Multiple sequence alignment - TraesCS2D01G332700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G332700 chr2D 100.000 4726 0 0 1 4726 426428956 426433681 0.000000e+00 8728.0
1 TraesCS2D01G332700 chr2D 77.904 1145 128 60 1678 2782 611771629 611772688 8.750000e-167 597.0
2 TraesCS2D01G332700 chr2D 79.937 633 59 33 933 1550 611770977 611771556 2.050000e-108 403.0
3 TraesCS2D01G332700 chr2D 100.000 48 0 0 4308 4355 426433215 426433262 6.510000e-14 89.8
4 TraesCS2D01G332700 chr2D 100.000 48 0 0 4260 4307 426433263 426433310 6.510000e-14 89.8
5 TraesCS2D01G332700 chr2B 93.678 2768 101 34 642 3347 503448618 503451373 0.000000e+00 4074.0
6 TraesCS2D01G332700 chr2B 96.529 1354 39 5 3377 4724 503451433 503452784 0.000000e+00 2233.0
7 TraesCS2D01G332700 chr2B 93.262 653 32 6 1 643 503447930 503448580 0.000000e+00 952.0
8 TraesCS2D01G332700 chr2B 83.084 668 60 28 812 1450 503341649 503341006 4.130000e-155 558.0
9 TraesCS2D01G332700 chr2B 100.000 48 0 0 4260 4307 503452368 503452415 6.510000e-14 89.8
10 TraesCS2D01G332700 chr2B 97.917 48 1 0 4308 4355 503452320 503452367 3.030000e-12 84.2
11 TraesCS2D01G332700 chr2B 100.000 28 0 0 1076 1103 38063749 38063776 9.000000e-03 52.8
12 TraesCS2D01G332700 chr2A 92.209 2798 126 44 642 3379 562513480 562510715 0.000000e+00 3875.0
13 TraesCS2D01G332700 chr2A 96.820 1352 36 3 3380 4724 562510631 562509280 0.000000e+00 2252.0
14 TraesCS2D01G332700 chr2A 92.079 505 29 8 1 498 562514169 562513669 0.000000e+00 701.0
15 TraesCS2D01G332700 chr2A 78.897 1142 121 48 910 1999 744244890 744245963 0.000000e+00 664.0
16 TraesCS2D01G332700 chr2A 84.502 542 58 12 2253 2788 744246590 744247111 3.260000e-141 512.0
17 TraesCS2D01G332700 chr2A 100.000 48 0 0 4260 4307 562509696 562509649 6.510000e-14 89.8
18 TraesCS2D01G332700 chr2A 89.655 58 3 2 2819 2876 744247111 744247165 2.360000e-08 71.3
19 TraesCS2D01G332700 chr1B 89.953 428 22 12 12 429 6412225 6412641 2.500000e-147 532.0
20 TraesCS2D01G332700 chr3A 88.584 438 29 11 2 429 227067155 227067581 3.260000e-141 512.0
21 TraesCS2D01G332700 chr1D 87.699 439 33 11 1 429 15183755 15184182 4.250000e-135 492.0
22 TraesCS2D01G332700 chr4B 82.564 390 53 6 4335 4723 1766819 1767194 3.530000e-86 329.0
23 TraesCS2D01G332700 chr3B 80.846 402 51 16 4334 4726 825499261 825499645 4.630000e-75 292.0
24 TraesCS2D01G332700 chrUn 79.404 403 56 18 4334 4726 43079679 43079294 4.690000e-65 259.0
25 TraesCS2D01G332700 chr5D 85.321 218 29 2 4509 4726 61347997 61347783 6.160000e-54 222.0
