Multiple sequence alignment - TraesCS2D01G334100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G334100 chr2D 100.000 7215 0 0 1 7215 427607164 427614378 0.000000e+00 13324.0
1 TraesCS2D01G334100 chr2D 91.429 70 5 1 2684 2753 342850947 342850879 2.140000e-15 95.3
2 TraesCS2D01G334100 chr2A 96.014 4390 125 31 2755 7118 560689235 560684870 0.000000e+00 7092.0
3 TraesCS2D01G334100 chr2A 93.934 2242 81 17 538 2755 560691492 560689282 0.000000e+00 3336.0
4 TraesCS2D01G334100 chr2A 88.462 130 9 3 93 221 560691764 560691640 1.250000e-32 152.0
5 TraesCS2D01G334100 chr2A 92.857 70 4 1 2684 2753 382617538 382617470 4.610000e-17 100.0
6 TraesCS2D01G334100 chr2A 90.789 76 6 1 2678 2753 386732426 386732500 4.610000e-17 100.0
7 TraesCS2D01G334100 chr2B 91.725 2574 116 37 3047 5565 504480096 504482627 0.000000e+00 3483.0
8 TraesCS2D01G334100 chr2B 91.795 780 43 8 1924 2687 504479198 504479972 0.000000e+00 1066.0
9 TraesCS2D01G334100 chr2B 88.564 822 57 16 5628 6420 504482619 504483432 0.000000e+00 963.0
10 TraesCS2D01G334100 chr2B 87.264 793 67 25 540 1325 504478277 504479042 0.000000e+00 874.0
11 TraesCS2D01G334100 chr2B 92.246 619 34 8 6601 7211 504487443 504488055 0.000000e+00 865.0
12 TraesCS2D01G334100 chr2B 92.025 163 9 3 268 428 475125046 475124886 7.280000e-55 226.0
13 TraesCS2D01G334100 chr2B 93.162 117 8 0 2755 2871 504479972 504480088 9.620000e-39 172.0
14 TraesCS2D01G334100 chr2B 85.890 163 14 6 1675 1836 504479041 504479195 1.610000e-36 165.0
15 TraesCS2D01G334100 chr2B 92.537 67 4 1 201 267 504478210 504478275 2.140000e-15 95.3
16 TraesCS2D01G334100 chr2B 91.429 70 5 1 2684 2753 558943000 558942932 2.140000e-15 95.3
17 TraesCS2D01G334100 chr7B 92.216 167 8 4 270 433 73660208 73660044 1.570000e-56 231.0
18 TraesCS2D01G334100 chr7B 92.593 162 8 3 268 427 538214987 538214828 5.630000e-56 230.0
19 TraesCS2D01G334100 chr7A 92.638 163 8 3 272 432 1365306 1365466 1.570000e-56 231.0
20 TraesCS2D01G334100 chr7A 89.231 65 6 1 3513 3577 735949090 735949153 6.000000e-11 80.5
21 TraesCS2D01G334100 chr6D 92.547 161 8 3 268 426 57855747 57855589 2.020000e-55 228.0
22 TraesCS2D01G334100 chr6D 91.429 70 5 1 2684 2753 61650169 61650101 2.140000e-15 95.3
23 TraesCS2D01G334100 chr6D 89.189 74 7 1 2678 2751 447178633 447178705 2.770000e-14 91.6
24 TraesCS2D01G334100 chr6B 92.547 161 8 3 268 426 641301011 641300853 2.020000e-55 228.0
25 TraesCS2D01G334100 chr5B 92.547 161 8 3 268 426 631454423 631454265 2.020000e-55 228.0
26 TraesCS2D01G334100 chr4B 91.617 167 9 4 268 431 588549966 588549802 7.280000e-55 226.0
27 TraesCS2D01G334100 chr4B 91.566 166 10 3 268 431 588581793 588581630 7.280000e-55 226.0
28 TraesCS2D01G334100 chr3A 83.193 119 13 6 3489 3605 725065793 725065680 1.280000e-17 102.0
29 TraesCS2D01G334100 chr3B 82.906 117 14 5 3485 3601 797725755 797725645 4.610000e-17 100.0
30 TraesCS2D01G334100 chr5D 91.429 70 5 1 2684 2753 53272640 53272572 2.140000e-15 95.3
31 TraesCS2D01G334100 chr5D 84.444 90 8 5 3489 3577 508283846 508283930 4.640000e-12 84.2
32 TraesCS2D01G334100 chr4A 89.474 76 7 1 2678 2753 706363731 706363805 2.140000e-15 95.3
33 TraesCS2D01G334100 chr3D 83.908 87 11 3 3506 3591 594150308 594150392 6.000000e-11 80.5
34 TraesCS2D01G334100 chr3D 87.500 56 3 3 3489 3544 347589570 347589519 2.170000e-05 62.1
35 TraesCS2D01G334100 chr1D 87.273 55 2 4 3489 3542 148673448 148673398 2.810000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G334100 chr2D 427607164 427614378 7214 False 13324.000000 13324 100.000000 1 7215 1 chr2D.!!$F1 7214
1 TraesCS2D01G334100 chr2A 560684870 560691764 6894 True 3526.666667 7092 92.803333 93 7118 3 chr2A.!!$R2 7025
2 TraesCS2D01G334100 chr2B 504478210 504483432 5222 False 974.042857 3483 90.133857 201 6420 7 chr2B.!!$F2 6219
3 TraesCS2D01G334100 chr2B 504487443 504488055 612 False 865.000000 865 92.246000 6601 7211 1 chr2B.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 378 0.034896 AGGTGATGGACGTTGGTGTC 59.965 55.000 0.00 0.0 38.17 3.67 F
316 379 0.250124 GGTGATGGACGTTGGTGTCA 60.250 55.000 0.00 0.0 40.72 3.58 F
946 1033 0.474184 CATATTTCCCCGCCCACTCT 59.526 55.000 0.00 0.0 0.00 3.24 F
1534 1629 0.955178 ATCTCGTCCAGGCTATGTCG 59.045 55.000 0.00 0.0 0.00 4.35 F
3333 3570 1.067142 ACATGCGTAGTGTTCGGTGAT 60.067 47.619 0.00 0.0 0.00 3.06 F
4446 4714 0.179089 GACATCATGTCAGGCTCGCT 60.179 55.000 13.26 0.0 46.22 4.93 F
4511 4779 1.211703 TCTTGCATGGGCGAAATAGGA 59.788 47.619 0.00 0.0 45.35 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1555 1650 0.517316 CCTTCGAACTTTGCTTCGGG 59.483 55.000 6.05 0.00 42.73 5.14 R
1656 1751 0.535780 CAGCAACTTCAGCACCTCCA 60.536 55.000 0.00 0.00 0.00 3.86 R
1876 1971 1.836555 GCTAGTGTACGCGAGTTAACG 59.163 52.381 15.93 0.00 46.40 3.18 R
3501 3738 1.859398 GCAAAGTCATCGTGTCGCA 59.141 52.632 0.00 0.00 0.00 5.10 R
5081 5353 0.958382 TGGCATAACGTGTGGCTTCC 60.958 55.000 22.42 8.34 42.13 3.46 R
6001 6299 0.242286 TCAGTTGAGCAGACTCTCGC 59.758 55.000 0.00 0.00 43.85 5.03 R
6460 6777 0.387565 TCGCAAGGCAAACTTTTCCC 59.612 50.000 0.00 0.00 37.29 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.906423 CAACAACTTCTAGATCAGCATGC 58.094 43.478 10.51 10.51 34.76 4.06
23 24 3.193263 ACAACTTCTAGATCAGCATGCG 58.807 45.455 13.01 7.64 34.76 4.73
24 25 1.863267 ACTTCTAGATCAGCATGCGC 58.137 50.000 13.01 0.00 34.76 6.09
25 26 1.137675 ACTTCTAGATCAGCATGCGCA 59.862 47.619 14.96 14.96 42.27 6.09
26 27 1.526041 CTTCTAGATCAGCATGCGCAC 59.474 52.381 14.90 0.00 42.27 5.34
27 28 0.595825 TCTAGATCAGCATGCGCACG 60.596 55.000 14.90 5.23 42.27 5.34
28 29 0.873312 CTAGATCAGCATGCGCACGT 60.873 55.000 14.90 0.00 42.27 4.49
29 30 1.147557 TAGATCAGCATGCGCACGTG 61.148 55.000 14.90 12.28 42.27 4.49
37 38 2.971959 TGCGCACGTGCAACTGAT 60.972 55.556 37.03 0.00 43.02 2.90
38 39 2.202222 GCGCACGTGCAACTGATC 60.202 61.111 37.03 14.32 42.21 2.92
39 40 2.953605 GCGCACGTGCAACTGATCA 61.954 57.895 37.03 0.00 42.21 2.92
40 41 1.569003 CGCACGTGCAACTGATCAA 59.431 52.632 37.03 0.00 42.21 2.57
41 42 0.166597 CGCACGTGCAACTGATCAAT 59.833 50.000 37.03 0.00 42.21 2.57
42 43 1.609932 GCACGTGCAACTGATCAATG 58.390 50.000 34.52 0.00 41.59 2.82
43 44 1.197492 GCACGTGCAACTGATCAATGA 59.803 47.619 34.52 0.00 41.59 2.57
