Multiple sequence alignment - TraesCS2D01G332200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G332200 chr2D 100.000 2537 0 0 1 2537 425160038 425157502 0.000000e+00 4686.0
1 TraesCS2D01G332200 chr2D 84.665 313 34 10 240 543 66430736 66431043 1.480000e-77 300.0
2 TraesCS2D01G332200 chr2D 89.167 240 24 1 1 240 368971483 368971720 5.310000e-77 298.0
3 TraesCS2D01G332200 chr2A 90.250 1600 79 20 844 2437 563202324 563203852 0.000000e+00 2019.0
4 TraesCS2D01G332200 chr2A 86.221 479 59 7 2026 2501 677884363 677883889 1.740000e-141 512.0
5 TraesCS2D01G332200 chr2B 93.577 903 42 8 844 1743 500455375 500454486 0.000000e+00 1332.0
6 TraesCS2D01G332200 chr2B 90.625 480 33 7 2051 2529 500285171 500284703 5.960000e-176 627.0
7 TraesCS2D01G332200 chr2B 86.430 479 58 7 2026 2501 24942562 24942088 3.740000e-143 518.0
8 TraesCS2D01G332200 chr2B 86.013 479 60 7 2026 2501 543313511 543313985 8.100000e-140 507.0
9 TraesCS2D01G332200 chr2B 91.753 97 6 2 232 326 474306180 474306084 1.580000e-27 134.0
10 TraesCS2D01G332200 chr7D 86.192 478 61 5 2026 2501 199911987 199911513 1.740000e-141 512.0
11 TraesCS2D01G332200 chr7D 90.283 247 23 1 1 247 46540564 46540319 3.150000e-84 322.0
12 TraesCS2D01G332200 chr7D 89.344 244 25 1 1 243 489294138 489293895 3.170000e-79 305.0
13 TraesCS2D01G332200 chr7D 88.115 244 28 1 4 247 121802873 121802631 3.190000e-74 289.0
14 TraesCS2D01G332200 chr7B 86.250 480 57 9 2026 2501 254085032 254085506 1.740000e-141 512.0
15 TraesCS2D01G332200 chr7B 85.902 305 30 9 239 535 323586987 323587286 1.890000e-81 313.0
16 TraesCS2D01G332200 chr1D 86.538 468 56 7 2026 2490 70343957 70343494 2.250000e-140 508.0
17 TraesCS2D01G332200 chr1B 86.013 479 60 7 2026 2501 654268914 654268440 8.100000e-140 507.0
18 TraesCS2D01G332200 chr1B 87.879 66 6 2 425 488 426980802 426980867 2.710000e-10 76.8
19 TraesCS2D01G332200 chr3D 90.400 250 23 1 1 250 75121423 75121175 6.770000e-86 327.0
20 TraesCS2D01G332200 chr3D 89.069 247 26 1 1 247 542851260 542851015 3.170000e-79 305.0
21 TraesCS2D01G332200 chr3D 93.103 87 6 0 240 326 41274766 41274680 7.370000e-26 128.0
22 TraesCS2D01G332200 chr6D 85.669 314 31 10 236 540 114820303 114819995 4.070000e-83 318.0
23 TraesCS2D01G332200 chr6D 88.400 250 28 1 1 250 114820592 114820344 1.480000e-77 300.0
24 TraesCS2D01G332200 chr5A 88.259 247 28 1 1 247 671350882 671350637 6.860000e-76 294.0
25 TraesCS2D01G332200 chr3B 88.259 247 27 2 1 247 759087979 759088223 6.860000e-76 294.0
26 TraesCS2D01G332200 chr3B 94.253 87 5 0 240 326 696741649 696741563 1.580000e-27 134.0
27 TraesCS2D01G332200 chr7A 90.722 97 8 1 231 326 32994273 32994177 7.370000e-26 128.0
28 TraesCS2D01G332200 chr5B 94.048 84 5 0 243 326 683085771 683085688 7.370000e-26 128.0
29 TraesCS2D01G332200 chr3A 93.103 87 6 0 240 326 709502816 709502902 7.370000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G332200 chr2D 425157502 425160038 2536 True 4686 4686 100.0000 1 2537 1 chr2D.!!$R1 2536
1 TraesCS2D01G332200 chr2A 563202324 563203852 1528 False 2019 2019 90.2500 844 2437 1 chr2A.!!$F1 1593
2 TraesCS2D01G332200 chr2B 500454486 500455375 889 True 1332 1332 93.5770 844 1743 1 chr2B.!!$R4 899
3 TraesCS2D01G332200 chr6D 114819995 114820592 597 True 309 318 87.0345 1 540 2 chr6D.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 695 0.034574 TCGGCGGTAGGGTACAGTAA 60.035 55.0 7.21 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1859 0.035458 ACTGAAGCACTACTGGGCAC 59.965 55.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.438830 GTTCGACGTCATCAACTGGC 59.561 55.000 17.16 0.00 0.00 4.85
56 57 2.563427 GGAGGCGAAAACTGCAGC 59.437 61.111 15.27 0.00 0.00 5.25
57 58 2.260869 GGAGGCGAAAACTGCAGCA 61.261 57.895 15.27 0.00 0.00 4.41
82 83 2.270986 GCAAGGTGGGAGTGCTTGG 61.271 63.158 0.00 0.00 35.36 3.61
96 97 3.309436 CTTGGACGGTCGGATGCCA 62.309 63.158 1.43 0.00 0.00 4.92
98 99 2.818274 GGACGGTCGGATGCCAAC 60.818 66.667 1.43 0.00 0.00 3.77
99 100 2.264794 GACGGTCGGATGCCAACT 59.735 61.111 0.00 0.00 0.00 3.16
102 103 1.255667 ACGGTCGGATGCCAACTAGT 61.256 55.000 0.00 0.00 0.00 2.57
105 106 1.359848 GTCGGATGCCAACTAGTGTG 58.640 55.000 0.00 0.00 0.00 3.82
107 108 1.369091 CGGATGCCAACTAGTGTGCC 61.369 60.000 12.80 2.04 0.00 5.01
144 145 2.464459 GGATCCGCTGCCGTTTCTG 61.464 63.158 0.00 0.00 0.00 3.02
155 156 2.027625 CGTTTCTGTCTCCACGGCC 61.028 63.158 0.00 0.00 0.00 6.13
159 160 4.087892 CTGTCTCCACGGCCAGGG 62.088 72.222 11.11 7.35 0.00 4.45
168 169 0.814010 CACGGCCAGGGCTAACATAC 60.814 60.000 12.03 0.00 41.60 2.39
169 170 1.268992 ACGGCCAGGGCTAACATACA 61.269 55.000 12.03 0.00 41.60 2.29
173 174 1.211949 GCCAGGGCTAACATACAAGGA 59.788 52.381 2.30 0.00 38.26 3.36
191 192 1.473080 GGAGCTCTGAAGATGTCTGCC 60.473 57.143 14.64 0.00 0.00 4.85
222 223 9.314321 CTCTAAACTTGTCTGAAGAACTTGTTA 57.686 33.333 0.00 0.00 0.00 2.41
227 228 5.092554 TGTCTGAAGAACTTGTTACACCA 57.907 39.130 0.00 0.00 0.00 4.17
230 231 6.260050 TGTCTGAAGAACTTGTTACACCATTC 59.740 38.462 0.00 0.00 0.00 2.67
231 232 6.260050 GTCTGAAGAACTTGTTACACCATTCA 59.740 38.462 5.57 2.86 0.00 2.57
253 309 7.517614 TCATTGGCTTTTGTGAAACTATGTA 57.482 32.000 0.00 0.00 38.04 2.29
259 315 8.301002 TGGCTTTTGTGAAACTATGTATAAACC 58.699 33.333 0.00 0.00 38.04 3.27
260 316 8.301002 GGCTTTTGTGAAACTATGTATAAACCA 58.699 33.333 0.00 0.00 38.04 3.67
385 451 8.580720 TGTGAGCTTTGCATATTTAAGGTTTTA 58.419 29.630 1.64 0.00 30.47 1.52
473 540 8.964150 ACGAAATAAACAATCACTAAAACTTGC 58.036 29.630 0.00 0.00 0.00 4.01
479 547 7.897575 AACAATCACTAAAACTTGCAAAACA 57.102 28.000 0.00 0.00 0.00 2.83
490 558 4.322567 ACTTGCAAAACACAAAACCACAT 58.677 34.783 0.00 0.00 0.00 3.21
492 560 3.005554 TGCAAAACACAAAACCACATGG 58.994 40.909 0.00 0.00 42.17 3.66
511 579 4.796495 CCTACCGCCAAGCACCCC 62.796 72.222 0.00 0.00 0.00 4.95
527 595 0.886563 CCCCGACGGTAGGATATCAC 59.113 60.000 13.94 0.00 0.00 3.06
540 608 3.711704 AGGATATCACAACCTACCACCAG 59.288 47.826 4.83 0.00 31.78 4.00
541 609 3.181454 GGATATCACAACCTACCACCAGG 60.181 52.174 4.83 0.00 41.87 4.45
554 622 3.845781 CCACCAGGTATATGCAGTTCT 57.154 47.619 0.00 0.00 0.00 3.01
555 623 3.733337 CCACCAGGTATATGCAGTTCTC 58.267 50.000 0.00 0.00 0.00 2.87
556 624 3.384668 CACCAGGTATATGCAGTTCTCG 58.615 50.000 0.00 0.00 0.00 4.04
557 625 2.365617 ACCAGGTATATGCAGTTCTCGG 59.634 50.000 0.00 0.00 0.00 4.63
558 626 2.365617 CCAGGTATATGCAGTTCTCGGT 59.634 50.000 0.00 0.00 0.00 4.69
559 627 3.181465 CCAGGTATATGCAGTTCTCGGTT 60.181 47.826 0.00 0.00 0.00 4.44
560 628 4.038763 CCAGGTATATGCAGTTCTCGGTTA 59.961 45.833 0.00 0.00 0.00 2.85
561 629 4.982916 CAGGTATATGCAGTTCTCGGTTAC 59.017 45.833 0.00 0.00 0.00 2.50
562 630 4.647853 AGGTATATGCAGTTCTCGGTTACA 59.352 41.667 0.00 0.00 0.00 2.41
563 631 4.982916 GGTATATGCAGTTCTCGGTTACAG 59.017 45.833 0.00 0.00 0.00 2.74
564 632 1.726853 ATGCAGTTCTCGGTTACAGC 58.273 50.000 0.00 0.00 0.00 4.40
565 633 0.391228 TGCAGTTCTCGGTTACAGCA 59.609 50.000 0.00 0.00 34.92 4.41
566 634 0.790814 GCAGTTCTCGGTTACAGCAC 59.209 55.000 0.00 0.00 0.00 4.40
567 635 1.060713 CAGTTCTCGGTTACAGCACG 58.939 55.000 0.00 0.00 0.00 5.34
568 636 0.672342 AGTTCTCGGTTACAGCACGT 59.328 50.000 0.00 0.00 0.00 4.49
569 637 1.068127 AGTTCTCGGTTACAGCACGTT 59.932 47.619 0.00 0.00 0.00 3.99
570 638 1.862827 GTTCTCGGTTACAGCACGTTT 59.137 47.619 0.00 0.00 0.00 3.60
571 639 1.493772 TCTCGGTTACAGCACGTTTG 58.506 50.000 0.00 0.00 0.00 2.93
584 652 3.608041 GTTTGCAACGCGAAACCC 58.392 55.556 15.93 0.00 33.40 4.11
585 653 1.947146 GTTTGCAACGCGAAACCCC 60.947 57.895 15.93 0.00 33.40 4.95
586 654 3.140225 TTTGCAACGCGAAACCCCC 62.140 57.895 15.93 0.00 0.00 5.40
587 655 4.877619 TGCAACGCGAAACCCCCA 62.878 61.111 15.93 0.00 0.00 4.96
588 656 4.038080 GCAACGCGAAACCCCCAG 62.038 66.667 15.93 0.00 0.00 4.45
589 657 2.593436 CAACGCGAAACCCCCAGT 60.593 61.111 15.93 0.00 0.00 4.00
590 658 1.301874 CAACGCGAAACCCCCAGTA 60.302 57.895 15.93 0.00 0.00 2.74
591 659 1.301953 AACGCGAAACCCCCAGTAC 60.302 57.895 15.93 0.00 0.00 2.73
592 660 2.435410 CGCGAAACCCCCAGTACC 60.435 66.667 0.00 0.00 0.00 3.34
593 661 2.951101 CGCGAAACCCCCAGTACCT 61.951 63.158 0.00 0.00 0.00 3.08
594 662 1.377612 GCGAAACCCCCAGTACCTT 59.622 57.895 0.00 0.00 0.00 3.50
595 663 0.614812 GCGAAACCCCCAGTACCTTA 59.385 55.000 0.00 0.00 0.00 2.69
596 664 1.676916 GCGAAACCCCCAGTACCTTAC 60.677 57.143 0.00 0.00 0.00 2.34
