AutoCloner

Multiple sequence alignment - TraesCS2D01G334300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G334300	chr2D	100.000	2680	0	0	1	2680	427897020	427899699	0.000000e+00	4950.0
1	TraesCS2D01G334300	chr2D	91.196	2215	138	28	1	2182	427931634	427933824	0.000000e+00	2957.0
2	TraesCS2D01G334300	chr2D	90.511	2213	137	31	1	2182	427914162	427916332	0.000000e+00	2856.0
3	TraesCS2D01G334300	chr2D	95.516	1628	45	4	610	2236	427753036	427754636	0.000000e+00	2577.0
4	TraesCS2D01G334300	chr2D	85.017	881	85	27	806	1663	427925315	427926171	0.000000e+00	852.0
5	TraesCS2D01G334300	chr2D	84.580	882	87	30	806	1663	427909566	427910422	0.000000e+00	830.0
6	TraesCS2D01G334300	chr2D	83.959	879	94	25	806	1661	427944535	427945389	0.000000e+00	798.0
7	TraesCS2D01G334300	chr2D	93.674	411	19	4	2274	2680	427916348	427916755	2.280000e-170	608.0
8	TraesCS2D01G334300	chr2D	93.674	411	19	4	2274	2680	427933840	427934247	2.280000e-170	608.0
9	TraesCS2D01G334300	chr2D	85.125	558	45	13	1	555	427752188	427752710	1.090000e-148	536.0
10	TraesCS2D01G334300	chr2D	92.162	370	25	3	2274	2639	427754621	427754990	1.100000e-143	520.0
11	TraesCS2D01G334300	chr2D	81.731	104	13	4	1674	1777	427927976	427928073	6.150000e-12	82.4
12	TraesCS2D01G334300	chr2D	78.846	104	16	4	1674	1777	427910502	427910599	6.190000e-07	65.8
13	TraesCS2D01G334300	chr2B	92.924	1823	74	18	451	2236	504747559	504749363	0.000000e+00	2601.0
14	TraesCS2D01G334300	chr2B	94.777	1053	41	7	878	1921	512372887	512371840	0.000000e+00	1628.0
15	TraesCS2D01G334300	chr2B	84.573	901	82	19	1	882	512374220	512373358	0.000000e+00	841.0
16	TraesCS2D01G334300	chr2B	83.559	888	83	30	806	1663	504769979	504770833	0.000000e+00	773.0
17	TraesCS2D01G334300	chr2B	94.162	394	21	2	2274	2665	504749348	504749741	1.370000e-167	599.0
18	TraesCS2D01G334300	chr2B	92.391	368	25	3	2274	2639	512371375	512371009	3.060000e-144	521.0
19	TraesCS2D01G334300	chr2B	89.005	382	31	9	1	378	512398042	512397668	1.880000e-126	462.0
20	TraesCS2D01G334300	chr2B	87.565	386	32	9	1	378	504747152	504747529	1.470000e-117	433.0
21	TraesCS2D01G334300	chr2B	90.154	325	15	5	1923	2236	512371678	512371360	8.930000e-110	407.0
22	TraesCS2D01G334300	chr2B	93.785	177	9	2	2506	2680	512364239	512364063	5.690000e-67	265.0
23	TraesCS2D01G334300	chr2B	77.667	403	64	19	4	399	512366437	512366054	3.470000e-54	222.0
24	TraesCS2D01G334300	chr2B	92.701	137	10	0	451	587	512397638	512397502	5.850000e-47	198.0
25	TraesCS2D01G334300	chr2B	80.337	178	21	9	806	977	512364420	512364251	3.620000e-24	122.0
26	TraesCS2D01G334300	chr2A	88.960	1712	123	27	1	1693	559830813	559829149	0.000000e+00	2054.0