44 45 2.159476 GCACGTGCAACTGATCAATGAT 60.159 45.455 34.52 0.00 41.59 2.45
45 46 3.671433 GCACGTGCAACTGATCAATGATT 60.671 43.478 34.52 0.00 41.59 2.57
46 47 4.478699 CACGTGCAACTGATCAATGATTT 58.521 39.130 0.82 0.00 31.75 2.17
47 48 4.919168 CACGTGCAACTGATCAATGATTTT 59.081 37.500 0.82 0.00 31.75 1.82
48 49 4.919168 ACGTGCAACTGATCAATGATTTTG 59.081 37.500 11.36 3.37 31.75 2.44
49 50 4.919168 CGTGCAACTGATCAATGATTTTGT 59.081 37.500 11.36 0.00 31.75 2.83
50 51 5.164129 CGTGCAACTGATCAATGATTTTGTG 60.164 40.000 11.36 0.00 31.75 3.33
51 52 5.119588 GTGCAACTGATCAATGATTTTGTGG 59.880 40.000 11.36 0.00 0.00 4.17
52 53 5.010820 TGCAACTGATCAATGATTTTGTGGA 59.989 36.000 11.36 0.00 0.00 4.02
53 54 5.575606 GCAACTGATCAATGATTTTGTGGAG 59.424 40.000 11.36 0.00 0.00 3.86
54 55 5.320549 ACTGATCAATGATTTTGTGGAGC 57.679 39.130 0.00 0.00 0.00 4.70
55 56 4.768448 ACTGATCAATGATTTTGTGGAGCA 59.232 37.500 0.00 0.00 0.00 4.26
56 57 5.421056 ACTGATCAATGATTTTGTGGAGCAT 59.579 36.000 0.00 0.00 0.00 3.79
57 58 6.604396 ACTGATCAATGATTTTGTGGAGCATA 59.396 34.615 0.00 0.00 0.00 3.14
58 59 7.287005 ACTGATCAATGATTTTGTGGAGCATAT 59.713 33.333 0.00 0.00 0.00 1.78
59 60 7.430441 TGATCAATGATTTTGTGGAGCATATG 58.570 34.615 0.00 0.00 0.00 1.78
60 61 6.778834 TCAATGATTTTGTGGAGCATATGT 57.221 33.333 4.29 0.00 0.00 2.29
61 62 7.878547 TCAATGATTTTGTGGAGCATATGTA 57.121 32.000 4.29 0.00 0.00 2.29
62 63 8.467963 TCAATGATTTTGTGGAGCATATGTAT 57.532 30.769 4.29 0.00 0.00 2.29
63 64 9.571816 TCAATGATTTTGTGGAGCATATGTATA 57.428 29.630 4.29 0.00 0.00 1.47
70 71 9.791801 TTTTGTGGAGCATATGTATATACATGT 57.208 29.630 30.35 23.89 45.77 3.21
71 72 9.791801 TTTGTGGAGCATATGTATATACATGTT 57.208 29.630 30.35 18.51 45.77 2.71
72 73 8.776376 TGTGGAGCATATGTATATACATGTTG 57.224 34.615 30.35 26.39 45.77 3.33
73 74 8.592809 TGTGGAGCATATGTATATACATGTTGA 58.407 33.333 30.35 16.04 45.77 3.18
74 75 9.091784 GTGGAGCATATGTATATACATGTTGAG 57.908 37.037 30.35 17.15 45.77 3.02
75 76 7.765819 TGGAGCATATGTATATACATGTTGAGC 59.234 37.037 30.35 23.66 45.77 4.26
76 77 7.765819 GGAGCATATGTATATACATGTTGAGCA 59.234 37.037 30.35 14.49 45.77 4.26
77 78 9.322773 GAGCATATGTATATACATGTTGAGCAT 57.677 33.333 30.35 15.85 45.77 3.79
78 79 9.676861 AGCATATGTATATACATGTTGAGCATT 57.323 29.630 30.35 11.77 45.77 3.56
87 88 5.571784 ACATGTTGAGCATTAGATTGGTG 57.428 39.130 0.00 0.00 35.19 4.17
88 89 5.255687 ACATGTTGAGCATTAGATTGGTGA 58.744 37.500 0.00 0.00 35.19 4.02
89 90 5.889853 ACATGTTGAGCATTAGATTGGTGAT 59.110 36.000 0.00 0.00 35.19 3.06
90 91 5.823209 TGTTGAGCATTAGATTGGTGATG 57.177 39.130 0.00 0.00 0.00 3.07
91 92 5.255687 TGTTGAGCATTAGATTGGTGATGT 58.744 37.500 0.00 0.00 0.00 3.06
162 163 8.574251 TTTATTGGTGAATAGTTGTGTGCTAT 57.426 30.769 0.00 0.00 0.00 2.97
163 164 8.574251 TTATTGGTGAATAGTTGTGTGCTATT 57.426 30.769 0.00 0.00 40.59 1.73
164 165 6.892658 TTGGTGAATAGTTGTGTGCTATTT 57.107 33.333 0.00 0.00 38.73 1.40
165 166 6.892658 TGGTGAATAGTTGTGTGCTATTTT 57.107 33.333 0.00 0.00 38.73 1.82
169 170 8.673711 GGTGAATAGTTGTGTGCTATTTTCATA 58.326 33.333 0.00 0.00 38.73 2.15
214 216 6.622833 TGAATGATGTATCGTGCATGAAAT 57.377 33.333 13.65 7.24 0.00 2.17
254 317 2.436646 AGCGGACAAATGGAGCCG 60.437 61.111 0.00 0.00 46.14 5.52
258 321 2.106683 GGACAAATGGAGCCGGACG 61.107 63.158 5.05 0.00 0.00 4.79
280 343 4.969196 CACGTCGGTGGCTGCTGT 62.969 66.667 0.00 0.00 40.58 4.40
281 344 4.969196 ACGTCGGTGGCTGCTGTG 62.969 66.667 0.00 0.00 0.00 3.66
283 346 4.626081 GTCGGTGGCTGCTGTGGT 62.626 66.667 0.00 0.00 0.00 4.16
284 347 4.624364 TCGGTGGCTGCTGTGGTG 62.624 66.667 0.00 0.00 0.00 4.17
286 349 4.586235 GGTGGCTGCTGTGGTGGT 62.586 66.667 0.00 0.00 0.00 4.16
287 350 3.289834 GTGGCTGCTGTGGTGGTG 61.290 66.667 0.00 0.00 0.00 4.17
305 368 3.083349 CCGGAGGCAGGTGATGGA 61.083 66.667 0.00 0.00 46.14 3.41
306 369 2.187946 CGGAGGCAGGTGATGGAC 59.812 66.667 0.00 0.00 0.00 4.02
307 370 2.187946 GGAGGCAGGTGATGGACG 59.812 66.667 0.00 0.00 0.00 4.79
308 371 2.660064 GGAGGCAGGTGATGGACGT 61.660 63.158 0.00 0.00 0.00 4.34
309 372 1.296715 GAGGCAGGTGATGGACGTT 59.703 57.895 0.00 0.00 0.00 3.99
310 373 1.003355 AGGCAGGTGATGGACGTTG 60.003 57.895 0.00 0.00 0.00 4.10
311 374 2.040544 GGCAGGTGATGGACGTTGG 61.041 63.158 0.00 0.00 0.00 3.77
312 375 1.302511 GCAGGTGATGGACGTTGGT 60.303 57.895 0.00 0.00 0.00 3.67
313 376 1.577328 GCAGGTGATGGACGTTGGTG 61.577 60.000 0.00 0.00 0.00 4.17
314 377 0.250295 CAGGTGATGGACGTTGGTGT 60.250 55.000 0.00 0.00 0.00 4.16
315 378 0.034896 AGGTGATGGACGTTGGTGTC 59.965 55.000 0.00 0.00 38.17 3.67
316 379 0.250124 GGTGATGGACGTTGGTGTCA 60.250 55.000 0.00 0.00 40.72 3.58
317 380 1.588674 GTGATGGACGTTGGTGTCAA 58.411 50.000 0.00 0.00 40.72 3.18
318 381 1.944024 GTGATGGACGTTGGTGTCAAA 59.056 47.619 0.00 0.00 40.72 2.69
319 382 1.944024 TGATGGACGTTGGTGTCAAAC 59.056 47.619 0.00 0.00 40.72 2.93
320 383 2.218603 GATGGACGTTGGTGTCAAACT 58.781 47.619 0.00 0.00 40.72 2.66
321 384 1.658994 TGGACGTTGGTGTCAAACTC 58.341 50.000 0.00 0.00 40.72 3.01
322 385 1.066071 TGGACGTTGGTGTCAAACTCA 60.066 47.619 0.00 0.00 40.72 3.41
323 386 1.597663 GGACGTTGGTGTCAAACTCAG 59.402 52.381 0.00 0.00 40.72 3.35
324 387 2.546778 GACGTTGGTGTCAAACTCAGA 58.453 47.619 0.00 0.00 38.75 3.27
325 388 2.540101 GACGTTGGTGTCAAACTCAGAG 59.460 50.000 0.00 0.00 38.75 3.35
326 389 2.167693 ACGTTGGTGTCAAACTCAGAGA 59.832 45.455 3.79 0.00 34.28 3.10
327 390 3.181465 ACGTTGGTGTCAAACTCAGAGAT 60.181 43.478 3.79 0.00 34.28 2.75
328 391 3.185188 CGTTGGTGTCAAACTCAGAGATG 59.815 47.826 3.79 3.06 34.28 2.90
329 392 4.130118 GTTGGTGTCAAACTCAGAGATGT 58.870 43.478 3.79 0.00 34.28 3.06
330 393 4.422073 TGGTGTCAAACTCAGAGATGTT 57.578 40.909 3.79 0.00 0.00 2.71
331 394 4.380531 TGGTGTCAAACTCAGAGATGTTC 58.619 43.478 3.79 2.68 0.00 3.18
332 395 4.101585 TGGTGTCAAACTCAGAGATGTTCT 59.898 41.667 3.79 0.00 36.25 3.01
333 396 9.313314 GTTGGTGTCAAACTCAGAGATGTTCTG 62.313 44.444 3.79 0.00 43.33 3.02
363 426 6.976636 TTTTTCAGTTTTGTCATTTGGTCC 57.023 33.333 0.00 0.00 0.00 4.46
364 427 5.930837 TTTCAGTTTTGTCATTTGGTCCT 57.069 34.783 0.00 0.00 0.00 3.85
365 428 5.930837 TTCAGTTTTGTCATTTGGTCCTT 57.069 34.783 0.00 0.00 0.00 3.36
366 429 7.411486 TTTCAGTTTTGTCATTTGGTCCTTA 57.589 32.000 0.00 0.00 0.00 2.69
