 0.00 0.00 0.00 1.40
3878 10043 6.848451 TGCGAAGGAGTAATGGTTTTAATTC 58.152 36.000 0.00 0.00 0.00 2.17
3879 10044 6.431543 TGCGAAGGAGTAATGGTTTTAATTCA 59.568 34.615 0.00 0.00 0.00 2.57
3880 10045 7.040340 TGCGAAGGAGTAATGGTTTTAATTCAA 60.040 33.333 0.00 0.00 0.00 2.69
3881 10046 7.272731 GCGAAGGAGTAATGGTTTTAATTCAAC 59.727 37.037 0.00 0.00 0.00 3.18
3882 10047 8.293867 CGAAGGAGTAATGGTTTTAATTCAACA 58.706 33.333 3.53 0.00 0.00 3.33
3883 10048 9.974980 GAAGGAGTAATGGTTTTAATTCAACAA 57.025 29.630 3.53 0.00 0.00 2.83
3950 10116 4.112716 TGCACATTCACCTTGCATAATG 57.887 40.909 0.00 0.00 41.29 1.90
3954 10120 6.096564 TGCACATTCACCTTGCATAATGAATA 59.903 34.615 15.51 2.97 41.29 1.75
4036 10211 8.695456 AGGTAACCCTATGATTTTATTTGCTTG 58.305 33.333 0.00 0.00 40.19 4.01
4040 10215 8.007405 ACCCTATGATTTTATTTGCTTGTACC 57.993 34.615 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 56 3.367087 GCTGAAGAAATGAACATGCAGCT 60.367 43.478 0.00 0.00 42.91 4.24
53 57 2.921754 GCTGAAGAAATGAACATGCAGC 59.078 45.455 0.00 0.00 40.34 5.25
54 58 3.168963 CGCTGAAGAAATGAACATGCAG 58.831 45.455 0.00 0.00 0.00 4.41
96 100 4.320421 CGCACAATCCAGAACTGAAATGAA 60.320 41.667 3.19 0.00 0.00 2.57
98 102 3.495193 CGCACAATCCAGAACTGAAATG 58.505 45.455 3.19 2.15 0.00 2.32
99 103 2.095059 GCGCACAATCCAGAACTGAAAT 60.095 45.455 0.30 0.00 0.00 2.17
147 151 3.617540 ACAGCGATCGATGAACTAGAG 57.382 47.619 37.13 10.87 35.26 2.43
149 153 4.562789 TGAAAACAGCGATCGATGAACTAG 59.437 41.667 37.13 12.41 35.26 2.57
156 160 2.540515 ACGATGAAAACAGCGATCGAT 58.459 42.857 21.57 10.64 40.06 3.59
233 237 7.412455 CGCACACACAGATAAATACACATACAA 60.412 37.037 0.00 0.00 0.00 2.41
235 239 6.035650 ACGCACACACAGATAAATACACATAC 59.964 38.462 0.00 0.00 0.00 2.39
236 240 6.035542 CACGCACACACAGATAAATACACATA 59.964 38.462 0.00 0.00 0.00 2.29
237 241 4.935205 ACGCACACACAGATAAATACACAT 59.065 37.500 0.00 0.00 0.00 3.21
238 242 4.151512 CACGCACACACAGATAAATACACA 59.848 41.667 0.00 0.00 0.00 3.72
239 243 4.151689 ACACGCACACACAGATAAATACAC 59.848 41.667 0.00 0.00 0.00 2.90
240 244 4.151512 CACACGCACACACAGATAAATACA 59.848 41.667 0.00 0.00 0.00 2.29
241 245 4.151689 ACACACGCACACACAGATAAATAC 59.848 41.667 0.00 0.00 0.00 1.89
242 246 4.311606 ACACACGCACACACAGATAAATA 58.688 39.130 0.00 0.00 0.00 1.40