597 665 1.065926 CGAAACCCCCAGTACCTTACC 60.066 57.143 0.00 0.00 0.00 2.85
598 666 0.986527 AAACCCCCAGTACCTTACCG 59.013 55.000 0.00 0.00 0.00 4.02
599 667 1.556373 AACCCCCAGTACCTTACCGC 61.556 60.000 0.00 0.00 0.00 5.68
600 668 2.738938 CCCCCAGTACCTTACCGCC 61.739 68.421 0.00 0.00 0.00 6.13
601 669 2.497770 CCCAGTACCTTACCGCCG 59.502 66.667 0.00 0.00 0.00 6.46
602 670 2.497770 CCAGTACCTTACCGCCGG 59.502 66.667 0.00 0.00 0.00 6.13
603 671 2.497770 CAGTACCTTACCGCCGGG 59.502 66.667 8.57 0.00 40.11 5.73
604 672 2.761213 AGTACCTTACCGCCGGGG 60.761 66.667 12.43 12.43 43.62 5.73
605 673 2.759560 GTACCTTACCGCCGGGGA 60.760 66.667 21.95 0.00 39.97 4.81
606 674 2.442643 TACCTTACCGCCGGGGAG 60.443 66.667 21.95 12.63 39.97 4.30
609 677 4.222847 CTTACCGCCGGGGAGCTC 62.223 72.222 21.95 4.71 39.97 4.09
621 689 2.517875 GAGCTCGGCGGTAGGGTA 60.518 66.667 7.21 0.00 0.00 3.69
622 690 2.832201 AGCTCGGCGGTAGGGTAC 60.832 66.667 7.21 0.00 0.00 3.34
623 691 3.142838 GCTCGGCGGTAGGGTACA 61.143 66.667 7.21 0.00 0.00 2.90
624 692 3.117372 CTCGGCGGTAGGGTACAG 58.883 66.667 7.21 0.00 0.00 2.74
625 693 1.751927 CTCGGCGGTAGGGTACAGT 60.752 63.158 7.21 0.00 0.00 3.55
626 694 0.464373 CTCGGCGGTAGGGTACAGTA 60.464 60.000 7.21 0.00 0.00 2.74
627 695 0.034574 TCGGCGGTAGGGTACAGTAA 60.035 55.000 7.21 0.00 0.00 2.24
628 696 0.383231 CGGCGGTAGGGTACAGTAAG 59.617 60.000 0.00 0.00 0.00 2.34
629 697 0.103755 GGCGGTAGGGTACAGTAAGC 59.896 60.000 0.00 0.00 0.00 3.09
630 698 1.109609 GCGGTAGGGTACAGTAAGCT 58.890 55.000 0.00 0.00 0.00 3.74
631 699 2.301346 GCGGTAGGGTACAGTAAGCTA 58.699 52.381 0.00 0.00 0.00 3.32
632 700 2.033927 GCGGTAGGGTACAGTAAGCTAC 59.966 54.545 0.00 0.00 0.00 3.58
633 701 2.620585 CGGTAGGGTACAGTAAGCTACC 59.379 54.545 0.00 0.00 33.89 3.18
634 702 2.620585 GGTAGGGTACAGTAAGCTACCG 59.379 54.545 0.00 0.00 33.56 4.02
635 703 2.521547 AGGGTACAGTAAGCTACCGT 57.478 50.000 0.00 0.00 33.56 4.83
636 704 2.373224 AGGGTACAGTAAGCTACCGTC 58.627 52.381 0.00 0.00 33.56 4.79
637 705 2.094675 GGGTACAGTAAGCTACCGTCA 58.905 52.381 0.00 0.00 33.56 4.35
638 706 2.493278 GGGTACAGTAAGCTACCGTCAA 59.507 50.000 0.00 0.00 33.56 3.18
639 707 3.428589 GGGTACAGTAAGCTACCGTCAAG 60.429 52.174 0.00 0.00 33.56 3.02
640 708 3.441572 GGTACAGTAAGCTACCGTCAAGA 59.558 47.826 0.00 0.00 0.00 3.02
641 709 3.572604 ACAGTAAGCTACCGTCAAGAC 57.427 47.619 0.00 0.00 0.00 3.01
642 710 2.230750 ACAGTAAGCTACCGTCAAGACC 59.769 50.000 0.00 0.00 0.00 3.85
643 711 2.492484 CAGTAAGCTACCGTCAAGACCT 59.508 50.000 0.00 0.00 0.00 3.85
644 712 2.492484 AGTAAGCTACCGTCAAGACCTG 59.508 50.000 0.00 0.00 0.00 4.00
645 713 1.339097 AAGCTACCGTCAAGACCTGT 58.661 50.000 0.00 0.00 0.00 4.00
646 714 0.603569 AGCTACCGTCAAGACCTGTG 59.396 55.000 0.00 0.00 0.00 3.66
647 715 0.389948 GCTACCGTCAAGACCTGTGG 60.390 60.000 0.00 0.00 0.00 4.17
648 716 0.389948 CTACCGTCAAGACCTGTGGC 60.390 60.000 0.00 0.00 0.00 5.01
649 717 2.149803 TACCGTCAAGACCTGTGGCG 62.150 60.000 0.00 0.00 43.57 5.69
650 718 2.738521 CGTCAAGACCTGTGGCGG 60.739 66.667 0.00 0.00 40.34 6.13
651 719 2.426023 GTCAAGACCTGTGGCGGT 59.574 61.111 0.00 0.00 40.80 5.68
652 720 1.669440 GTCAAGACCTGTGGCGGTA 59.331 57.895 0.00 0.00 37.42 4.02
653 721 0.389948 GTCAAGACCTGTGGCGGTAG 60.390 60.000 0.00 0.00 37.42 3.18
654 722 1.079127 CAAGACCTGTGGCGGTAGG 60.079 63.158 0.00 0.00 37.42 3.18
655 723 2.291043 AAGACCTGTGGCGGTAGGG 61.291 63.158 6.48 0.00 37.42 3.53
656 724 3.001406 GACCTGTGGCGGTAGGGT 61.001 66.667 6.48 0.00 37.42 4.34
657 725 1.683365 GACCTGTGGCGGTAGGGTA 60.683 63.158 6.48 0.00 37.42 3.69
658 726 1.673808 GACCTGTGGCGGTAGGGTAG 61.674 65.000 6.48 0.00 37.42 3.18
659 727 1.684734 CCTGTGGCGGTAGGGTAGT 60.685 63.158 0.00 0.00 0.00 2.73
660 728 1.515954 CTGTGGCGGTAGGGTAGTG 59.484 63.158 0.00 0.00 0.00 2.74
661 729 2.186125 GTGGCGGTAGGGTAGTGC 59.814 66.667 0.00 0.00 0.00 4.40
662 730 3.454573 TGGCGGTAGGGTAGTGCG 61.455 66.667 0.00 0.00 0.00 5.34
663 731 4.886121 GGCGGTAGGGTAGTGCGC 62.886 72.222 0.00 0.00 0.00 6.09
664 732 3.834799 GCGGTAGGGTAGTGCGCT 61.835 66.667 9.73 4.58 43.25 5.92
665 733 2.104331 CGGTAGGGTAGTGCGCTG 59.896 66.667 10.80 0.00 40.80 5.18
666 734 2.499685 GGTAGGGTAGTGCGCTGG 59.500 66.667 10.80 0.00 40.80 4.85
667 735 2.202892 GTAGGGTAGTGCGCTGGC 60.203 66.667 10.80 2.40 40.80 4.85
668 736 3.467226 TAGGGTAGTGCGCTGGCC 61.467 66.667 10.80 11.87 40.80 5.36
671 739 4.410400 GGTAGTGCGCTGGCCCTT 62.410 66.667 10.80 0.00 38.85 3.95
672 740 2.582436 GTAGTGCGCTGGCCCTTA 59.418 61.111 10.80 0.00 38.85 2.69
673 741 1.521681 GTAGTGCGCTGGCCCTTAG 60.522 63.158 10.80 0.00 38.85 2.18
674 742 2.731571 TAGTGCGCTGGCCCTTAGG 61.732 63.158 10.80 0.00 38.85 2.69
675 743 4.410400 GTGCGCTGGCCCTTAGGT 62.410 66.667 9.73 0.00 38.85 3.08
676 744 2.685743 TGCGCTGGCCCTTAGGTA 60.686 61.111 9.73 0.00 38.85 3.08
677 745 2.294839 TGCGCTGGCCCTTAGGTAA 61.295 57.895 9.73 0.00 38.85 2.85
678 746 1.818363 GCGCTGGCCCTTAGGTAAC 60.818 63.158 0.00 0.00 34.57 2.50
679 747 1.520787 CGCTGGCCCTTAGGTAACG 60.521 63.158 0.00 0.00 46.39 3.18
680 748 1.153229 GCTGGCCCTTAGGTAACGG 60.153 63.158 0.00 0.00 46.39 4.44
681 749 1.153229 CTGGCCCTTAGGTAACGGC 60.153 63.158 0.00 2.15 46.39 5.68
682 750 2.191375 GGCCCTTAGGTAACGGCC 59.809 66.667 11.58 11.58 45.62 6.13
683 751 2.202974 GCCCTTAGGTAACGGCCG 60.203 66.667 26.86 26.86 46.39 6.13
684 752 3.022710 GCCCTTAGGTAACGGCCGT 62.023 63.158 28.70 28.70 46.39 5.68
685 753 1.153509 CCCTTAGGTAACGGCCGTG 60.154 63.158 34.95 17.46 46.39 4.94
686 754 1.153509 CCTTAGGTAACGGCCGTGG 60.154 63.158 34.95 22.93 46.39 4.94
687 755 1.153509 CTTAGGTAACGGCCGTGGG 60.154 63.158 34.95 12.77 46.39 4.61
697 765 4.187810 GCCGTGGGCCGTTTATGC 62.188 66.667 0.00 0.00 44.06 3.14
704 772 4.187810 GCCGTTTATGCCACCGCC 62.188 66.667 0.00 0.00 0.00 6.13
705 773 2.748251 CCGTTTATGCCACCGCCA 60.748 61.111 0.00 0.00 0.00 5.69
706 774 2.760159 CCGTTTATGCCACCGCCAG 61.760 63.158 0.00 0.00 0.00 4.85
707 775 2.489751 GTTTATGCCACCGCCAGC 59.510 61.111 0.00 0.00 0.00 4.85
708 776 2.034843 TTTATGCCACCGCCAGCA 59.965 55.556 0.00 0.00 44.45 4.41
710 778 1.383456 TTTATGCCACCGCCAGCATC 61.383 55.000 7.43 0.00 46.58 3.91
711 779 3.772853 TATGCCACCGCCAGCATCC 62.773 63.158 7.43 0.00 46.58 3.51
714 782 3.479203 CCACCGCCAGCATCCCTA 61.479 66.667 0.00 0.00 0.00 3.53
715 783 2.109799 CACCGCCAGCATCCCTAG 59.890 66.667 0.00 0.00 0.00 3.02
716 784 3.866582 ACCGCCAGCATCCCTAGC 61.867 66.667 0.00 0.00 0.00 3.42
718 786 4.976925 CGCCAGCATCCCTAGCGG 62.977 72.222 0.00 0.00 45.88 5.52
719 787 3.866582 GCCAGCATCCCTAGCGGT 61.867 66.667 0.00 0.00 37.01 5.68
720 788 2.507854 GCCAGCATCCCTAGCGGTA 61.508 63.158 0.00 0.00 37.01 4.02
721 789 1.668294 CCAGCATCCCTAGCGGTAG 59.332 63.158 14.73 14.73 37.01 3.18
722 790 1.668294 CAGCATCCCTAGCGGTAGG 59.332 63.158 29.84 29.84 45.25 3.18
723 791 1.115930 CAGCATCCCTAGCGGTAGGT 61.116 60.000 32.70 17.32 44.27 3.08
724 792 0.398664 AGCATCCCTAGCGGTAGGTT 60.399 55.000 32.70 20.31 44.27 3.50
725 793 0.249911 GCATCCCTAGCGGTAGGTTG 60.250 60.000 32.70 28.59 44.27 3.77
726 794 0.393077 CATCCCTAGCGGTAGGTTGG 59.607 60.000 32.70 20.82 44.27 3.77
727 795 0.263765 ATCCCTAGCGGTAGGTTGGA 59.736 55.000 32.70 24.62 44.27 3.53
728 796 0.685458 TCCCTAGCGGTAGGTTGGAC 60.685 60.000 32.70 0.00 44.27 4.02
729 797 0.974010 CCCTAGCGGTAGGTTGGACA 60.974 60.000 32.70 0.00 44.27 4.02
730 798 0.175073 CCTAGCGGTAGGTTGGACAC 59.825 60.000 28.75 0.00 42.05 3.67
731 799 1.183549 CTAGCGGTAGGTTGGACACT 58.816 55.000 13.90 0.00 0.00 3.55
732 800 2.372264 CTAGCGGTAGGTTGGACACTA 58.628 52.381 13.90 0.00 0.00 2.74
733 801 0.893447 AGCGGTAGGTTGGACACTAC 59.107 55.000 0.00 0.00 39.01 2.73
736 804 0.533951 GGTAGGTTGGACACTACCGG 59.466 60.000 0.00 0.00 46.79 5.28
737 805 0.108472 GTAGGTTGGACACTACCGGC 60.108 60.000 0.00 0.00 45.56 6.13
738 806 1.597797 TAGGTTGGACACTACCGGCG 61.598 60.000 0.00 0.00 45.56 6.46
739 807 2.652530 GTTGGACACTACCGGCGA 59.347 61.111 9.30 0.00 0.00 5.54
740 808 1.445582 GTTGGACACTACCGGCGAG 60.446 63.158 9.30 0.77 0.00 5.03
741 809 3.291101 TTGGACACTACCGGCGAGC 62.291 63.158 9.30 0.00 0.00 5.03
742 810 4.509737 GGACACTACCGGCGAGCC 62.510 72.222 9.30 3.59 0.00 4.70
743 811 3.450115 GACACTACCGGCGAGCCT 61.450 66.667 9.30 0.00 0.00 4.58
744 812 3.701604 GACACTACCGGCGAGCCTG 62.702 68.421 9.30 8.30 0.00 4.85
745 813 4.514577 CACTACCGGCGAGCCTGG 62.515 72.222 9.30 18.54 36.39 4.45
747 815 2.831742 CTACCGGCGAGCCTGGTA 60.832 66.667 24.88 24.88 41.05 3.25