27	TraesCS2D01G334300	chr2A	93.277	1056	58	5	1021	2068	559749979	559748929	0.000000e+00	1544.0
28	TraesCS2D01G334300	chr2A	91.169	419	19	6	2274	2680	559748825	559748413	1.080000e-153	553.0
29	TraesCS2D01G334300	chr2A	92.623	366	20	2	1681	2045	559827636	559827277	1.100000e-143	520.0
30	TraesCS2D01G334300	chr2A	91.576	368	29	2	2274	2639	559826548	559826181	8.560000e-140	507.0
31	TraesCS2D01G334300	chr2A	86.422	464	40	12	18	475	559750440	559749994	1.120000e-133	486.0
32	TraesCS2D01G334300	chr2A	88.755	249	27	1	617	865	560210065	560209818	1.210000e-78	303.0
33	TraesCS2D01G334300	chr2A	88.261	230	23	4	2274	2500	559703287	559703059	3.400000e-69	272.0
34	TraesCS2D01G334300	chr2A	93.889	180	9	1	2042	2221	559826875	559826698	1.220000e-68	270.0
35	TraesCS2D01G334300	chr2A	86.977	215	22	4	2337	2545	559671530	559671316	1.240000e-58	237.0
36	TraesCS2D01G334300	chr2A	78.261	322	40	20	1	315	559791385	559791087	2.120000e-41	180.0
37	TraesCS2D01G334300	chr2A	89.062	128	4	2	2113	2236	559748931	559748810	1.660000e-32	150.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G334300	chr2D	427897020	427899699	2679	False	4950.00	4950	100.000000	1	2680	1	chr2D.!!$F1	2679
1	TraesCS2D01G334300	chr2D	427752188	427754990	2802	False	1211.00	2577	90.934333	1	2639	3	chr2D.!!$F3	2638
2	TraesCS2D01G334300	chr2D	427925315	427934247	8932	False	1124.85	2957	87.904500	1	2680	4	chr2D.!!$F5	2679
3	TraesCS2D01G334300	chr2D	427909566	427916755	7189	False	1089.95	2856	86.902750	1	2680	4	chr2D.!!$F4	2679
4	TraesCS2D01G334300	chr2D	427944535	427945389	854	False	798.00	798	83.959000	806	1661	1	chr2D.!!$F2	855
5	TraesCS2D01G334300	chr2B	504747152	504749741	2589	False	1211.00	2601	91.550333	1	2665	3	chr2B.!!$F2	2664
6	TraesCS2D01G334300	chr2B	512371009	512374220	3211	True	849.25	1628	90.473750	1	2639	4	chr2B.!!$R2	2638
7	TraesCS2D01G334300	chr2B	504769979	504770833	854	False	773.00	773	83.559000	806	1663	1	chr2B.!!$F1	857
8	TraesCS2D01G334300	chr2B	512397502	512398042	540	True	330.00	462	90.853000	1	587	2	chr2B.!!$R3	586
9	TraesCS2D01G334300	chr2B	512364063	512366437	2374	True	203.00	265	83.929667	4	2680	3	chr2B.!!$R1	2676
10	TraesCS2D01G334300	chr2A	559826181	559830813	4632	True	837.75	2054	91.762000	1	2639	4	chr2A.!!$R6	2638
11	TraesCS2D01G334300	chr2A	559748413	559750440	2027	True	683.25	1544	89.982500	18	2680	4	chr2A.!!$R5	2662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
480	8070	1.403249	CCCGTACAAGGTACTCCGTTG	60.403	57.143	5.15	0.0	38.49	4.1	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1946	12087	1.399727	CGAACAAAGCGGACCATGAAC	60.4	52.381	0.0	0.0	0.0	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	6352	2.035321	GGCGACACCATTTTGGAAAGAA	59.965	45.455	0.00	0.00	40.96	2.52