243 247 3.138304 ACACACGCACACACAGATAAAT 58.862 40.909 0.00 0.00 0.00 1.40
244 248 2.556257 ACACACGCACACACAGATAAA 58.444 42.857 0.00 0.00 0.00 1.40
245 249 2.232756 ACACACGCACACACAGATAA 57.767 45.000 0.00 0.00 0.00 1.75
246 250 1.864082 CAACACACGCACACACAGATA 59.136 47.619 0.00 0.00 0.00 1.98
247 251 0.657312 CAACACACGCACACACAGAT 59.343 50.000 0.00 0.00 0.00 2.90
248 252 1.365368 CCAACACACGCACACACAGA 61.365 55.000 0.00 0.00 0.00 3.41
249 253 1.062365 CCAACACACGCACACACAG 59.938 57.895 0.00 0.00 0.00 3.66
250 254 1.672682 ACCAACACACGCACACACA 60.673 52.632 0.00 0.00 0.00 3.72
251 255 1.226267 CACCAACACACGCACACAC 60.226 57.895 0.00 0.00 0.00 3.82
294 298 1.896220 TGAGCACAATCACAACCCTC 58.104 50.000 0.00 0.00 0.00 4.30
295 299 2.559668 CAATGAGCACAATCACAACCCT 59.440 45.455 0.00 0.00 30.46 4.34
296 300 2.297033 ACAATGAGCACAATCACAACCC 59.703 45.455 0.00 0.00 30.46 4.11
324 328 9.976511 CTCAAATGAAGCATCAACCAAATATAT 57.023 29.630 0.00 0.00 39.49 0.86
325 329 8.970020 ACTCAAATGAAGCATCAACCAAATATA 58.030 29.630 0.00 0.00 39.49 0.86
326 330 7.844009 ACTCAAATGAAGCATCAACCAAATAT 58.156 30.769 0.00 0.00 39.49 1.28
381 385 3.657398 TGCAAGGAAGATGGATCACAT 57.343 42.857 0.00 0.00 44.18 3.21
553 563 2.203470 GGGACGGAGGGAGTATCTAG 57.797 60.000 0.00 0.00 33.73 2.43
609 620 4.132336 GTTTGGTCGGGAGAAACTAAAGT 58.868 43.478 0.00 0.00 42.89 2.66
883 894 2.060980 CCTCGGTTCCCTCCTCCTG 61.061 68.421 0.00 0.00 0.00 3.86
910 925 1.751927 GCTGTGGAGATTGGCAGGG 60.752 63.158 0.00 0.00 0.00 4.45
1052 1283 2.041265 AAGCAGAGGGTCGGGGAT 59.959 61.111 0.00 0.00 0.00 3.85
1059 1290 4.021925 GGCGACCAAGCAGAGGGT 62.022 66.667 0.00 0.00 40.96 4.34
1068 1299 4.308458 CACGTCCCTGGCGACCAA 62.308 66.667 8.97 0.00 30.80 3.67
1123 1879 1.604755 CGAGTGCCTACGAGCTAGATT 59.395 52.381 0.00 0.00 0.00 2.40
1125 1881 1.437772 GCGAGTGCCTACGAGCTAGA 61.438 60.000 0.00 0.00 33.46 2.43
1175 2001 1.065199 TCTTGCAATCCAGCTCCGAAT 60.065 47.619 0.00 0.00 34.99 3.34
1269 2095 4.221041 CGTACCTTTTCCTTCTCCTTCTCT 59.779 45.833 0.00 0.00 0.00 3.10
1293 2119 1.610363 TTTACGGCAGACATTTGGCA 58.390 45.000 0.00 0.00 43.26 4.92
1451 3170 5.698104 TCCAATGTTGCCATCTTGAGATAT 58.302 37.500 0.00 0.00 32.63 1.63