367 430 6.385649 TCAGTTTTGTCATTTGGTCCTTAC 57.614 37.500 0.00 0.00 0.00 2.34
368 431 5.008217 TCAGTTTTGTCATTTGGTCCTTACG 59.992 40.000 0.00 0.00 0.00 3.18
369 432 4.885325 AGTTTTGTCATTTGGTCCTTACGT 59.115 37.500 0.00 0.00 0.00 3.57
370 433 4.822036 TTTGTCATTTGGTCCTTACGTG 57.178 40.909 0.00 0.00 0.00 4.49
371 434 3.755112 TGTCATTTGGTCCTTACGTGA 57.245 42.857 0.00 0.00 0.00 4.35
372 435 3.395639 TGTCATTTGGTCCTTACGTGAC 58.604 45.455 0.00 0.00 36.09 3.67
373 436 3.070446 TGTCATTTGGTCCTTACGTGACT 59.930 43.478 0.00 0.00 36.40 3.41
374 437 4.062991 GTCATTTGGTCCTTACGTGACTT 58.937 43.478 0.00 0.00 33.57 3.01
375 438 4.062293 TCATTTGGTCCTTACGTGACTTG 58.938 43.478 0.00 0.00 33.22 3.16
376 439 3.547054 TTTGGTCCTTACGTGACTTGT 57.453 42.857 0.00 0.00 33.22 3.16
377 440 4.669206 TTTGGTCCTTACGTGACTTGTA 57.331 40.909 0.00 0.00 33.22 2.41
378 441 3.648339 TGGTCCTTACGTGACTTGTAC 57.352 47.619 0.00 0.00 33.22 2.90
379 442 3.225104 TGGTCCTTACGTGACTTGTACT 58.775 45.455 0.00 0.00 33.22 2.73
380 443 3.638160 TGGTCCTTACGTGACTTGTACTT 59.362 43.478 0.00 0.00 33.22 2.24
381 444 4.099881 TGGTCCTTACGTGACTTGTACTTT 59.900 41.667 0.00 0.00 33.22 2.66
382 445 4.446719 GGTCCTTACGTGACTTGTACTTTG 59.553 45.833 0.00 0.00 33.22 2.77
383 446 5.284079 GTCCTTACGTGACTTGTACTTTGA 58.716 41.667 0.00 0.00 0.00 2.69
384 447 5.924825 GTCCTTACGTGACTTGTACTTTGAT 59.075 40.000 0.00 0.00 0.00 2.57
385 448 6.423001 GTCCTTACGTGACTTGTACTTTGATT 59.577 38.462 0.00 0.00 0.00 2.57
386 449 6.987992 TCCTTACGTGACTTGTACTTTGATTT 59.012 34.615 0.00 0.00 0.00 2.17
387 450 7.496591 TCCTTACGTGACTTGTACTTTGATTTT 59.503 33.333 0.00 0.00 0.00 1.82
388 451 8.767085 CCTTACGTGACTTGTACTTTGATTTTA 58.233 33.333 0.00 0.00 0.00 1.52
391 454 8.373048 ACGTGACTTGTACTTTGATTTTATCA 57.627 30.769 0.00 0.00 37.55 2.15
392 455 8.999431 ACGTGACTTGTACTTTGATTTTATCAT 58.001 29.630 0.00 0.00 39.39 2.45
407 470 9.546428 TGATTTTATCATATGAATGAGACACGT 57.454 29.630 9.99 0.00 45.17 4.49
417 480 6.769608 TGAATGAGACACGTATTATCATGC 57.230 37.500 7.11 6.22 31.24 4.06
418 481 6.279882 TGAATGAGACACGTATTATCATGCA 58.720 36.000 9.55 9.55 34.30 3.96
419 482 6.760770 TGAATGAGACACGTATTATCATGCAA 59.239 34.615 10.74 0.00 33.87 4.08
420 483 7.279758 TGAATGAGACACGTATTATCATGCAAA 59.720 33.333 10.74 0.00 33.87 3.68
421 484 6.976636 TGAGACACGTATTATCATGCAAAA 57.023 33.333 0.00 0.00 0.00 2.44
422 485 7.371126 TGAGACACGTATTATCATGCAAAAA 57.629 32.000 0.00 0.00 0.00 1.94
442 505 1.861971 AAAAAGAGTCGGACGTGTCC 58.138 50.000 9.04 9.04 46.18 4.02
519 582 7.843490 TTTTAGAACTGAGAATTATCCACGG 57.157 36.000 0.00 0.00 0.00 4.94
520 583 6.785337 TTAGAACTGAGAATTATCCACGGA 57.215 37.500 0.00 0.00 0.00 4.69
521 584 5.012328 AGAACTGAGAATTATCCACGGAC 57.988 43.478 0.00 0.00 0.00 4.79
523 586 5.129485 AGAACTGAGAATTATCCACGGACAT 59.871 40.000 0.00 0.00 0.00 3.06
525 588 6.672266 ACTGAGAATTATCCACGGACATAT 57.328 37.500 0.00 0.00 0.00 1.78
526 589 6.459066 ACTGAGAATTATCCACGGACATATG 58.541 40.000 0.00 0.00 0.00 1.78
527 590 6.042093 ACTGAGAATTATCCACGGACATATGT 59.958 38.462 8.43 8.43 0.00 2.29
528 591 6.223120 TGAGAATTATCCACGGACATATGTG 58.777 40.000 14.43 2.00 35.87 3.21
534 597 2.959507 CACGGACATATGTGGAGTCA 57.040 50.000 14.43 0.00 34.04 3.41
535 598 2.540515 CACGGACATATGTGGAGTCAC 58.459 52.381 14.43 0.00 43.87 3.67
536 599 1.134367 ACGGACATATGTGGAGTCACG 59.866 52.381 14.43 8.38 46.42 4.35
576 639 3.818787 GGCCCTTGAGCGCACATG 61.819 66.667 11.47 12.24 0.00 3.21
604 668 1.530655 AAAAGAAGCCCACCACCCG 60.531 57.895 0.00 0.00 0.00 5.28
670 734 3.570212 ACGAGTTGCCCTTGCCCT 61.570 61.111 0.00 0.00 36.33 5.19
678 742 4.431131 CCCTTGCCCTCGTGCCAT 62.431 66.667 0.00 0.00 0.00 4.40
685 749 1.290324 CCCTCGTGCCATATCCTCG 59.710 63.158 0.00 0.00 0.00 4.63
753 817 4.479993 GCATCGCCTCCAGTGCCT 62.480 66.667 0.00 0.00 0.00 4.75
825 889 3.787001 GCCCGGGTCTTCCTCCAG 61.787 72.222 24.63 0.00 0.00 3.86
826 890 2.038975 CCCGGGTCTTCCTCCAGA 59.961 66.667 14.18 0.00 0.00 3.86
931 1018 1.837051 TTCTCCCTCGCGCCCATAT 60.837 57.895 0.00 0.00 0.00 1.78
946 1033 0.474184 CATATTTCCCCGCCCACTCT 59.526 55.000 0.00 0.00 0.00 3.24
994 1081 4.391869 GGTTTCCCGAACTCCACC 57.608 61.111 0.00 0.00 38.35 4.61
996 1083 1.452801 GTTTCCCGAACTCCACCCA 59.547 57.895 0.00 0.00 35.31 4.51
1022 1109 1.376037 CCCCAGAAAGGTGCGTCTC 60.376 63.158 0.00 0.00 34.66 3.36
1053 1146 8.192774 ACATTTGCTGTATGTATCATTCAAAGG 58.807 33.333 0.00 0.00 35.91 3.11
1058 1151 8.970020 TGCTGTATGTATCATTCAAAGGAAAAT 58.030 29.630 0.00 0.00 36.43 1.82
1076 1169 6.042143 GGAAAATGATAACATCGGTGCATTT 58.958 36.000 0.00 0.59 36.49 2.32
1080 1173 5.023826 ATGATAACATCGGTGCATTTTGCG 61.024 41.667 0.00 0.00 38.07 4.85
1105 1199 5.046591 TCAAATTGGATAGTTCTCTCGTGGT 60.047 40.000 0.00 0.00 0.00 4.16
1126 1220 5.719563 TGGTCATTGTCATACTGAAGGAGTA 59.280 40.000 0.00 0.00 41.57 2.59
1131 1225 7.334421 TCATTGTCATACTGAAGGAGTAAAAGC 59.666 37.037 0.00 0.00 40.67 3.51
1160 1254 3.772387 TCATTTTGTGCCAGTTATCCCA 58.228 40.909 0.00 0.00 0.00 4.37
1238 1333 1.389555 CACATCATGGCAGTGCATCT 58.610 50.000 18.61 0.00 0.00 2.90
1529 1624 2.426024 GTTGTACATCTCGTCCAGGCTA 59.574 50.000 0.00 0.00 0.00 3.93
1534 1629 0.955178 ATCTCGTCCAGGCTATGTCG 59.045 55.000 0.00 0.00 0.00 4.35
1578 1673 3.710326 GAAGCAAAGTTCGAAGGGTTT 57.290 42.857 0.00 0.00 0.00 3.27
1619 1714 3.607741 TGTCGGTGGTTTTCAGTTGTTA 58.392 40.909 0.00 0.00 0.00 2.41
1631 1726 8.547894 GGTTTTCAGTTGTTAATTTGGTTGATC 58.452 33.333 0.00 0.00 0.00 2.92
1901 1996 4.485834 CGCGTACACTAGCCGCCA 62.486 66.667 0.00 0.00 44.29 5.69
1958 2053 1.829533 GTGCCATGCCCGATTCCAT 60.830 57.895 0.00 0.00 0.00 3.41
2006 2101 4.498520 CGGCGGCATCGACTGAGT 62.499 66.667 10.53 0.00 43.49 3.41
2210 2315 4.459390 TGCATCATGATTTCTGGGTTTG 57.541 40.909 5.16 0.00 0.00 2.93
2450 2558 9.243637 TGTCTTAAATTCTTGTAATTGTGTTGC 57.756 29.630 0.00 0.00 0.00 4.17
2488 2596 3.697190 TCTCCTGAAGGCTCCTTATCT 57.303 47.619 0.38 0.00 36.26 1.98
2698 2924 7.621428 TTCTATATTATACTTCCTCCGTCCG 57.379 40.000 0.00 0.00 0.00 4.79
2699 2925 6.950842 TCTATATTATACTTCCTCCGTCCGA 58.049 40.000 0.00 0.00 0.00 4.55
2700 2926 7.397221 TCTATATTATACTTCCTCCGTCCGAA 58.603 38.462 0.00 0.00 0.00 4.30