748 816 2.362760 TACCGGCGAGCCTGGTAA 60.363 61.111 24.60 14.30 39.97 2.85
749 817 2.624437 CTACCGGCGAGCCTGGTAAC 62.624 65.000 25.74 0.00 41.21 2.50
751 819 4.124351 CGGCGAGCCTGGTAACGA 62.124 66.667 12.70 0.00 42.51 3.85
752 820 2.499685 GGCGAGCCTGGTAACGAT 59.500 61.111 6.90 0.00 42.51 3.73
753 821 1.737816 GGCGAGCCTGGTAACGATA 59.262 57.895 6.90 0.00 42.51 2.92
754 822 0.318784 GGCGAGCCTGGTAACGATAG 60.319 60.000 6.90 0.00 42.51 2.08
755 823 0.940047 GCGAGCCTGGTAACGATAGC 60.940 60.000 11.80 0.00 42.67 2.97
756 824 0.384309 CGAGCCTGGTAACGATAGCA 59.616 55.000 4.48 4.48 42.67 3.49
757 825 1.202371 CGAGCCTGGTAACGATAGCAA 60.202 52.381 6.07 0.00 38.93 3.91
758 826 2.737359 CGAGCCTGGTAACGATAGCAAA 60.737 50.000 6.07 0.00 38.93 3.68
759 827 3.267483 GAGCCTGGTAACGATAGCAAAA 58.733 45.455 6.07 0.00 38.93 2.44
760 828 3.270877 AGCCTGGTAACGATAGCAAAAG 58.729 45.455 6.07 0.05 38.93 2.27
761 829 3.055385 AGCCTGGTAACGATAGCAAAAGA 60.055 43.478 6.07 0.00 38.93 2.52
762 830 3.687698 GCCTGGTAACGATAGCAAAAGAA 59.312 43.478 6.07 0.00 38.93 2.52
763 831 4.335594 GCCTGGTAACGATAGCAAAAGAAT 59.664 41.667 6.07 0.00 38.93 2.40
764 832 5.504173 GCCTGGTAACGATAGCAAAAGAATC 60.504 44.000 6.07 0.00 38.93 2.52
765 833 5.584649 CCTGGTAACGATAGCAAAAGAATCA 59.415 40.000 6.07 0.00 38.93 2.57
766 834 6.238211 CCTGGTAACGATAGCAAAAGAATCAG 60.238 42.308 6.07 0.00 38.93 2.90
767 835 6.403049 TGGTAACGATAGCAAAAGAATCAGA 58.597 36.000 1.76 0.00 36.63 3.27
768 836 7.047891 TGGTAACGATAGCAAAAGAATCAGAT 58.952 34.615 1.76 0.00 36.63 2.90
769 837 7.552687 TGGTAACGATAGCAAAAGAATCAGATT 59.447 33.333 1.76 0.00 36.63 2.40
770 838 8.398665 GGTAACGATAGCAAAAGAATCAGATTT 58.601 33.333 0.00 0.00 42.67 2.17
771 839 9.774742 GTAACGATAGCAAAAGAATCAGATTTT 57.225 29.630 0.00 0.00 42.67 1.82
798 866 6.625873 AAAACCTCAAACAGAAGTCAGATC 57.374 37.500 0.00 0.00 0.00 2.75
799 867 5.559148 AACCTCAAACAGAAGTCAGATCT 57.441 39.130 0.00 0.00 0.00 2.75
800 868 5.559148 ACCTCAAACAGAAGTCAGATCTT 57.441 39.130 0.00 0.00 0.00 2.40
801 869 5.303971 ACCTCAAACAGAAGTCAGATCTTG 58.696 41.667 0.00 0.00 0.00 3.02
802 870 5.163258 ACCTCAAACAGAAGTCAGATCTTGT 60.163 40.000 0.00 0.00 0.00 3.16
803 871 5.762218 CCTCAAACAGAAGTCAGATCTTGTT 59.238 40.000 0.00 0.00 0.00 2.83
804 872 6.931281 CCTCAAACAGAAGTCAGATCTTGTTA 59.069 38.462 8.29 0.00 0.00 2.41
805 873 7.442364 CCTCAAACAGAAGTCAGATCTTGTTAA 59.558 37.037 8.29 1.39 0.00 2.01
806 874 8.731275 TCAAACAGAAGTCAGATCTTGTTAAA 57.269 30.769 8.29 0.00 0.00 1.52
807 875 8.830580 TCAAACAGAAGTCAGATCTTGTTAAAG 58.169 33.333 8.29 3.67 34.45 1.85
808 876 8.616076 CAAACAGAAGTCAGATCTTGTTAAAGT 58.384 33.333 8.29 0.00 34.78 2.66
809 877 8.738645 AACAGAAGTCAGATCTTGTTAAAGTT 57.261 30.769 6.45 0.00 34.78 2.66
810 878 8.371770 ACAGAAGTCAGATCTTGTTAAAGTTC 57.628 34.615 0.00 0.00 34.78 3.01
811 879 7.987458 ACAGAAGTCAGATCTTGTTAAAGTTCA 59.013 33.333 0.00 0.00 35.43 3.18
812 880 8.830580 CAGAAGTCAGATCTTGTTAAAGTTCAA 58.169 33.333 0.00 0.00 35.43 2.69
813 881 8.831550 AGAAGTCAGATCTTGTTAAAGTTCAAC 58.168 33.333 0.00 0.00 35.43 3.18
814 882 7.178712 AGTCAGATCTTGTTAAAGTTCAACG 57.821 36.000 0.00 0.00 35.43 4.10
815 883 6.984474 AGTCAGATCTTGTTAAAGTTCAACGA 59.016 34.615 0.00 0.00 35.43 3.85
816 884 7.494625 AGTCAGATCTTGTTAAAGTTCAACGAA 59.505 33.333 0.00 0.00 35.43 3.85
817 885 8.120465 GTCAGATCTTGTTAAAGTTCAACGAAA 58.880 33.333 0.00 0.00 35.43 3.46
818 886 8.335356 TCAGATCTTGTTAAAGTTCAACGAAAG 58.665 33.333 0.00 0.00 35.43 2.62
819 887 7.587757 CAGATCTTGTTAAAGTTCAACGAAAGG 59.412 37.037 0.00 0.00 35.43 3.11
820 888 6.126568 TCTTGTTAAAGTTCAACGAAAGGG 57.873 37.500 0.00 0.00 34.78 3.95
821 889 5.648960 TCTTGTTAAAGTTCAACGAAAGGGT 59.351 36.000 0.00 0.00 34.78 4.34
822 890 5.488645 TGTTAAAGTTCAACGAAAGGGTC 57.511 39.130 0.00 0.00 0.00 4.46
823 891 4.942483 TGTTAAAGTTCAACGAAAGGGTCA 59.058 37.500 0.00 0.00 0.00 4.02
824 892 5.415077 TGTTAAAGTTCAACGAAAGGGTCAA 59.585 36.000 0.00 0.00 0.00 3.18
825 893 6.072064 TGTTAAAGTTCAACGAAAGGGTCAAA 60.072 34.615 0.00 0.00 0.00 2.69
826 894 5.394224 AAAGTTCAACGAAAGGGTCAAAA 57.606 34.783 0.00 0.00 0.00 2.44
827 895 4.365899 AGTTCAACGAAAGGGTCAAAAC 57.634 40.909 0.00 0.00 0.00 2.43
828 896 3.759618 AGTTCAACGAAAGGGTCAAAACA 59.240 39.130 0.00 0.00 0.00 2.83
829 897 3.768468 TCAACGAAAGGGTCAAAACAC 57.232 42.857 0.00 0.00 0.00 3.32
830 898 2.096174 TCAACGAAAGGGTCAAAACACG 59.904 45.455 0.00 0.00 32.44 4.49
831 899 1.018910 ACGAAAGGGTCAAAACACGG 58.981 50.000 0.00 0.00 32.44 4.94
832 900 1.301423 CGAAAGGGTCAAAACACGGA 58.699 50.000 0.00 0.00 32.44 4.69
833 901 1.671845 CGAAAGGGTCAAAACACGGAA 59.328 47.619 0.00 0.00 32.44 4.30
834 902 2.292292 CGAAAGGGTCAAAACACGGAAT 59.708 45.455 0.00 0.00 32.44 3.01
835 903 3.243267 CGAAAGGGTCAAAACACGGAATT 60.243 43.478 0.00 0.00 32.44 2.17
836 904 4.689071 GAAAGGGTCAAAACACGGAATTT 58.311 39.130 0.00 0.00 32.44 1.82
837 905 4.746535 AAGGGTCAAAACACGGAATTTT 57.253 36.364 0.00 0.00 32.44 1.82
838 906 4.053469 AGGGTCAAAACACGGAATTTTG 57.947 40.909 12.31 12.31 44.74 2.44
839 907 2.542178 GGGTCAAAACACGGAATTTTGC 59.458 45.455 13.24 9.71 43.62 3.68
840 908 2.542178 GGTCAAAACACGGAATTTTGCC 59.458 45.455 13.24 13.25 43.62 4.52
841 909 3.453424 GTCAAAACACGGAATTTTGCCT 58.547 40.909 13.24 0.00 43.62 4.75
842 910 3.868661 GTCAAAACACGGAATTTTGCCTT 59.131 39.130 13.24 0.00 43.62 4.35
893 961 3.883744 CTTCTGTGCCCGCTCCGTT 62.884 63.158 0.00 0.00 0.00 4.44
990 1058 0.041238 TCCACCCACACCACCAAAAA 59.959 50.000 0.00 0.00 0.00 1.94
1153 1221 4.771356 CGCCGGCGTCGAAGAAGA 62.771 66.667 39.71 0.00 38.59 2.87
1377 1445 2.460918 CTTGACGGTATCATGGTCGAC 58.539 52.381 7.13 7.13 37.11 4.20
1530 1598 5.712217 TTATACGAGAACATTTCAAGCGG 57.288 39.130 0.00 0.00 0.00 5.52
1636 1707 8.364482 GCAAATTAGCTTTTGTTTGTTTGTTTG 58.636 29.630 11.51 0.00 38.55 2.93
1637 1708 9.392021 CAAATTAGCTTTTGTTTGTTTGTTTGT 57.608 25.926 0.00 0.00 32.99 2.83
1638 1709 9.958234 AAATTAGCTTTTGTTTGTTTGTTTGTT 57.042 22.222 0.00 0.00 0.00 2.83
1639 1710 9.958234 AATTAGCTTTTGTTTGTTTGTTTGTTT 57.042 22.222 0.00 0.00 0.00 2.83
1702 1790 5.949952 AGTTTGGTTTAGTCCTCTGTTTGTT 59.050 36.000 0.00 0.00 0.00 2.83
1703 1791 5.828299 TTGGTTTAGTCCTCTGTTTGTTG 57.172 39.130 0.00 0.00 0.00 3.33
1705 1793 5.991861 TGGTTTAGTCCTCTGTTTGTTGTA 58.008 37.500 0.00 0.00 0.00 2.41
1706 1794 6.053005 TGGTTTAGTCCTCTGTTTGTTGTAG 58.947 40.000 0.00 0.00 0.00 2.74
1707 1795 6.053650 GGTTTAGTCCTCTGTTTGTTGTAGT 58.946 40.000 0.00 0.00 0.00 2.73
1708 1796 6.202379 GGTTTAGTCCTCTGTTTGTTGTAGTC 59.798 42.308 0.00 0.00 0.00 2.59
1709 1797 4.338379 AGTCCTCTGTTTGTTGTAGTCC 57.662 45.455 0.00 0.00 0.00 3.85
1710 1798 3.967987 AGTCCTCTGTTTGTTGTAGTCCT 59.032 43.478 0.00 0.00 0.00 3.85
1711 1799 4.039366 AGTCCTCTGTTTGTTGTAGTCCTC 59.961 45.833 0.00 0.00 0.00 3.71
1712 1800 4.039366 GTCCTCTGTTTGTTGTAGTCCTCT 59.961 45.833 0.00 0.00 0.00 3.69
1713 1801 4.039245 TCCTCTGTTTGTTGTAGTCCTCTG 59.961 45.833 0.00 0.00 0.00 3.35
1714 1802 4.202264 CCTCTGTTTGTTGTAGTCCTCTGT 60.202 45.833 0.00 0.00 0.00 3.41
1715 1803 5.353394 TCTGTTTGTTGTAGTCCTCTGTT 57.647 39.130 0.00 0.00 0.00 3.16
1716 1804 5.741011 TCTGTTTGTTGTAGTCCTCTGTTT 58.259 37.500 0.00 0.00 0.00 2.83
1717 1805 5.584649 TCTGTTTGTTGTAGTCCTCTGTTTG 59.415 40.000 0.00 0.00 0.00 2.93
1718 1806 5.250200 TGTTTGTTGTAGTCCTCTGTTTGT 58.750 37.500 0.00 0.00 0.00 2.83
1719 1807 5.353123 TGTTTGTTGTAGTCCTCTGTTTGTC 59.647 40.000 0.00 0.00 0.00 3.18
1720 1808 5.353394 TTGTTGTAGTCCTCTGTTTGTCT 57.647 39.130 0.00 0.00 0.00 3.41
1721 1809 5.353394 TGTTGTAGTCCTCTGTTTGTCTT 57.647 39.130 0.00 0.00 0.00 3.01
1722 1810 6.474140 TGTTGTAGTCCTCTGTTTGTCTTA 57.526 37.500 0.00 0.00 0.00 2.10
1723 1811 6.513180 TGTTGTAGTCCTCTGTTTGTCTTAG 58.487 40.000 0.00 0.00 0.00 2.18
1726 1814 3.588569 AGTCCTCTGTTTGTCTTAGGGT 58.411 45.455 0.00 0.00 0.00 4.34
1762 1850 4.974438 ACTGGCCGGAAGTCCCCA 62.974 66.667 21.41 0.00 0.00 4.96
1768 1856 1.750399 CCGGAAGTCCCCAAGCATG 60.750 63.158 0.00 0.00 0.00 4.06
1769 1857 1.002134 CGGAAGTCCCCAAGCATGT 60.002 57.895 0.00 0.00 0.00 3.21
1770 1858 1.026718 CGGAAGTCCCCAAGCATGTC 61.027 60.000 0.00 0.00 0.00 3.06
1771 1859 1.026718 GGAAGTCCCCAAGCATGTCG 61.027 60.000 0.00 0.00 0.00 4.35
1772 1860 0.321653 GAAGTCCCCAAGCATGTCGT 60.322 55.000 0.00 0.00 0.00 4.34
1773 1861 0.606401 AAGTCCCCAAGCATGTCGTG 60.606 55.000 0.00 0.00 0.00 4.35
1783 1871 2.754648 CATGTCGTGCCCAGTAGTG 58.245 57.895 0.00 0.00 0.00 2.74