1633 3758 7.422465 AGCTAGTTCAGATCAAAAGATCTCT 57.578 36.000 5.08 3.43 39.69 3.10
2189 8009 2.185004 TAAGCCAGGCAGAACAAGAC 57.815 50.000 15.80 0.00 0.00 3.01
2442 8515 8.922931 TCATTACATAAGGCACATATTCACAT 57.077 30.769 0.00 0.00 0.00 3.21
2619 8692 6.925165 AGCAAGAAACACATATTTTTGGTCTG 59.075 34.615 0.00 0.00 0.00 3.51
3621 9786 3.006247 GCCTCTCAGTTCAGTCCAATTC 58.994 50.000 0.00 0.00 0.00 2.17
3623 9788 2.264455 AGCCTCTCAGTTCAGTCCAAT 58.736 47.619 0.00 0.00 0.00 3.16
3626 9791 2.167487 CCTTAGCCTCTCAGTTCAGTCC 59.833 54.545 0.00 0.00 0.00 3.85
3630 9795 1.944177 AGCCTTAGCCTCTCAGTTCA 58.056 50.000 0.00 0.00 41.25 3.18
3631 9796 3.181470 CCTTAGCCTTAGCCTCTCAGTTC 60.181 52.174 0.00 0.00 41.25 3.01
3632 9797 2.769095 CCTTAGCCTTAGCCTCTCAGTT 59.231 50.000 0.00 0.00 41.25 3.16
3633 9798 2.393646 CCTTAGCCTTAGCCTCTCAGT 58.606 52.381 0.00 0.00 41.25 3.41
3634 9799 1.691434 CCCTTAGCCTTAGCCTCTCAG 59.309 57.143 0.00 0.00 41.25 3.35
3635 9800 1.291033 TCCCTTAGCCTTAGCCTCTCA 59.709 52.381 0.00 0.00 41.25 3.27
3636 9801 2.089600 TCCCTTAGCCTTAGCCTCTC 57.910 55.000 0.00 0.00 41.25 3.20
3637 9802 2.570386 TTCCCTTAGCCTTAGCCTCT 57.430 50.000 0.00 0.00 41.25 3.69
3638 9803 3.866703 ATTTCCCTTAGCCTTAGCCTC 57.133 47.619 0.00 0.00 41.25 4.70
3640 9805 4.537751 AGAAATTTCCCTTAGCCTTAGCC 58.462 43.478 14.61 0.00 41.25 3.93
3641 9806 4.580995 GGAGAAATTTCCCTTAGCCTTAGC 59.419 45.833 14.61 0.00 40.32 3.09
3642 9807 4.816925 CGGAGAAATTTCCCTTAGCCTTAG 59.183 45.833 14.61 0.00 33.46 2.18
3644 9809 3.010250 ACGGAGAAATTTCCCTTAGCCTT 59.990 43.478 14.61 0.00 33.46 4.35
3645 9810 2.576648 ACGGAGAAATTTCCCTTAGCCT 59.423 45.455 14.61 0.00 33.46 4.58
3646 9811 3.000684 ACGGAGAAATTTCCCTTAGCC 57.999 47.619 14.61 6.23 33.46 3.93
3647 9812 4.510571 TGTACGGAGAAATTTCCCTTAGC 58.489 43.478 14.61 8.70 33.46 3.09
3648 9813 5.007724 GCATGTACGGAGAAATTTCCCTTAG 59.992 44.000 14.61 5.12 33.46 2.18
3649 9814 4.879545 GCATGTACGGAGAAATTTCCCTTA 59.120 41.667 14.61 10.30 33.46 2.69
3652 9817 3.279434 AGCATGTACGGAGAAATTTCCC 58.721 45.455 14.61 13.68 33.46 3.97
3653 9818 5.006746 CAGTAGCATGTACGGAGAAATTTCC 59.993 44.000 14.61 6.37 0.00 3.13
3654 9819 5.006746 CCAGTAGCATGTACGGAGAAATTTC 59.993 44.000 10.33 10.33 0.00 2.17
3655 9820 4.876107 CCAGTAGCATGTACGGAGAAATTT 59.124 41.667 0.00 0.00 0.00 1.82