2701 2927 6.906157 ATATTATACTTCCTCCGTCCGAAA 57.094 37.500 0.00 0.00 0.00 3.46
2702 2928 5.803237 ATTATACTTCCTCCGTCCGAAAT 57.197 39.130 0.00 0.00 0.00 2.17
2703 2929 5.603170 TTATACTTCCTCCGTCCGAAATT 57.397 39.130 0.00 0.00 0.00 1.82
2704 2930 6.713762 TTATACTTCCTCCGTCCGAAATTA 57.286 37.500 0.00 0.00 0.00 1.40
2705 2931 3.242549 ACTTCCTCCGTCCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
2706 2932 2.830321 ACTTCCTCCGTCCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
2707 2933 3.260128 ACTTCCTCCGTCCGAAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
2708 2934 3.241067 TCCTCCGTCCGAAATTACTTG 57.759 47.619 0.00 0.00 0.00 3.16
2709 2935 2.564062 TCCTCCGTCCGAAATTACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
2710 2936 3.007182 TCCTCCGTCCGAAATTACTTGTT 59.993 43.478 0.00 0.00 0.00 2.83
2711 2937 3.124636 CCTCCGTCCGAAATTACTTGTTG 59.875 47.826 0.00 0.00 0.00 3.33
2712 2938 3.991773 CTCCGTCCGAAATTACTTGTTGA 59.008 43.478 0.00 0.00 0.00 3.18
2713 2939 4.378774 TCCGTCCGAAATTACTTGTTGAA 58.621 39.130 0.00 0.00 0.00 2.69
2714 2940 4.449743 TCCGTCCGAAATTACTTGTTGAAG 59.550 41.667 0.00 0.00 35.07 3.02
2715 2941 4.449743 CCGTCCGAAATTACTTGTTGAAGA 59.550 41.667 0.00 0.00 32.98 2.87
2716 2942 5.049954 CCGTCCGAAATTACTTGTTGAAGAA 60.050 40.000 0.00 0.00 32.98 2.52
2717 2943 6.423862 CGTCCGAAATTACTTGTTGAAGAAA 58.576 36.000 0.00 0.00 32.98 2.52
2718 2944 7.075741 CGTCCGAAATTACTTGTTGAAGAAAT 58.924 34.615 0.00 0.00 32.98 2.17
2719 2945 7.059488 CGTCCGAAATTACTTGTTGAAGAAATG 59.941 37.037 0.00 0.00 32.98 2.32
2720 2946 7.326063 GTCCGAAATTACTTGTTGAAGAAATGG 59.674 37.037 0.00 0.00 32.98 3.16
2721 2947 7.229707 TCCGAAATTACTTGTTGAAGAAATGGA 59.770 33.333 0.00 0.00 32.98 3.41
2722 2948 8.028938 CCGAAATTACTTGTTGAAGAAATGGAT 58.971 33.333 0.00 0.00 32.98 3.41
2787 3013 5.049167 TGTTGAGCCATGCAGTTTAAAAAG 58.951 37.500 0.00 0.00 0.00 2.27
2903 3129 9.725019 TGGCAGATAACTGGTTAATATAATGAG 57.275 33.333 1.85 0.00 43.62 2.90
2946 3172 4.040217 TGGTTCTTTTGTTAGCCATGCAAT 59.960 37.500 0.00 0.00 0.00 3.56
3042 3268 4.943093 TGAATCGATTTGTCATGTCACCAT 59.057 37.500 12.81 0.00 0.00 3.55
3204 3441 8.990163 TCCAAACAAGGAAAAGTTACTTCTAT 57.010 30.769 0.00 0.00 33.93 1.98
3333 3570 1.067142 ACATGCGTAGTGTTCGGTGAT 60.067 47.619 0.00 0.00 0.00 3.06
3334 3571 2.164827 ACATGCGTAGTGTTCGGTGATA 59.835 45.455 0.00 0.00 0.00 2.15
3496 3733 6.246420 ACTGAACCTGATTCATTTTTCGAG 57.754 37.500 0.00 0.00 46.37 4.04
3501 3738 8.359642 TGAACCTGATTCATTTTTCGAGAAAAT 58.640 29.630 11.22 8.45 42.62 1.82
3511 3748 1.990799 TCGAGAAAATGCGACACGAT 58.009 45.000 0.00 0.00 0.00 3.73
3560 3797 3.761752 GGGAAGCTAAAAGTTACATGCCA 59.238 43.478 0.00 0.00 0.00 4.92
3713 3956 4.651503 ACTCATCGGTGTAGAGAATCCATT 59.348 41.667 0.00 0.00 33.66 3.16
3952 4198 5.592054 TGTTGTGTTTTCTTGTGTGTTCAA 58.408 33.333 0.00 0.00 0.00 2.69
4446 4714 0.179089 GACATCATGTCAGGCTCGCT 60.179 55.000 13.26 0.00 46.22 4.93
4454 4722 4.570772 TCATGTCAGGCTCGCTAATTAAAC 59.429 41.667 0.00 0.00 0.00 2.01
4502 4770 1.615392 ACAGAAAACTCTTGCATGGGC 59.385 47.619 0.00 0.00 41.68 5.36
4511 4779 1.211703 TCTTGCATGGGCGAAATAGGA 59.788 47.619 0.00 0.00 45.35 2.94
4616 4884 5.975939 GCTCACTACCCAAGTATAACTAACG 59.024 44.000 0.00 0.00 35.76 3.18
4819 5089 4.333926 GCCCTCTTTGACAAGCTAATACTG 59.666 45.833 0.00 0.00 0.00 2.74
4820 5090 4.878397 CCCTCTTTGACAAGCTAATACTGG 59.122 45.833 0.00 0.00 0.00 4.00
4894 5166 4.019174 GAGGGTCATTCACACATGGAATT 58.981 43.478 0.00 0.00 32.86 2.17
4935 5207 7.009179 TCTCCAGTTTAGTCACTTGATCATT 57.991 36.000 0.00 0.00 0.00 2.57
5081 5353 4.449068 CACGAGGCAAGCTATAAACATAGG 59.551 45.833 0.00 0.00 0.00 2.57
5133 5405 7.186128 CCATTGGCAAAACAAAGAAAAGTTAC 58.814 34.615 3.01 0.00 33.48 2.50
5142 5414 6.796705 ACAAAGAAAAGTTACCTACATCGG 57.203 37.500 0.00 0.00 0.00 4.18
5266 5547 1.696884 TGCTGATGGTGTTCTGGTACA 59.303 47.619 0.00 0.00 0.00 2.90
5267 5548 2.105649 TGCTGATGGTGTTCTGGTACAA 59.894 45.455 0.00 0.00 38.70 2.41
5570 5854 7.681939 TTCAATATACCCAACACAGAAGTTC 57.318 36.000 0.00 0.00 0.00 3.01
5617 5901 1.360393 TGGGTGTTGGAAAGAGGCCT 61.360 55.000 3.86 3.86 0.00 5.19
5661 5951 3.445805 GCCTCTAGCTGTCTACTGTCTTT 59.554 47.826 0.00 0.00 38.99 2.52
6001 6299 7.174946 TCAGTACCTTCTTTATTTTTCAGGCAG 59.825 37.037 0.00 0.00 0.00 4.85
6132 6430 3.026630 AGACGACGAATCTGCAAAGAA 57.973 42.857 0.00 0.00 0.00 2.52
6135 6433 1.783416 CGACGAATCTGCAAAGAACGC 60.783 52.381 0.00 0.00 0.00 4.84
6141 6439 1.795768 TCTGCAAAGAACGCGAAGAT 58.204 45.000 15.93 0.00 0.00 2.40
6166 6464 6.509523 TCTAGGAAGGACAAGAAAAGGAAA 57.490 37.500 0.00 0.00 0.00 3.13
6178 6482 9.639601 GACAAGAAAAGGAAAAAGAAGAAGAAA 57.360 29.630 0.00 0.00 0.00 2.52
6230 6540 6.804295 GGATATCTGATACTGCGAACTAACTG 59.196 42.308 2.05 0.00 0.00 3.16
6269 6583 5.220491 CGCAGCTACTTTTCTTATCTTGGTC 60.220 44.000 0.00 0.00 0.00 4.02
6326 6640 7.107639 AGTTGTAAAATTTTGCTACCAGTGT 57.892 32.000 22.53 7.78 31.40 3.55
6334 6648 4.630894 TTTGCTACCAGTGTGAGTTTTG 57.369 40.909 0.00 0.00 0.00 2.44
6404 6721 2.433604 TGCTTGCAAAATCACCCTGAAA 59.566 40.909 0.00 0.00 0.00 2.69
6408 6725 4.751767 TGCAAAATCACCCTGAAAGTTT 57.248 36.364 0.00 0.00 0.00 2.66
6417 6734 4.522789 TCACCCTGAAAGTTTGGATTTAGC 59.477 41.667 0.00 0.00 0.00 3.09
6460 6777 1.404047 GCGATTCCATGTGTTTTGGGG 60.404 52.381 0.00 0.00 34.85 4.96
6510 6828 9.658799 TTTTTAGAGATTTGAGGTGTAGATCTG 57.341 33.333 5.18 0.00 0.00 2.90
6518 6836 4.556233 TGAGGTGTAGATCTGTTTTGTCG 58.444 43.478 5.18 0.00 0.00 4.35
6521 6839 3.120649 GGTGTAGATCTGTTTTGTCGCAC 60.121 47.826 5.18 1.04 0.00 5.34
6524 6842 2.838736 AGATCTGTTTTGTCGCACTGT 58.161 42.857 0.00 0.00 0.00 3.55
6527 6853 3.936902 TCTGTTTTGTCGCACTGTTAC 57.063 42.857 0.00 0.00 0.00 2.50
6532 6858 4.201773 TGTTTTGTCGCACTGTTACTTCTG 60.202 41.667 0.00 0.00 0.00 3.02
6536 6862 3.181479 TGTCGCACTGTTACTTCTGTTCT 60.181 43.478 0.00 0.00 0.00 3.01
6546 6872 5.827797 TGTTACTTCTGTTCTGGCAATCTTT 59.172 36.000 0.00 0.00 0.00 2.52
6547 6873 6.995686 TGTTACTTCTGTTCTGGCAATCTTTA 59.004 34.615 0.00 0.00 0.00 1.85
6548 6874 5.948992 ACTTCTGTTCTGGCAATCTTTAC 57.051 39.130 0.00 0.00 0.00 2.01
6549 6875 5.376625 ACTTCTGTTCTGGCAATCTTTACA 58.623 37.500 0.00 0.00 0.00 2.41
6550 6876 5.471456 ACTTCTGTTCTGGCAATCTTTACAG 59.529 40.000 0.00 0.00 34.38 2.74