26 TraesCS2D01G332700 chr5B 83.628 226 33 3 4501 4726 69306437 69306658 4.790000e-50 209.0
27 TraesCS2D01G332700 chr5A 84.404 218 29 5 4510 4726 51429485 51429272 4.790000e-50 209.0
28 TraesCS2D01G332700 chr4A 83.036 224 34 3 4501 4724 549393929 549393710 2.880000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G332700 chr2D 426428956 426433681 4725 False 2969.200000 8728 100.000000 1 4726 3 chr2D.!!$F1 4725
1 TraesCS2D01G332700 chr2D 611770977 611772688 1711 False 500.000000 597 78.920500 933 2782 2 chr2D.!!$F2 1849
2 TraesCS2D01G332700 chr2B 503447930 503452784 4854 False 1486.600000 4074 96.277200 1 4724 5 chr2B.!!$F2 4723
3 TraesCS2D01G332700 chr2B 503341006 503341649 643 True 558.000000 558 83.084000 812 1450 1 chr2B.!!$R1 638
4 TraesCS2D01G332700 chr2A 562509280 562514169 4889 True 1729.450000 3875 95.277000 1 4724 4 chr2A.!!$R1 4723
5 TraesCS2D01G332700 chr2A 744244890 744247165 2275 False 415.766667 664 84.351333 910 2876 3 chr2A.!!$F1 1966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 997 0.253894 TCCGTCCGTCTAGTCCATCA 59.746 55.000 0.00 0.00 0.0 3.07 F
1148 1336 0.612229 CTCCTGCTCAGCTTCAAGGA 59.388 55.000 3.52 3.52 0.0 3.36 F
2370 3034 1.272536 ACCTACATCGACCTGTCCAGT 60.273 52.381 0.00 0.00 0.0 4.00 F
3048 3721 0.610232 GGCTGAAGATTGCACTGGGT 60.610 55.000 0.00 0.00 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2790 3463 0.394938 TTTGCCCGTCTTGTAGCTCA 59.605 50.000 0.0 0.0 0.00 4.26 R
3037 3710 0.692476 TGAGCTACACCCAGTGCAAT 59.308 50.000 0.0 0.0 36.98 3.56 R
3436 4205 1.608336 TCCATGAGGTTCGTCGGGT 60.608 57.895 0.0 0.0 35.89 5.28 R
3954 4723 3.057876 ACTGACTCGTTCTACTGAAGCTG 60.058 47.826 0.0 0.0 32.15 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 54 5.351458 GCCATTCTTGTATGATTTTCCACC 58.649 41.667 0.00 0.00 0.00 4.61
52 56 6.351286 GCCATTCTTGTATGATTTTCCACCTT 60.351 38.462 0.00 0.00 0.00 3.50
101 105 1.140852 TGTCCATTGATCCGGGATGTC 59.859 52.381 15.70 2.01 32.43 3.06
118 125 2.536066 TGTCATGTAGTAGGTGTGGCT 58.464 47.619 0.00 0.00 0.00 4.75
157 165 6.871844 TCCAAAGAGAGTACATTCTCATCTG 58.128 40.000 13.05 7.58 44.85 2.90
177 185 0.402121 GGAACCAGGGAAAGCTCACT 59.598 55.000 0.00 0.00 34.79 3.41
191 199 1.001406 GCTCACTGGTAGCACAAGTCT 59.999 52.381 0.00 0.00 39.83 3.24
200 208 4.709886 TGGTAGCACAAGTCTAAGCATCTA 59.290 41.667 0.00 0.00 0.00 1.98
278 288 7.550906 GCTGAGTATTATTCTCTCTTGTTTGGT 59.449 37.037 0.87 0.00 33.59 3.67
279 289 8.777865 TGAGTATTATTCTCTCTTGTTTGGTG 57.222 34.615 0.87 0.00 33.59 4.17
309 319 4.165180 TGTGGCTTATGCTGGTAGGATTTA 59.835 41.667 0.13 0.00 39.59 1.40
