Multiple sequence alignment - TraesCS2D01G331300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G331300 chr2D 100.000 4120 0 0 1 4120 423871448 423875567 0.000000e+00 7609.0
1 TraesCS2D01G331300 chr2A 89.853 3341 168 67 667 3898 564503889 564500611 0.000000e+00 4133.0
2 TraesCS2D01G331300 chr2A 85.973 221 17 3 3904 4114 564500496 564500280 1.490000e-54 224.0
3 TraesCS2D01G331300 chr2A 83.857 223 18 10 417 626 564504093 564503876 3.250000e-46 196.0
4 TraesCS2D01G331300 chr2B 89.604 1741 89 38 678 2343 497852436 497854159 0.000000e+00 2128.0
5 TraesCS2D01G331300 chr2B 90.972 1296 73 18 2340 3612 497854271 497855545 0.000000e+00 1705.0
6 TraesCS2D01G331300 chr2B 83.721 258 33 6 276 526 497850264 497850519 6.890000e-58 235.0
7 TraesCS2D01G331300 chr2B 93.204 103 6 1 525 626 497852336 497852438 2.570000e-32 150.0
8 TraesCS2D01G331300 chr7B 83.549 772 66 17 953 1686 732775081 732774333 0.000000e+00 665.0
9 TraesCS2D01G331300 chr7B 78.624 407 66 13 1685 2086 583990288 583990678 2.460000e-62 250.0
10 TraesCS2D01G331300 chr7A 78.304 507 86 15 1685 2184 622335279 622335768 5.170000e-79 305.0
11 TraesCS2D01G331300 chr7A 82.911 158 18 5 1189 1337 622334350 622334507 2.580000e-27 134.0
12 TraesCS2D01G331300 chr7A 93.333 45 3 0 4034 4078 34962010 34961966 2.660000e-07 67.6
13 TraesCS2D01G331300 chr6D 94.558 147 8 0 1190 1336 256722652 256722798 1.150000e-55 228.0
14 TraesCS2D01G331300 chr6D 98.077 52 1 0 1001 1052 256722450 256722501 1.580000e-14 91.6
15 TraesCS2D01G331300 chr6D 81.443 97 11 5 4009 4105 331573487 331573576 5.710000e-09 73.1
16 TraesCS2D01G331300 chr6B 94.558 147 8 0 1190 1336 372571950 372572096 1.150000e-55 228.0
17 TraesCS2D01G331300 chr6B 98.077 52 1 0 1001 1052 372571754 372571805 1.580000e-14 91.6
18 TraesCS2D01G331300 chr6A 94.558 147 8 0 1190 1336 366037021 366036875 1.150000e-55 228.0
19 TraesCS2D01G331300 chr6A 98.077 52 1 0 1001 1052 366037218 366037167 1.580000e-14 91.6
20 TraesCS2D01G331300 chr3B 75.087 574 97 24 1681 2240 783414076 783414617 4.140000e-55 226.0
21 TraesCS2D01G331300 chr3B 78.210 257 47 5 1987 2235 785303988 785303733 5.510000e-34 156.0
22 TraesCS2D01G331300 chr7D 91.429 70 4 2 984 1053 540631488 540631555 1.220000e-15 95.3
23 TraesCS2D01G331300 chr5D 87.805 82 5 3 4006 4087 539461227 539461303 1.580000e-14 91.6
24 TraesCS2D01G331300 chr4A 86.250 80 11 0 4030 4109 467684283 467684204 2.040000e-13 87.9
25 TraesCS2D01G331300 chr4A 88.679 53 4 2 4027 4078 743319292 743319343 3.440000e-06 63.9
26 TraesCS2D01G331300 chr4D 87.143 70 9 0 4040 4109 108628608 108628677 3.410000e-11 80.5
27 TraesCS2D01G331300 chr4D 87.143 70 9 0 4040 4109 280179775 280179706 3.410000e-11 80.5
28 TraesCS2D01G331300 chr5B 93.878 49 3 0 4039 4087 607489163 607489211 1.590000e-09 75.0
29 TraesCS2D01G331300 chr5A 100.000 28 0 0 207 234 662394127 662394100 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G331300 chr2D 423871448 423875567 4119 False 7609.000000 7609 100.00000 1 4120 1 chr2D.!!$F1 4119
1 TraesCS2D01G331300 chr2A 564500280 564504093 3813 True 1517.666667 4133 86.56100 417 4114 3 chr2A.!!$R1 3697
2 TraesCS2D01G331300 chr2B 497850264 497855545 5281 False 1054.500000 2128 89.37525 276 3612 4 chr2B.!!$F1 3336
3 TraesCS2D01G331300 chr7B 732774333 732775081 748 True 665.000000 665 83.54900 953 1686 1 chr7B.!!$R1 733
4 TraesCS2D01G331300 chr7A 622334350 622335768 1418 False 219.500000 305 80.60750 1189 2184 2 chr7A.!!$F1 995
5 TraesCS2D01G331300 chr3B 783414076 783414617 541 False 226.000000 226 75.08700 1681 2240 1 chr3B.!!$F1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
668 2503 0.034477 CCCTAACCAAACTCGCCCAT 60.034 55.0 0.00 0.0 0.00 4.00 F
674 2509 0.251916 CCAAACTCGCCCATCCTACA 59.748 55.0 0.00 0.0 0.00 2.74 F
1704 4101 0.465097 CATTACAGGCAGGCCAGGAG 60.465 60.0 13.63 2.0 38.92 3.69 F
2683 5218 0.383231 GCCTTGCTTCATTCCCATCG 59.617 55.0 0.00 0.0 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1676 4073 1.062002 CTGCCTGTAATGTTAACGCGG 59.938 52.381 12.47 0.0 0.0 6.46 R
2654 5189 1.539388 TGAAGCAAGGCATTTACACGG 59.461 47.619 0.00 0.0 0.0 4.94 R
2975 5514 0.404426 AGGGCCAGGAACAAAGTACC 59.596 55.000 6.18 0.0 0.0 3.34 R
4090 6784 0.105039 CTACTCCTTCCGGTCCATGC 59.895 60.000 0.00 0.0 0.0 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.764050 TCCAAGGTAGTTGAGTCACAAA 57.236 40.909 0.00 0.00 40.36 2.83
22 23 5.105567 TCCAAGGTAGTTGAGTCACAAAA 57.894 39.130 0.00 0.00 40.36 2.44
23 24 5.502079 TCCAAGGTAGTTGAGTCACAAAAA 58.498 37.500 0.00 0.00 40.36 1.94
24 25 6.126409 TCCAAGGTAGTTGAGTCACAAAAAT 58.874 36.000 0.00 0.00 40.36 1.82
25 26 7.284074 TCCAAGGTAGTTGAGTCACAAAAATA 58.716 34.615 0.00 0.00 40.36 1.40
26 27 7.227910 TCCAAGGTAGTTGAGTCACAAAAATAC 59.772 37.037 0.00 0.00 40.36 1.89
27 28 7.012894 CCAAGGTAGTTGAGTCACAAAAATACA 59.987 37.037 0.00 0.00 40.36 2.29