23	6353	3.491792	GGCGACACCATTTTGGAAAGAAA	60.492	43.478	0.00	0.00	40.96	2.52
42	6373	5.278604	AGAAAAACGTCAATGCTTACAACC	58.721	37.500	0.00	0.00	0.00	3.77
64	6395	9.360093	CAACCTATAGTCTAATTTCGATGATCC	57.640	37.037	0.00	0.00	0.00	3.36
99	6436	4.101942	GCGGATCGTGAAGATAGATCATC	58.898	47.826	0.00	0.00	41.71	2.92
136	6473	8.260099	TGGTCTGAGAGAGATATGATTTTGAT	57.740	34.615	0.00	0.00	31.63	2.57
160	6499	5.592282	TGTTTCAAAAGTAACATCTGGAGCA	59.408	36.000	0.00	0.00	29.82	4.26
267	6607	3.208594	CATGTATGGTCTCACATGTGGG	58.791	50.000	25.16	22.85	44.50	4.61
269	6609	3.114606	TGTATGGTCTCACATGTGGGAT	58.885	45.455	30.31	17.63	42.81	3.85
393	7510	7.807977	ATCAAGGCAAATATATTCGACAAGT	57.192	32.000	0.00	0.00	0.00	3.16
402	7588	8.691727	CAAATATATTCGACAAGTACCTCTTCG	58.308	37.037	0.00	0.00	33.63	3.79
437	7623	6.237279	CGAAAGTCATGCGGATTTAATTTGTG	60.237	38.462	0.23	0.00	0.00	3.33
480	8070	1.403249	CCCGTACAAGGTACTCCGTTG	60.403	57.143	5.15	0.00	38.49	4.10
504	8094	5.009010	GCTTCTGAAGAAACAAATCACCTCA	59.991	40.000	21.06	0.00	33.07	3.86
591	8211	4.404654	CGCAAGGCTTGGGCGTTC	62.405	66.667	27.96	10.32	43.45	3.95
596	8218	1.774894	AAGGCTTGGGCGTTCCTACA	61.775	55.000	0.00	0.00	41.89	2.74
656	8520	4.163078	TGGCTCCCTCAATTCTCTAGAAAG	59.837	45.833	0.00	0.00	37.61	2.62
696	8560	7.283580	TCTCTTGAAATTTCGGGACTAAAACAA	59.716	33.333	13.34	0.00	0.00	2.83
789	8657	2.421811	GCCATTTATTTGGGCCAAGCAT	60.422	45.455	19.90	13.61	41.90	3.79
896	9282	6.923670	ACCAGATTAGACACCCTCTATCTAA	58.076	40.000	0.00	0.00	38.84	2.10
1012	9426	3.181461	CCAGGGCATAATCGAACTCTCTT	60.181	47.826	0.00	0.00	0.00	2.85
1306	9725	2.047179	GGGCTTCTTCTTCGCGGT	60.047	61.111	6.13	0.00	0.00	5.68
1721	11700	8.519526	TGTTGATTTCTTTAGAGTTGTTGTGTT	58.480	29.630	0.00	0.00	0.00	3.32
1748	11727	4.974368	TTCGTTTCATTTCAGTTGTGGT	57.026	36.364	0.00	0.00	0.00	4.16
1894	11873	7.441890	TGATTTATGTTTTATGTGGACGTGT	57.558	32.000	0.00	0.00	0.00	4.49
1915	11896	2.029020	TGTCTTGGTCTGATGTCTTCCG	60.029	50.000	0.00	0.00	0.00	4.30
1929	12070	8.146479	TGATGTCTTCCGATCTGAATAATTTG	57.854	34.615	0.00	0.00	0.00	2.32
2005	12150	8.701895	TGGAGTAGTATTTAGGAGTAATGGTTG	58.298	37.037	0.00	0.00	0.00	3.77
2079	12640	7.227910	TGAATACCACTCCAGTTTCAGTTTTAC	59.772	37.037	0.00	0.00	0.00	2.01
2137	12698	5.048434	AGCAAACAAGCTAAAGATGTCTTCC	60.048	40.000	0.00	0.00	44.50	3.46
2182	12747	1.909700	TTGGATGACTTTGCTGGACC	58.090	50.000	0.00	0.00	0.00	4.46
2183	12748	1.067295	TGGATGACTTTGCTGGACCT	58.933	50.000	0.00	0.00	0.00	3.85
2184	12749	1.271543	TGGATGACTTTGCTGGACCTG	60.272	52.381	0.00	0.00	0.00	4.00
2185	12750	1.457346	GATGACTTTGCTGGACCTGG	58.543	55.000	0.01	0.00	0.00	4.45