3656 9821 4.442706 CCAGTAGCATGTACGGAGAAATT 58.557 43.478 0.00 0.00 0.00 1.82
3657 9822 3.741388 GCCAGTAGCATGTACGGAGAAAT 60.741 47.826 14.24 0.00 42.97 2.17
3658 9823 2.418197 GCCAGTAGCATGTACGGAGAAA 60.418 50.000 14.24 0.00 42.97 2.52
3659 9824 1.136305 GCCAGTAGCATGTACGGAGAA 59.864 52.381 14.24 0.00 42.97 2.87
3660 9825 0.744874 GCCAGTAGCATGTACGGAGA 59.255 55.000 14.24 0.00 42.97 3.71
3661 9826 3.274393 GCCAGTAGCATGTACGGAG 57.726 57.895 14.24 5.24 42.97 4.63
3671 9836 5.178438 GCTTGATAGTATTTCAGCCAGTAGC 59.822 44.000 0.00 0.00 44.25 3.58
3672 9837 6.520272 AGCTTGATAGTATTTCAGCCAGTAG 58.480 40.000 5.84 0.00 0.00 2.57
3673 9838 6.485830 AGCTTGATAGTATTTCAGCCAGTA 57.514 37.500 5.84 0.00 0.00 2.74
3674 9839 5.365021 AGCTTGATAGTATTTCAGCCAGT 57.635 39.130 5.84 0.00 0.00 4.00
3675 9840 6.074088 CGTAAGCTTGATAGTATTTCAGCCAG 60.074 42.308 9.86 0.00 0.00 4.85
3676 9841 5.753438 CGTAAGCTTGATAGTATTTCAGCCA 59.247 40.000 9.86 0.00 0.00 4.75
3677 9842 5.983720 TCGTAAGCTTGATAGTATTTCAGCC 59.016 40.000 9.86 0.00 37.18 4.85
3678 9843 7.644986 ATCGTAAGCTTGATAGTATTTCAGC 57.355 36.000 9.86 2.40 37.18 4.26
3682 9847 8.861101 GCGATTATCGTAAGCTTGATAGTATTT 58.139 33.333 16.18 0.00 42.81 1.40
3683 9848 8.244802 AGCGATTATCGTAAGCTTGATAGTATT 58.755 33.333 16.18 0.00 42.81 1.89
3684 9849 7.763356 AGCGATTATCGTAAGCTTGATAGTAT 58.237 34.615 16.18 0.42 42.81 2.12
3685 9850 7.142306 AGCGATTATCGTAAGCTTGATAGTA 57.858 36.000 16.18 0.00 42.81 1.82
3686 9851 6.015027 AGCGATTATCGTAAGCTTGATAGT 57.985 37.500 16.18 5.41 42.81 2.12
3687 9852 6.936222 AAGCGATTATCGTAAGCTTGATAG 57.064 37.500 16.18 0.00 45.12 2.08
3688 9853 7.541091 CCTAAAGCGATTATCGTAAGCTTGATA 59.459 37.037 16.18 5.81 45.97 2.15
3689 9854 6.366332 CCTAAAGCGATTATCGTAAGCTTGAT 59.634 38.462 16.18 6.87 45.97 2.57
3690 9855 5.690409 CCTAAAGCGATTATCGTAAGCTTGA 59.310 40.000 16.18 0.00 45.97 3.02
3691 9856 5.107453 CCCTAAAGCGATTATCGTAAGCTTG 60.107 44.000 16.18 0.00 45.97 4.01
3693 9858 4.557205 CCCTAAAGCGATTATCGTAAGCT 58.443 43.478 16.18 1.56 42.81 3.74
3694 9859 3.123116 GCCCTAAAGCGATTATCGTAAGC 59.877 47.826 16.18 6.36 42.81 3.09
3695 9860 4.386049 CAGCCCTAAAGCGATTATCGTAAG 59.614 45.833 16.18 8.21 42.81 2.34