28 29 8.567948 CAAGGTAGTTGAGTCACAAAAATACAT 58.432 33.333 0.00 0.00 40.36 2.29
29 30 8.099364 AGGTAGTTGAGTCACAAAAATACATG 57.901 34.615 0.00 0.00 40.36 3.21
30 31 7.174946 AGGTAGTTGAGTCACAAAAATACATGG 59.825 37.037 0.00 0.00 40.36 3.66
31 32 6.959639 AGTTGAGTCACAAAAATACATGGT 57.040 33.333 0.00 0.00 40.36 3.55
32 33 6.738114 AGTTGAGTCACAAAAATACATGGTG 58.262 36.000 0.00 0.00 40.36 4.17
33 34 5.119931 TGAGTCACAAAAATACATGGTGC 57.880 39.130 0.00 0.00 0.00 5.01
34 35 4.582240 TGAGTCACAAAAATACATGGTGCA 59.418 37.500 0.00 0.00 0.00 4.57
35 36 5.243507 TGAGTCACAAAAATACATGGTGCAT 59.756 36.000 0.00 0.00 0.00 3.96
36 37 6.432472 TGAGTCACAAAAATACATGGTGCATA 59.568 34.615 0.00 0.00 0.00 3.14
37 38 7.040132 TGAGTCACAAAAATACATGGTGCATAA 60.040 33.333 0.00 0.00 0.00 1.90
38 39 7.839907 AGTCACAAAAATACATGGTGCATAAT 58.160 30.769 0.00 0.00 0.00 1.28
39 40 7.975616 AGTCACAAAAATACATGGTGCATAATC 59.024 33.333 0.00 0.00 0.00 1.75
40 41 7.758980 GTCACAAAAATACATGGTGCATAATCA 59.241 33.333 0.00 0.00 0.00 2.57
41 42 8.476447 TCACAAAAATACATGGTGCATAATCAT 58.524 29.630 0.00 0.00 0.00 2.45
42 43 8.757789 CACAAAAATACATGGTGCATAATCATC 58.242 33.333 0.00 0.00 0.00 2.92
43 44 7.648908 ACAAAAATACATGGTGCATAATCATCG 59.351 33.333 0.00 0.00 0.00 3.84
44 45 7.509141 AAAATACATGGTGCATAATCATCGA 57.491 32.000 0.00 0.00 0.00 3.59
45 46 7.692460 AAATACATGGTGCATAATCATCGAT 57.308 32.000 0.00 0.00 0.00 3.59
46 47 6.673154 ATACATGGTGCATAATCATCGATG 57.327 37.500 19.61 19.61 0.00 3.84
47 48 4.644498 ACATGGTGCATAATCATCGATGA 58.356 39.130 29.09 29.09 41.70 2.92
48 49 4.453478 ACATGGTGCATAATCATCGATGAC 59.547 41.667 29.49 16.86 40.03 3.06
49 50 4.070630 TGGTGCATAATCATCGATGACA 57.929 40.909 29.49 20.21 40.03 3.58
50 51 3.809279 TGGTGCATAATCATCGATGACAC 59.191 43.478 29.49 27.48 40.03 3.67
51 52 4.060900 GGTGCATAATCATCGATGACACT 58.939 43.478 29.68 21.14 40.03 3.55
52 53 5.221422 TGGTGCATAATCATCGATGACACTA 60.221 40.000 29.68 25.47 40.03 2.74
53 54 5.871524 GGTGCATAATCATCGATGACACTAT 59.128 40.000 29.68 23.01 40.03 2.12
54 55 7.035612 GGTGCATAATCATCGATGACACTATA 58.964 38.462 29.68 19.66 40.03 1.31
55 56 7.221645 GGTGCATAATCATCGATGACACTATAG 59.778 40.741 29.68 20.46 40.03 1.31
56 57 7.970614 GTGCATAATCATCGATGACACTATAGA 59.029 37.037 29.49 12.78 40.03 1.98
57 58 7.970614 TGCATAATCATCGATGACACTATAGAC 59.029 37.037 29.49 16.95 40.03 2.59
58 59 7.164990 GCATAATCATCGATGACACTATAGACG 59.835 40.741 29.49 14.37 40.03 4.18
59 60 5.553290 ATCATCGATGACACTATAGACGG 57.447 43.478 29.49 0.00 40.03 4.79
60 61 4.386711 TCATCGATGACACTATAGACGGT 58.613 43.478 23.99 1.44 0.00 4.83
61 62 4.213482 TCATCGATGACACTATAGACGGTG 59.787 45.833 23.99 8.46 39.13 4.94
62 63 2.876550 TCGATGACACTATAGACGGTGG 59.123 50.000 6.78 0.00 37.72 4.61
63 64 2.876550 CGATGACACTATAGACGGTGGA 59.123 50.000 6.78 0.00 37.72 4.02
64 65 3.314357 CGATGACACTATAGACGGTGGAA 59.686 47.826 6.78 0.00 37.72 3.53
65 66 4.554919 CGATGACACTATAGACGGTGGAAG 60.555 50.000 6.78 0.00 37.72 3.46
66 67 3.693807 TGACACTATAGACGGTGGAAGT 58.306 45.455 6.78 0.00 37.72 3.01
67 68 3.693085 TGACACTATAGACGGTGGAAGTC 59.307 47.826 6.78 0.00 37.72 3.01
68 69 2.681848 ACACTATAGACGGTGGAAGTCG 59.318 50.000 6.78 0.00 42.97 4.18
69 70 2.033049 CACTATAGACGGTGGAAGTCGG 59.967 54.545 6.78 0.00 42.97 4.79
70 71 2.295885 CTATAGACGGTGGAAGTCGGT 58.704 52.381 0.00 0.00 42.97 4.69
71 72 1.553706 ATAGACGGTGGAAGTCGGTT 58.446 50.000 0.00 0.00 42.97 4.44
72 73 0.599558 TAGACGGTGGAAGTCGGTTG 59.400 55.000 0.00 0.00 42.97 3.77
73 74 2.280592 ACGGTGGAAGTCGGTTGC 60.281 61.111 0.00 0.00 0.00 4.17
74 75 3.411351 CGGTGGAAGTCGGTTGCG 61.411 66.667 0.00 0.00 0.00 4.85
75 76 3.047877 GGTGGAAGTCGGTTGCGG 61.048 66.667 0.00 0.00 0.00 5.69
76 77 3.723348 GTGGAAGTCGGTTGCGGC 61.723 66.667 0.00 0.00 0.00 6.53
77 78 4.243008 TGGAAGTCGGTTGCGGCA 62.243 61.111 0.00 0.00 0.00 5.69
78 79 3.723348 GGAAGTCGGTTGCGGCAC 61.723 66.667 0.05 0.00 0.00 5.01
104 105 2.435372 AAAAAGAGTGGACACTGCCA 57.565 45.000 10.08 0.00 42.66 4.92
105 106 2.435372 AAAAGAGTGGACACTGCCAA 57.565 45.000 10.08 0.00 42.66 4.52
106 107 2.435372 AAAGAGTGGACACTGCCAAA 57.565 45.000 10.08 0.00 42.66 3.28
107 108 2.435372 AAGAGTGGACACTGCCAAAA 57.565 45.000 10.08 0.00 42.66 2.44
108 109 1.972872 AGAGTGGACACTGCCAAAAG 58.027 50.000 10.08 0.00 42.66 2.27
109 110 0.312102 GAGTGGACACTGCCAAAAGC 59.688 55.000 10.08 0.00 42.66 3.51
122 123 4.926140 GCCAAAAGCAGCTATATTTCCT 57.074 40.909 0.00 0.00 42.97 3.36
123 124 4.614946 GCCAAAAGCAGCTATATTTCCTG 58.385 43.478 0.00 0.00 42.97 3.86
124 125 4.339247 GCCAAAAGCAGCTATATTTCCTGA 59.661 41.667 0.00 0.00 42.97 3.86
125 126 5.163519 GCCAAAAGCAGCTATATTTCCTGAA 60.164 40.000 0.00 0.00 42.97 3.02
126 127 6.627953 GCCAAAAGCAGCTATATTTCCTGAAA 60.628 38.462 0.00 0.00 42.97 2.69
127 128 6.976925 CCAAAAGCAGCTATATTTCCTGAAAG 59.023 38.462 0.00 0.00 33.32 2.62
128 129 7.363268 CCAAAAGCAGCTATATTTCCTGAAAGT 60.363 37.037 0.00 0.00 33.32 2.66