6551 6877 4.973168 TCTGTTCTGGCAATCTTTACAGT 58.027 39.130 0.00 0.00 34.62 3.55
6552 6878 6.109156 TCTGTTCTGGCAATCTTTACAGTA 57.891 37.500 0.00 0.00 34.62 2.74
6553 6879 5.932303 TCTGTTCTGGCAATCTTTACAGTAC 59.068 40.000 0.00 0.00 34.62 2.73
6554 6880 5.865085 TGTTCTGGCAATCTTTACAGTACT 58.135 37.500 0.00 0.00 33.93 2.73
6577 6903 3.782656 ATACCCAACGAAGTCTGGTTT 57.217 42.857 0.00 0.00 45.00 3.27
6583 6909 1.213094 ACGAAGTCTGGTTTGACGCG 61.213 55.000 3.53 3.53 29.74 6.01
6595 6921 2.363788 TTGACGCGTGCTAGAGAAAT 57.636 45.000 20.70 0.00 0.00 2.17
6611 6938 8.697292 GCTAGAGAAATAAGGAAGGACTTCTTA 58.303 37.037 11.46 8.55 39.45 2.10
6631 6959 7.630242 TCTTAATGAAGAGGCAAATGTTAGG 57.370 36.000 0.00 0.00 36.75 2.69
6667 6996 0.247736 CCAGAGTGCTAGTCCACCAC 59.752 60.000 0.00 0.00 36.38 4.16
6816 7150 7.176165 ACCAAGGCAGGAAAAACTTATAAGTAC 59.824 37.037 18.31 10.11 38.57 2.73
7045 7381 4.950205 CCCGTATTAGTAAGTGGGTGAT 57.050 45.455 8.17 0.00 31.82 3.06
7090 7426 7.119699 CAGACATTTACATTTCTGCCTCTAACA 59.880 37.037 0.00 0.00 31.86 2.41
7091 7427 7.335422 AGACATTTACATTTCTGCCTCTAACAG 59.665 37.037 0.00 0.00 36.44 3.16
7146 7482 4.154015 CGATTGTGCTCAGTTTTGTCCATA 59.846 41.667 0.00 0.00 0.00 2.74
7176 7512 8.333235 TGTCAAATGACCTTATGTAAATACCCT 58.667 33.333 10.83 0.00 44.15 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.493708 CGCATGCTGATCTAGAAGTTGTTG 60.494 45.833 17.13 0.00 0.00 3.33
2 3 3.193263 CGCATGCTGATCTAGAAGTTGT 58.807 45.455 17.13 0.00 0.00 3.32
5 6 1.137675 TGCGCATGCTGATCTAGAAGT 59.862 47.619 17.13 0.00 43.34 3.01
6 7 1.526041 GTGCGCATGCTGATCTAGAAG 59.474 52.381 15.91 0.00 43.34 2.85
7 8 1.575244 GTGCGCATGCTGATCTAGAA 58.425 50.000 15.91 0.00 43.34 2.10
8 9 0.595825 CGTGCGCATGCTGATCTAGA 60.596 55.000 18.03 0.00 43.34 2.43
9 10 0.873312 ACGTGCGCATGCTGATCTAG 60.873 55.000 28.93 0.00 43.34 2.43
10 11 1.141665 ACGTGCGCATGCTGATCTA 59.858 52.632 28.93 0.00 43.34 1.98
11 12 2.125391 ACGTGCGCATGCTGATCT 60.125 55.556 28.93 5.89 43.34 2.75
12 13 2.022346 CACGTGCGCATGCTGATC 59.978 61.111 28.93 5.63 43.34 2.92
13 14 4.170062 GCACGTGCGCATGCTGAT 62.170 61.111 28.93 7.11 43.34 2.90
15 16 4.686722 TTGCACGTGCGCATGCTG 62.687 61.111 33.22 25.03 45.83 4.41
16 17 4.688419 GTTGCACGTGCGCATGCT 62.688 61.111 33.22 16.06 45.83 3.79
17 18 4.688419 AGTTGCACGTGCGCATGC 62.688 61.111 33.22 26.96 45.83 4.06
18 19 2.517391 ATCAGTTGCACGTGCGCATG 62.517 55.000 33.22 28.25 45.83 4.06
19 20 2.244436 GATCAGTTGCACGTGCGCAT 62.244 55.000 33.22 20.04 45.83 4.73
20 21 2.953605 GATCAGTTGCACGTGCGCA 61.954 57.895 33.22 21.10 45.83 6.09
21 22 2.202222 GATCAGTTGCACGTGCGC 60.202 61.111 33.22 27.24 45.83 6.09
22 23 0.166597 ATTGATCAGTTGCACGTGCG 59.833 50.000 33.22 20.13 45.83 5.34
23 24 1.197492 TCATTGATCAGTTGCACGTGC 59.803 47.619 33.11 33.11 42.50 5.34
24 25 3.752412 ATCATTGATCAGTTGCACGTG 57.248 42.857 12.28 12.28 0.00 4.49
25 26 4.771590 AAATCATTGATCAGTTGCACGT 57.228 36.364 0.00 0.00 0.00 4.49
26 27 4.919168 ACAAAATCATTGATCAGTTGCACG 59.081 37.500 13.49 0.00 0.00 5.34
27 28 5.119588 CCACAAAATCATTGATCAGTTGCAC 59.880 40.000 13.49 0.00 0.00 4.57
28 29 5.010820 TCCACAAAATCATTGATCAGTTGCA 59.989 36.000 13.49 0.00 0.00 4.08
29 30 5.472148 TCCACAAAATCATTGATCAGTTGC 58.528 37.500 13.49 0.00 0.00 4.17
30 31 5.575606 GCTCCACAAAATCATTGATCAGTTG 59.424 40.000 0.00 7.65 0.00 3.16
31 32 5.244402 TGCTCCACAAAATCATTGATCAGTT 59.756 36.000 0.00 0.00 0.00 3.16
32 33 4.768448 TGCTCCACAAAATCATTGATCAGT 59.232 37.500 0.00 0.00 0.00 3.41
33 34 5.319140 TGCTCCACAAAATCATTGATCAG 57.681 39.130 0.00 0.00 0.00 2.90
34 35 5.925506 ATGCTCCACAAAATCATTGATCA 57.074 34.783 0.00 0.00 0.00 2.92
35 36 7.431249 ACATATGCTCCACAAAATCATTGATC 58.569 34.615 1.58 0.00 0.00 2.92
36 37 7.356089 ACATATGCTCCACAAAATCATTGAT 57.644 32.000 1.58 0.00 0.00 2.57
37 38 6.778834 ACATATGCTCCACAAAATCATTGA 57.221 33.333 1.58 0.00 0.00 2.57
44 45 9.791801 ACATGTATATACATATGCTCCACAAAA 57.208 29.630 24.50 0.00 44.57 2.44
45 46 9.791801 AACATGTATATACATATGCTCCACAAA 57.208 29.630 24.50 0.00 44.57 2.83
46 47 9.218440 CAACATGTATATACATATGCTCCACAA 57.782 33.333 24.50 0.00 44.57 3.33
47 48 8.592809 TCAACATGTATATACATATGCTCCACA 58.407 33.333 24.50 9.60 44.57 4.17
48 49 9.091784 CTCAACATGTATATACATATGCTCCAC 57.908 37.037 24.50 0.00 44.57 4.02
49 50 7.765819 GCTCAACATGTATATACATATGCTCCA 59.234 37.037 24.50 11.63 44.57 3.86
50 51 7.765819 TGCTCAACATGTATATACATATGCTCC 59.234 37.037 24.50 16.74 44.57 4.70
51 52 8.707938 TGCTCAACATGTATATACATATGCTC 57.292 34.615 24.50 18.85 44.57 4.26
52 53 9.676861 AATGCTCAACATGTATATACATATGCT 57.323 29.630 24.50 7.20 44.57 3.79
61 62 9.006839 CACCAATCTAATGCTCAACATGTATAT 57.993 33.333 0.00 0.00 39.60 0.86
62 63 8.210265 TCACCAATCTAATGCTCAACATGTATA 58.790 33.333 0.00 0.00 39.60 1.47
63 64 7.056006 TCACCAATCTAATGCTCAACATGTAT 58.944 34.615 0.00 0.00 39.60 2.29
64 65 6.413892 TCACCAATCTAATGCTCAACATGTA 58.586 36.000 0.00 0.00 39.60 2.29
65 66 5.255687 TCACCAATCTAATGCTCAACATGT 58.744 37.500 0.00 0.00 39.60 3.21
66 67 5.823209 TCACCAATCTAATGCTCAACATG 57.177 39.130 0.00 0.00 39.60 3.21
67 68 5.889853 ACATCACCAATCTAATGCTCAACAT 59.110 36.000 0.00 0.00 42.30 2.71
68 69 5.255687 ACATCACCAATCTAATGCTCAACA 58.744 37.500 0.00 0.00 0.00 3.33
69 70 5.824904 ACATCACCAATCTAATGCTCAAC 57.175 39.130 0.00 0.00 0.00 3.18
70 71 5.711506 ACAACATCACCAATCTAATGCTCAA 59.288 36.000 0.00 0.00 0.00 3.02
71 72 5.255687 ACAACATCACCAATCTAATGCTCA 58.744 37.500 0.00 0.00 0.00 4.26
72 73 5.824904 ACAACATCACCAATCTAATGCTC 57.175 39.130 0.00 0.00 0.00 4.26
73 74 7.886629 AATACAACATCACCAATCTAATGCT 57.113 32.000 0.00 0.00 0.00 3.79
188 189 2.903798 TGCACGATACATCATTCAGCA 58.096 42.857 0.00 0.00 0.00 4.41
199 201 8.443898 TTCTACGTATATTTCATGCACGATAC 57.556 34.615 0.00 0.00 36.51 2.24
202 204 7.650104 TCATTTCTACGTATATTTCATGCACGA 59.350 33.333 0.00 0.00 36.51 4.35
203 205 7.783209 TCATTTCTACGTATATTTCATGCACG 58.217 34.615 0.00 0.00 38.52 5.34
214 216 6.349115 GCTCGGGAATCTCATTTCTACGTATA 60.349 42.308 0.00 0.00 32.17 1.47
267 330 4.624364 CACCACAGCAGCCACCGA 62.624 66.667 0.00 0.00 0.00 4.69
269 332 4.586235 ACCACCACAGCAGCCACC 62.586 66.667 0.00 0.00 0.00 4.61
270 333 3.289834 CACCACCACAGCAGCCAC 61.290 66.667 0.00 0.00 0.00 5.01