1784 1872 1.079127 ATGTCGTGCCCAGTAGTGC 60.079 57.895 0.00 0.00 0.00 4.40
1785 1873 1.544825 ATGTCGTGCCCAGTAGTGCT 61.545 55.000 0.00 0.00 0.00 4.40
1786 1874 1.004918 GTCGTGCCCAGTAGTGCTT 60.005 57.895 0.00 0.00 0.00 3.91
1787 1875 1.014564 GTCGTGCCCAGTAGTGCTTC 61.015 60.000 0.00 0.00 0.00 3.86
1788 1876 1.005037 CGTGCCCAGTAGTGCTTCA 60.005 57.895 0.00 0.00 0.00 3.02
1833 1921 2.467880 CCAGACCTGGGCTACTTTCTA 58.532 52.381 0.00 0.00 46.81 2.10
1837 1925 5.501156 CAGACCTGGGCTACTTTCTATTTT 58.499 41.667 0.00 0.00 0.00 1.82
1866 1957 5.163622 GGCGTATGGGATGATTTATTGATGG 60.164 44.000 0.00 0.00 0.00 3.51
1879 1970 9.146586 TGATTTATTGATGGAAAATAAGGAGGG 57.853 33.333 0.00 0.00 32.58 4.30
1887 1978 2.044123 AAATAAGGAGGGCGCTGAAG 57.956 50.000 8.56 0.00 0.00 3.02
1888 1979 0.181350 AATAAGGAGGGCGCTGAAGG 59.819 55.000 8.56 0.00 0.00 3.46
1889 1980 0.983378 ATAAGGAGGGCGCTGAAGGT 60.983 55.000 8.56 0.00 0.00 3.50
1890 1981 0.324923 TAAGGAGGGCGCTGAAGGTA 60.325 55.000 8.56 0.00 0.00 3.08
1891 1982 0.983378 AAGGAGGGCGCTGAAGGTAT 60.983 55.000 8.56 0.00 0.00 2.73
1892 1983 0.983378 AGGAGGGCGCTGAAGGTATT 60.983 55.000 8.56 0.00 0.00 1.89
1893 1984 0.756903 GGAGGGCGCTGAAGGTATTA 59.243 55.000 8.56 0.00 0.00 0.98
1894 1985 1.140252 GGAGGGCGCTGAAGGTATTAA 59.860 52.381 8.56 0.00 0.00 1.40
1895 1986 2.484889 GAGGGCGCTGAAGGTATTAAG 58.515 52.381 8.56 0.00 0.00 1.85
1896 1987 0.945099 GGGCGCTGAAGGTATTAAGC 59.055 55.000 7.64 0.00 39.29 3.09
1902 1993 3.996480 GCTGAAGGTATTAAGCGATCCT 58.004 45.455 0.00 0.00 33.12 3.24
1903 1994 4.381411 GCTGAAGGTATTAAGCGATCCTT 58.619 43.478 0.00 0.00 40.59 3.36
1904 1995 4.212214 GCTGAAGGTATTAAGCGATCCTTG 59.788 45.833 0.00 0.00 38.42 3.61
1905 1996 4.127171 TGAAGGTATTAAGCGATCCTTGC 58.873 43.478 0.00 0.00 38.42 4.01
1906 1997 3.127425 AGGTATTAAGCGATCCTTGCC 57.873 47.619 6.68 4.63 34.95 4.52
1907 1998 2.438021 AGGTATTAAGCGATCCTTGCCA 59.562 45.455 6.68 0.00 34.95 4.92
1908 1999 2.808543 GGTATTAAGCGATCCTTGCCAG 59.191 50.000 6.68 0.00 34.95 4.85
1909 2000 1.312815 ATTAAGCGATCCTTGCCAGC 58.687 50.000 6.68 0.00 34.95 4.85
1910 2001 0.253044 TTAAGCGATCCTTGCCAGCT 59.747 50.000 6.68 0.00 40.20 4.24
1950 2041 5.299279 GGTTCAGAGGATCAGTTTCAACAAA 59.701 40.000 0.00 0.00 37.82 2.83
1980 2071 5.055265 TCCACTTTACAAAGGATTGTCCA 57.945 39.130 6.66 0.00 46.78 4.02
1986 2077 1.541147 ACAAAGGATTGTCCATGCGTG 59.459 47.619 0.00 0.00 46.78 5.34
2024 2115 3.726557 ATCTGTTCTGGAGATTTGCCA 57.273 42.857 0.00 0.00 0.00 4.92
2046 2137 4.455533 CAGACATCCTTCAAAACATTCGGA 59.544 41.667 0.00 0.00 0.00 4.55
2069 2160 0.748005 CGCGTGGATCCTTCCCAATT 60.748 55.000 14.23 0.00 41.83 2.32
2083 2174 6.161526 TCCTTCCCAATTAAATACTTAGGCCT 59.838 38.462 11.78 11.78 0.00 5.19
2092 2183 5.632034 AAATACTTAGGCCTTCCGATCTT 57.368 39.130 12.58 0.00 37.47 2.40
2093 2184 5.632034 AATACTTAGGCCTTCCGATCTTT 57.368 39.130 12.58 0.00 37.47 2.52
2101 2192 0.443869 CTTCCGATCTTTGTGTGGCG 59.556 55.000 0.00 0.00 0.00 5.69
2130 2221 5.382664 AAAGGTTGACTTCCAGTTCCTAA 57.617 39.130 0.00 0.00 38.85 2.69
2143 2234 3.113043 AGTTCCTAAAGGATAAGGCGGT 58.887 45.455 0.00 0.00 44.98 5.68
2173 2264 2.203567 CCCTTGGGACGGGCAAAA 60.204 61.111 0.00 0.00 34.32 2.44
2181 2272 0.953960 GGACGGGCAAAAGATCACGT 60.954 55.000 0.00 0.00 37.26 4.49
2188 2279 1.133025 GCAAAAGATCACGTCCATGGG 59.867 52.381 13.02 0.00 0.00 4.00
2197 2288 2.746277 GTCCATGGGACGCACCAC 60.746 66.667 13.02 0.00 43.14 4.16
2234 2325 2.158549 GCTTTCCTCCCAAGCCATCTAT 60.159 50.000 0.00 0.00 40.79 1.98
2249 2340 4.757149 GCCATCTATTTTATCACTCCGCTT 59.243 41.667 0.00 0.00 0.00 4.68
2252 2343 6.073548 CCATCTATTTTATCACTCCGCTTGTC 60.074 42.308 0.00 0.00 0.00 3.18
2258 2349 3.692406 ACTCCGCTTGTCGTCCCC 61.692 66.667 0.00 0.00 36.19 4.81
2270 2361 3.948719 GTCCCCCAAGCACCGTCA 61.949 66.667 0.00 0.00 0.00 4.35
2301 2392 7.990917 TCTTAACAAGTTTAAGTGTGCATTCA 58.009 30.769 0.00 0.00 34.51 2.57
2315 2406 3.006752 GTGCATTCATTTTTGAGGGGACA 59.993 43.478 0.00 0.00 0.00 4.02
2316 2407 3.258872 TGCATTCATTTTTGAGGGGACAG 59.741 43.478 0.00 0.00 0.00 3.51
2326 2417 1.056660 GAGGGGACAGACAAGACCAA 58.943 55.000 0.00 0.00 0.00 3.67
2331 2422 1.168714 GACAGACAAGACCAATGGGC 58.831 55.000 3.55 0.00 37.90 5.36
2339 2430 0.116940 AGACCAATGGGCCCAAATGT 59.883 50.000 32.58 25.06 37.90 2.71
2414 2505 5.179703 GTGCTAAACACGGGCAAATTTGC 62.180 47.826 30.82 30.82 45.84 3.68
2428 2519 2.938956 ATTTGCTAGGGCGCTAAGAT 57.061 45.000 12.05 1.26 42.25 2.40
2432 2523 2.036387 TGCTAGGGCGCTAAGATTACA 58.964 47.619 12.05 1.39 42.25 2.41
2437 2528 2.438021 AGGGCGCTAAGATTACATTGGA 59.562 45.455 7.64 0.00 0.00 3.53
2438 2529 3.073062 AGGGCGCTAAGATTACATTGGAT 59.927 43.478 7.64 0.00 0.00 3.41
2439 2530 3.821033 GGGCGCTAAGATTACATTGGATT 59.179 43.478 7.64 0.00 0.00 3.01
2440 2531 4.278419 GGGCGCTAAGATTACATTGGATTT 59.722 41.667 7.64 0.00 0.00 2.17
2441 2532 5.215160 GGCGCTAAGATTACATTGGATTTG 58.785 41.667 7.64 0.00 0.00 2.32
2442 2533 5.008613 GGCGCTAAGATTACATTGGATTTGA 59.991 40.000 7.64 0.00 0.00 2.69
2443 2534 6.294176 GGCGCTAAGATTACATTGGATTTGAT 60.294 38.462 7.64 0.00 0.00 2.57
2444 2535 7.141363 GCGCTAAGATTACATTGGATTTGATT 58.859 34.615 0.00 0.00 0.00 2.57
2445 2536 7.649306 GCGCTAAGATTACATTGGATTTGATTT 59.351 33.333 0.00 0.00 0.00 2.17
2446 2537 8.961092 CGCTAAGATTACATTGGATTTGATTTG 58.039 33.333 0.00 0.00 0.00 2.32
2450 2541 9.865321 AAGATTACATTGGATTTGATTTGAGTG 57.135 29.630 0.00 0.00 0.00 3.51
2451 2542 9.246670 AGATTACATTGGATTTGATTTGAGTGA 57.753 29.630 0.00 0.00 0.00 3.41
2452 2543 9.512435 GATTACATTGGATTTGATTTGAGTGAG 57.488 33.333 0.00 0.00 0.00 3.51
2453 2544 8.634335 TTACATTGGATTTGATTTGAGTGAGA 57.366 30.769 0.00 0.00 0.00 3.27
2454 2545 7.154435 ACATTGGATTTGATTTGAGTGAGAG 57.846 36.000 0.00 0.00 0.00 3.20
2455 2546 6.152323 ACATTGGATTTGATTTGAGTGAGAGG 59.848 38.462 0.00 0.00 0.00 3.69
2456 2547 5.503634 TGGATTTGATTTGAGTGAGAGGA 57.496 39.130 0.00 0.00 0.00 3.71
2457 2548 5.494724 TGGATTTGATTTGAGTGAGAGGAG 58.505 41.667 0.00 0.00 0.00 3.69
2458 2549 4.335037 GGATTTGATTTGAGTGAGAGGAGC 59.665 45.833 0.00 0.00 0.00 4.70
2459 2550 3.340814 TTGATTTGAGTGAGAGGAGCC 57.659 47.619 0.00 0.00 0.00 4.70
2460 2551 2.259917 TGATTTGAGTGAGAGGAGCCA 58.740 47.619 0.00 0.00 0.00 4.75
2461 2552 2.639347 TGATTTGAGTGAGAGGAGCCAA 59.361 45.455 0.00 0.00 0.00 4.52
2462 2553 2.550830 TTTGAGTGAGAGGAGCCAAC 57.449 50.000 0.00 0.00 0.00 3.77
2463 2554 1.423584 TTGAGTGAGAGGAGCCAACA 58.576 50.000 0.00 0.00 0.00 3.33
2464 2555 1.423584 TGAGTGAGAGGAGCCAACAA 58.576 50.000 0.00 0.00 0.00 2.83
2465 2556 1.768275 TGAGTGAGAGGAGCCAACAAA 59.232 47.619 0.00 0.00 0.00 2.83
2466 2557 2.224378 TGAGTGAGAGGAGCCAACAAAG 60.224 50.000 0.00 0.00 0.00 2.77
2467 2558 2.037772 GAGTGAGAGGAGCCAACAAAGA 59.962 50.000 0.00 0.00 0.00 2.52
2468 2559 2.641815 AGTGAGAGGAGCCAACAAAGAT 59.358 45.455 0.00 0.00 0.00 2.40
2469 2560 3.006247 GTGAGAGGAGCCAACAAAGATC 58.994 50.000 0.00 0.00 0.00 2.75
2470 2561 2.639347 TGAGAGGAGCCAACAAAGATCA 59.361 45.455 0.00 0.00 0.00 2.92
2471 2562 3.265221 TGAGAGGAGCCAACAAAGATCAT 59.735 43.478 0.00 0.00 0.00 2.45
2472 2563 3.618351 AGAGGAGCCAACAAAGATCATG 58.382 45.455 0.00 0.00 0.00 3.07
2473 2564 2.686915 GAGGAGCCAACAAAGATCATGG 59.313 50.000 0.00 0.00 36.00 3.66
2474 2565 1.753073 GGAGCCAACAAAGATCATGGG 59.247 52.381 0.00 0.00 33.45 4.00
2475 2566 2.450476 GAGCCAACAAAGATCATGGGT 58.550 47.619 0.00 0.72 45.70 4.51
2476 2567 2.827921 GAGCCAACAAAGATCATGGGTT 59.172 45.455 0.00 0.00 43.27 4.11
2477 2568 2.564062 AGCCAACAAAGATCATGGGTTG 59.436 45.455 10.68 10.68 40.57 3.77
2479 2570 2.963432 CAACAAAGATCATGGGTTGGC 58.037 47.619 0.00 0.00 36.19 4.52
2480 2571 2.299582 CAACAAAGATCATGGGTTGGCA 59.700 45.455 0.00 0.00 36.19 4.92
2481 2572 2.823959 ACAAAGATCATGGGTTGGCAT 58.176 42.857 0.00 0.00 0.00 4.40
2482 2573 2.498481 ACAAAGATCATGGGTTGGCATG 59.502 45.455 0.00 0.00 0.00 4.06
2483 2574 1.784358 AAGATCATGGGTTGGCATGG 58.216 50.000 0.00 0.00 0.00 3.66
2484 2575 0.105862 AGATCATGGGTTGGCATGGG 60.106 55.000 0.00 0.00 0.00 4.00
2485 2576 1.751349 GATCATGGGTTGGCATGGGC 61.751 60.000 0.00 0.00 40.13 5.36
2486 2577 2.533037 ATCATGGGTTGGCATGGGCA 62.533 55.000 0.00 0.00 43.71 5.36
2487 2578 2.122280 ATGGGTTGGCATGGGCAA 59.878 55.556 0.70 0.70 45.54 4.52
2501 2592 2.555123 GGCAACCATGTGATGACGT 58.445 52.632 0.00 0.00 0.00 4.34
2502 2593 0.168788 GGCAACCATGTGATGACGTG 59.831 55.000 0.00 0.00 38.64 4.49