129 130 6.690194 AAGCAGCTATATTTCCTGAAAGTG 57.310 37.500 0.00 0.00 33.32 3.16
130 131 5.128919 AGCAGCTATATTTCCTGAAAGTGG 58.871 41.667 0.00 0.00 33.32 4.00
131 132 5.104360 AGCAGCTATATTTCCTGAAAGTGGA 60.104 40.000 0.00 0.00 33.32 4.02
132 133 5.590259 GCAGCTATATTTCCTGAAAGTGGAA 59.410 40.000 0.00 0.00 41.33 3.53
133 134 6.264067 GCAGCTATATTTCCTGAAAGTGGAAT 59.736 38.462 0.00 0.00 42.41 3.01
134 135 7.646314 CAGCTATATTTCCTGAAAGTGGAATG 58.354 38.462 0.00 0.00 42.41 2.67
135 136 7.284034 CAGCTATATTTCCTGAAAGTGGAATGT 59.716 37.037 0.00 0.00 42.41 2.71
136 137 7.500559 AGCTATATTTCCTGAAAGTGGAATGTC 59.499 37.037 0.00 0.00 42.41 3.06
137 138 7.283127 GCTATATTTCCTGAAAGTGGAATGTCA 59.717 37.037 0.00 0.00 42.41 3.58
138 139 9.177608 CTATATTTCCTGAAAGTGGAATGTCAA 57.822 33.333 0.00 0.00 42.41 3.18
139 140 6.729690 ATTTCCTGAAAGTGGAATGTCAAA 57.270 33.333 0.00 0.00 42.41 2.69
140 141 5.772825 TTCCTGAAAGTGGAATGTCAAAG 57.227 39.130 0.00 0.00 38.53 2.77
141 142 5.047566 TCCTGAAAGTGGAATGTCAAAGA 57.952 39.130 0.00 0.00 0.00 2.52
142 143 5.634118 TCCTGAAAGTGGAATGTCAAAGAT 58.366 37.500 0.00 0.00 0.00 2.40
143 144 6.778821 TCCTGAAAGTGGAATGTCAAAGATA 58.221 36.000 0.00 0.00 0.00 1.98
144 145 7.230747 TCCTGAAAGTGGAATGTCAAAGATAA 58.769 34.615 0.00 0.00 0.00 1.75
145 146 7.174946 TCCTGAAAGTGGAATGTCAAAGATAAC 59.825 37.037 0.00 0.00 0.00 1.89
146 147 7.040478 CCTGAAAGTGGAATGTCAAAGATAACA 60.040 37.037 0.00 0.00 0.00 2.41
147 148 8.231692 TGAAAGTGGAATGTCAAAGATAACAA 57.768 30.769 0.00 0.00 0.00 2.83
148 149 8.690884 TGAAAGTGGAATGTCAAAGATAACAAA 58.309 29.630 0.00 0.00 0.00 2.83
149 150 9.528018 GAAAGTGGAATGTCAAAGATAACAAAA 57.472 29.630 0.00 0.00 0.00 2.44
150 151 9.533253 AAAGTGGAATGTCAAAGATAACAAAAG 57.467 29.630 0.00 0.00 0.00 2.27
151 152 8.463930 AGTGGAATGTCAAAGATAACAAAAGA 57.536 30.769 0.00 0.00 0.00 2.52
152 153 8.912988 AGTGGAATGTCAAAGATAACAAAAGAA 58.087 29.630 0.00 0.00 0.00 2.52
153 154 9.696917 GTGGAATGTCAAAGATAACAAAAGAAT 57.303 29.630 0.00 0.00 0.00 2.40
166 167 9.665264 GATAACAAAAGAATTAAATAGCCGAGG 57.335 33.333 0.00 0.00 0.00 4.63
167 168 5.891451 ACAAAAGAATTAAATAGCCGAGGC 58.109 37.500 5.89 5.89 42.33 4.70
177 178 2.563427 GCCGAGGCTTTCAACTGC 59.437 61.111 6.90 0.00 38.26 4.40
178 179 2.260869 GCCGAGGCTTTCAACTGCA 61.261 57.895 6.90 0.00 38.26 4.41
179 180 1.589716 GCCGAGGCTTTCAACTGCAT 61.590 55.000 6.90 0.00 38.26 3.96
180 181 1.737838 CCGAGGCTTTCAACTGCATA 58.262 50.000 0.00 0.00 0.00 3.14
181 182 2.083774 CCGAGGCTTTCAACTGCATAA 58.916 47.619 0.00 0.00 0.00 1.90
182 183 2.487762 CCGAGGCTTTCAACTGCATAAA 59.512 45.455 0.00 0.00 0.00 1.40
183 184 3.057596 CCGAGGCTTTCAACTGCATAAAA 60.058 43.478 0.00 0.00 0.00 1.52
184 185 4.161333 CGAGGCTTTCAACTGCATAAAAG 58.839 43.478 0.00 0.00 33.01 2.27
185 186 4.488879 GAGGCTTTCAACTGCATAAAAGG 58.511 43.478 10.40 0.00 31.03 3.11
186 187 3.259123 AGGCTTTCAACTGCATAAAAGGG 59.741 43.478 10.40 0.00 31.03 3.95
187 188 3.258123 GGCTTTCAACTGCATAAAAGGGA 59.742 43.478 10.40 0.00 31.03 4.20
188 189 4.081476 GGCTTTCAACTGCATAAAAGGGAT 60.081 41.667 10.40 0.00 31.03 3.85
189 190 4.866486 GCTTTCAACTGCATAAAAGGGATG 59.134 41.667 10.40 0.00 31.03 3.51
190 191 5.567423 GCTTTCAACTGCATAAAAGGGATGT 60.567 40.000 10.40 0.00 31.03 3.06
191 192 5.643379 TTCAACTGCATAAAAGGGATGTC 57.357 39.130 0.00 0.00 0.00 3.06
192 193 4.661222 TCAACTGCATAAAAGGGATGTCA 58.339 39.130 0.00 0.00 0.00 3.58
193 194 5.076182 TCAACTGCATAAAAGGGATGTCAA 58.924 37.500 0.00 0.00 0.00 3.18
194 195 5.538053 TCAACTGCATAAAAGGGATGTCAAA 59.462 36.000 0.00 0.00 0.00 2.69
195 196 6.041409 TCAACTGCATAAAAGGGATGTCAAAA 59.959 34.615 0.00 0.00 0.00 2.44
196 197 6.610075 ACTGCATAAAAGGGATGTCAAAAT 57.390 33.333 0.00 0.00 0.00 1.82
197 198 7.716799 ACTGCATAAAAGGGATGTCAAAATA 57.283 32.000 0.00 0.00 0.00 1.40
198 199 8.133024 ACTGCATAAAAGGGATGTCAAAATAA 57.867 30.769 0.00 0.00 0.00 1.40
199 200 8.761689 ACTGCATAAAAGGGATGTCAAAATAAT 58.238 29.630 0.00 0.00 0.00 1.28
200 201 9.603921 CTGCATAAAAGGGATGTCAAAATAATT 57.396 29.630 0.00 0.00 0.00 1.40
201 202 9.956640 TGCATAAAAGGGATGTCAAAATAATTT 57.043 25.926 0.00 0.00 0.00 1.82
231 232 9.967346 TCATCCTCTGTTTCTAAATATAAGACG 57.033 33.333 0.00 0.00 0.00 4.18
232 233 9.751542 CATCCTCTGTTTCTAAATATAAGACGT 57.248 33.333 0.00 0.00 0.00 4.34
240 241 9.968743 GTTTCTAAATATAAGACGTTTCAGTGG 57.031 33.333 0.00 0.00 0.00 4.00
241 242 9.715121 TTTCTAAATATAAGACGTTTCAGTGGT 57.285 29.630 0.00 0.00 0.00 4.16
242 243 9.715121 TTCTAAATATAAGACGTTTCAGTGGTT 57.285 29.630 0.00 0.00 0.00 3.67
243 244 9.715121 TCTAAATATAAGACGTTTCAGTGGTTT 57.285 29.630 0.00 0.00 0.00 3.27
251 252 7.198306 AGACGTTTCAGTGGTTTAATTTAGG 57.802 36.000 0.00 0.00 0.00 2.69
252 253 6.993902 AGACGTTTCAGTGGTTTAATTTAGGA 59.006 34.615 0.00 0.00 0.00 2.94
253 254 7.499895 AGACGTTTCAGTGGTTTAATTTAGGAA 59.500 33.333 0.00 0.00 0.00 3.36
254 255 7.645402 ACGTTTCAGTGGTTTAATTTAGGAAG 58.355 34.615 0.00 0.00 0.00 3.46