3696 9861 4.304110 CAGCCCTAAAGCGATTATCGTAA 58.696 43.478 16.18 0.00 42.81 3.18
3697 9862 3.859627 GCAGCCCTAAAGCGATTATCGTA 60.860 47.826 16.18 0.19 42.81 3.43
3698 9863 2.755650 CAGCCCTAAAGCGATTATCGT 58.244 47.619 16.18 0.00 42.81 3.73
3699 9864 1.461127 GCAGCCCTAAAGCGATTATCG 59.539 52.381 10.56 10.56 43.89 2.92
3700 9865 2.224314 GTGCAGCCCTAAAGCGATTATC 59.776 50.000 0.00 0.00 38.01 1.75
3701 9866 2.222027 GTGCAGCCCTAAAGCGATTAT 58.778 47.619 0.00 0.00 38.01 1.28
3702 9867 1.663695 GTGCAGCCCTAAAGCGATTA 58.336 50.000 0.00 0.00 38.01 1.75
3703 9868 1.369091 CGTGCAGCCCTAAAGCGATT 61.369 55.000 0.00 0.00 38.01 3.34
3704 9869 1.815421 CGTGCAGCCCTAAAGCGAT 60.815 57.895 0.00 0.00 38.01 4.58
3705 9870 2.434185 CGTGCAGCCCTAAAGCGA 60.434 61.111 0.00 0.00 38.01 4.93
3706 9871 2.434185 TCGTGCAGCCCTAAAGCG 60.434 61.111 0.00 0.00 38.01 4.68
3707 9872 0.955919 AACTCGTGCAGCCCTAAAGC 60.956 55.000 0.00 0.00 0.00 3.51
3708 9873 2.380084 TAACTCGTGCAGCCCTAAAG 57.620 50.000 0.00 0.00 0.00 1.85
3709 9874 3.343941 AATAACTCGTGCAGCCCTAAA 57.656 42.857 0.00 0.00 0.00 1.85
3710 9875 3.343941 AAATAACTCGTGCAGCCCTAA 57.656 42.857 0.00 0.00 0.00 2.69
3711 9876 3.343941 AAAATAACTCGTGCAGCCCTA 57.656 42.857 0.00 0.00 0.00 3.53
3712 9877 2.200373 AAAATAACTCGTGCAGCCCT 57.800 45.000 0.00 0.00 0.00 5.19
3713 9878 2.595386 CAAAAATAACTCGTGCAGCCC 58.405 47.619 0.00 0.00 0.00 5.19
3714 9879 2.595386 CCAAAAATAACTCGTGCAGCC 58.405 47.619 0.00 0.00 0.00 4.85
3715 9880 1.985684 GCCAAAAATAACTCGTGCAGC 59.014 47.619 0.00 0.00 0.00 5.25
3716 9881 3.236816 CTGCCAAAAATAACTCGTGCAG 58.763 45.455 0.00 0.00 38.98 4.41
3717 9882 2.606795 GCTGCCAAAAATAACTCGTGCA 60.607 45.455 0.00 0.00 0.00 4.57
3718 9883 1.985684 GCTGCCAAAAATAACTCGTGC 59.014 47.619 0.00 0.00 0.00 5.34
3719 9884 2.979813 GTGCTGCCAAAAATAACTCGTG 59.020 45.455 0.00 0.00 0.00 4.35
3720 9885 2.884639 AGTGCTGCCAAAAATAACTCGT 59.115 40.909 0.00 0.00 0.00 4.18
3721 9886 3.559238 AGTGCTGCCAAAAATAACTCG 57.441 42.857 0.00 0.00 0.00 4.18
3722 9887 5.288804 TCAAAGTGCTGCCAAAAATAACTC 58.711 37.500 0.00 0.00 0.00 3.01
3723 9888 5.275067 TCAAAGTGCTGCCAAAAATAACT 57.725 34.783 0.00 0.00 0.00 2.24
3724 9889 5.466393 ACATCAAAGTGCTGCCAAAAATAAC 59.534 36.000 0.00 0.00 0.00 1.89