403 415 8.189119 TGCCCAATAATTGAAGTTAACTTTCT 57.811 30.769 21.40 9.34 36.11 2.52
437 450 7.962934 TGATTGAAGTTAACTTTGTTTGACG 57.037 32.000 21.40 0.00 36.11 4.35
468 481 1.405463 CACTCACGCACTATCTGCCTA 59.595 52.381 0.00 0.00 43.84 3.93
470 483 1.678627 CTCACGCACTATCTGCCTAGT 59.321 52.381 0.00 0.00 43.84 2.57
473 486 1.678627 ACGCACTATCTGCCTAGTCTG 59.321 52.381 0.00 0.00 43.84 3.51
519 532 2.162408 CGAAAGCAAAATCCACTCTCCC 59.838 50.000 0.00 0.00 0.00 4.30
526 539 4.508662 CAAAATCCACTCTCCCAGTAGAC 58.491 47.826 0.00 0.00 32.21 2.59
527 540 3.767309 AATCCACTCTCCCAGTAGACT 57.233 47.619 0.00 0.00 32.21 3.24
528 541 2.516227 TCCACTCTCCCAGTAGACTG 57.484 55.000 2.50 2.50 43.40 3.51
532 549 3.054287 CCACTCTCCCAGTAGACTGTAGA 60.054 52.174 8.78 9.54 42.27 2.59
538 555 3.848377 TCCCAGTAGACTGTAGAGTGGTA 59.152 47.826 8.78 0.00 42.27 3.25
580 600 1.134670 CAGTCGAATCCTGACTTCCCC 60.135 57.143 0.00 0.00 44.00 4.81
637 666 2.069273 GGTCCATTTCTATCCGCATCG 58.931 52.381 0.00 0.00 0.00 3.84
732 830 0.466555 CCCCGTCCAAAAGTTCCACA 60.467 55.000 0.00 0.00 0.00 4.17
733 831 1.616159 CCCGTCCAAAAGTTCCACAT 58.384 50.000 0.00 0.00 0.00 3.21
734 832 1.269448 CCCGTCCAAAAGTTCCACATG 59.731 52.381 0.00 0.00 0.00 3.21
735 833 2.226330 CCGTCCAAAAGTTCCACATGA 58.774 47.619 0.00 0.00 0.00 3.07
748 849 8.674263 AAGTTCCACATGAAATAATGCAAAAA 57.326 26.923 0.00 0.00 33.94 1.94
876 997 0.253894 TCCGTCCGTCTAGTCCATCA 59.746 55.000 0.00 0.00 0.00 3.07
953 1098 4.504916 CGCTCGGCCACTCTCCTG 62.505 72.222 2.24 0.00 0.00 3.86
1035 1216 4.486503 GCCTGCCTGCCTCTCCTG 62.487 72.222 0.00 0.00 0.00 3.86
1074 1255 3.057946 CGCTGATCATCTCCTCGTATTCA 60.058 47.826 0.00 0.00 0.00 2.57
1119 1300 2.510238 GCAGAGCAGCCGGTACAG 60.510 66.667 1.90 0.00 0.00 2.74
1120 1301 2.185350 CAGAGCAGCCGGTACAGG 59.815 66.667 7.81 7.81 0.00 4.00
1121 1302 2.283966 AGAGCAGCCGGTACAGGT 60.284 61.111 13.86 0.00 0.00 4.00
1122 1303 1.000019 AGAGCAGCCGGTACAGGTA 60.000 57.895 13.86 0.00 0.00 3.08
1127 1308 2.182537 GCCGGTACAGGTACACGG 59.817 66.667 23.39 23.39 44.81 4.94
1148 1336 0.612229 CTCCTGCTCAGCTTCAAGGA 59.388 55.000 3.52 3.52 0.00 3.36
1281 1483 4.704103 TCGCTCCAGCTCCAGGGT 62.704 66.667 5.63 0.00 39.32 4.34
2154 2411 3.515286 TACCGCTTCTCCGCCTCG 61.515 66.667 0.00 0.00 0.00 4.63
2241 2498 1.588239 TCTCCCACAATGCCATCTCT 58.412 50.000 0.00 0.00 0.00 3.10
2289 2953 2.503356 CAAGAGGCTGGTATCCTTGTCT 59.497 50.000 0.00 0.00 33.24 3.41
2296 2960 2.099921 CTGGTATCCTTGTCTCTGTCCG 59.900 54.545 0.00 0.00 0.00 4.79
2328 2992 3.139565 GGGACGATACCAGCCTCC 58.860 66.667 0.00 0.00 0.00 4.30