255 256 7.499895 ACGTTTCAGTGGTTTAATTTAGGAAGA 59.500 33.333 0.00 0.00 0.00 2.87
256 257 8.015658 CGTTTCAGTGGTTTAATTTAGGAAGAG 58.984 37.037 0.00 0.00 0.00 2.85
257 258 9.063615 GTTTCAGTGGTTTAATTTAGGAAGAGA 57.936 33.333 0.00 0.00 0.00 3.10
258 259 9.807921 TTTCAGTGGTTTAATTTAGGAAGAGAT 57.192 29.630 0.00 0.00 0.00 2.75
259 260 8.792830 TCAGTGGTTTAATTTAGGAAGAGATG 57.207 34.615 0.00 0.00 0.00 2.90
260 261 8.383175 TCAGTGGTTTAATTTAGGAAGAGATGT 58.617 33.333 0.00 0.00 0.00 3.06
261 262 9.667107 CAGTGGTTTAATTTAGGAAGAGATGTA 57.333 33.333 0.00 0.00 0.00 2.29
262 263 9.892130 AGTGGTTTAATTTAGGAAGAGATGTAG 57.108 33.333 0.00 0.00 0.00 2.74
263 264 8.613482 GTGGTTTAATTTAGGAAGAGATGTAGC 58.387 37.037 0.00 0.00 0.00 3.58
264 265 8.325787 TGGTTTAATTTAGGAAGAGATGTAGCA 58.674 33.333 0.00 0.00 0.00 3.49
265 266 8.831550 GGTTTAATTTAGGAAGAGATGTAGCAG 58.168 37.037 0.00 0.00 0.00 4.24
266 267 9.384764 GTTTAATTTAGGAAGAGATGTAGCAGT 57.615 33.333 0.00 0.00 0.00 4.40
267 268 9.959721 TTTAATTTAGGAAGAGATGTAGCAGTT 57.040 29.630 0.00 0.00 0.00 3.16
268 269 9.601217 TTAATTTAGGAAGAGATGTAGCAGTTC 57.399 33.333 0.00 0.00 0.00 3.01
269 270 6.859112 TTTAGGAAGAGATGTAGCAGTTCT 57.141 37.500 0.00 0.00 0.00 3.01
270 271 6.859112 TTAGGAAGAGATGTAGCAGTTCTT 57.141 37.500 0.00 0.00 0.00 2.52
271 272 5.337578 AGGAAGAGATGTAGCAGTTCTTC 57.662 43.478 12.79 12.79 41.74 2.87
273 274 3.791973 AGAGATGTAGCAGTTCTTCCG 57.208 47.619 0.00 0.00 0.00 4.30
274 275 3.093057 AGAGATGTAGCAGTTCTTCCGT 58.907 45.455 0.00 0.00 0.00 4.69
281 282 3.678056 AGCAGTTCTTCCGTATTGACA 57.322 42.857 0.00 0.00 0.00 3.58
288 289 4.545208 TCTTCCGTATTGACATGGTTGA 57.455 40.909 0.00 0.00 0.00 3.18
293 294 3.312421 CCGTATTGACATGGTTGATGGTC 59.688 47.826 0.00 0.00 36.23 4.02
305 306 5.197451 TGGTTGATGGTCAATAATGGTACC 58.803 41.667 4.43 4.43 38.79 3.34
338 339 2.209273 GCAACCCAACACAACATTTCC 58.791 47.619 0.00 0.00 0.00 3.13
359 360 1.043116 TATCCTCAGGTGGCCGACTG 61.043 60.000 17.82 17.82 36.07 3.51
372 373 2.665603 GACTGGCCTGGTGACTCC 59.334 66.667 14.82 0.00 0.00 3.85
378 379 1.681327 GCCTGGTGACTCCTCCGTA 60.681 63.158 0.00 0.00 37.07 4.02
391 392 0.738975 CTCCGTATCCAGCGTGAGAA 59.261 55.000 0.00 0.00 32.46 2.87
396 397 0.175760 TATCCAGCGTGAGAAGGCAC 59.824 55.000 0.00 0.00 35.46 5.01
399 400 2.031163 AGCGTGAGAAGGCACACC 59.969 61.111 0.00 0.00 38.69 4.16
425 428 6.435904 TGTAGCTTGTAGCCAACCAAATAATT 59.564 34.615 0.00 0.00 43.77 1.40
466 479 2.086054 ATGTTGGAGAGCACGAGTTC 57.914 50.000 0.00 0.00 0.00 3.01
477 490 1.148310 CACGAGTTCGAGTGGCATTT 58.852 50.000 8.72 0.00 43.02 2.32
478 491 1.136252 CACGAGTTCGAGTGGCATTTG 60.136 52.381 8.72 0.00 43.02 2.32
479 492 0.443869 CGAGTTCGAGTGGCATTTGG 59.556 55.000 0.00 0.00 43.02 3.28
480 493 0.169009 GAGTTCGAGTGGCATTTGGC 59.831 55.000 0.00 0.00 43.74 4.52
490 503 2.170153 TGGCATTTGGCATTGGCACTA 61.170 47.619 18.97 4.58 46.12 2.74
505 518 4.760047 CTACTGGCACGCCGGCTT 62.760 66.667 26.68 13.70 46.14 4.35
509 522 4.947147 TGGCACGCCGGCTTCTTT 62.947 61.111 26.68 0.00 41.89 2.52
510 523 4.404654 GGCACGCCGGCTTCTTTG 62.405 66.667 26.68 14.05 37.17 2.77
513 526 2.594592 ACGCCGGCTTCTTTGCTT 60.595 55.556 26.68 0.00 0.00 3.91
514 527 2.176792 CGCCGGCTTCTTTGCTTC 59.823 61.111 26.68 0.00 0.00 3.86
516 529 1.503994 GCCGGCTTCTTTGCTTCTC 59.496 57.895 22.15 0.00 0.00 2.87
609 2444 0.102663 GGGTCTACAAGCCGACTAGC 59.897 60.000 0.00 0.00 35.40 3.42
618 2453 2.522836 AGCCGACTAGCTTCATGATG 57.477 50.000 0.00 0.00 41.41 3.07
623 2458 4.375272 CCGACTAGCTTCATGATGACAAT 58.625 43.478 12.54 0.00 0.00 2.71
624 2459 4.447054 CCGACTAGCTTCATGATGACAATC 59.553 45.833 12.54 3.74 0.00 2.67
625 2460 4.447054 CGACTAGCTTCATGATGACAATCC 59.553 45.833 12.54 0.00 31.15 3.01
626 2461 5.609423 GACTAGCTTCATGATGACAATCCT 58.391 41.667 12.54 1.86 31.15 3.24
627 2462 5.366460 ACTAGCTTCATGATGACAATCCTG 58.634 41.667 12.54 0.00 31.63 3.86
628 2463 4.498894 AGCTTCATGATGACAATCCTGA 57.501 40.909 12.54 0.00 36.15 3.86
629 2464 4.851843 AGCTTCATGATGACAATCCTGAA 58.148 39.130 12.54 6.35 41.99 3.02
630 2465 4.639310 AGCTTCATGATGACAATCCTGAAC 59.361 41.667 12.54 2.42 40.43 3.18
631 2466 4.201990 GCTTCATGATGACAATCCTGAACC 60.202 45.833 12.54 0.00 40.43 3.62
632 2467 3.889815 TCATGATGACAATCCTGAACCC 58.110 45.455 0.00 0.00 35.34 4.11
633 2468 2.401583 TGATGACAATCCTGAACCCG 57.598 50.000 0.00 0.00 31.15 5.28
634 2469 1.065491 TGATGACAATCCTGAACCCGG 60.065 52.381 0.00 0.00 31.15 5.73
635 2470 0.394352 ATGACAATCCTGAACCCGGC 60.394 55.000 0.00 0.00 0.00 6.13
636 2471 1.749258 GACAATCCTGAACCCGGCC 60.749 63.158 0.00 0.00 0.00 6.13
637 2472 2.440247 CAATCCTGAACCCGGCCC 60.440 66.667 0.00 0.00 0.00 5.80
638 2473 4.109675 AATCCTGAACCCGGCCCG 62.110 66.667 0.00 0.00 0.00 6.13
654 2489 3.751246 CGACGTGCCGACCCCTAA 61.751 66.667 0.00 0.00 0.00 2.69
655 2490 2.125793 GACGTGCCGACCCCTAAC 60.126 66.667 0.00 0.00 0.00 2.34
656 2491 3.654173 GACGTGCCGACCCCTAACC 62.654 68.421 0.00 0.00 0.00 2.85