3725 9890 5.466058 CACATCAAAGTGCTGCCAAAAATAA 59.534 36.000 0.00 0.00 32.04 1.40
3726 9891 4.989797 CACATCAAAGTGCTGCCAAAAATA 59.010 37.500 0.00 0.00 32.04 1.40
3727 9892 3.810941 CACATCAAAGTGCTGCCAAAAAT 59.189 39.130 0.00 0.00 32.04 1.82
3728 9893 3.196463 CACATCAAAGTGCTGCCAAAAA 58.804 40.909 0.00 0.00 32.04 1.94
3729 9894 2.168106 ACACATCAAAGTGCTGCCAAAA 59.832 40.909 0.00 0.00 43.23 2.44
3730 9895 1.755959 ACACATCAAAGTGCTGCCAAA 59.244 42.857 0.00 0.00 43.23 3.28
3731 9896 1.401761 ACACATCAAAGTGCTGCCAA 58.598 45.000 0.00 0.00 43.23 4.52
3732 9897 1.401761 AACACATCAAAGTGCTGCCA 58.598 45.000 0.00 0.00 43.23 4.92
3733 9898 2.813754 TCTAACACATCAAAGTGCTGCC 59.186 45.455 0.00 0.00 43.23 4.85
3734 9899 3.499918 AGTCTAACACATCAAAGTGCTGC 59.500 43.478 0.00 0.00 43.23 5.25
3735 9900 4.751600 TGAGTCTAACACATCAAAGTGCTG 59.248 41.667 0.00 0.00 43.23 4.41
3736 9901 4.960938 TGAGTCTAACACATCAAAGTGCT 58.039 39.130 0.00 0.00 43.23 4.40
3737 9902 5.466728 TCTTGAGTCTAACACATCAAAGTGC 59.533 40.000 0.00 0.00 43.23 4.40
3738 9903 6.703607 ACTCTTGAGTCTAACACATCAAAGTG 59.296 38.462 0.00 0.00 44.93 3.16
3739 9904 6.821388 ACTCTTGAGTCTAACACATCAAAGT 58.179 36.000 0.00 0.00 31.70 2.66
3740 9905 6.925718 TGACTCTTGAGTCTAACACATCAAAG 59.074 38.462 25.21 0.00 39.41 2.77
3741 9906 6.816136 TGACTCTTGAGTCTAACACATCAAA 58.184 36.000 25.21 4.26 39.41 2.69
3742 9907 6.405278 TGACTCTTGAGTCTAACACATCAA 57.595 37.500 25.21 4.68 39.41 2.57
3743 9908 6.265422 TCTTGACTCTTGAGTCTAACACATCA 59.735 38.462 25.21 5.83 39.41 3.07
3744 9909 6.584563 GTCTTGACTCTTGAGTCTAACACATC 59.415 42.308 25.21 9.17 39.41 3.06
3745 9910 6.451393 GTCTTGACTCTTGAGTCTAACACAT 58.549 40.000 25.21 0.00 39.41 3.21
3749 9914 4.525100 AGGGTCTTGACTCTTGAGTCTAAC 59.475 45.833 25.21 19.79 39.41 2.34
3753 9918 2.894126 TCAGGGTCTTGACTCTTGAGTC 59.106 50.000 20.32 20.32 39.15 3.36
3754 9919 2.964209 TCAGGGTCTTGACTCTTGAGT 58.036 47.619 2.59 2.59 0.00 3.41
3758 9923 3.711704 TGAACTTCAGGGTCTTGACTCTT 59.288 43.478 0.00 0.00 31.77 2.85
3763 9928 8.477419 AAATATTTTGAACTTCAGGGTCTTGA 57.523 30.769 0.00 0.00 31.77 3.02
3766 9931 9.454859 CTAGAAATATTTTGAACTTCAGGGTCT 57.545 33.333 1.43 0.00 31.77 3.85
3767 9932 8.184848 GCTAGAAATATTTTGAACTTCAGGGTC 58.815 37.037 1.43 0.00 0.00 4.46