2370 3034 1.272536 ACCTACATCGACCTGTCCAGT 60.273 52.381 0.00 0.00 0.00 4.00
2571 3244 2.029623 CCATTGAGAAAGCATCAGGGG 58.970 52.381 0.00 0.00 0.00 4.79
2742 3415 2.666862 TTGTTCGCCGCGTTCCAT 60.667 55.556 13.39 0.00 0.00 3.41
2794 3467 2.948315 GGAAAGGTCCATCTGATTGAGC 59.052 50.000 11.69 11.69 44.26 4.26
2916 3589 3.248266 GCACAAGAATGTTGCCAAGATC 58.752 45.455 0.00 0.00 37.82 2.75
3037 3710 0.976641 ATGGAACGACAGGCTGAAGA 59.023 50.000 23.66 0.00 0.00 2.87
3048 3721 0.610232 GGCTGAAGATTGCACTGGGT 60.610 55.000 0.00 0.00 0.00 4.51
3081 3754 4.276926 GGATTGGCTTATCTTCACCATGAC 59.723 45.833 0.00 0.00 30.85 3.06
3097 3770 3.256879 CCATGACTATACTCCTCGCATGT 59.743 47.826 0.00 0.00 32.09 3.21
3338 4023 5.982516 GCAATGTGTTCATCTTGTTACCAAA 59.017 36.000 0.00 0.00 32.56 3.28
3362 4047 9.623000 AAATTGTTTTAGTAGTAACCTCACTGT 57.377 29.630 0.00 0.00 0.00 3.55
3365 4050 9.701098 TTGTTTTAGTAGTAACCTCACTGTATG 57.299 33.333 0.00 0.00 0.00 2.39
3379 4064 6.992123 CCTCACTGTATGATTGCACCTTATAA 59.008 38.462 0.00 0.00 36.48 0.98
3380 4065 7.498900 CCTCACTGTATGATTGCACCTTATAAA 59.501 37.037 0.00 0.00 36.48 1.40
3381 4066 8.800370 TCACTGTATGATTGCACCTTATAAAA 57.200 30.769 0.00 0.00 29.99 1.52
3382 4067 9.237187 TCACTGTATGATTGCACCTTATAAAAA 57.763 29.630 0.00 0.00 29.99 1.94
3436 4205 4.462483 ACCAGAGCAAAACTTCACAAAGAA 59.538 37.500 0.00 0.00 36.30 2.52
3440 4209 2.857748 GCAAAACTTCACAAAGAACCCG 59.142 45.455 0.00 0.00 36.30 5.28
3713 4482 2.086054 ATGAAGTTGTGAGGTCGCTC 57.914 50.000 0.00 0.00 0.00 5.03
3729 4498 0.108329 GCTCCAGGCGCTGTAGTTTA 60.108 55.000 7.64 0.00 0.00 2.01
3758 4527 0.832559 TCCACGGACACCACCATACA 60.833 55.000 0.00 0.00 0.00 2.29
3786 4555 4.394300 AGTTGCTATGTGATCTTTGACTGC 59.606 41.667 0.00 0.00 0.00 4.40
3969 4738 4.963953 CACAAAAACAGCTTCAGTAGAACG 59.036 41.667 0.00 0.00 0.00 3.95
4067 4836 7.599998 ACAATTCCAACTTGCAAATATCTGAAC 59.400 33.333 0.00 0.00 0.00 3.18
4227 5002 9.326339 GGAAACAGATGAATTAAAACGAACTAC 57.674 33.333 0.00 0.00 0.00 2.73
4535 5311 5.724328 CTGAGAAAGTACCAGCAGATTGTA 58.276 41.667 0.00 0.00 0.00 2.41
4631 5407 0.268869 AGACCATGCCCTGATCCCTA 59.731 55.000 0.00 0.00 0.00 3.53
4640 5416 1.632164 CTGATCCCTACCCCTCCCA 59.368 63.158 0.00 0.00 0.00 4.37
4652 5428 1.115930 CCCTCCCACCGATCCAGTAG 61.116 65.000 0.00 0.00 0.00 2.57
4724 5500 2.818751 TGTTCCTCCCAACAAACACT 57.181 45.000 0.00 0.00 33.21 3.55
4725 5501 2.374184 TGTTCCTCCCAACAAACACTG 58.626 47.619 0.00 0.00 33.21 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 54 7.312657 ACATGCAAGATCACTACATACAAAG 57.687 36.000 0.00 0.00 0.00 2.77