657 2492 3.697747 CGTGCCGACCCCTAACCA 61.698 66.667 0.00 0.00 0.00 3.67
658 2493 2.751688 GTGCCGACCCCTAACCAA 59.248 61.111 0.00 0.00 0.00 3.67
659 2494 1.073548 GTGCCGACCCCTAACCAAA 59.926 57.895 0.00 0.00 0.00 3.28
660 2495 1.073548 TGCCGACCCCTAACCAAAC 59.926 57.895 0.00 0.00 0.00 2.93
661 2496 1.377612 GCCGACCCCTAACCAAACT 59.622 57.895 0.00 0.00 0.00 2.66
662 2497 0.675837 GCCGACCCCTAACCAAACTC 60.676 60.000 0.00 0.00 0.00 3.01
663 2498 0.390735 CCGACCCCTAACCAAACTCG 60.391 60.000 0.00 0.00 0.00 4.18
664 2499 1.017701 CGACCCCTAACCAAACTCGC 61.018 60.000 0.00 0.00 0.00 5.03
665 2500 0.675837 GACCCCTAACCAAACTCGCC 60.676 60.000 0.00 0.00 0.00 5.54
666 2501 1.378119 CCCCTAACCAAACTCGCCC 60.378 63.158 0.00 0.00 0.00 6.13
667 2502 1.377229 CCCTAACCAAACTCGCCCA 59.623 57.895 0.00 0.00 0.00 5.36
668 2503 0.034477 CCCTAACCAAACTCGCCCAT 60.034 55.000 0.00 0.00 0.00 4.00
669 2504 1.379527 CCTAACCAAACTCGCCCATC 58.620 55.000 0.00 0.00 0.00 3.51
670 2505 1.379527 CTAACCAAACTCGCCCATCC 58.620 55.000 0.00 0.00 0.00 3.51
671 2506 0.988832 TAACCAAACTCGCCCATCCT 59.011 50.000 0.00 0.00 0.00 3.24
672 2507 0.988832 AACCAAACTCGCCCATCCTA 59.011 50.000 0.00 0.00 0.00 2.94
673 2508 0.252197 ACCAAACTCGCCCATCCTAC 59.748 55.000 0.00 0.00 0.00 3.18
674 2509 0.251916 CCAAACTCGCCCATCCTACA 59.748 55.000 0.00 0.00 0.00 2.74
675 2510 1.656652 CAAACTCGCCCATCCTACAG 58.343 55.000 0.00 0.00 0.00 2.74
676 2511 1.066143 CAAACTCGCCCATCCTACAGT 60.066 52.381 0.00 0.00 0.00 3.55
686 2521 2.233922 CCATCCTACAGTTCCAGTTCGT 59.766 50.000 0.00 0.00 0.00 3.85
690 2525 3.255149 TCCTACAGTTCCAGTTCGTTCTC 59.745 47.826 0.00 0.00 0.00 2.87
700 2535 1.079405 TTCGTTCTCCATCCACGGC 60.079 57.895 0.00 0.00 34.61 5.68
727 2562 2.436646 CCCGTGCGCTCCATCTTT 60.437 61.111 9.73 0.00 0.00 2.52
729 2564 2.753966 CCGTGCGCTCCATCTTTGG 61.754 63.158 9.73 0.00 45.15 3.28
733 2568 2.048603 GCGCTCCATCTTTGGGCTT 61.049 57.895 0.00 0.00 43.81 4.35
738 2574 1.079073 CCATCTTTGGGCTTGGGGT 59.921 57.895 0.00 0.00 39.56 4.95
740 2576 0.897621 CATCTTTGGGCTTGGGGTTC 59.102 55.000 0.00 0.00 0.00 3.62
754 2590 3.423154 GTTCGCTTGCTCCCACCG 61.423 66.667 0.00 0.00 0.00 4.94
861 2703 2.202932 CGCCCCCAGATCAGTTCG 60.203 66.667 0.00 0.00 0.00 3.95
1145 3031 1.001269 TCGTCGGGGAGATCTGTGT 60.001 57.895 0.00 0.00 0.00 3.72
1466 3397 1.933853 GTGGCGCTAGGAATTACTGTG 59.066 52.381 7.64 0.00 0.00 3.66
1499 3445 7.783042 AGGATAATCGTAGAGTTAAAACTGCT 58.217 34.615 0.00 0.91 43.63 4.24
1638 4033 5.719085 TGCCATAAACCTTGGTGTCATATTT 59.281 36.000 0.00 0.00 36.57 1.40
1701 4098 2.418368 TAACATTACAGGCAGGCCAG 57.582 50.000 13.63 7.16 38.92 4.85
1704 4101 0.465097 CATTACAGGCAGGCCAGGAG 60.465 60.000 13.63 2.00 38.92 3.69
2125 4535 3.347216 TCTCTGTGCAATTAAGGCCTTC 58.653 45.455 24.49 7.84 0.00 3.46
2129 4539 2.224992 TGTGCAATTAAGGCCTTCTCCA 60.225 45.455 24.49 10.53 0.00 3.86
2158 4573 8.279970 ACCATTGTCTCATTCGATTTGAAATA 57.720 30.769 0.00 0.00 40.71 1.40
2336 4754 5.984926 ACTTATGCACCACAAAATTTGTCTG 59.015 36.000 8.59 8.30 43.23 3.51
2337 4755 4.669206 ATGCACCACAAAATTTGTCTGA 57.331 36.364 8.59 0.00 43.23 3.27
2338 4756 4.669206 TGCACCACAAAATTTGTCTGAT 57.331 36.364 8.59 0.00 43.23 2.90
2357 4892 8.200120 TGTCTGATGTACCTAAATGAGATTCAG 58.800 37.037 0.00 0.00 0.00 3.02
2407 4942 6.203530 TGTCTGCTTAGTGAAAAGTGAGATTG 59.796 38.462 0.00 0.00 0.00 2.67
2488 5023 7.393234 CACAAAATTTCCCTGGTATGTAGAGAA 59.607 37.037 0.00 0.00 0.00 2.87
2489 5024 7.393515 ACAAAATTTCCCTGGTATGTAGAGAAC 59.606 37.037 0.00 0.00 0.00 3.01
2490 5025 6.893020 AATTTCCCTGGTATGTAGAGAACT 57.107 37.500 0.00 0.00 0.00 3.01
2491 5026 7.989947 AATTTCCCTGGTATGTAGAGAACTA 57.010 36.000 0.00 0.00 0.00 2.24
2492 5027 7.604657 ATTTCCCTGGTATGTAGAGAACTAG 57.395 40.000 0.00 0.00 0.00 2.57
2493 5028 5.988865 TCCCTGGTATGTAGAGAACTAGA 57.011 43.478 0.00 0.00 0.00 2.43
2494 5029 5.942961 TCCCTGGTATGTAGAGAACTAGAG 58.057 45.833 0.00 0.00 0.00 2.43
2495 5030 5.670818 TCCCTGGTATGTAGAGAACTAGAGA 59.329 44.000 0.00 0.00 0.00 3.10
2510 5045 5.428184 ACTAGAGATGCCTTTTAAGTGCT 57.572 39.130 0.00 0.00 0.00 4.40
2659 5194 1.071699 AGCACAAGATACAACCCGTGT 59.928 47.619 0.00 0.00 44.82 4.49
2661 5196 3.068560 GCACAAGATACAACCCGTGTAA 58.931 45.455 0.00 0.00 45.81 2.41
2683 5218 0.383231 GCCTTGCTTCATTCCCATCG 59.617 55.000 0.00 0.00 0.00 3.84
2736 5271 9.128715 AGCCTTTATATGGACCCTAATAAGATT 57.871 33.333 0.00 0.00 0.00 2.40
2925 5464 5.923733 TTCCTGCCAAGAACACTTTTAAA 57.076 34.783 0.00 0.00 0.00 1.52
2970 5509 3.942130 AAGGTTACATTGCTGCTTTCC 57.058 42.857 0.00 0.00 0.00 3.13
2973 5512 2.094545 GGTTACATTGCTGCTTTCCCTG 60.095 50.000 0.00 0.00 0.00 4.45
2975 5514 1.153901 CATTGCTGCTTTCCCTGCG 60.154 57.895 0.00 0.00 33.01 5.18
3002 5541 2.233566 TTCCTGGCCCTGAGCATGT 61.234 57.895 0.00 0.00 46.50 3.21
3011 5550 2.615912 GCCCTGAGCATGTACTGATTTC 59.384 50.000 0.00 0.00 42.97 2.17