2186	12751	1.003580	GATGACTTTGCTGGACCTGGA	59.996	52.381	0.00	0.00	0.00	3.86
2187	12752	1.067295	TGACTTTGCTGGACCTGGAT	58.933	50.000	0.00	0.00	0.00	3.41
2228	12951	7.935755	AGTATAAGCTGTAATGTTCATGCATCT	59.064	33.333	0.00	0.00	0.00	2.90
2229	12952	4.895224	AGCTGTAATGTTCATGCATCTG	57.105	40.909	0.00	0.00	0.00	2.90
2230	12953	4.267536	AGCTGTAATGTTCATGCATCTGT	58.732	39.130	0.00	0.00	0.00	3.41
2231	12954	4.095932	AGCTGTAATGTTCATGCATCTGTG	59.904	41.667	0.00	0.00	0.00	3.66
2232	12955	4.095334	GCTGTAATGTTCATGCATCTGTGA	59.905	41.667	0.00	0.00	0.00	3.58
2233	12956	5.550232	TGTAATGTTCATGCATCTGTGAC	57.450	39.130	0.00	0.00	0.00	3.67
2234	12957	5.247862	TGTAATGTTCATGCATCTGTGACT	58.752	37.500	0.00	0.00	0.00	3.41
2235	12958	5.706833	TGTAATGTTCATGCATCTGTGACTT	59.293	36.000	0.00	0.00	0.00	3.01
2236	12959	5.717078	AATGTTCATGCATCTGTGACTTT	57.283	34.783	0.00	0.00	0.00	2.66
2237	12960	5.717078	ATGTTCATGCATCTGTGACTTTT	57.283	34.783	0.00	0.00	0.00	2.27
2238	12961	5.518848	TGTTCATGCATCTGTGACTTTTT	57.481	34.783	0.00	0.00	0.00	1.94
2261	12984	5.488645	TTTTGAACTGAAACCCGTAGAAC	57.511	39.130	0.00	0.00	0.00	3.01
2262	12985	3.823281	TGAACTGAAACCCGTAGAACA	57.177	42.857	0.00	0.00	0.00	3.18
2263	12986	4.139859	TGAACTGAAACCCGTAGAACAA	57.860	40.909	0.00	0.00	0.00	2.83
2264	12987	4.710324	TGAACTGAAACCCGTAGAACAAT	58.290	39.130	0.00	0.00	0.00	2.71
2265	12988	4.753107	TGAACTGAAACCCGTAGAACAATC	59.247	41.667	0.00	0.00	0.00	2.67
2266	12989	3.323243	ACTGAAACCCGTAGAACAATCG	58.677	45.455	0.00	0.00	0.00	3.34
2267	12990	3.243975	ACTGAAACCCGTAGAACAATCGT	60.244	43.478	0.00	0.00	0.00	3.73
2268	12991	3.731089	TGAAACCCGTAGAACAATCGTT	58.269	40.909	0.00	0.00	38.33	3.85
2279	13002	4.882671	GAACAATCGTTCTACCATGCAT	57.117	40.909	0.00	0.00	46.72	3.96
2280	13003	4.837567	GAACAATCGTTCTACCATGCATC	58.162	43.478	0.00	0.00	46.72	3.91
2289	13012	3.865446	TCTACCATGCATCTGTGACTTG	58.135	45.455	0.00	0.00	0.00	3.16
2290	13013	2.574006	ACCATGCATCTGTGACTTGT	57.426	45.000	0.00	0.00	0.00	3.16
2459	13195	8.728596	TTCTGGAAATTATTTCTTAAACCCCA	57.271	30.769	16.02	4.42	39.59	4.96
2500	13236	1.427072	AAGTGGACCTGGAGTTGGGG	61.427	60.000	0.00	0.00	0.00	4.96
2501	13237	3.256960	TGGACCTGGAGTTGGGGC	61.257	66.667	0.00	0.00	0.00	5.80
2644	13382	0.677288	TCATCTCGTGTTTGGACGGT	59.323	50.000	0.00	0.00	39.88	4.83
2676	13416	2.360165	GCCAAGAGGGATTTAGCACATG	59.640	50.000	0.00	0.00	40.01	3.21

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
14	6342	4.647424	AGCATTGACGTTTTTCTTTCCA	57.353	36.364	0.00	0.00	0.00	3.53
22	6352	4.911514	AGGTTGTAAGCATTGACGTTTT	57.088	36.364	0.00	0.00	0.00	2.43
23	6353	6.877322	ACTATAGGTTGTAAGCATTGACGTTT	59.123	34.615	4.43	0.00	0.00	3.60