52 56 7.821846 TGTTACATGCAAGATCACTACATACAA 59.178 33.333 0.00 0.00 0.00 2.41
101 105 2.028112 ACACAGCCACACCTACTACATG 60.028 50.000 0.00 0.00 0.00 3.21
157 165 0.609406 GTGAGCTTTCCCTGGTTCCC 60.609 60.000 0.00 0.00 0.00 3.97
177 185 3.515502 AGATGCTTAGACTTGTGCTACCA 59.484 43.478 0.00 0.00 0.00 3.25
191 199 9.371136 CTTTCAGTAAGACAACATAGATGCTTA 57.629 33.333 0.00 0.00 35.80 3.09
200 208 8.403236 GTTTGTTACCTTTCAGTAAGACAACAT 58.597 33.333 6.86 0.00 37.28 2.71
278 288 3.599343 CAGCATAAGCCACAAGTCTACA 58.401 45.455 0.00 0.00 43.56 2.74
279 289 2.939103 CCAGCATAAGCCACAAGTCTAC 59.061 50.000 0.00 0.00 43.56 2.59
309 319 4.508551 TCCTTAATGGTCAGCATCATGT 57.491 40.909 0.00 0.00 37.07 3.21
339 351 5.243426 GGCAGTAAAACAAACTGTCTTGA 57.757 39.130 5.25 0.00 44.38 3.02
351 363 5.588240 ACAAGCAAGTAAAGGCAGTAAAAC 58.412 37.500 0.00 0.00 0.00 2.43
403 415 5.306678 AGTTAACTTCAATCATGGCCCAAAA 59.693 36.000 1.12 0.00 0.00 2.44
468 481 0.613292 ATCTGCCTCCGTCACAGACT 60.613 55.000 0.00 0.00 42.83 3.24
470 483 1.064685 TCTATCTGCCTCCGTCACAGA 60.065 52.381 0.00 0.00 44.06 3.41
473 486 2.235016 AGATCTATCTGCCTCCGTCAC 58.765 52.381 0.00 0.00 35.42 3.67
526 539 3.119316 CCTCTGCAACTACCACTCTACAG 60.119 52.174 0.00 0.00 0.00 2.74
527 540 2.826128 CCTCTGCAACTACCACTCTACA 59.174 50.000 0.00 0.00 0.00 2.74
528 541 2.417515 GCCTCTGCAACTACCACTCTAC 60.418 54.545 0.00 0.00 37.47 2.59
532 549 1.679898 GGCCTCTGCAACTACCACT 59.320 57.895 0.00 0.00 40.13 4.00
538 555 1.376424 CATCACGGCCTCTGCAACT 60.376 57.895 0.00 0.00 40.13 3.16
637 666 2.159558 TGTGACGAGTGAGTTATCGAGC 60.160 50.000 1.13 0.00 41.40 5.03
757 858 0.391793 GTAGGCTGAGTCAGGTTGGC 60.392 60.000 21.54 8.81 31.21 4.52
953 1098 0.734253 CAGTGCGAGTGAGTGTAGGC 60.734 60.000 0.00 0.00 0.00 3.93
991 1156 2.440980 GGTTGCCATGGAGGGAGC 60.441 66.667 18.40 3.17 39.73 4.70
993 1158 2.763215 GTGGTTGCCATGGAGGGA 59.237 61.111 18.40 0.00 35.28 4.20
994 1159 2.362889 GGTGGTTGCCATGGAGGG 60.363 66.667 18.40 0.00 35.28 4.30
995 1160 1.679977 CTGGTGGTTGCCATGGAGG 60.680 63.158 18.40 0.00 37.96 4.30
1035 1216 4.828925 GGCGACAGGAGGAGCAGC 62.829 72.222 0.00 0.00 0.00 5.25
1119 1300 3.372554 GAGCAGGAGGCCGTGTACC 62.373 68.421 0.00 0.00 46.50 3.34
1120 1301 2.184579 GAGCAGGAGGCCGTGTAC 59.815 66.667 0.00 0.00 46.50 2.90
1121 1302 2.283604 TGAGCAGGAGGCCGTGTA 60.284 61.111 0.00 0.00 46.50 2.90
1122 1303 3.699894 CTGAGCAGGAGGCCGTGT 61.700 66.667 0.00 0.00 46.50 4.49
1127 1308 1.002868 TTGAAGCTGAGCAGGAGGC 60.003 57.895 7.39 0.00 45.30 4.70