2506 2597 4.623814 CATGTGATGACGTGGGCT 57.376 55.556 0.00 0.00 35.70 5.19
2507 2598 3.758715 CATGTGATGACGTGGGCTA 57.241 52.632 0.00 0.00 35.70 3.93
2508 2599 1.290203 CATGTGATGACGTGGGCTAC 58.710 55.000 0.00 0.00 35.70 3.58
2521 2612 4.795970 GTGGGCTACGACATTATTTGAG 57.204 45.455 0.00 0.00 0.00 3.02
2522 2613 4.189231 GTGGGCTACGACATTATTTGAGT 58.811 43.478 0.00 0.00 0.00 3.41
2523 2614 4.034048 GTGGGCTACGACATTATTTGAGTG 59.966 45.833 0.00 0.00 0.00 3.51
2524 2615 4.081365 TGGGCTACGACATTATTTGAGTGA 60.081 41.667 0.00 0.00 0.00 3.41
2525 2616 4.873827 GGGCTACGACATTATTTGAGTGAA 59.126 41.667 0.00 0.00 0.00 3.18
2526 2617 5.353123 GGGCTACGACATTATTTGAGTGAAA 59.647 40.000 0.00 0.00 0.00 2.69
2527 2618 6.456988 GGGCTACGACATTATTTGAGTGAAAG 60.457 42.308 0.00 0.00 0.00 2.62
2528 2619 6.456988 GGCTACGACATTATTTGAGTGAAAGG 60.457 42.308 0.00 0.00 0.00 3.11
2529 2620 6.312918 GCTACGACATTATTTGAGTGAAAGGA 59.687 38.462 0.00 0.00 0.00 3.36
2530 2621 6.727824 ACGACATTATTTGAGTGAAAGGAG 57.272 37.500 0.00 0.00 0.00 3.69
2531 2622 5.122396 ACGACATTATTTGAGTGAAAGGAGC 59.878 40.000 0.00 0.00 0.00 4.70
2532 2623 5.447818 CGACATTATTTGAGTGAAAGGAGCC 60.448 44.000 0.00 0.00 0.00 4.70
2533 2624 5.324409 ACATTATTTGAGTGAAAGGAGCCA 58.676 37.500 0.00 0.00 0.00 4.75
2534 2625 5.774690 ACATTATTTGAGTGAAAGGAGCCAA 59.225 36.000 0.00 0.00 0.00 4.52
2535 2626 5.705609 TTATTTGAGTGAAAGGAGCCAAC 57.294 39.130 0.00 0.00 0.00 3.77
2536 2627 2.727123 TTGAGTGAAAGGAGCCAACA 57.273 45.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.361668 CCCTTCGCCAGTTGATGACG 61.362 60.000 0.00 0.00 35.91 4.35
19 20 1.648467 GCCCTTCGCCAGTTGATGAC 61.648 60.000 0.00 0.00 0.00 3.06
31 32 4.752879 TTTCGCCTCCGCCCTTCG 62.753 66.667 0.00 0.00 38.08 3.79
40 41 1.208614 CTGCTGCAGTTTTCGCCTC 59.791 57.895 21.21 0.00 0.00 4.70
52 53 4.065281 CCTTGCCTTGCCTGCTGC 62.065 66.667 0.00 0.00 41.77 5.25
56 57 2.993264 CCCACCTTGCCTTGCCTG 60.993 66.667 0.00 0.00 0.00 4.85
57 58 3.185203 TCCCACCTTGCCTTGCCT 61.185 61.111 0.00 0.00 0.00 4.75
82 83 0.527817 CTAGTTGGCATCCGACCGTC 60.528 60.000 0.00 0.00 38.65 4.79
96 97 2.663196 GGAGGCGGCACACTAGTT 59.337 61.111 13.08 0.00 0.00 2.24
98 99 4.514577 CCGGAGGCGGCACACTAG 62.515 72.222 13.08 0.00 46.14 2.57
115 116 2.109126 GCGGATCCACCTGTTCAGC 61.109 63.158 13.41 0.00 36.31 4.26
155 156 2.171448 AGCTCCTTGTATGTTAGCCCTG 59.829 50.000 0.00 0.00 33.63 4.45
159 160 4.392921 TCAGAGCTCCTTGTATGTTAGC 57.607 45.455 10.93 0.00 0.00 3.09
168 169 3.523547 CAGACATCTTCAGAGCTCCTTG 58.476 50.000 10.93 2.98 0.00 3.61
169 170 2.093553 GCAGACATCTTCAGAGCTCCTT 60.094 50.000 10.93 0.00 0.00 3.36
173 174 0.540923 GGGCAGACATCTTCAGAGCT 59.459 55.000 0.00 0.00 0.00 4.09
191 192 3.577649 TCAGACAAGTTTAGAGAGCGG 57.422 47.619 0.00 0.00 0.00 5.52
227 228 7.444299 ACATAGTTTCACAAAAGCCAATGAAT 58.556 30.769 0.00 0.00 31.45 2.57
230 231 9.853555 TTATACATAGTTTCACAAAAGCCAATG 57.146 29.630 0.00 0.00 0.00 2.82
353 419 9.740239 CTTAAATATGCAAAGCTCACACAATAT 57.260 29.630 0.00 0.00 0.00 1.28
354 420 8.190122 CCTTAAATATGCAAAGCTCACACAATA 58.810 33.333 0.00 0.00 0.00 1.90
355 421 7.037438 CCTTAAATATGCAAAGCTCACACAAT 58.963 34.615 0.00 0.00 0.00 2.71
356 422 6.015519 ACCTTAAATATGCAAAGCTCACACAA 60.016 34.615 0.00 0.00 0.00 3.33
357 423 5.476599 ACCTTAAATATGCAAAGCTCACACA 59.523 36.000 0.00 0.00 0.00 3.72
358 424 5.954335 ACCTTAAATATGCAAAGCTCACAC 58.046 37.500 0.00 0.00 0.00 3.82
359 425 6.588719 AACCTTAAATATGCAAAGCTCACA 57.411 33.333 0.00 0.00 0.00 3.58
453 520 9.424319 TGTTTTGCAAGTTTTAGTGATTGTTTA 57.576 25.926 0.00 0.00 0.00 2.01
473 540 2.354199 GGCCATGTGGTTTTGTGTTTTG 59.646 45.455 0.00 0.00 37.57 2.44
479 547 1.627864 GTAGGGCCATGTGGTTTTGT 58.372 50.000 6.18 0.00 37.57 2.83
508 576 0.886563 GTGATATCCTACCGTCGGGG 59.113 60.000 17.28 8.30 43.62 5.73
511 579 2.621998 AGGTTGTGATATCCTACCGTCG 59.378 50.000 14.36 0.00 34.09 5.12
536 604 2.365617 CCGAGAACTGCATATACCTGGT 59.634 50.000 4.05 4.05 0.00 4.00
540 608 4.940463 TGTAACCGAGAACTGCATATACC 58.060 43.478 0.00 0.00 0.00 2.73
541 609 4.444720 GCTGTAACCGAGAACTGCATATAC 59.555 45.833 0.00 0.00 39.52 1.47
542 610 4.098807 TGCTGTAACCGAGAACTGCATATA 59.901 41.667 10.04 0.00 43.03 0.86
543 611 3.118775 TGCTGTAACCGAGAACTGCATAT 60.119 43.478 10.04 0.00 43.03 1.78
544 612 2.232696 TGCTGTAACCGAGAACTGCATA 59.767 45.455 10.04 0.00 43.03 3.14
545 613 1.001974 TGCTGTAACCGAGAACTGCAT 59.998 47.619 10.04 0.00 43.03 3.96
546 614 0.391228 TGCTGTAACCGAGAACTGCA 59.609 50.000 10.04 10.04 44.84 4.41
547 615 0.790814 GTGCTGTAACCGAGAACTGC 59.209 55.000 0.00 0.00 39.98 4.40
548 616 1.060713 CGTGCTGTAACCGAGAACTG 58.939 55.000 0.00 0.00 0.00 3.16
549 617 0.672342 ACGTGCTGTAACCGAGAACT 59.328 50.000 0.00 0.00 0.00 3.01
550 618 1.494824 AACGTGCTGTAACCGAGAAC 58.505 50.000 0.00 0.00 0.00 3.01
551 619 1.862201 CAAACGTGCTGTAACCGAGAA 59.138 47.619 0.00 0.00 0.00 2.87
552 620 1.493772 CAAACGTGCTGTAACCGAGA 58.506 50.000 0.00 0.00 0.00 4.04
567 635 1.947146 GGGGTTTCGCGTTGCAAAC 60.947 57.895 5.77 9.36 45.31 2.93
568 636 2.413765 GGGGTTTCGCGTTGCAAA 59.586 55.556 5.77 0.00 0.00 3.68
569 637 3.597728 GGGGGTTTCGCGTTGCAA 61.598 61.111 5.77 0.00 0.00 4.08
570 638 4.877619 TGGGGGTTTCGCGTTGCA 62.878 61.111 5.77 0.00 0.00 4.08
571 639 4.038080 CTGGGGGTTTCGCGTTGC 62.038 66.667 5.77 0.00 0.00 4.17
572 640 1.301874 TACTGGGGGTTTCGCGTTG 60.302 57.895 5.77 0.00 0.00 4.10
573 641 1.301953 GTACTGGGGGTTTCGCGTT 60.302 57.895 5.77 0.00 0.00 4.84
574 642 2.344872 GTACTGGGGGTTTCGCGT 59.655 61.111 5.77 0.00 0.00 6.01
575 643 2.435410 GGTACTGGGGGTTTCGCG 60.435 66.667 0.00 0.00 0.00 5.87
576 644 0.614812 TAAGGTACTGGGGGTTTCGC 59.385 55.000 0.00 0.00 40.86 4.70
577 645 1.065926 GGTAAGGTACTGGGGGTTTCG 60.066 57.143 0.00 0.00 40.86 3.46
578 646 1.065926 CGGTAAGGTACTGGGGGTTTC 60.066 57.143 0.00 0.00 40.86 2.78
579 647 0.986527 CGGTAAGGTACTGGGGGTTT 59.013 55.000 0.00 0.00 40.86 3.27
580 648 1.556373 GCGGTAAGGTACTGGGGGTT 61.556 60.000 0.00 0.00 40.86 4.11
581 649 1.991722 GCGGTAAGGTACTGGGGGT 60.992 63.158 0.00 0.00 40.86 4.95
582 650 2.738938 GGCGGTAAGGTACTGGGGG 61.739 68.421 0.00 0.00 40.86 5.40
583 651 2.905681 GGCGGTAAGGTACTGGGG 59.094 66.667 0.00 0.00 40.86 4.96
584 652 2.497770 CGGCGGTAAGGTACTGGG 59.502 66.667 0.00 0.00 40.86 4.45
585 653 2.497770 CCGGCGGTAAGGTACTGG 59.502 66.667 19.97 0.00 40.86 4.00
586 654 2.497770 CCCGGCGGTAAGGTACTG 59.502 66.667 26.32 1.35 40.86 2.74
588 656 2.759560 TCCCCGGCGGTAAGGTAC 60.760 66.667 26.32 0.00 0.00 3.34
589 657 2.442643 CTCCCCGGCGGTAAGGTA 60.443 66.667 26.32 8.20 0.00 3.08
592 660 4.222847 GAGCTCCCCGGCGGTAAG 62.223 72.222 26.32 21.35 37.29 2.34
604 672 2.517875 TACCCTACCGCCGAGCTC 60.518 66.667 2.73 2.73 0.00 4.09
605 673 2.832201 GTACCCTACCGCCGAGCT 60.832 66.667 0.00 0.00 0.00 4.09
606 674 3.135056 CTGTACCCTACCGCCGAGC 62.135 68.421 0.00 0.00 0.00 5.03
607 675 0.464373 TACTGTACCCTACCGCCGAG 60.464 60.000 0.00 0.00 0.00 4.63
608 676 0.034574 TTACTGTACCCTACCGCCGA 60.035 55.000 0.00 0.00 0.00 5.54
609 677 0.383231 CTTACTGTACCCTACCGCCG 59.617 60.000 0.00 0.00 0.00 6.46
610 678 0.103755 GCTTACTGTACCCTACCGCC 59.896 60.000 0.00 0.00 0.00 6.13
611 679 1.109609 AGCTTACTGTACCCTACCGC 58.890 55.000 0.00 0.00 0.00 5.68
612 680 2.620585 GGTAGCTTACTGTACCCTACCG 59.379 54.545 19.23 0.00 38.82 4.02
613 681 2.620585 CGGTAGCTTACTGTACCCTACC 59.379 54.545 21.76 21.76 42.80 3.18
614 682 3.282885 ACGGTAGCTTACTGTACCCTAC 58.717 50.000 12.32 12.32 45.96 3.18
615 683 3.652057 ACGGTAGCTTACTGTACCCTA 57.348 47.619 0.00 0.00 45.96 3.53
616 684 2.521547 ACGGTAGCTTACTGTACCCT 57.478 50.000 0.00 0.00 45.96 4.34
622 690 2.492484 AGGTCTTGACGGTAGCTTACTG 59.508 50.000 0.00 0.00 40.88 2.74
623 691 2.492484 CAGGTCTTGACGGTAGCTTACT 59.508 50.000 0.00 0.00 0.00 2.24
624 692 2.230750 ACAGGTCTTGACGGTAGCTTAC 59.769 50.000 0.00 0.00 0.00 2.34
625 693 2.230508 CACAGGTCTTGACGGTAGCTTA 59.769 50.000 0.00 0.00 0.00 3.09
626 694 1.000955 CACAGGTCTTGACGGTAGCTT 59.999 52.381 0.00 0.00 0.00 3.74
627 695 0.603569 CACAGGTCTTGACGGTAGCT 59.396 55.000 0.00 0.00 0.00 3.32
628 696 0.389948 CCACAGGTCTTGACGGTAGC 60.390 60.000 0.00 0.00 0.00 3.58
629 697 0.389948 GCCACAGGTCTTGACGGTAG 60.390 60.000 0.00 0.00 0.00 3.18
630 698 1.669440 GCCACAGGTCTTGACGGTA 59.331 57.895 0.00 0.00 0.00 4.02
631 699 2.426023 GCCACAGGTCTTGACGGT 59.574 61.111 0.00 0.00 0.00 4.83