42	6373	7.763356	ACGGGATCATCGAAATTAGACTATAG	58.237	38.462	13.40	0.00	0.00	1.31
64	6395	1.683790	GATCCGCTGTGTTTCGACGG	61.684	60.000	2.21	2.21	45.15	4.79
75	6406	3.057946	TGATCTATCTTCACGATCCGCTG	60.058	47.826	0.00	0.00	34.17	5.18
99	6436	4.339530	TCTCTCAGACCATTACTCGGATTG	59.660	45.833	0.00	0.00	0.00	2.67
136	6473	5.592282	TGCTCCAGATGTTACTTTTGAAACA	59.408	36.000	0.00	0.00	0.00	2.83
153	6490	1.073964	CAATGACGTCAGTGCTCCAG	58.926	55.000	30.10	8.62	35.12	3.86
160	6499	3.181520	GCGATAAAAGCAATGACGTCAGT	60.182	43.478	24.41	19.38	34.19	3.41
227	6567	9.520204	CATACATGCTAATTTTAAAGGGACAAG	57.480	33.333	0.00	0.00	0.00	3.16
264	6604	4.649267	TCACACTCCACATTTTATCCCA	57.351	40.909	0.00	0.00	0.00	4.37
266	6606	6.732154	CATGATCACACTCCACATTTTATCC	58.268	40.000	0.00	0.00	0.00	2.59
267	6607	6.204359	GCATGATCACACTCCACATTTTATC	58.796	40.000	0.00	0.00	0.00	1.75
269	6609	4.398988	GGCATGATCACACTCCACATTTTA	59.601	41.667	0.00	0.00	0.00	1.52
383	7500	3.504906	TGACGAAGAGGTACTTGTCGAAT	59.495	43.478	12.81	0.00	44.28	3.34
393	7510	2.821378	TCGGACAATTGACGAAGAGGTA	59.179	45.455	21.27	3.95	33.21	3.08
402	7588	3.492313	GCATGACTTTCGGACAATTGAC	58.508	45.455	13.59	5.81	0.00	3.18
437	7623	0.868406	CGGCTTGGAGTGAGTTGTTC	59.132	55.000	0.00	0.00	0.00	3.18
480	8070	5.009010	TGAGGTGATTTGTTTCTTCAGAAGC	59.991	40.000	5.15	0.00	35.21	3.86
504	8094	2.290260	TGGCTTTCGGACAACTGATGAT	60.290	45.455	0.00	0.00	0.00	2.45
635	8499	5.351948	ACTTTCTAGAGAATTGAGGGAGC	57.648	43.478	0.00	0.00	33.54	4.70
656	8520	5.968387	TTCAAGAGAAACGAGTCTCAAAC	57.032	39.130	18.05	0.00	45.55	2.93
696	8560	0.603975	GGCTTCGAAACACCTCAGCT	60.604	55.000	0.00	0.00	0.00	4.24
789	8657	3.510388	TCGAATTTGTTTGCACAACCA	57.490	38.095	8.60	0.00	42.87	3.67
980	9378	4.504864	CGATTATGCCCTGGGATAACTCAA	60.505	45.833	19.27	0.00	40.28	3.02
1707	11686	8.428186	AACGAAATAGAAACACAACAACTCTA	57.572	30.769	0.00	0.00	0.00	2.43
1721	11700	7.860373	CCACAACTGAAATGAAACGAAATAGAA	59.140	33.333	0.00	0.00	0.00	2.10
1748	11727	1.992667	CAACTAGATCGAGCGCACAAA	59.007	47.619	11.47	0.00	0.00	2.83
1894	11873	2.029020	CGGAAGACATCAGACCAAGACA	60.029	50.000	0.00	0.00	0.00	3.41
1929	12070	8.682936	ACCATGAACATAGGTCATAAAATCTC	57.317	34.615	0.00	0.00	0.00	2.75
1941	12082	2.332063	AAGCGGACCATGAACATAGG	57.668	50.000	0.00	0.00	0.00	2.57
1946	12087	1.399727	CGAACAAAGCGGACCATGAAC	60.400	52.381	0.00	0.00	0.00	3.18
2005	12150	5.751243	TTTGAAACTGAAACTGGAGTAGC	57.249	39.130	0.00	0.00	0.00	3.58
2079	12640	6.637657	ACTGGAAACCGTTACTCCTAAATAG	58.362	40.000	4.08	0.00	0.00	1.73
2137	12698	6.489361	AGCTTAGCTTCCAATTATTCAGATGG	59.511	38.462	0.00	0.00	33.89	3.51
2238	12961	5.415077	TGTTCTACGGGTTTCAGTTCAAAAA	59.585	36.000	0.00	0.00	0.00	1.94