3014 5553 4.125703 CCTGAGCATGTACTGATTTCTCC 58.874 47.826 0.00 0.00 0.00 3.71
3032 5571 5.862924 TCTCCTCTTAATTTTTGCAGTCG 57.137 39.130 0.00 0.00 0.00 4.18
3086 5625 4.341783 GCTGGAGGTGCTGGTGCT 62.342 66.667 0.00 0.00 40.48 4.40
3252 5799 3.281727 TGGATTATGTTCCAGTGAGCC 57.718 47.619 0.00 0.00 40.90 4.70
3321 5873 2.273538 ATCCATCAGATGCTTCCAGC 57.726 50.000 4.68 0.00 42.82 4.85
3375 5932 8.530311 TCCATTTGCATGTGTGATTAAATAAGT 58.470 29.630 0.00 0.00 0.00 2.24
3415 5972 7.865385 TGTGTATGTTTAAATCAGCTCAAAACC 59.135 33.333 0.00 0.00 30.75 3.27
3425 5982 1.063266 AGCTCAAAACCTTTGGGTCCA 60.063 47.619 1.26 0.00 46.67 4.02
3429 5986 2.024846 TCAAAACCTTTGGGTCCACAGA 60.025 45.455 4.84 0.00 46.67 3.41
3449 6006 8.621286 CCACAGACTTTAAAGTTATTGAACACT 58.379 33.333 21.40 8.22 39.88 3.55
3450 6007 9.438291 CACAGACTTTAAAGTTATTGAACACTG 57.562 33.333 21.40 19.82 39.88 3.66
3498 6057 1.843368 CCTGACTAGGTAACCCGTGA 58.157 55.000 0.00 0.00 39.39 4.35
3537 6096 5.284079 TGAGCTTGTGAAATTTGAGCTTTC 58.716 37.500 13.13 0.00 43.22 2.62
3563 6122 4.520111 TCACTGAACATGAACCATCCAAAG 59.480 41.667 0.00 0.00 0.00 2.77
3566 6125 5.473504 ACTGAACATGAACCATCCAAAGTAC 59.526 40.000 0.00 0.00 0.00 2.73
3567 6126 5.630121 TGAACATGAACCATCCAAAGTACT 58.370 37.500 0.00 0.00 0.00 2.73
3568 6127 5.705441 TGAACATGAACCATCCAAAGTACTC 59.295 40.000 0.00 0.00 0.00 2.59
3569 6128 5.241403 ACATGAACCATCCAAAGTACTCA 57.759 39.130 0.00 0.00 0.00 3.41
3573 6132 6.428083 TGAACCATCCAAAGTACTCAGTTA 57.572 37.500 0.00 0.00 0.00 2.24
3611 6170 3.248266 GCTTGTTGCTATTTGGCTGAAG 58.752 45.455 0.00 0.00 38.95 3.02
3732 6305 8.154649 TCTCTTGTAATTGACTTGTTTTCCTC 57.845 34.615 0.00 0.00 0.00 3.71
3839 6413 2.844122 ACTTTGCTTGTTTGTCGACC 57.156 45.000 14.12 0.00 0.00 4.79
3841 6415 1.063469 CTTTGCTTGTTTGTCGACCGT 59.937 47.619 14.12 0.00 0.00 4.83
3843 6417 1.493772 TGCTTGTTTGTCGACCGTAG 58.506 50.000 14.12 4.64 0.00 3.51
3846 6420 2.097056 GCTTGTTTGTCGACCGTAGTTC 60.097 50.000 14.12 0.00 0.00 3.01
3874 6448 5.957798 TGAGTTACAACCATAGGTCTTACG 58.042 41.667 0.00 0.00 33.12 3.18
3879 6453 8.367156 AGTTACAACCATAGGTCTTACGTTTTA 58.633 33.333 0.00 0.00 33.12 1.52
3881 6455 9.553064 TTACAACCATAGGTCTTACGTTTTAAA 57.447 29.630 0.00 0.00 33.12 1.52
3886 6460 8.344831 ACCATAGGTCTTACGTTTTAAAACAAC 58.655 33.333 26.24 16.18 38.81 3.32
3898 6473 6.746822 CGTTTTAAAACAACGGGAGTAGTTTT 59.253 34.615 26.24 0.00 42.68 2.43
3900 6475 9.566530 GTTTTAAAACAACGGGAGTAGTTTTTA 57.433 29.630 23.12 0.00 46.69 1.52
3935 6620 7.569599 TTCTCCTCTTCAGGTTTATAAGGTT 57.430 36.000 0.00 0.00 41.28 3.50
3941 6626 7.450323 CCTCTTCAGGTTTATAAGGTTTGGAAA 59.550 37.037 0.00 0.00 34.60 3.13
3979 6664 4.396166 CCAGCTCGTTCCTACAAAATGATT 59.604 41.667 0.00 0.00 0.00 2.57
4021 6706 5.186021 CGAGAGCCCTGTATCCATATTAGTT 59.814 44.000 0.00 0.00 0.00 2.24
4022 6707 6.365970 AGAGCCCTGTATCCATATTAGTTG 57.634 41.667 0.00 0.00 0.00 3.16
4023 6708 5.846714 AGAGCCCTGTATCCATATTAGTTGT 59.153 40.000 0.00 0.00 0.00 3.32
4024 6709 6.330250 AGAGCCCTGTATCCATATTAGTTGTT 59.670 38.462 0.00 0.00 0.00 2.83
4025 6710 6.299141 AGCCCTGTATCCATATTAGTTGTTG 58.701 40.000 0.00 0.00 0.00 3.33
4036 6721 7.178274 TCCATATTAGTTGTTGGTTGCTGAAAT 59.822 33.333 0.00 0.00 0.00 2.17
4037 6722 8.465999 CCATATTAGTTGTTGGTTGCTGAAATA 58.534 33.333 0.00 0.00 0.00 1.40
4043 6728 7.721402 AGTTGTTGGTTGCTGAAATAAATGTA 58.279 30.769 0.00 0.00 0.00 2.29
4074 6768 9.784680 GACGTATTTCAGTTCTAGATACTTCAA 57.215 33.333 0.00 0.00 0.00 2.69
4083 6777 6.758886 AGTTCTAGATACTTCAATTTGAGCGG 59.241 38.462 0.00 0.00 0.00 5.52
4088 6782 3.665745 ACTTCAATTTGAGCGGCAATT 57.334 38.095 1.45 0.00 36.15 2.32
4090 6784 4.737054 ACTTCAATTTGAGCGGCAATTAG 58.263 39.130 1.45 0.00 36.15 1.73
4091 6785 3.149436 TCAATTTGAGCGGCAATTAGC 57.851 42.857 1.45 0.00 44.65 3.09
4116 6810 2.406205 CGGAAGGAGTAGGAGACGG 58.594 63.158 0.00 0.00 0.00 4.79
4117 6811 1.726533 CGGAAGGAGTAGGAGACGGC 61.727 65.000 0.00 0.00 0.00 5.68
4118 6812 1.393487 GGAAGGAGTAGGAGACGGCC 61.393 65.000 0.00 0.00 0.00 6.13
4119 6813 0.683504 GAAGGAGTAGGAGACGGCCA 60.684 60.000 2.24 0.00 31.80 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.764050 TTTGTGACTCAACTACCTTGGA 57.236 40.909 0.00 0.00 35.61 3.53
1 2 5.828299 TTTTTGTGACTCAACTACCTTGG 57.172 39.130 0.00 0.00 35.61 3.61
2 3 7.925993 TGTATTTTTGTGACTCAACTACCTTG 58.074 34.615 0.00 0.00 35.61 3.61
3 4 8.567948 CATGTATTTTTGTGACTCAACTACCTT 58.432 33.333 0.00 0.00 35.61 3.50
4 5 7.174946 CCATGTATTTTTGTGACTCAACTACCT 59.825 37.037 0.00 0.00 35.61 3.08
5 6 7.040686 ACCATGTATTTTTGTGACTCAACTACC 60.041 37.037 0.00 0.00 35.61 3.18
6 7 7.803189 CACCATGTATTTTTGTGACTCAACTAC 59.197 37.037 0.00 0.00 35.61 2.73
7 8 7.521423 GCACCATGTATTTTTGTGACTCAACTA 60.521 37.037 0.86 0.00 35.61 2.24
8 9 6.735694 GCACCATGTATTTTTGTGACTCAACT 60.736 38.462 0.86 0.00 35.61 3.16
9 10 5.402270 GCACCATGTATTTTTGTGACTCAAC 59.598 40.000 0.86 0.00 35.61 3.18