277 340 4.704833 CCTCCGGCACCACCACAG 62.705 72.222 0.00 0.00 39.03 3.66
288 351 3.083349 TCCATCACCTGCCTCCGG 61.083 66.667 0.00 0.00 0.00 5.14
289 352 2.187946 GTCCATCACCTGCCTCCG 59.812 66.667 0.00 0.00 0.00 4.63
290 353 2.185310 AACGTCCATCACCTGCCTCC 62.185 60.000 0.00 0.00 0.00 4.30
291 354 1.021390 CAACGTCCATCACCTGCCTC 61.021 60.000 0.00 0.00 0.00 4.70
292 355 1.003355 CAACGTCCATCACCTGCCT 60.003 57.895 0.00 0.00 0.00 4.75
293 356 2.040544 CCAACGTCCATCACCTGCC 61.041 63.158 0.00 0.00 0.00 4.85
294 357 1.302511 ACCAACGTCCATCACCTGC 60.303 57.895 0.00 0.00 0.00 4.85
295 358 0.250295 ACACCAACGTCCATCACCTG 60.250 55.000 0.00 0.00 0.00 4.00
296 359 0.034896 GACACCAACGTCCATCACCT 59.965 55.000 0.00 0.00 0.00 4.00
297 360 0.250124 TGACACCAACGTCCATCACC 60.250 55.000 0.00 0.00 34.88 4.02
298 361 1.588674 TTGACACCAACGTCCATCAC 58.411 50.000 0.00 0.00 34.88 3.06
299 362 1.944024 GTTTGACACCAACGTCCATCA 59.056 47.619 0.00 0.00 34.88 3.07
300 363 2.218603 AGTTTGACACCAACGTCCATC 58.781 47.619 0.00 0.00 34.88 3.51
301 364 2.218603 GAGTTTGACACCAACGTCCAT 58.781 47.619 0.00 0.00 34.88 3.41
302 365 1.066071 TGAGTTTGACACCAACGTCCA 60.066 47.619 0.00 0.00 34.88 4.02
303 366 1.597663 CTGAGTTTGACACCAACGTCC 59.402 52.381 0.00 0.00 34.88 4.79
304 367 2.540101 CTCTGAGTTTGACACCAACGTC 59.460 50.000 0.00 0.00 36.40 4.34
305 368 2.167693 TCTCTGAGTTTGACACCAACGT 59.832 45.455 4.32 0.00 30.88 3.99
306 369 2.821546 TCTCTGAGTTTGACACCAACG 58.178 47.619 4.32 0.00 30.88 4.10
307 370 4.130118 ACATCTCTGAGTTTGACACCAAC 58.870 43.478 14.28 0.00 30.88 3.77
308 371 4.422073 ACATCTCTGAGTTTGACACCAA 57.578 40.909 14.28 0.00 0.00 3.67
309 372 4.101585 AGAACATCTCTGAGTTTGACACCA 59.898 41.667 14.28 0.00 31.12 4.17
310 373 4.636249 AGAACATCTCTGAGTTTGACACC 58.364 43.478 14.28 4.12 31.12 4.16
340 403 6.706295 AGGACCAAATGACAAAACTGAAAAA 58.294 32.000 0.00 0.00 0.00 1.94
341 404 6.293004 AGGACCAAATGACAAAACTGAAAA 57.707 33.333 0.00 0.00 0.00 2.29
342 405 5.930837 AGGACCAAATGACAAAACTGAAA 57.069 34.783 0.00 0.00 0.00 2.69
343 406 5.930837 AAGGACCAAATGACAAAACTGAA 57.069 34.783 0.00 0.00 0.00 3.02
344 407 5.008217 CGTAAGGACCAAATGACAAAACTGA 59.992 40.000 0.00 0.00 0.00 3.41
345 408 5.212194 CGTAAGGACCAAATGACAAAACTG 58.788 41.667 0.00 0.00 0.00 3.16
346 409 4.885325 ACGTAAGGACCAAATGACAAAACT 59.115 37.500 0.00 0.00 46.39 2.66
347 410 4.973663 CACGTAAGGACCAAATGACAAAAC 59.026 41.667 0.00 0.00 46.39 2.43
348 411 4.882427 TCACGTAAGGACCAAATGACAAAA 59.118 37.500 0.00 0.00 46.39 2.44
349 412 4.273969 GTCACGTAAGGACCAAATGACAAA 59.726 41.667 0.00 0.00 46.39 2.83
350 413 3.810941 GTCACGTAAGGACCAAATGACAA 59.189 43.478 0.00 0.00 46.39 3.18
351 414 3.070446 AGTCACGTAAGGACCAAATGACA 59.930 43.478 13.52 0.00 46.39 3.58
352 415 3.660865 AGTCACGTAAGGACCAAATGAC 58.339 45.455 0.00 0.41 46.39 3.06
353 416 4.062293 CAAGTCACGTAAGGACCAAATGA 58.938 43.478 0.00 0.00 46.39 2.57
354 417 3.813166 ACAAGTCACGTAAGGACCAAATG 59.187 43.478 0.00 0.13 46.39 2.32
355 418 4.081322 ACAAGTCACGTAAGGACCAAAT 57.919 40.909 0.00 0.00 46.39 2.32
356 419 3.547054 ACAAGTCACGTAAGGACCAAA 57.453 42.857 0.00 0.00 46.39 3.28
357 420 3.638160 AGTACAAGTCACGTAAGGACCAA 59.362 43.478 0.00 0.00 46.39 3.67
358 421 3.225104 AGTACAAGTCACGTAAGGACCA 58.775 45.455 0.00 0.00 46.39 4.02
359 422 3.930634 AGTACAAGTCACGTAAGGACC 57.069 47.619 0.00 0.00 46.39 4.46
360 423 5.284079 TCAAAGTACAAGTCACGTAAGGAC 58.716 41.667 0.00 0.00 46.39 3.85
361 424 5.518848 TCAAAGTACAAGTCACGTAAGGA 57.481 39.130 0.00 0.00 46.39 3.36
362 425 6.780706 AATCAAAGTACAAGTCACGTAAGG 57.219 37.500 0.00 0.00 46.39 2.69
365 428 9.478768 TGATAAAATCAAAGTACAAGTCACGTA 57.521 29.630 0.00 0.00 36.11 3.57
366 429 8.373048 TGATAAAATCAAAGTACAAGTCACGT 57.627 30.769 0.00 0.00 36.11 4.49
381 444 9.546428 ACGTGTCTCATTCATATGATAAAATCA 57.454 29.630 6.17 0.72 44.55 2.57
391 454 9.091784 GCATGATAATACGTGTCTCATTCATAT 57.908 33.333 0.00 0.00 0.00 1.78
392 455 8.087750 TGCATGATAATACGTGTCTCATTCATA 58.912 33.333 0.00 0.00 0.00 2.15
393 456 6.930722 TGCATGATAATACGTGTCTCATTCAT 59.069 34.615 0.00 0.00 0.00 2.57
394 457 6.279882 TGCATGATAATACGTGTCTCATTCA 58.720 36.000 0.00 2.38 0.00 2.57
395 458 6.769608 TGCATGATAATACGTGTCTCATTC 57.230 37.500 0.00 0.00 0.00 2.67
396 459 7.552458 TTTGCATGATAATACGTGTCTCATT 57.448 32.000 0.00 0.00 0.00 2.57
397 460 7.552458 TTTTGCATGATAATACGTGTCTCAT 57.448 32.000 0.00 1.25 0.00 2.90
398 461 6.976636 TTTTGCATGATAATACGTGTCTCA 57.023 33.333 0.00 0.00 0.00 3.27
423 486 1.861971 GGACACGTCCGACTCTTTTT 58.138 50.000 0.00 0.00 40.36 1.94
424 487 3.582743 GGACACGTCCGACTCTTTT 57.417 52.632 0.00 0.00 40.36 2.27
455 518 5.631512 CGTGGACACAACTCAAAAAGAAAAA 59.368 36.000 3.12 0.00 0.00 1.94
456 519 5.048643 TCGTGGACACAACTCAAAAAGAAAA 60.049 36.000 3.12 0.00 0.00 2.29
457 520 4.456222 TCGTGGACACAACTCAAAAAGAAA 59.544 37.500 3.12 0.00 0.00 2.52
458 521 4.004314 TCGTGGACACAACTCAAAAAGAA 58.996 39.130 3.12 0.00 0.00 2.52
459 522 3.601435 TCGTGGACACAACTCAAAAAGA 58.399 40.909 3.12 0.00 0.00 2.52
460 523 4.095610 GTTCGTGGACACAACTCAAAAAG 58.904 43.478 3.12 0.00 0.00 2.27
461 524 3.502595 TGTTCGTGGACACAACTCAAAAA 59.497 39.130 14.27 0.00 0.00 1.94
462 525 3.075148 TGTTCGTGGACACAACTCAAAA 58.925 40.909 14.27 0.00 0.00 2.44
463 526 2.701107 TGTTCGTGGACACAACTCAAA 58.299 42.857 14.27 0.00 0.00 2.69
464 527 2.388310 TGTTCGTGGACACAACTCAA 57.612 45.000 14.27 0.00 0.00 3.02
465 528 2.613026 ATGTTCGTGGACACAACTCA 57.387 45.000 14.27 4.97 31.30 3.41
466 529 3.994392 ACATATGTTCGTGGACACAACTC 59.006 43.478 1.41 0.70 31.30 3.01
467 530 4.002906 ACATATGTTCGTGGACACAACT 57.997 40.909 1.41 6.91 31.30 3.16
468 531 4.742438 AACATATGTTCGTGGACACAAC 57.258 40.909 15.47 6.95 31.64 3.32
469 532 5.759506 AAAACATATGTTCGTGGACACAA 57.240 34.783 21.02 0.00 37.25 3.33
470 533 5.759506 AAAAACATATGTTCGTGGACACA 57.240 34.783 21.02 0.00 37.25 3.72
496 559 7.039882 GTCCGTGGATAATTCTCAGTTCTAAA 58.960 38.462 0.00 0.00 0.00 1.85
497 560 6.153851 TGTCCGTGGATAATTCTCAGTTCTAA 59.846 38.462 0.00 0.00 0.00 2.10
498 561 5.655090 TGTCCGTGGATAATTCTCAGTTCTA 59.345 40.000 0.00 0.00 0.00 2.10
499 562 4.466370 TGTCCGTGGATAATTCTCAGTTCT 59.534 41.667 0.00 0.00 0.00 3.01