632 700 2.738521 CGCCACAGGTCTTGACGG 60.739 66.667 0.00 0.00 0.00 4.79
633 701 2.149803 TACCGCCACAGGTCTTGACG 62.150 60.000 0.00 0.00 44.68 4.35
634 702 0.389948 CTACCGCCACAGGTCTTGAC 60.390 60.000 0.00 0.00 44.68 3.18
635 703 1.541310 CCTACCGCCACAGGTCTTGA 61.541 60.000 0.00 0.00 44.68 3.02
636 704 1.079127 CCTACCGCCACAGGTCTTG 60.079 63.158 0.00 0.00 44.68 3.02
637 705 2.291043 CCCTACCGCCACAGGTCTT 61.291 63.158 0.00 0.00 44.68 3.01
638 706 2.159101 TACCCTACCGCCACAGGTCT 62.159 60.000 0.00 0.00 44.68 3.85
639 707 1.673808 CTACCCTACCGCCACAGGTC 61.674 65.000 0.00 0.00 44.68 3.85
641 709 1.684734 ACTACCCTACCGCCACAGG 60.685 63.158 0.00 0.00 37.30 4.00
642 710 1.515954 CACTACCCTACCGCCACAG 59.484 63.158 0.00 0.00 0.00 3.66
643 711 2.652095 GCACTACCCTACCGCCACA 61.652 63.158 0.00 0.00 0.00 4.17
644 712 2.186125 GCACTACCCTACCGCCAC 59.814 66.667 0.00 0.00 0.00 5.01
645 713 3.454573 CGCACTACCCTACCGCCA 61.455 66.667 0.00 0.00 0.00 5.69
646 714 4.886121 GCGCACTACCCTACCGCC 62.886 72.222 0.30 0.00 38.84 6.13
647 715 3.834799 AGCGCACTACCCTACCGC 61.835 66.667 11.47 0.00 44.47 5.68
648 716 2.104331 CAGCGCACTACCCTACCG 59.896 66.667 11.47 0.00 0.00 4.02
649 717 2.499685 CCAGCGCACTACCCTACC 59.500 66.667 11.47 0.00 0.00 3.18
650 718 2.202892 GCCAGCGCACTACCCTAC 60.203 66.667 11.47 0.00 34.03 3.18
651 719 3.467226 GGCCAGCGCACTACCCTA 61.467 66.667 11.47 0.00 36.38 3.53
658 726 2.530958 TTACCTAAGGGCCAGCGCAC 62.531 60.000 11.47 0.00 39.44 5.34
659 727 2.294839 TTACCTAAGGGCCAGCGCA 61.295 57.895 11.47 0.00 36.38 6.09
660 728 1.818363 GTTACCTAAGGGCCAGCGC 60.818 63.158 6.18 0.00 35.63 5.92
661 729 1.520787 CGTTACCTAAGGGCCAGCG 60.521 63.158 6.18 0.00 35.63 5.18
662 730 1.153229 CCGTTACCTAAGGGCCAGC 60.153 63.158 6.18 0.00 34.86 4.85
667 735 1.153509 CACGGCCGTTACCTAAGGG 60.154 63.158 32.11 10.47 42.51 3.95
668 736 1.153509 CCACGGCCGTTACCTAAGG 60.154 63.158 32.11 21.46 0.00 2.69
669 737 1.153509 CCCACGGCCGTTACCTAAG 60.154 63.158 32.11 15.83 0.00 2.18
670 738 2.980475 CCCACGGCCGTTACCTAA 59.020 61.111 32.11 0.00 0.00 2.69
671 739 3.773404 GCCCACGGCCGTTACCTA 61.773 66.667 32.11 0.00 44.06 3.08
687 755 4.187810 GGCGGTGGCATAAACGGC 62.188 66.667 12.62 12.62 44.25 5.68
688 756 2.748251 TGGCGGTGGCATAAACGG 60.748 61.111 0.00 0.00 42.47 4.44
689 757 2.791256 CTGGCGGTGGCATAAACG 59.209 61.111 0.00 0.00 42.47 3.60
690 758 1.666209 ATGCTGGCGGTGGCATAAAC 61.666 55.000 0.00 0.00 45.74 2.01
691 759 1.379710 ATGCTGGCGGTGGCATAAA 60.380 52.632 0.00 0.00 45.74 1.40
692 760 2.275089 ATGCTGGCGGTGGCATAA 59.725 55.556 0.00 0.00 45.74 1.90
697 765 3.466791 CTAGGGATGCTGGCGGTGG 62.467 68.421 0.00 0.00 0.00 4.61
698 766 2.109799 CTAGGGATGCTGGCGGTG 59.890 66.667 0.00 0.00 0.00 4.94
699 767 3.866582 GCTAGGGATGCTGGCGGT 61.867 66.667 0.00 0.00 0.00 5.68
700 768 4.976925 CGCTAGGGATGCTGGCGG 62.977 72.222 0.00 0.00 45.66 6.13
702 770 2.441822 CTACCGCTAGGGATGCTGGC 62.442 65.000 8.65 0.00 43.47 4.85
703 771 1.668294 CTACCGCTAGGGATGCTGG 59.332 63.158 8.65 0.00 43.47 4.85
704 772 1.115930 ACCTACCGCTAGGGATGCTG 61.116 60.000 8.65 0.00 43.87 4.41
705 773 0.398664 AACCTACCGCTAGGGATGCT 60.399 55.000 8.65 0.00 43.87 3.79
706 774 0.249911 CAACCTACCGCTAGGGATGC 60.250 60.000 8.65 0.00 43.87 3.91
707 775 0.393077 CCAACCTACCGCTAGGGATG 59.607 60.000 8.65 6.78 43.87 3.51
708 776 0.263765 TCCAACCTACCGCTAGGGAT 59.736 55.000 8.65 0.00 43.87 3.85
709 777 0.685458 GTCCAACCTACCGCTAGGGA 60.685 60.000 8.65 0.00 43.87 4.20
710 778 0.974010 TGTCCAACCTACCGCTAGGG 60.974 60.000 8.65 0.00 43.87 3.53
711 779 0.175073 GTGTCCAACCTACCGCTAGG 59.825 60.000 2.03 2.03 44.99 3.02
712 780 1.183549 AGTGTCCAACCTACCGCTAG 58.816 55.000 0.00 0.00 0.00 3.42
713 781 2.094675 GTAGTGTCCAACCTACCGCTA 58.905 52.381 0.00 0.00 0.00 4.26
714 782 0.893447 GTAGTGTCCAACCTACCGCT 59.107 55.000 0.00 0.00 0.00 5.52
715 783 0.108472 GGTAGTGTCCAACCTACCGC 60.108 60.000 0.00 0.00 33.50 5.68
717 785 0.533951 CCGGTAGTGTCCAACCTACC 59.466 60.000 5.90 5.90 38.65 3.18
718 786 0.108472 GCCGGTAGTGTCCAACCTAC 60.108 60.000 1.90 0.00 33.34 3.18
719 787 1.597797 CGCCGGTAGTGTCCAACCTA 61.598 60.000 1.90 0.00 33.34 3.08
720 788 2.939261 CGCCGGTAGTGTCCAACCT 61.939 63.158 1.90 0.00 33.34 3.50
721 789 2.433664 CGCCGGTAGTGTCCAACC 60.434 66.667 1.90 0.00 0.00 3.77
722 790 1.445582 CTCGCCGGTAGTGTCCAAC 60.446 63.158 1.90 0.00 0.00 3.77
723 791 2.967397 CTCGCCGGTAGTGTCCAA 59.033 61.111 1.90 0.00 0.00 3.53
724 792 3.755628 GCTCGCCGGTAGTGTCCA 61.756 66.667 1.90 0.00 0.00 4.02
725 793 4.509737 GGCTCGCCGGTAGTGTCC 62.510 72.222 1.90 1.68 0.00 4.02
726 794 3.450115 AGGCTCGCCGGTAGTGTC 61.450 66.667 1.90 0.00 41.95 3.67
727 795 3.760035 CAGGCTCGCCGGTAGTGT 61.760 66.667 1.90 0.00 41.95 3.55
728 796 4.514577 CCAGGCTCGCCGGTAGTG 62.515 72.222 1.90 0.00 41.95 2.74
729 797 3.650298 TACCAGGCTCGCCGGTAGT 62.650 63.158 20.15 11.73 41.05 2.73
730 798 2.420568 TTACCAGGCTCGCCGGTAG 61.421 63.158 21.73 1.89 41.98 3.18
731 799 2.362760 TTACCAGGCTCGCCGGTA 60.363 61.111 20.15 20.15 41.05 4.02
732 800 4.078516 GTTACCAGGCTCGCCGGT 62.079 66.667 21.68 21.68 42.46 5.28
734 802 2.067091 TATCGTTACCAGGCTCGCCG 62.067 60.000 1.69 0.00 41.95 6.46
735 803 0.318784 CTATCGTTACCAGGCTCGCC 60.319 60.000 0.00 0.00 0.00 5.54
736 804 0.940047 GCTATCGTTACCAGGCTCGC 60.940 60.000 0.00 0.00 0.00 5.03
737 805 0.384309 TGCTATCGTTACCAGGCTCG 59.616 55.000 0.00 0.00 0.00 5.03
738 806 2.596904 TTGCTATCGTTACCAGGCTC 57.403 50.000 0.00 0.00 0.00 4.70
739 807 3.055385 TCTTTTGCTATCGTTACCAGGCT 60.055 43.478 0.00 0.00 0.00 4.58
740 808 3.267483 TCTTTTGCTATCGTTACCAGGC 58.733 45.455 0.00 0.00 0.00 4.85
741 809 5.584649 TGATTCTTTTGCTATCGTTACCAGG 59.415 40.000 0.00 0.00 0.00 4.45
742 810 6.535150 TCTGATTCTTTTGCTATCGTTACCAG 59.465 38.462 0.00 0.00 0.00 4.00
743 811 6.403049 TCTGATTCTTTTGCTATCGTTACCA 58.597 36.000 0.00 0.00 0.00 3.25
744 812 6.903883 TCTGATTCTTTTGCTATCGTTACC 57.096 37.500 0.00 0.00 0.00 2.85
745 813 9.774742 AAAATCTGATTCTTTTGCTATCGTTAC 57.225 29.630 2.92 0.00 0.00 2.50
774 842 6.830838 AGATCTGACTTCTGTTTGAGGTTTTT 59.169 34.615 0.00 0.00 35.00 1.94
775 843 6.360618 AGATCTGACTTCTGTTTGAGGTTTT 58.639 36.000 0.00 0.00 35.00 2.43
776 844 5.934781 AGATCTGACTTCTGTTTGAGGTTT 58.065 37.500 0.00 0.00 35.00 3.27
777 845 5.559148 AGATCTGACTTCTGTTTGAGGTT 57.441 39.130 0.00 0.00 35.00 3.50
778 846 5.163258 ACAAGATCTGACTTCTGTTTGAGGT 60.163 40.000 0.00 0.00 37.73 3.85
779 847 5.303971 ACAAGATCTGACTTCTGTTTGAGG 58.696 41.667 0.00 0.00 0.00 3.86
780 848 6.857777 AACAAGATCTGACTTCTGTTTGAG 57.142 37.500 0.00 0.00 0.00 3.02
781 849 8.731275 TTTAACAAGATCTGACTTCTGTTTGA 57.269 30.769 12.20 1.97 0.00 2.69
782 850 8.616076 ACTTTAACAAGATCTGACTTCTGTTTG 58.384 33.333 12.20 7.23 33.72 2.93
783 851 8.738645 ACTTTAACAAGATCTGACTTCTGTTT 57.261 30.769 12.20 0.33 33.72 2.83
784 852 8.738645 AACTTTAACAAGATCTGACTTCTGTT 57.261 30.769 11.77 11.77 33.72 3.16
785 853 7.987458 TGAACTTTAACAAGATCTGACTTCTGT 59.013 33.333 0.00 0.00 33.83 3.41
786 854 8.370493 TGAACTTTAACAAGATCTGACTTCTG 57.630 34.615 0.00 0.00 33.83 3.02
787 855 8.831550 GTTGAACTTTAACAAGATCTGACTTCT 58.168 33.333 0.00 0.00 33.83 2.85
788 856 7.794349 CGTTGAACTTTAACAAGATCTGACTTC 59.206 37.037 0.00 0.00 33.83 3.01
789 857 7.494625 TCGTTGAACTTTAACAAGATCTGACTT 59.505 33.333 0.00 0.00 33.83 3.01
790 858 6.984474 TCGTTGAACTTTAACAAGATCTGACT 59.016 34.615 0.00 0.00 33.83 3.41
791 859 7.173863 TCGTTGAACTTTAACAAGATCTGAC 57.826 36.000 0.00 0.00 33.83 3.51
792 860 7.780008 TTCGTTGAACTTTAACAAGATCTGA 57.220 32.000 0.00 0.00 33.83 3.27
793 861 7.587757 CCTTTCGTTGAACTTTAACAAGATCTG 59.412 37.037 0.00 0.00 33.83 2.90
794 862 7.255139 CCCTTTCGTTGAACTTTAACAAGATCT 60.255 37.037 0.00 0.00 33.83 2.75
795 863 6.856426 CCCTTTCGTTGAACTTTAACAAGATC 59.144 38.462 0.00 0.00 33.40 2.75
796 864 6.320418 ACCCTTTCGTTGAACTTTAACAAGAT 59.680 34.615 0.00 0.00 33.72 2.40
797 865 5.648960 ACCCTTTCGTTGAACTTTAACAAGA 59.351 36.000 0.00 0.00 33.72 3.02
798 866 5.886992 ACCCTTTCGTTGAACTTTAACAAG 58.113 37.500 0.00 0.00 35.92 3.16
799 867 5.415077 TGACCCTTTCGTTGAACTTTAACAA 59.585 36.000 0.00 0.00 0.00 2.83
800 868 4.942483 TGACCCTTTCGTTGAACTTTAACA 59.058 37.500 0.00 0.00 0.00 2.41
801 869 5.488645 TGACCCTTTCGTTGAACTTTAAC 57.511 39.130 0.00 0.00 0.00 2.01
802 870 6.512342 TTTGACCCTTTCGTTGAACTTTAA 57.488 33.333 0.00 0.00 0.00 1.52
803 871 6.072064 TGTTTTGACCCTTTCGTTGAACTTTA 60.072 34.615 0.00 0.00 0.00 1.85