3769 9934 7.122650 TGGCTAGAAATATTTTGAACTTCAGGG 59.877 37.037 1.43 0.00 0.00 4.45
3770 9935 8.055279 TGGCTAGAAATATTTTGAACTTCAGG 57.945 34.615 1.43 0.00 0.00 3.86
3774 9939 8.707938 GCAATGGCTAGAAATATTTTGAACTT 57.292 30.769 1.43 0.00 36.96 2.66
3792 9957 0.463474 GGAGACTGGAGAGCAATGGC 60.463 60.000 0.00 0.00 41.61 4.40
3793 9958 0.907486 TGGAGACTGGAGAGCAATGG 59.093 55.000 0.00 0.00 0.00 3.16
3794 9959 1.829849 TCTGGAGACTGGAGAGCAATG 59.170 52.381 0.00 0.00 0.00 2.82
3795 9960 2.109774 CTCTGGAGACTGGAGAGCAAT 58.890 52.381 0.00 0.00 34.47 3.56
3796 9961 1.554836 CTCTGGAGACTGGAGAGCAA 58.445 55.000 0.00 0.00 34.47 3.91
3799 9964 1.851304 AAGCTCTGGAGACTGGAGAG 58.149 55.000 1.35 0.00 36.99 3.20
3800 9965 2.317371 AAAGCTCTGGAGACTGGAGA 57.683 50.000 1.35 0.00 34.47 3.71
3801 9966 2.159114 GCTAAAGCTCTGGAGACTGGAG 60.159 54.545 1.35 0.00 38.21 3.86
3802 9967 1.827969 GCTAAAGCTCTGGAGACTGGA 59.172 52.381 1.35 0.00 38.21 3.86
3803 9968 1.134551 GGCTAAAGCTCTGGAGACTGG 60.135 57.143 1.39 0.00 41.70 4.00
3804 9969 1.552337 TGGCTAAAGCTCTGGAGACTG 59.448 52.381 1.39 0.00 41.70 3.51
3805 9970 1.944177 TGGCTAAAGCTCTGGAGACT 58.056 50.000 1.39 0.00 41.70 3.24
3806 9971 2.027653 ACTTGGCTAAAGCTCTGGAGAC 60.028 50.000 1.39 0.00 39.76 3.36
3807 9972 2.234908 GACTTGGCTAAAGCTCTGGAGA 59.765 50.000 1.39 0.00 39.76 3.71
3808 9973 2.027745 TGACTTGGCTAAAGCTCTGGAG 60.028 50.000 1.39 0.00 39.76 3.86
3810 9975 2.479566 TGACTTGGCTAAAGCTCTGG 57.520 50.000 1.39 0.00 39.76 3.86
3811 9976 2.161211 GCTTGACTTGGCTAAAGCTCTG 59.839 50.000 1.39 0.00 41.41 3.35
3812 9977 2.224621 TGCTTGACTTGGCTAAAGCTCT 60.225 45.455 5.90 0.00 44.23 4.09
3813 9978 2.154462 TGCTTGACTTGGCTAAAGCTC 58.846 47.619 5.90 0.00 44.23 4.09
3814 9979 2.157738 CTGCTTGACTTGGCTAAAGCT 58.842 47.619 5.90 0.00 44.23 3.74
3815 9980 2.154462 TCTGCTTGACTTGGCTAAAGC 58.846 47.619 0.00 0.00 44.18 3.51
3817 9982 5.068987 ACAAAATCTGCTTGACTTGGCTAAA 59.931 36.000 0.00 0.00 0.00 1.85
3819 9984 4.144297 ACAAAATCTGCTTGACTTGGCTA 58.856 39.130 0.00 0.00 0.00 3.93
3820 9985 2.961062 ACAAAATCTGCTTGACTTGGCT 59.039 40.909 0.00 0.00 0.00 4.75
3821 9986 3.375782 ACAAAATCTGCTTGACTTGGC 57.624 42.857 0.00 0.00 0.00 4.52
3823 9988 5.112220 TGCTACAAAATCTGCTTGACTTG 57.888 39.130 0.00 0.00 0.00 3.16