500 563 4.755411 TGTCCGTGGATAATTCTCAGTTC 58.245 43.478 0.00 0.00 0.00 3.01
501 564 4.819105 TGTCCGTGGATAATTCTCAGTT 57.181 40.909 0.00 0.00 0.00 3.16
502 565 6.042093 ACATATGTCCGTGGATAATTCTCAGT 59.958 38.462 1.41 0.00 0.00 3.41
503 566 6.367149 CACATATGTCCGTGGATAATTCTCAG 59.633 42.308 5.07 0.00 0.00 3.35
504 567 6.223120 CACATATGTCCGTGGATAATTCTCA 58.777 40.000 5.07 0.00 0.00 3.27
505 568 6.712241 CACATATGTCCGTGGATAATTCTC 57.288 41.667 5.07 0.00 0.00 2.87
515 578 2.540515 GTGACTCCACATATGTCCGTG 58.459 52.381 5.07 2.95 42.72 4.94
516 579 1.134367 CGTGACTCCACATATGTCCGT 59.866 52.381 5.07 3.16 43.34 4.69
517 580 1.134367 ACGTGACTCCACATATGTCCG 59.866 52.381 5.07 0.00 43.34 4.79
519 582 3.797256 GCTAACGTGACTCCACATATGTC 59.203 47.826 5.07 0.00 43.34 3.06
520 583 3.430374 GGCTAACGTGACTCCACATATGT 60.430 47.826 1.41 1.41 43.34 2.29
521 584 3.123804 GGCTAACGTGACTCCACATATG 58.876 50.000 0.00 0.00 43.34 1.78
523 586 1.479323 GGGCTAACGTGACTCCACATA 59.521 52.381 0.00 0.00 43.34 2.29
525 588 1.116536 TGGGCTAACGTGACTCCACA 61.117 55.000 0.00 0.00 43.34 4.17
526 589 0.034337 TTGGGCTAACGTGACTCCAC 59.966 55.000 0.00 0.00 39.86 4.02
527 590 0.981183 ATTGGGCTAACGTGACTCCA 59.019 50.000 0.00 0.00 0.00 3.86
528 591 1.653151 GATTGGGCTAACGTGACTCC 58.347 55.000 0.00 0.00 0.00 3.85
529 592 1.207329 AGGATTGGGCTAACGTGACTC 59.793 52.381 0.00 0.00 0.00 3.36
531 594 1.066430 TGAGGATTGGGCTAACGTGAC 60.066 52.381 0.00 0.00 0.00 3.67
532 595 1.271856 TGAGGATTGGGCTAACGTGA 58.728 50.000 0.00 0.00 0.00 4.35
533 596 2.332063 ATGAGGATTGGGCTAACGTG 57.668 50.000 0.00 0.00 0.00 4.49
534 597 4.497291 TTAATGAGGATTGGGCTAACGT 57.503 40.909 0.00 0.00 0.00 3.99
535 598 5.063204 TGATTAATGAGGATTGGGCTAACG 58.937 41.667 0.00 0.00 0.00 3.18
536 599 5.474876 CCTGATTAATGAGGATTGGGCTAAC 59.525 44.000 15.31 0.00 32.39 2.34
576 639 2.301583 TGGGCTTCTTTTGGGTATTTGC 59.698 45.455 0.00 0.00 0.00 3.68
670 734 1.067060 CTCAACGAGGATATGGCACGA 59.933 52.381 0.00 0.00 0.00 4.35
753 817 2.261671 GAAGAAGAGGTCGCGCCA 59.738 61.111 19.30 0.00 40.61 5.69
814 878 2.579738 GGCGGTCTGGAGGAAGAC 59.420 66.667 0.00 0.00 44.91 3.01
890 976 1.375140 CGATGGTGTCAGCAGCTGT 60.375 57.895 22.10 0.97 43.05 4.40
931 1018 3.327404 GGAGAGTGGGCGGGGAAA 61.327 66.667 0.00 0.00 0.00 3.13
965 1052 0.391793 GGGAAACCGAGCTGGAAGAG 60.392 60.000 8.91 0.00 43.64 2.85
994 1081 1.229145 TTTCTGGGGCCATGGTTGG 60.229 57.895 14.67 0.00 46.66 3.77
996 1083 1.079073 CCTTTCTGGGGCCATGGTT 59.921 57.895 14.67 0.00 0.00 3.67
1053 1146 7.393327 CAAAATGCACCGATGTTATCATTTTC 58.607 34.615 3.62 0.00 40.18 2.29
1058 1151 3.730362 CGCAAAATGCACCGATGTTATCA 60.730 43.478 2.99 0.00 45.36 2.15
1063 1156 0.109781 GACGCAAAATGCACCGATGT 60.110 50.000 2.99 0.00 45.36 3.06
1067 1160 1.417372 ATTTGACGCAAAATGCACCG 58.583 45.000 8.65 0.00 45.36 4.94
1076 1169 5.245531 AGAGAACTATCCAATTTGACGCAA 58.754 37.500 0.00 0.00 0.00 4.85
1080 1173 5.292101 CCACGAGAGAACTATCCAATTTGAC 59.708 44.000 0.00 0.00 0.00 3.18
1126 1220 2.372837 ACAAAATGATGCCCCTGCTTTT 59.627 40.909 0.00 0.00 38.71 2.27
1131 1225 3.446507 GCACAAAATGATGCCCCTG 57.553 52.632 0.00 0.00 35.73 4.45
1343 1438 2.706339 AGAAGGGCAATCTAGCACAG 57.294 50.000 0.00 0.00 41.46 3.66
1347 1442 6.951062 AAATTTCTAGAAGGGCAATCTAGC 57.049 37.500 16.65 0.00 43.92 3.42
1529 1624 2.020720 CTAGTGCAGAGAGGACGACAT 58.979 52.381 0.00 0.00 44.28 3.06
1534 1629 1.032657 TCGGCTAGTGCAGAGAGGAC 61.033 60.000 0.00 0.00 38.41 3.85
1555 1650 0.517316 CCTTCGAACTTTGCTTCGGG 59.483 55.000 6.05 0.00 42.73 5.14
1598 1693 2.116827 ACAACTGAAAACCACCGACA 57.883 45.000 0.00 0.00 0.00 4.35
1601 1696 5.233263 CCAAATTAACAACTGAAAACCACCG 59.767 40.000 0.00 0.00 0.00 4.94
1656 1751 0.535780 CAGCAACTTCAGCACCTCCA 60.536 55.000 0.00 0.00 0.00 3.86
1876 1971 1.836555 GCTAGTGTACGCGAGTTAACG 59.163 52.381 15.93 0.00 46.40 3.18
1918 2013 4.393062 ACAGCAGTGGTTTATCAGAAATCG 59.607 41.667 0.00 0.00 0.00 3.34
2006 2101 5.420725 ACAGAACATACATTGCAGGACTA 57.579 39.130 0.00 0.00 0.00 2.59
2150 2245 4.039357 CGTCGGAGGTCGCAGTGT 62.039 66.667 0.00 0.00 39.05 3.55
2295 2403 6.274157 TCTTCATCTTTCTAGTCACCAGTC 57.726 41.667 0.00 0.00 0.00 3.51
2384 2492 7.308435 CAAGAAAGGGTTCAGATGAATAACAC 58.692 38.462 0.00 0.00 36.09 3.32
2450 2558 3.426695 GGAGAACACAGCAATCAAATCCG 60.427 47.826 0.00 0.00 0.00 4.18
2488 2596 9.171877 ACTCCTGCAAACATTTAAATTTTCAAA 57.828 25.926 0.00 0.00 0.00 2.69
2686 2912 3.521947 AGTAATTTCGGACGGAGGAAG 57.478 47.619 0.00 0.00 0.00 3.46
2687 2913 3.007182 ACAAGTAATTTCGGACGGAGGAA 59.993 43.478 0.00 0.00 0.00 3.36
2688 2914 2.564062 ACAAGTAATTTCGGACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
2689 2915 2.968675 ACAAGTAATTTCGGACGGAGG 58.031 47.619 0.00 0.00 0.00 4.30
2690 2916 3.991773 TCAACAAGTAATTTCGGACGGAG 59.008 43.478 0.00 0.00 0.00 4.63
2691 2917 3.992643 TCAACAAGTAATTTCGGACGGA 58.007 40.909 0.00 0.00 0.00 4.69
2692 2918 4.449743 TCTTCAACAAGTAATTTCGGACGG 59.550 41.667 0.00 0.00 0.00 4.79
2693 2919 5.585500 TCTTCAACAAGTAATTTCGGACG 57.415 39.130 0.00 0.00 0.00 4.79
2694 2920 7.326063 CCATTTCTTCAACAAGTAATTTCGGAC 59.674 37.037 0.00 0.00 29.59 4.79
2695 2921 7.229707 TCCATTTCTTCAACAAGTAATTTCGGA 59.770 33.333 0.00 0.00 29.59 4.55
2696 2922 7.367285 TCCATTTCTTCAACAAGTAATTTCGG 58.633 34.615 0.00 0.00 29.59 4.30
2697 2923 8.970691 ATCCATTTCTTCAACAAGTAATTTCG 57.029 30.769 0.00 0.00 29.59 3.46
2736 2962 9.701098 ACAACAATGACGTATTTTAGTTCTAGA 57.299 29.630 0.00 0.00 0.00 2.43
2737 2963 9.741168 CACAACAATGACGTATTTTAGTTCTAG 57.259 33.333 0.00 0.00 0.00 2.43
2738 2964 9.263538 ACACAACAATGACGTATTTTAGTTCTA 57.736 29.630 0.00 0.00 0.00 2.10
2739 2965 8.067784 CACACAACAATGACGTATTTTAGTTCT 58.932 33.333 0.00 0.00 0.00 3.01
2740 2966 7.853929 ACACACAACAATGACGTATTTTAGTTC 59.146 33.333 0.00 0.00 0.00 3.01
2741 2967 7.699566 ACACACAACAATGACGTATTTTAGTT 58.300 30.769 0.00 0.00 0.00 2.24
2742 2968 7.254227 ACACACAACAATGACGTATTTTAGT 57.746 32.000 0.00 0.00 0.00 2.24
2743 2969 7.853437 TCAACACACAACAATGACGTATTTTAG 59.147 33.333 0.00 0.00 0.00 1.85
2744 2970 7.694886 TCAACACACAACAATGACGTATTTTA 58.305 30.769 0.00 0.00 0.00 1.52
2745 2971 6.556212 TCAACACACAACAATGACGTATTTT 58.444 32.000 0.00 0.00 0.00 1.82
2746 2972 6.125327 TCAACACACAACAATGACGTATTT 57.875 33.333 0.00 0.00 0.00 1.40