804 872 5.165676 GTTTTGACCCTTTCGTTGAACTTT 58.834 37.500 0.00 0.00 0.00 2.66
805 873 4.218852 TGTTTTGACCCTTTCGTTGAACTT 59.781 37.500 0.00 0.00 0.00 2.66
806 874 3.759618 TGTTTTGACCCTTTCGTTGAACT 59.240 39.130 0.00 0.00 0.00 3.01
807 875 3.855379 GTGTTTTGACCCTTTCGTTGAAC 59.145 43.478 0.00 0.00 0.00 3.18
808 876 3.426426 CGTGTTTTGACCCTTTCGTTGAA 60.426 43.478 0.00 0.00 0.00 2.69
809 877 2.096174 CGTGTTTTGACCCTTTCGTTGA 59.904 45.455 0.00 0.00 0.00 3.18
810 878 2.446282 CGTGTTTTGACCCTTTCGTTG 58.554 47.619 0.00 0.00 0.00 4.10
811 879 1.402613 CCGTGTTTTGACCCTTTCGTT 59.597 47.619 0.00 0.00 0.00 3.85
812 880 1.018910 CCGTGTTTTGACCCTTTCGT 58.981 50.000 0.00 0.00 0.00 3.85
813 881 1.301423 TCCGTGTTTTGACCCTTTCG 58.699 50.000 0.00 0.00 0.00 3.46
814 882 4.316205 AATTCCGTGTTTTGACCCTTTC 57.684 40.909 0.00 0.00 0.00 2.62
815 883 4.746535 AAATTCCGTGTTTTGACCCTTT 57.253 36.364 0.00 0.00 0.00 3.11
816 884 4.438148 CAAAATTCCGTGTTTTGACCCTT 58.562 39.130 10.01 0.00 45.02 3.95
817 885 3.739830 GCAAAATTCCGTGTTTTGACCCT 60.740 43.478 16.45 0.00 45.02 4.34
818 886 2.542178 GCAAAATTCCGTGTTTTGACCC 59.458 45.455 16.45 1.69 45.02 4.46
819 887 2.542178 GGCAAAATTCCGTGTTTTGACC 59.458 45.455 16.45 13.49 44.81 4.02
820 888 3.852471 GGCAAAATTCCGTGTTTTGAC 57.148 42.857 16.45 12.04 45.02 3.18
821 889 3.810310 AGGCAAAATTCCGTGTTTTGA 57.190 38.095 16.45 0.00 45.02 2.69
822 890 4.549871 CGAAAGGCAAAATTCCGTGTTTTG 60.550 41.667 10.83 10.83 45.01 2.44
823 891 3.553917 CGAAAGGCAAAATTCCGTGTTTT 59.446 39.130 0.00 0.00 0.00 2.43
824 892 3.120041 CGAAAGGCAAAATTCCGTGTTT 58.880 40.909 0.00 0.00 0.00 2.83
825 893 2.100087 ACGAAAGGCAAAATTCCGTGTT 59.900 40.909 0.00 0.00 0.00 3.32
826 894 1.679153 ACGAAAGGCAAAATTCCGTGT 59.321 42.857 0.00 0.00 0.00 4.49
827 895 2.315901 GACGAAAGGCAAAATTCCGTG 58.684 47.619 0.00 0.00 40.66 4.94
828 896 1.069500 CGACGAAAGGCAAAATTCCGT 60.069 47.619 0.00 0.00 41.50 4.69
829 897 1.195900 TCGACGAAAGGCAAAATTCCG 59.804 47.619 0.00 0.00 41.50 4.30
830 898 2.977829 GTTCGACGAAAGGCAAAATTCC 59.022 45.455 12.67 0.00 41.50 3.01
831 899 3.623863 TGTTCGACGAAAGGCAAAATTC 58.376 40.909 12.67 0.00 41.50 2.17
832 900 3.701532 TGTTCGACGAAAGGCAAAATT 57.298 38.095 12.67 0.00 41.50 1.82
833 901 3.701532 TTGTTCGACGAAAGGCAAAAT 57.298 38.095 12.67 0.00 41.50 1.82
834 902 3.430931 CTTTGTTCGACGAAAGGCAAAA 58.569 40.909 19.19 11.89 41.50 2.44
835 903 2.793237 GCTTTGTTCGACGAAAGGCAAA 60.793 45.455 12.67 16.24 41.50 3.68
836 904 1.268335 GCTTTGTTCGACGAAAGGCAA 60.268 47.619 12.67 9.75 41.50 4.52
837 905 0.306533 GCTTTGTTCGACGAAAGGCA 59.693 50.000 12.67 3.45 41.50 4.75
838 906 0.721483 CGCTTTGTTCGACGAAAGGC 60.721 55.000 12.67 8.97 31.07 4.35
839 907 0.856641 TCGCTTTGTTCGACGAAAGG 59.143 50.000 12.67 0.00 31.07 3.11
840 908 1.920553 GTCGCTTTGTTCGACGAAAG 58.079 50.000 12.67 7.62 45.19 2.62
914 982 5.697178 GCTATTCGAGGAAGAAACTTATCCC 59.303 44.000 0.00 0.00 33.55 3.85
1155 1223 3.090532 ACCTGGGATTCGGGCTCC 61.091 66.667 0.00 0.00 46.01 4.70
1163 1231 2.933287 TCCACGGCACCTGGGATT 60.933 61.111 0.00 0.00 0.00 3.01
1164 1232 3.402681 CTCCACGGCACCTGGGAT 61.403 66.667 0.00 0.00 0.00 3.85
1248 1316 0.316278 CGTCTGCGTATCTGTCCGAG 60.316 60.000 0.00 0.00 0.00 4.63
1305 1373 4.453819 GGATGATAGGCAAGGATCTTTTCG 59.546 45.833 0.00 0.00 0.00 3.46
1377 1445 3.052082 CTGAACTGCGGGTGCCTG 61.052 66.667 0.00 0.00 41.78 4.85
1636 1707 9.256477 CCTACCCTTCTTATTTTGTTTTGAAAC 57.744 33.333 0.00 0.00 39.33 2.78
1637 1708 7.929245 GCCTACCCTTCTTATTTTGTTTTGAAA 59.071 33.333 0.00 0.00 0.00 2.69
1638 1709 7.070074 TGCCTACCCTTCTTATTTTGTTTTGAA 59.930 33.333 0.00 0.00 0.00 2.69
1639 1710 6.551601 TGCCTACCCTTCTTATTTTGTTTTGA 59.448 34.615 0.00 0.00 0.00 2.69
1650 1721 5.903010 TCACTAATGATGCCTACCCTTCTTA 59.097 40.000 0.00 0.00 0.00 2.10
1702 1790 4.527038 CCCTAAGACAAACAGAGGACTACA 59.473 45.833 0.00 0.00 0.00 2.74
1703 1791 4.527427 ACCCTAAGACAAACAGAGGACTAC 59.473 45.833 0.00 0.00 0.00 2.73
1705 1793 3.588569 ACCCTAAGACAAACAGAGGACT 58.411 45.455 0.00 0.00 0.00 3.85
1706 1794 4.353383 AACCCTAAGACAAACAGAGGAC 57.647 45.455 0.00 0.00 0.00 3.85
1707 1795 5.382664 AAAACCCTAAGACAAACAGAGGA 57.617 39.130 0.00 0.00 0.00 3.71
1708 1796 6.349363 GCATAAAACCCTAAGACAAACAGAGG 60.349 42.308 0.00 0.00 0.00 3.69
1709 1797 6.206634 TGCATAAAACCCTAAGACAAACAGAG 59.793 38.462 0.00 0.00 0.00 3.35
1710 1798 6.065374 TGCATAAAACCCTAAGACAAACAGA 58.935 36.000 0.00 0.00 0.00 3.41
1711 1799 6.325919 TGCATAAAACCCTAAGACAAACAG 57.674 37.500 0.00 0.00 0.00 3.16
1712 1800 5.242838 CCTGCATAAAACCCTAAGACAAACA 59.757 40.000 0.00 0.00 0.00 2.83
1713 1801 5.243060 ACCTGCATAAAACCCTAAGACAAAC 59.757 40.000 0.00 0.00 0.00 2.93
1714 1802 5.242838 CACCTGCATAAAACCCTAAGACAAA 59.757 40.000 0.00 0.00 0.00 2.83
1715 1803 4.764823 CACCTGCATAAAACCCTAAGACAA 59.235 41.667 0.00 0.00 0.00 3.18
1716 1804 4.202524 ACACCTGCATAAAACCCTAAGACA 60.203 41.667 0.00 0.00 0.00 3.41
1717 1805 4.332828 ACACCTGCATAAAACCCTAAGAC 58.667 43.478 0.00 0.00 0.00 3.01
1718 1806 4.650972 ACACCTGCATAAAACCCTAAGA 57.349 40.909 0.00 0.00 0.00 2.10
1719 1807 5.722021 AAACACCTGCATAAAACCCTAAG 57.278 39.130 0.00 0.00 0.00 2.18
1720 1808 6.948886 TCATAAACACCTGCATAAAACCCTAA 59.051 34.615 0.00 0.00 0.00 2.69
1721 1809 6.376018 GTCATAAACACCTGCATAAAACCCTA 59.624 38.462 0.00 0.00 0.00 3.53
1722 1810 5.185056 GTCATAAACACCTGCATAAAACCCT 59.815 40.000 0.00 0.00 0.00 4.34
1723 1811 5.185056 AGTCATAAACACCTGCATAAAACCC 59.815 40.000 0.00 0.00 0.00 4.11
1726 1814 5.336372 GCCAGTCATAAACACCTGCATAAAA 60.336 40.000 0.00 0.00 0.00 1.52
1768 1856 1.004918 AAGCACTACTGGGCACGAC 60.005 57.895 0.00 0.00 0.00 4.34
1769 1857 1.292223 GAAGCACTACTGGGCACGA 59.708 57.895 0.00 0.00 0.00 4.35
1770 1858 1.005037 TGAAGCACTACTGGGCACG 60.005 57.895 0.00 0.00 0.00 5.34
1771 1859 0.035458 ACTGAAGCACTACTGGGCAC 59.965 55.000 0.00 0.00 0.00 5.01
1772 1860 0.321671 GACTGAAGCACTACTGGGCA 59.678 55.000 0.00 0.00 0.00 5.36
1773 1861 0.737715 CGACTGAAGCACTACTGGGC 60.738 60.000 0.00 0.00 0.00 5.36
1774 1862 0.108615 CCGACTGAAGCACTACTGGG 60.109 60.000 0.00 0.00 0.00 4.45
1775 1863 0.108615 CCCGACTGAAGCACTACTGG 60.109 60.000 0.00 0.00 0.00 4.00
1776 1864 0.603569 ACCCGACTGAAGCACTACTG 59.396 55.000 0.00 0.00 0.00 2.74
1777 1865 1.272769 GAACCCGACTGAAGCACTACT 59.727 52.381 0.00 0.00 0.00 2.57
1778 1866 1.000506 TGAACCCGACTGAAGCACTAC 59.999 52.381 0.00 0.00 0.00 2.73
1779 1867 1.000506 GTGAACCCGACTGAAGCACTA 59.999 52.381 0.00 0.00 0.00 2.74
1780 1868 0.249911 GTGAACCCGACTGAAGCACT 60.250 55.000 0.00 0.00 0.00 4.40
1781 1869 0.249911 AGTGAACCCGACTGAAGCAC 60.250 55.000 0.00 0.00 0.00 4.40
1782 1870 0.468226 AAGTGAACCCGACTGAAGCA 59.532 50.000 0.00 0.00 0.00 3.91
1783 1871 1.264288 CAAAGTGAACCCGACTGAAGC 59.736 52.381 0.00 0.00 0.00 3.86
1784 1872 1.873591 CCAAAGTGAACCCGACTGAAG 59.126 52.381 0.00 0.00 0.00 3.02
1785 1873 1.476110 CCCAAAGTGAACCCGACTGAA 60.476 52.381 0.00 0.00 0.00 3.02
1786 1874 0.107831 CCCAAAGTGAACCCGACTGA 59.892 55.000 0.00 0.00 0.00 3.41
1787 1875 1.515521 GCCCAAAGTGAACCCGACTG 61.516 60.000 0.00 0.00 0.00 3.51
1788 1876 1.228154 GCCCAAAGTGAACCCGACT 60.228 57.895 0.00 0.00 0.00 4.18
1833 1921 2.799126 TCCCATACGCCAGTCAAAAT 57.201 45.000 0.00 0.00 0.00 1.82
1837 1925 1.423584 ATCATCCCATACGCCAGTCA 58.576 50.000 0.00 0.00 0.00 3.41
1866 1957 2.038387 TCAGCGCCCTCCTTATTTTC 57.962 50.000 2.29 0.00 0.00 2.29
1873 1964 0.983378 AATACCTTCAGCGCCCTCCT 60.983 55.000 2.29 0.00 0.00 3.69
1887 1978 2.808543 CTGGCAAGGATCGCTTAATACC 59.191 50.000 0.00 0.00 0.00 2.73
1888 1979 2.224314 GCTGGCAAGGATCGCTTAATAC 59.776 50.000 0.00 0.00 0.00 1.89
1889 1980 2.104792 AGCTGGCAAGGATCGCTTAATA 59.895 45.455 0.00 0.00 0.00 0.98
1890 1981 1.133976 AGCTGGCAAGGATCGCTTAAT 60.134 47.619 0.00 0.00 0.00 1.40
1891 1982 0.253044 AGCTGGCAAGGATCGCTTAA 59.747 50.000 0.00 0.00 0.00 1.85
1892 1983 0.253044 AAGCTGGCAAGGATCGCTTA 59.747 50.000 7.53 0.00 38.98 3.09
1893 1984 0.253044 TAAGCTGGCAAGGATCGCTT 59.747 50.000 13.00 13.00 42.82 4.68
1894 1985 0.462759 GTAAGCTGGCAAGGATCGCT 60.463 55.000 0.00 0.00 0.00 4.93
1895 1986 0.462759 AGTAAGCTGGCAAGGATCGC 60.463 55.000 0.00 0.00 0.00 4.58
1896 1987 1.293924 CAGTAAGCTGGCAAGGATCG 58.706 55.000 0.00 0.00 39.01 3.69
1897 1988 2.012673 CACAGTAAGCTGGCAAGGATC 58.987 52.381 0.00 0.00 46.62 3.36
1898 1989 1.630369 TCACAGTAAGCTGGCAAGGAT 59.370 47.619 0.00 0.00 46.62 3.24
1899 1990 1.055849 TCACAGTAAGCTGGCAAGGA 58.944 50.000 0.00 0.00 46.62 3.36