3824 9989 5.772825 TTGCTACAAAATCTGCTTGACTT 57.227 34.783 0.00 0.00 0.00 3.01
3825 9990 5.972107 ATTGCTACAAAATCTGCTTGACT 57.028 34.783 0.00 0.00 0.00 3.41
3828 9993 4.687018 TGCAATTGCTACAAAATCTGCTTG 59.313 37.500 29.37 0.00 42.66 4.01
3829 9994 4.885413 TGCAATTGCTACAAAATCTGCTT 58.115 34.783 29.37 0.00 42.66 3.91
3830 9995 4.524316 TGCAATTGCTACAAAATCTGCT 57.476 36.364 29.37 0.00 42.66 4.24
3831 9996 5.789710 AATGCAATTGCTACAAAATCTGC 57.210 34.783 29.37 0.87 42.66 4.26
3846 10011 4.440525 CCATTACTCCTTCGCAAATGCAAT 60.441 41.667 6.18 0.00 42.21 3.56
3847 10012 3.119531 CCATTACTCCTTCGCAAATGCAA 60.120 43.478 6.18 0.00 42.21 4.08
3849 10014 2.423538 ACCATTACTCCTTCGCAAATGC 59.576 45.455 0.00 0.00 37.78 3.56
3850 10015 4.701956 AACCATTACTCCTTCGCAAATG 57.298 40.909 0.00 0.00 0.00 2.32
3851 10016 5.722021 AAAACCATTACTCCTTCGCAAAT 57.278 34.783 0.00 0.00 0.00 2.32
3852 10017 6.636562 TTAAAACCATTACTCCTTCGCAAA 57.363 33.333 0.00 0.00 0.00 3.68
3853 10018 6.827586 ATTAAAACCATTACTCCTTCGCAA 57.172 33.333 0.00 0.00 0.00 4.85
3856 10021 8.293867 TGTTGAATTAAAACCATTACTCCTTCG 58.706 33.333 2.03 0.00 0.00 3.79
3857 10022 9.974980 TTGTTGAATTAAAACCATTACTCCTTC 57.025 29.630 2.03 0.00 0.00 3.46
3875 10040 9.643693 CAGAAAGGCACTAATTATTTGTTGAAT 57.356 29.630 0.00 0.00 38.49 2.57
3876 10041 8.855110 TCAGAAAGGCACTAATTATTTGTTGAA 58.145 29.630 0.00 0.00 38.49 2.69
3877 10042 8.296713 GTCAGAAAGGCACTAATTATTTGTTGA 58.703 33.333 0.00 0.00 38.49 3.18
3878 10043 8.299570 AGTCAGAAAGGCACTAATTATTTGTTG 58.700 33.333 0.00 0.00 38.49 3.33
3879 10044 8.409358 AGTCAGAAAGGCACTAATTATTTGTT 57.591 30.769 0.00 0.00 38.49 2.83
3880 10045 8.409358 AAGTCAGAAAGGCACTAATTATTTGT 57.591 30.769 0.00 0.00 38.49 2.83
3886 10051 9.553064 CAGATATAAGTCAGAAAGGCACTAATT 57.447 33.333 0.00 0.00 38.49 1.40
3887 10052 8.928448 TCAGATATAAGTCAGAAAGGCACTAAT 58.072 33.333 0.00 0.00 38.49 1.73
3888 10053 8.306313 TCAGATATAAGTCAGAAAGGCACTAA 57.694 34.615 0.00 0.00 38.49 2.24
3889 10054 7.898014 TCAGATATAAGTCAGAAAGGCACTA 57.102 36.000 0.00 0.00 38.49 2.74
3891 10056 8.443953 AATTCAGATATAAGTCAGAAAGGCAC 57.556 34.615 0.00 0.00 29.27 5.01
4040 10215 9.209175 CCCTCGGAAATTATAATCTCTAAACAG 57.791 37.037 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.