10 11 5.068329 TGCACCATGTATTTTTGTGACTCAA 59.932 36.000 0.86 0.00 0.00 3.02
11 12 4.582240 TGCACCATGTATTTTTGTGACTCA 59.418 37.500 0.86 0.00 0.00 3.41
12 13 5.119931 TGCACCATGTATTTTTGTGACTC 57.880 39.130 0.86 0.00 0.00 3.36
13 14 5.726980 ATGCACCATGTATTTTTGTGACT 57.273 34.783 0.00 0.00 0.00 3.41
14 15 7.758980 TGATTATGCACCATGTATTTTTGTGAC 59.241 33.333 0.00 0.00 0.00 3.67
15 16 7.834803 TGATTATGCACCATGTATTTTTGTGA 58.165 30.769 0.00 0.00 0.00 3.58
16 17 8.651391 ATGATTATGCACCATGTATTTTTGTG 57.349 30.769 0.00 0.00 0.00 3.33
17 18 7.648908 CGATGATTATGCACCATGTATTTTTGT 59.351 33.333 0.00 0.00 0.00 2.83
18 19 7.861872 TCGATGATTATGCACCATGTATTTTTG 59.138 33.333 0.00 0.00 0.00 2.44
19 20 7.939782 TCGATGATTATGCACCATGTATTTTT 58.060 30.769 0.00 0.00 0.00 1.94
20 21 7.509141 TCGATGATTATGCACCATGTATTTT 57.491 32.000 0.00 0.00 0.00 1.82
21 22 7.391275 TCATCGATGATTATGCACCATGTATTT 59.609 33.333 23.99 0.00 0.00 1.40
22 23 6.880529 TCATCGATGATTATGCACCATGTATT 59.119 34.615 23.99 0.00 0.00 1.89
23 24 6.314648 GTCATCGATGATTATGCACCATGTAT 59.685 38.462 29.53 0.00 39.30 2.29
24 25 5.639082 GTCATCGATGATTATGCACCATGTA 59.361 40.000 29.53 0.00 39.30 2.29
25 26 4.453478 GTCATCGATGATTATGCACCATGT 59.547 41.667 29.53 0.00 39.30 3.21
26 27 4.453136 TGTCATCGATGATTATGCACCATG 59.547 41.667 29.53 0.00 39.30 3.66
27 28 4.453478 GTGTCATCGATGATTATGCACCAT 59.547 41.667 29.53 0.00 39.30 3.55
28 29 3.809279 GTGTCATCGATGATTATGCACCA 59.191 43.478 29.53 17.38 39.30 4.17
29 30 4.060900 AGTGTCATCGATGATTATGCACC 58.939 43.478 29.53 15.09 39.30 5.01
30 31 6.957984 ATAGTGTCATCGATGATTATGCAC 57.042 37.500 29.53 27.75 39.30 4.57
31 32 7.970614 GTCTATAGTGTCATCGATGATTATGCA 59.029 37.037 29.53 19.44 39.30 3.96
32 33 7.164990 CGTCTATAGTGTCATCGATGATTATGC 59.835 40.741 29.53 17.15 39.30 3.14
33 34 7.641802 CCGTCTATAGTGTCATCGATGATTATG 59.358 40.741 29.53 18.82 39.30 1.90
34 35 7.337184 ACCGTCTATAGTGTCATCGATGATTAT 59.663 37.037 29.53 25.10 39.30 1.28
35 36 6.653740 ACCGTCTATAGTGTCATCGATGATTA 59.346 38.462 29.53 21.14 39.30 1.75
36 37 5.473846 ACCGTCTATAGTGTCATCGATGATT 59.526 40.000 29.53 19.85 39.30 2.57
37 38 5.004448 ACCGTCTATAGTGTCATCGATGAT 58.996 41.667 29.53 17.13 39.30 2.45
38 39 4.213482 CACCGTCTATAGTGTCATCGATGA 59.787 45.833 23.99 23.99 0.00 2.92
39 40 4.467735 CACCGTCTATAGTGTCATCGATG 58.532 47.826 19.61 19.61 0.00 3.84
40 41 3.502595 CCACCGTCTATAGTGTCATCGAT 59.497 47.826 0.00 0.00 31.88 3.59
41 42 2.876550 CCACCGTCTATAGTGTCATCGA 59.123 50.000 0.00 0.00 31.88 3.59
42 43 2.876550 TCCACCGTCTATAGTGTCATCG 59.123 50.000 0.00 0.00 31.88 3.84
43 44 4.338682 ACTTCCACCGTCTATAGTGTCATC 59.661 45.833 0.00 0.00 31.88 2.92
44 45 4.279145 ACTTCCACCGTCTATAGTGTCAT 58.721 43.478 0.00 0.00 31.88 3.06
45 46 3.693085 GACTTCCACCGTCTATAGTGTCA 59.307 47.826 0.00 0.00 31.88 3.58
46 47 3.242673 CGACTTCCACCGTCTATAGTGTC 60.243 52.174 0.00 0.00 31.88 3.67
47 48 2.681848 CGACTTCCACCGTCTATAGTGT 59.318 50.000 0.00 0.00 31.88 3.55
48 49 2.033049 CCGACTTCCACCGTCTATAGTG 59.967 54.545 0.00 0.00 0.00 2.74
49 50 2.295885 CCGACTTCCACCGTCTATAGT 58.704 52.381 0.00 0.00 0.00 2.12
50 51 2.295885 ACCGACTTCCACCGTCTATAG 58.704 52.381 0.00 0.00 0.00 1.31
51 52 2.424601 CAACCGACTTCCACCGTCTATA 59.575 50.000 0.00 0.00 0.00 1.31
52 53 1.203994 CAACCGACTTCCACCGTCTAT 59.796 52.381 0.00 0.00 0.00 1.98
53 54 0.599558 CAACCGACTTCCACCGTCTA 59.400 55.000 0.00 0.00 0.00 2.59
54 55 1.366366 CAACCGACTTCCACCGTCT 59.634 57.895 0.00 0.00 0.00 4.18
55 56 2.315386 GCAACCGACTTCCACCGTC 61.315 63.158 0.00 0.00 0.00 4.79
56 57 2.280592 GCAACCGACTTCCACCGT 60.281 61.111 0.00 0.00 0.00 4.83
57 58 3.411351 CGCAACCGACTTCCACCG 61.411 66.667 0.00 0.00 36.29 4.94
58 59 3.047877 CCGCAACCGACTTCCACC 61.048 66.667 0.00 0.00 36.29 4.61
59 60 3.723348 GCCGCAACCGACTTCCAC 61.723 66.667 0.00 0.00 36.29 4.02
60 61 4.243008 TGCCGCAACCGACTTCCA 62.243 61.111 0.00 0.00 36.29 3.53
61 62 3.723348 GTGCCGCAACCGACTTCC 61.723 66.667 0.00 0.00 36.29 3.46
62 63 4.072088 CGTGCCGCAACCGACTTC 62.072 66.667 0.00 0.00 36.29 3.01
68 69 2.065906 TTTTCTTCCGTGCCGCAACC 62.066 55.000 0.00 0.00 0.00 3.77
69 70 0.248702 TTTTTCTTCCGTGCCGCAAC 60.249 50.000 0.00 0.00 0.00 4.17
70 71 2.107705 TTTTTCTTCCGTGCCGCAA 58.892 47.368 0.00 0.00 0.00 4.85
71 72 3.829048 TTTTTCTTCCGTGCCGCA 58.171 50.000 0.00 0.00 0.00 5.69
85 86 2.435372 TGGCAGTGTCCACTCTTTTT 57.565 45.000 0.00 0.00 40.20 1.94
86 87 2.435372 TTGGCAGTGTCCACTCTTTT 57.565 45.000 5.87 0.00 40.20 2.27
87 88 2.435372 TTTGGCAGTGTCCACTCTTT 57.565 45.000 5.87 0.00 40.20 2.52
88 89 2.301346 CTTTTGGCAGTGTCCACTCTT 58.699 47.619 5.87 0.00 40.20 2.85
89 90 1.972872 CTTTTGGCAGTGTCCACTCT 58.027 50.000 5.87 0.00 40.20 3.24
90 91 0.312102 GCTTTTGGCAGTGTCCACTC 59.688 55.000 5.87 0.00 40.20 3.51
91 92 2.419057 GCTTTTGGCAGTGTCCACT 58.581 52.632 5.87 0.00 43.61 4.00
101 102 4.339247 TCAGGAAATATAGCTGCTTTTGGC 59.661 41.667 7.79 0.00 42.22 4.52