1900 1991 1.741706 CATCACAGTAAGCTGGCAAGG 59.258 52.381 0.00 0.00 46.62 3.61
1901 1992 1.131883 GCATCACAGTAAGCTGGCAAG 59.868 52.381 0.00 0.00 46.62 4.01
1902 1993 1.167851 GCATCACAGTAAGCTGGCAA 58.832 50.000 0.00 0.00 46.62 4.52
1903 1994 0.677731 GGCATCACAGTAAGCTGGCA 60.678 55.000 0.00 0.00 46.62 4.92
1904 1995 0.393537 AGGCATCACAGTAAGCTGGC 60.394 55.000 0.00 0.00 46.62 4.85
1905 1996 1.209019 AGAGGCATCACAGTAAGCTGG 59.791 52.381 0.00 0.00 46.62 4.85
1907 1998 1.209019 CCAGAGGCATCACAGTAAGCT 59.791 52.381 0.00 0.00 0.00 3.74
1908 1999 1.065854 ACCAGAGGCATCACAGTAAGC 60.066 52.381 0.00 0.00 0.00 3.09
1909 2000 3.265791 GAACCAGAGGCATCACAGTAAG 58.734 50.000 0.00 0.00 0.00 2.34
1910 2001 2.637382 TGAACCAGAGGCATCACAGTAA 59.363 45.455 0.00 0.00 0.00 2.24
1938 2029 5.865552 GTGGATGGATGATTTGTTGAAACTG 59.134 40.000 0.00 0.00 0.00 3.16
1950 2041 6.078456 TCCTTTGTAAAGTGGATGGATGAT 57.922 37.500 3.90 0.00 34.20 2.45
1980 2071 3.884693 TGATTTCATCCATAAGCACGCAT 59.115 39.130 0.00 0.00 0.00 4.73
1986 2077 8.411683 AGAACAGATTTGATTTCATCCATAAGC 58.588 33.333 0.00 0.00 0.00 3.09
2024 2115 4.455877 GTCCGAATGTTTTGAAGGATGTCT 59.544 41.667 0.00 0.00 0.00 3.41
2046 2137 4.814294 GAAGGATCCACGCGCCGT 62.814 66.667 15.82 0.00 42.36 5.68
2069 2160 6.742559 AAGATCGGAAGGCCTAAGTATTTA 57.257 37.500 5.16 0.00 0.00 1.40
2083 2174 0.953471 CCGCCACACAAAGATCGGAA 60.953 55.000 0.00 0.00 39.23 4.30
2092 2183 0.102120 CTTTTTGAGCCGCCACACAA 59.898 50.000 0.00 0.00 0.00 3.33
2093 2184 1.732917 CTTTTTGAGCCGCCACACA 59.267 52.632 0.00 0.00 0.00 3.72
2101 2192 2.693074 TGGAAGTCAACCTTTTTGAGCC 59.307 45.455 0.00 0.00 32.03 4.70
2130 2221 0.039035 TTTGCCACCGCCTTATCCTT 59.961 50.000 0.00 0.00 0.00 3.36
2143 2234 0.758685 CCAAGGGACCAACTTTGCCA 60.759 55.000 0.00 0.00 0.00 4.92
2181 2272 4.028490 GGTGGTGCGTCCCATGGA 62.028 66.667 15.22 0.00 36.74 3.41
2197 2288 1.247567 AAGCACCGAATTGACCAAGG 58.752 50.000 0.00 0.00 0.00 3.61
2207 2298 0.250727 CTTGGGAGGAAAGCACCGAA 60.251 55.000 0.00 0.00 34.73 4.30
2234 2325 2.991190 GACGACAAGCGGAGTGATAAAA 59.009 45.455 0.00 0.00 46.49 1.52
2249 2340 3.948719 GGTGCTTGGGGGACGACA 61.949 66.667 0.00 0.00 37.13 4.35
2258 2349 4.701956 AAGATTATTTGACGGTGCTTGG 57.298 40.909 0.00 0.00 0.00 3.61
2260 2351 6.811253 TGTTAAGATTATTTGACGGTGCTT 57.189 33.333 0.00 0.00 0.00 3.91
2292 2383 3.006752 GTCCCCTCAAAAATGAATGCACA 59.993 43.478 0.00 0.00 0.00 4.57
2294 2385 3.237746 TGTCCCCTCAAAAATGAATGCA 58.762 40.909 0.00 0.00 0.00 3.96
2301 2392 4.145052 GTCTTGTCTGTCCCCTCAAAAAT 58.855 43.478 0.00 0.00 0.00 1.82
2315 2406 1.384191 GGGCCCATTGGTCTTGTCT 59.616 57.895 19.95 0.00 36.12 3.41
2316 2407 0.541764 TTGGGCCCATTGGTCTTGTC 60.542 55.000 29.23 0.00 36.12 3.18
2326 2417 1.360852 TGACCTTACATTTGGGCCCAT 59.639 47.619 29.23 14.03 0.00 4.00
2339 2430 2.262637 ACGGAGTCCCAATTGACCTTA 58.737 47.619 7.12 0.00 29.74 2.69
2414 2505 3.997021 CCAATGTAATCTTAGCGCCCTAG 59.003 47.826 2.29 0.00 0.00 3.02
2416 2507 2.438021 TCCAATGTAATCTTAGCGCCCT 59.562 45.455 2.29 0.00 0.00 5.19
2428 2519 8.634335 TCTCACTCAAATCAAATCCAATGTAA 57.366 30.769 0.00 0.00 0.00 2.41
2432 2523 6.487828 TCCTCTCACTCAAATCAAATCCAAT 58.512 36.000 0.00 0.00 0.00 3.16
2437 2528 4.263639 TGGCTCCTCTCACTCAAATCAAAT 60.264 41.667 0.00 0.00 0.00 2.32
2438 2529 3.072915 TGGCTCCTCTCACTCAAATCAAA 59.927 43.478 0.00 0.00 0.00 2.69
2439 2530 2.639347 TGGCTCCTCTCACTCAAATCAA 59.361 45.455 0.00 0.00 0.00 2.57
2440 2531 2.259917 TGGCTCCTCTCACTCAAATCA 58.740 47.619 0.00 0.00 0.00 2.57
2441 2532 3.006247 GTTGGCTCCTCTCACTCAAATC 58.994 50.000 0.00 0.00 0.00 2.17
2442 2533 2.373169 TGTTGGCTCCTCTCACTCAAAT 59.627 45.455 0.00 0.00 0.00 2.32
2443 2534 1.768275 TGTTGGCTCCTCTCACTCAAA 59.232 47.619 0.00 0.00 0.00 2.69
2444 2535 1.423584 TGTTGGCTCCTCTCACTCAA 58.576 50.000 0.00 0.00 0.00 3.02
2445 2536 1.423584 TTGTTGGCTCCTCTCACTCA 58.576 50.000 0.00 0.00 0.00 3.41
2446 2537 2.037772 TCTTTGTTGGCTCCTCTCACTC 59.962 50.000 0.00 0.00 0.00 3.51
2447 2538 2.050144 TCTTTGTTGGCTCCTCTCACT 58.950 47.619 0.00 0.00 0.00 3.41
2448 2539 2.550830 TCTTTGTTGGCTCCTCTCAC 57.449 50.000 0.00 0.00 0.00 3.51
2449 2540 2.639347 TGATCTTTGTTGGCTCCTCTCA 59.361 45.455 0.00 0.00 0.00 3.27
2450 2541 3.340814 TGATCTTTGTTGGCTCCTCTC 57.659 47.619 0.00 0.00 0.00 3.20
2451 2542 3.618351 CATGATCTTTGTTGGCTCCTCT 58.382 45.455 0.00 0.00 0.00 3.69
2452 2543 2.686915 CCATGATCTTTGTTGGCTCCTC 59.313 50.000 0.00 0.00 0.00 3.71
2453 2544 2.622452 CCCATGATCTTTGTTGGCTCCT 60.622 50.000 0.00 0.00 0.00 3.69
2454 2545 1.753073 CCCATGATCTTTGTTGGCTCC 59.247 52.381 0.00 0.00 0.00 4.70
2455 2546 2.450476 ACCCATGATCTTTGTTGGCTC 58.550 47.619 0.00 0.00 0.00 4.70
2456 2547 2.564062 CAACCCATGATCTTTGTTGGCT 59.436 45.455 0.00 0.00 34.21 4.75
2457 2548 2.354003 CCAACCCATGATCTTTGTTGGC 60.354 50.000 19.01 0.00 46.49 4.52
2458 2549 3.598019 CCAACCCATGATCTTTGTTGG 57.402 47.619 18.13 18.13 46.89 3.77
2459 2550 2.299582 TGCCAACCCATGATCTTTGTTG 59.700 45.455 0.00 11.19 36.83 3.33
2460 2551 2.607499 TGCCAACCCATGATCTTTGTT 58.393 42.857 0.00 0.00 0.00 2.83
2461 2552 2.307496 TGCCAACCCATGATCTTTGT 57.693 45.000 0.00 0.00 0.00 2.83
2462 2553 2.159014 CCATGCCAACCCATGATCTTTG 60.159 50.000 0.00 0.00 44.12 2.77
2463 2554 2.112998 CCATGCCAACCCATGATCTTT 58.887 47.619 0.00 0.00 44.12 2.52
2464 2555 1.690209 CCCATGCCAACCCATGATCTT 60.690 52.381 0.00 0.00 44.12 2.40
2465 2556 0.105862 CCCATGCCAACCCATGATCT 60.106 55.000 0.00 0.00 44.12 2.75
2466 2557 1.751349 GCCCATGCCAACCCATGATC 61.751 60.000 0.00 0.00 44.12 2.92
2467 2558 1.763256 GCCCATGCCAACCCATGAT 60.763 57.895 0.00 0.00 44.12 2.45
2468 2559 2.364056 GCCCATGCCAACCCATGA 60.364 61.111 0.00 0.00 44.12 3.07
2469 2560 2.291801 TTGCCCATGCCAACCCATG 61.292 57.895 0.00 0.00 41.71 3.66
2470 2561 2.122280 TTGCCCATGCCAACCCAT 59.878 55.556 0.00 0.00 36.33 4.00
2471 2562 2.921972 GTTGCCCATGCCAACCCA 60.922 61.111 13.48 0.00 36.33 4.51
2472 2563 3.705289 GGTTGCCCATGCCAACCC 61.705 66.667 24.85 13.58 40.12 4.11
2473 2564 2.921972 TGGTTGCCCATGCCAACC 60.922 61.111 26.90 26.90 43.26 3.77
2482 2573 0.960364 ACGTCATCACATGGTTGCCC 60.960 55.000 0.00 0.00 0.00 5.36
2483 2574 0.168788 CACGTCATCACATGGTTGCC 59.831 55.000 0.00 0.00 0.00 4.52
2484 2575 0.168788 CCACGTCATCACATGGTTGC 59.831 55.000 0.00 0.00 0.00 4.17
2485 2576 0.804364 CCCACGTCATCACATGGTTG 59.196 55.000 0.00 0.00 0.00 3.77
2486 2577 0.960364 GCCCACGTCATCACATGGTT 60.960 55.000 0.00 0.00 0.00 3.67
2487 2578 1.377202 GCCCACGTCATCACATGGT 60.377 57.895 0.00 0.00 0.00 3.55
2488 2579 0.177836 TAGCCCACGTCATCACATGG 59.822 55.000 0.00 0.00 0.00 3.66
2489 2580 1.290203 GTAGCCCACGTCATCACATG 58.710 55.000 0.00 0.00 0.00 3.21
2490 2581 0.179111 CGTAGCCCACGTCATCACAT 60.179 55.000 0.47 0.00 45.82 3.21
2491 2582 1.214325 CGTAGCCCACGTCATCACA 59.786 57.895 0.47 0.00 45.82 3.58
2492 2583 4.088421 CGTAGCCCACGTCATCAC 57.912 61.111 0.47 0.00 45.82 3.06
2500 2591 4.034048 CACTCAAATAATGTCGTAGCCCAC 59.966 45.833 0.00 0.00 0.00 4.61
2501 2592 4.081365 TCACTCAAATAATGTCGTAGCCCA 60.081 41.667 0.00 0.00 0.00 5.36
2502 2593 4.439057 TCACTCAAATAATGTCGTAGCCC 58.561 43.478 0.00 0.00 0.00 5.19
2503 2594 6.417191 TTTCACTCAAATAATGTCGTAGCC 57.583 37.500 0.00 0.00 0.00 3.93
2504 2595 6.312918 TCCTTTCACTCAAATAATGTCGTAGC 59.687 38.462 0.00 0.00 0.00 3.58
2505 2596 7.464710 GCTCCTTTCACTCAAATAATGTCGTAG 60.465 40.741 0.00 0.00 0.00 3.51
2506 2597 6.312918 GCTCCTTTCACTCAAATAATGTCGTA 59.687 38.462 0.00 0.00 0.00 3.43
2507 2598 5.122396 GCTCCTTTCACTCAAATAATGTCGT 59.878 40.000 0.00 0.00 0.00 4.34
2508 2599 5.447818 GGCTCCTTTCACTCAAATAATGTCG 60.448 44.000 0.00 0.00 0.00 4.35
2509 2600 5.415701 TGGCTCCTTTCACTCAAATAATGTC 59.584 40.000 0.00 0.00 0.00 3.06
2510 2601 5.324409 TGGCTCCTTTCACTCAAATAATGT 58.676 37.500 0.00 0.00 0.00 2.71
2511 2602 5.902613 TGGCTCCTTTCACTCAAATAATG 57.097 39.130 0.00 0.00 0.00 1.90
2512 2603 5.774690 TGTTGGCTCCTTTCACTCAAATAAT 59.225 36.000 0.00 0.00 0.00 1.28
2513 2604 5.136828 TGTTGGCTCCTTTCACTCAAATAA 58.863 37.500 0.00 0.00 0.00 1.40
2514 2605 4.724399 TGTTGGCTCCTTTCACTCAAATA 58.276 39.130 0.00 0.00 0.00 1.40
2515 2606 3.565307 TGTTGGCTCCTTTCACTCAAAT 58.435 40.909 0.00 0.00 0.00 2.32
2516 2607 3.011566 TGTTGGCTCCTTTCACTCAAA 57.988 42.857 0.00 0.00 0.00 2.69
2517 2608 2.727123 TGTTGGCTCCTTTCACTCAA 57.273 45.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.