1547 1762 2.360475 GGTTGAGCACCTGGAGCC 60.360 66.667 12.66 5.21 43.29 4.70
1647 1862 2.637872 CTGGGACTCCAAGAACTGGTTA 59.362 50.000 0.00 0.00 46.51 2.85
1782 2007 2.350804 CAAGCTGTTCATGGACAGATCG 59.649 50.000 34.05 17.15 44.78 3.69
2241 2498 0.547471 TGAAGTCAGGGATGGAGCCA 60.547 55.000 0.00 0.00 0.00 4.75
2247 2504 2.227388 GCAGTTGTTGAAGTCAGGGATG 59.773 50.000 0.00 0.00 0.00 3.51
2599 3272 0.460284 AGCGCCAATCCTGTAACGAG 60.460 55.000 2.29 0.00 0.00 4.18
2649 3322 2.357154 GGACCTGTTGCCATGTATCCTT 60.357 50.000 0.00 0.00 0.00 3.36
2742 3415 4.498241 CTCTTCCGATCACATTCTTGTCA 58.502 43.478 0.00 0.00 32.34 3.58
2790 3463 0.394938 TTTGCCCGTCTTGTAGCTCA 59.605 50.000 0.00 0.00 0.00 4.26
2792 3465 1.880027 CTTTTTGCCCGTCTTGTAGCT 59.120 47.619 0.00 0.00 0.00 3.32
2794 3467 2.096417 CGACTTTTTGCCCGTCTTGTAG 60.096 50.000 0.00 0.00 0.00 2.74
3037 3710 0.692476 TGAGCTACACCCAGTGCAAT 59.308 50.000 0.00 0.00 36.98 3.56
3048 3721 4.410228 AGATAAGCCAATCCTTGAGCTACA 59.590 41.667 0.00 0.00 36.57 2.74
3066 3739 7.175119 CGAGGAGTATAGTCATGGTGAAGATAA 59.825 40.741 9.76 0.00 0.00 1.75
3097 3770 1.280982 GACTTCAGATCGCGATGCAA 58.719 50.000 29.09 14.39 0.00 4.08
3132 3805 1.356624 GGGCTCAAATTCATCGGCG 59.643 57.895 0.00 0.00 0.00 6.46
3436 4205 1.608336 TCCATGAGGTTCGTCGGGT 60.608 57.895 0.00 0.00 35.89 5.28
3440 4209 3.031660 GACGTCCATGAGGTTCGTC 57.968 57.895 3.51 14.53 46.22 4.20
3654 4423 3.414700 CTTCACCGACGTGCAGCC 61.415 66.667 0.00 0.00 40.04 4.85
3713 4482 2.102588 AGGTATAAACTACAGCGCCTGG 59.897 50.000 2.29 0.00 35.51 4.45
3729 4498 2.093128 GGTGTCCGTGGATGAAAGGTAT 60.093 50.000 0.00 0.00 0.00 2.73
3758 4527 6.148480 GTCAAAGATCACATAGCAACTTCAGT 59.852 38.462 0.00 0.00 0.00 3.41
3786 4555 4.036027 ACATCACAAACTGAAGTGCTTCTG 59.964 41.667 14.48 14.48 42.09 3.02
3888 4657 6.653320 TCACACAGGCGTCTTATTTCTATTTT 59.347 34.615 0.00 0.00 0.00 1.82
3954 4723 3.057876 ACTGACTCGTTCTACTGAAGCTG 60.058 47.826 0.00 0.00 32.15 4.24
3969 4738 3.873952 ACTTCAAAACTGCTCACTGACTC 59.126 43.478 0.00 0.00 0.00 3.36
4114 4888 8.504005 GTTTATGTCCTGTAATGGAATAATCGG 58.496 37.037 0.00 0.00 37.93 4.18
4221 4996 4.402056 TGCCTATTGTAGCCAGTAGTTC 57.598 45.455 0.00 0.00 30.94 3.01
4227 5002 5.126067 AGTGTAATTGCCTATTGTAGCCAG 58.874 41.667 0.00 0.00 0.00 4.85
4631 5407 4.019513 TGGATCGGTGGGAGGGGT 62.020 66.667 0.00 0.00 0.00 4.95
4640 5416 4.142004 GGTAATTGTGTCTACTGGATCGGT 60.142 45.833 0.00 0.00 0.00 4.69
4652 5428 4.003648 CAGGACTGAAGGGTAATTGTGTC 58.996 47.826 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.