2747 2973 5.743026 TCAACACACAACAATGACGTATT 57.257 34.783 0.00 0.00 0.00 1.89
2748 2974 4.319477 GCTCAACACACAACAATGACGTAT 60.319 41.667 0.00 0.00 0.00 3.06
2749 2975 3.001838 GCTCAACACACAACAATGACGTA 59.998 43.478 0.00 0.00 0.00 3.57
2750 2976 2.223249 GCTCAACACACAACAATGACGT 60.223 45.455 0.00 0.00 0.00 4.34
2751 2977 2.375110 GCTCAACACACAACAATGACG 58.625 47.619 0.00 0.00 0.00 4.35
2752 2978 2.098934 TGGCTCAACACACAACAATGAC 59.901 45.455 0.00 0.00 0.00 3.06
2753 2979 2.373224 TGGCTCAACACACAACAATGA 58.627 42.857 0.00 0.00 0.00 2.57
2787 3013 5.352569 CAGACAATTACCATCACCTTGAGTC 59.647 44.000 0.00 0.00 0.00 3.36
2903 3129 7.603784 AGAACCAATATTTCTTGCAACAATTCC 59.396 33.333 0.00 0.00 28.36 3.01
2981 3207 4.628766 CACACATGAATGATCGAAGTGAGT 59.371 41.667 0.00 0.00 32.16 3.41
3097 3325 5.098211 GCATTGCTAGGTGTTTGATTCTTC 58.902 41.667 0.16 0.00 0.00 2.87
3204 3441 8.812513 ACATGATTCACAGATATCAAGGAAAA 57.187 30.769 5.32 0.00 34.69 2.29
3318 3555 8.249327 AGTATAGTATATCACCGAACACTACG 57.751 38.462 0.00 0.00 0.00 3.51
3496 3733 3.455619 AAGTCATCGTGTCGCATTTTC 57.544 42.857 0.00 0.00 0.00 2.29
3501 3738 1.859398 GCAAAGTCATCGTGTCGCA 59.141 52.632 0.00 0.00 0.00 5.10
3511 3748 5.645624 TCAATGAAAAGAAACGCAAAGTCA 58.354 33.333 0.00 0.00 0.00 3.41
4511 4779 6.498651 CCTATCTTACCAAGACATAGGTGGAT 59.501 42.308 7.16 0.00 41.01 3.41
4616 4884 3.715495 TGTTTGTCAAACATGCATGGAC 58.285 40.909 29.41 24.65 45.79 4.02
4657 4927 6.832384 AGTTACCTTTGATCATGCTGAATCAT 59.168 34.615 0.00 0.00 0.00 2.45
4819 5089 3.053896 GGCTGGCACGTGTAACCC 61.054 66.667 18.38 10.22 0.00 4.11
4820 5090 2.281208 TGGCTGGCACGTGTAACC 60.281 61.111 18.38 13.90 0.00 2.85
4894 5166 9.582648 AAACTGGAGAAAACTAGCCTAATTAAA 57.417 29.630 0.00 0.00 0.00 1.52
4935 5207 1.203313 ACCTTACTGGCCTCTTCCTCA 60.203 52.381 3.32 0.00 40.22 3.86
5081 5353 0.958382 TGGCATAACGTGTGGCTTCC 60.958 55.000 22.42 8.34 42.13 3.46
5133 5405 2.952978 AGACAAGCTAGACCGATGTAGG 59.047 50.000 0.00 0.00 37.30 3.18
5324 5605 3.648339 TGACAAAATTTCAGAGGCAGC 57.352 42.857 0.00 0.00 0.00 5.25
5570 5854 9.850628 AAATACATTTGATGAGAACTGAATGTG 57.149 29.630 9.14 0.00 37.99 3.21
6001 6299 0.242286 TCAGTTGAGCAGACTCTCGC 59.758 55.000 0.00 0.00 43.85 5.03
6132 6430 3.502979 GTCCTTCCTAGATATCTTCGCGT 59.497 47.826 11.25 0.00 0.00 6.01
6135 6433 6.885952 TCTTGTCCTTCCTAGATATCTTCG 57.114 41.667 11.25 2.74 0.00 3.79
6141 6439 7.808279 TTCCTTTTCTTGTCCTTCCTAGATA 57.192 36.000 0.00 0.00 0.00 1.98
6166 6464 7.220875 GTCGACAAAGCATTTTTCTTCTTCTTT 59.779 33.333 11.55 0.00 35.03 2.52
6178 6482 1.202879 TGAGGGGTCGACAAAGCATTT 60.203 47.619 18.91 0.00 40.26 2.32
6230 6540 5.805994 AGTAGCTGCGTTCATTACTTTAGAC 59.194 40.000 0.00 0.00 0.00 2.59
6289 6603 8.702163 AAATTTTACAACTTCCAAGTTCACAG 57.298 30.769 1.52 0.00 45.65 3.66
6326 6640 4.394920 GGAAGTTCAGACACACAAAACTCA 59.605 41.667 5.01 0.00 30.23 3.41
6334 6648 2.246719 AGCTGGAAGTTCAGACACAC 57.753 50.000 5.01 0.00 36.93 3.82
6373 6687 5.922544 GTGATTTTGCAAGCAATCTGTAAGT 59.077 36.000 19.55 0.00 35.70 2.24
6375 6689 5.229423 GGTGATTTTGCAAGCAATCTGTAA 58.771 37.500 19.55 0.00 35.70 2.41
6376 6690 4.321899 GGGTGATTTTGCAAGCAATCTGTA 60.322 41.667 19.55 2.99 35.70 2.74
6377 6691 3.555586 GGGTGATTTTGCAAGCAATCTGT 60.556 43.478 19.55 0.00 35.70 3.41
6404 6721 4.523943 TGCACAATGAGCTAAATCCAAACT 59.476 37.500 4.08 0.00 0.00 2.66
6408 6725 3.018856 CCTGCACAATGAGCTAAATCCA 58.981 45.455 4.08 0.00 0.00 3.41
6460 6777 0.387565 TCGCAAGGCAAACTTTTCCC 59.612 50.000 0.00 0.00 37.29 3.97
6462 6779 4.794248 AAAATCGCAAGGCAAACTTTTC 57.206 36.364 0.00 0.00 37.29 2.29
6485 6803 8.816894 ACAGATCTACACCTCAAATCTCTAAAA 58.183 33.333 0.00 0.00 0.00 1.52
6486 6804 8.367660 ACAGATCTACACCTCAAATCTCTAAA 57.632 34.615 0.00 0.00 0.00 1.85
6501 6819 3.740832 CAGTGCGACAAAACAGATCTACA 59.259 43.478 0.00 0.00 0.00 2.74
6510 6828 4.201783 ACAGAAGTAACAGTGCGACAAAAC 60.202 41.667 0.00 0.00 0.00 2.43
6518 6836 2.224314 GCCAGAACAGAAGTAACAGTGC 59.776 50.000 0.00 0.00 0.00 4.40
6521 6839 4.999950 AGATTGCCAGAACAGAAGTAACAG 59.000 41.667 0.00 0.00 0.00 3.16
6524 6842 6.995686 TGTAAAGATTGCCAGAACAGAAGTAA 59.004 34.615 0.00 0.00 0.00 2.24
6527 6853 5.471456 ACTGTAAAGATTGCCAGAACAGAAG 59.529 40.000 6.57 0.00 37.04 2.85
6532 6858 6.803154 AAGTACTGTAAAGATTGCCAGAAC 57.197 37.500 0.00 0.00 0.00 3.01
6536 6862 7.771826 GGGTATTAAGTACTGTAAAGATTGCCA 59.228 37.037 0.00 0.00 33.64 4.92
6546 6872 7.394359 AGACTTCGTTGGGTATTAAGTACTGTA 59.606 37.037 0.00 0.00 33.64 2.74
6547 6873 6.210185 AGACTTCGTTGGGTATTAAGTACTGT 59.790 38.462 0.00 0.00 33.64 3.55
6548 6874 6.530534 CAGACTTCGTTGGGTATTAAGTACTG 59.469 42.308 0.00 0.00 33.64 2.74
6549 6875 6.350780 CCAGACTTCGTTGGGTATTAAGTACT 60.351 42.308 0.00 0.00 33.64 2.73
6550 6876 5.809051 CCAGACTTCGTTGGGTATTAAGTAC 59.191 44.000 0.00 0.00 30.83 2.73
6551 6877 5.481473 ACCAGACTTCGTTGGGTATTAAGTA 59.519 40.000 0.00 0.00 38.82 2.24
6552 6878 4.285260 ACCAGACTTCGTTGGGTATTAAGT 59.715 41.667 0.00 0.00 38.82 2.24
6553 6879 4.828829 ACCAGACTTCGTTGGGTATTAAG 58.171 43.478 0.00 0.00 38.82 1.85
6554 6880 4.895668 ACCAGACTTCGTTGGGTATTAA 57.104 40.909 0.00 0.00 38.82 1.40
6577 6903 3.435566 CTTATTTCTCTAGCACGCGTCA 58.564 45.455 9.86 0.00 0.00 4.35
6583 6909 6.228616 AGTCCTTCCTTATTTCTCTAGCAC 57.771 41.667 0.00 0.00 0.00 4.40
6611 6938 4.088634 TGCCTAACATTTGCCTCTTCATT 58.911 39.130 0.00 0.00 0.00 2.57
6631 6959 2.054453 GGCAGGGGGTGAGAAATGC 61.054 63.158 0.00 0.00 0.00 3.56
6667 6996 7.703328 ACAAATATCATAAAAGTACTTGGCCG 58.297 34.615 9.34 0.00 0.00 6.13
6816 7150 4.237349 ACAAGGCAAAAAGGTAACATCG 57.763 40.909 0.00 0.00 41.41 3.84
7045 7381 7.684317 TGTCTGGAAACATAATATACTGGGA 57.316 36.000 0.00 0.00 41.51 4.37
7090 7426 4.225042 TGCATATGTGAGTAGTTGGTTCCT 59.775 41.667 4.29 0.00 0.00 3.36
7091 7427 4.332819 GTGCATATGTGAGTAGTTGGTTCC 59.667 45.833 4.29 0.00 0.00 3.62
7123 7459 2.290367 TGGACAAAACTGAGCACAATCG 59.710 45.455 0.00 0.00 0.00 3.34
7157 7493 6.819649 CACGAAAGGGTATTTACATAAGGTCA 59.180 38.462 0.00 0.00 0.00 4.02
7176 7512 3.826236 TTGGACAAAAACGACACGAAA 57.174 38.095 0.00 0.00 0.00 3.46
7179 7515 3.326733 TGATTGGACAAAAACGACACG 57.673 42.857 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.