2239	12962	4.942483	TGTTCTACGGGTTTCAGTTCAAAA	59.058	37.500	0.00	0.00	0.00	2.44
2240	12963	4.515361	TGTTCTACGGGTTTCAGTTCAAA	58.485	39.130	0.00	0.00	0.00	2.69
2241	12964	4.139859	TGTTCTACGGGTTTCAGTTCAA	57.860	40.909	0.00	0.00	0.00	2.69
2242	12965	3.823281	TGTTCTACGGGTTTCAGTTCA	57.177	42.857	0.00	0.00	0.00	3.18
2243	12966	4.143179	CGATTGTTCTACGGGTTTCAGTTC	60.143	45.833	0.00	0.00	0.00	3.01
2244	12967	3.744426	CGATTGTTCTACGGGTTTCAGTT	59.256	43.478	0.00	0.00	0.00	3.16
2245	12968	3.243975	ACGATTGTTCTACGGGTTTCAGT	60.244	43.478	0.00	0.00	0.00	3.41
2246	12969	3.323243	ACGATTGTTCTACGGGTTTCAG	58.677	45.455	0.00	0.00	0.00	3.02
2247	12970	3.389925	ACGATTGTTCTACGGGTTTCA	57.610	42.857	0.00	0.00	0.00	2.69
2259	12982	4.333649	CAGATGCATGGTAGAACGATTGTT	59.666	41.667	2.46	0.00	42.23	2.83
2260	12983	3.873361	CAGATGCATGGTAGAACGATTGT	59.127	43.478	2.46	0.00	0.00	2.71
2261	12984	3.873361	ACAGATGCATGGTAGAACGATTG	59.127	43.478	2.46	0.00	0.00	2.67
2262	12985	3.873361	CACAGATGCATGGTAGAACGATT	59.127	43.478	2.46	0.00	0.00	3.34
2263	12986	3.132824	TCACAGATGCATGGTAGAACGAT	59.867	43.478	2.46	0.00	0.00	3.73
2264	12987	2.495669	TCACAGATGCATGGTAGAACGA	59.504	45.455	2.46	0.00	0.00	3.85
2265	12988	2.604914	GTCACAGATGCATGGTAGAACG	59.395	50.000	2.46	0.00	0.00	3.95
2266	12989	3.866651	AGTCACAGATGCATGGTAGAAC	58.133	45.455	2.46	2.12	0.00	3.01
2267	12990	4.256110	CAAGTCACAGATGCATGGTAGAA	58.744	43.478	2.46	0.00	0.00	2.10
2268	12991	3.261643	ACAAGTCACAGATGCATGGTAGA	59.738	43.478	2.46	0.49	0.00	2.59
2269	12992	3.603532	ACAAGTCACAGATGCATGGTAG	58.396	45.455	2.46	0.00	0.00	3.18
2270	12993	3.261643	AGACAAGTCACAGATGCATGGTA	59.738	43.478	2.46	0.00	0.00	3.25
2271	12994	2.039480	AGACAAGTCACAGATGCATGGT	59.961	45.455	2.46	0.00	0.00	3.55
2272	12995	2.708051	AGACAAGTCACAGATGCATGG	58.292	47.619	2.46	0.00	0.00	3.66
2273	12996	4.692155	TGTTAGACAAGTCACAGATGCATG	59.308	41.667	2.46	0.00	0.00	4.06
2274	12997	4.898320	TGTTAGACAAGTCACAGATGCAT	58.102	39.130	0.00	0.00	0.00	3.96
2275	12998	4.039124	TCTGTTAGACAAGTCACAGATGCA	59.961	41.667	15.37	0.00	37.57	3.96
2276	12999	4.560128	TCTGTTAGACAAGTCACAGATGC	58.440	43.478	15.37	0.00	37.57	3.91
2277	13000	7.664082	AAATCTGTTAGACAAGTCACAGATG	57.336	36.000	24.72	5.18	45.05	2.90
2278	13001	9.778741	TTAAAATCTGTTAGACAAGTCACAGAT	57.221	29.630	21.21	21.21	46.41	2.90
2279	13002	9.607988	TTTAAAATCTGTTAGACAAGTCACAGA	57.392	29.630	19.33	19.33	42.73	3.41
2280	13003	9.651718	GTTTAAAATCTGTTAGACAAGTCACAG	57.348	33.333	12.12	12.12	35.90	3.66
2600	13337	5.967088	GCCAAAGAAAAAGTTTGCATTTCAG	59.033	36.000	11.26	2.61	35.91	3.02
2644	13382	1.839994	CCCTCTTGGCAAGATGGTCTA	59.160	52.381	31.72	11.72	38.19	2.59

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.