102 103 6.455360 TTCAGGAAATATAGCTGCTTTTGG 57.545 37.500 7.79 0.00 0.00 3.28
103 104 7.487189 CACTTTCAGGAAATATAGCTGCTTTTG 59.513 37.037 7.79 0.00 0.00 2.44
104 105 7.363268 CCACTTTCAGGAAATATAGCTGCTTTT 60.363 37.037 7.79 1.93 0.00 2.27
105 106 6.096001 CCACTTTCAGGAAATATAGCTGCTTT 59.904 38.462 7.79 1.86 0.00 3.51
106 107 5.591877 CCACTTTCAGGAAATATAGCTGCTT 59.408 40.000 7.79 0.00 0.00 3.91
107 108 5.104360 TCCACTTTCAGGAAATATAGCTGCT 60.104 40.000 7.57 7.57 30.71 4.24
108 109 5.126067 TCCACTTTCAGGAAATATAGCTGC 58.874 41.667 0.00 0.00 30.71 5.25
119 120 5.047566 TCTTTGACATTCCACTTTCAGGA 57.952 39.130 0.00 0.00 0.00 3.86
120 121 5.972107 ATCTTTGACATTCCACTTTCAGG 57.028 39.130 0.00 0.00 0.00 3.86
121 122 7.874940 TGTTATCTTTGACATTCCACTTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
122 123 7.815840 TGTTATCTTTGACATTCCACTTTCA 57.184 32.000 0.00 0.00 0.00 2.69
123 124 9.528018 TTTTGTTATCTTTGACATTCCACTTTC 57.472 29.630 0.00 0.00 0.00 2.62
124 125 9.533253 CTTTTGTTATCTTTGACATTCCACTTT 57.467 29.630 0.00 0.00 0.00 2.66
125 126 8.912988 TCTTTTGTTATCTTTGACATTCCACTT 58.087 29.630 0.00 0.00 0.00 3.16
126 127 8.463930 TCTTTTGTTATCTTTGACATTCCACT 57.536 30.769 0.00 0.00 0.00 4.00
127 128 9.696917 ATTCTTTTGTTATCTTTGACATTCCAC 57.303 29.630 0.00 0.00 0.00 4.02
140 141 9.665264 CCTCGGCTATTTAATTCTTTTGTTATC 57.335 33.333 0.00 0.00 0.00 1.75
141 142 8.135529 GCCTCGGCTATTTAATTCTTTTGTTAT 58.864 33.333 0.00 0.00 38.26 1.89
142 143 7.477494 GCCTCGGCTATTTAATTCTTTTGTTA 58.523 34.615 0.00 0.00 38.26 2.41
143 144 6.330278 GCCTCGGCTATTTAATTCTTTTGTT 58.670 36.000 0.00 0.00 38.26 2.83
144 145 5.891451 GCCTCGGCTATTTAATTCTTTTGT 58.109 37.500 0.00 0.00 38.26 2.83
160 161 1.589716 ATGCAGTTGAAAGCCTCGGC 61.590 55.000 0.00 0.00 42.33 5.54
161 162 1.737838 TATGCAGTTGAAAGCCTCGG 58.262 50.000 0.00 0.00 0.00 4.63
162 163 3.829886 TTTATGCAGTTGAAAGCCTCG 57.170 42.857 0.00 0.00 0.00 4.63
163 164 4.488879 CCTTTTATGCAGTTGAAAGCCTC 58.511 43.478 0.00 0.00 0.00 4.70
164 165 3.259123 CCCTTTTATGCAGTTGAAAGCCT 59.741 43.478 0.00 0.00 0.00 4.58
165 166 3.258123 TCCCTTTTATGCAGTTGAAAGCC 59.742 43.478 0.00 0.00 0.00 4.35
166 167 4.519540 TCCCTTTTATGCAGTTGAAAGC 57.480 40.909 0.00 0.00 0.00 3.51
167 168 6.029346 ACATCCCTTTTATGCAGTTGAAAG 57.971 37.500 0.00 0.00 0.00 2.62
168 169 5.538053 TGACATCCCTTTTATGCAGTTGAAA 59.462 36.000 0.00 0.00 0.00 2.69
169 170 5.076182 TGACATCCCTTTTATGCAGTTGAA 58.924 37.500 0.00 0.00 0.00 2.69
170 171 4.661222 TGACATCCCTTTTATGCAGTTGA 58.339 39.130 0.00 0.00 0.00 3.18
171 172 5.389859 TTGACATCCCTTTTATGCAGTTG 57.610 39.130 0.00 0.00 0.00 3.16
172 173 6.418057 TTTTGACATCCCTTTTATGCAGTT 57.582 33.333 0.00 0.00 0.00 3.16
173 174 6.610075 ATTTTGACATCCCTTTTATGCAGT 57.390 33.333 0.00 0.00 0.00 4.40
174 175 9.603921 AATTATTTTGACATCCCTTTTATGCAG 57.396 29.630 0.00 0.00 0.00 4.41
175 176 9.956640 AAATTATTTTGACATCCCTTTTATGCA 57.043 25.926 0.00 0.00 0.00 3.96
205 206 9.967346 CGTCTTATATTTAGAAACAGAGGATGA 57.033 33.333 0.00 0.00 0.00 2.92
206 207 9.751542 ACGTCTTATATTTAGAAACAGAGGATG 57.248 33.333 0.00 0.00 0.00 3.51
214 215 9.968743 CCACTGAAACGTCTTATATTTAGAAAC 57.031 33.333 0.00 0.00 0.00 2.78
215 216 9.715121 ACCACTGAAACGTCTTATATTTAGAAA 57.285 29.630 0.00 0.00 0.00 2.52
216 217 9.715121 AACCACTGAAACGTCTTATATTTAGAA 57.285 29.630 0.00 0.00 0.00 2.10
217 218 9.715121 AAACCACTGAAACGTCTTATATTTAGA 57.285 29.630 0.00 0.00 0.00 2.10
225 226 8.776470 CCTAAATTAAACCACTGAAACGTCTTA 58.224 33.333 0.00 0.00 0.00 2.10
226 227 7.499895 TCCTAAATTAAACCACTGAAACGTCTT 59.500 33.333 0.00 0.00 0.00 3.01
227 228 6.993902 TCCTAAATTAAACCACTGAAACGTCT 59.006 34.615 0.00 0.00 0.00 4.18
228 229 7.193377 TCCTAAATTAAACCACTGAAACGTC 57.807 36.000 0.00 0.00 0.00 4.34
229 230 7.499895 TCTTCCTAAATTAAACCACTGAAACGT 59.500 33.333 0.00 0.00 0.00 3.99
230 231 7.867752 TCTTCCTAAATTAAACCACTGAAACG 58.132 34.615 0.00 0.00 0.00 3.60
231 232 9.063615 TCTCTTCCTAAATTAAACCACTGAAAC 57.936 33.333 0.00 0.00 0.00 2.78
232 233 9.807921 ATCTCTTCCTAAATTAAACCACTGAAA 57.192 29.630 0.00 0.00 0.00 2.69
233 234 9.231297 CATCTCTTCCTAAATTAAACCACTGAA 57.769 33.333 0.00 0.00 0.00 3.02
234 235 8.383175 ACATCTCTTCCTAAATTAAACCACTGA 58.617 33.333 0.00 0.00 0.00 3.41
235 236 8.567285 ACATCTCTTCCTAAATTAAACCACTG 57.433 34.615 0.00 0.00 0.00 3.66
236 237 9.892130 CTACATCTCTTCCTAAATTAAACCACT 57.108 33.333 0.00 0.00 0.00 4.00
237 238 8.613482 GCTACATCTCTTCCTAAATTAAACCAC 58.387 37.037 0.00 0.00 0.00 4.16
238 239 8.325787 TGCTACATCTCTTCCTAAATTAAACCA 58.674 33.333 0.00 0.00 0.00 3.67
239 240 8.732746 TGCTACATCTCTTCCTAAATTAAACC 57.267 34.615 0.00 0.00 0.00 3.27
240 241 9.384764 ACTGCTACATCTCTTCCTAAATTAAAC 57.615 33.333 0.00 0.00 0.00 2.01
241 242 9.959721 AACTGCTACATCTCTTCCTAAATTAAA 57.040 29.630 0.00 0.00 0.00 1.52
242 243 9.601217 GAACTGCTACATCTCTTCCTAAATTAA 57.399 33.333 0.00 0.00 0.00 1.40
243 244 8.982723 AGAACTGCTACATCTCTTCCTAAATTA 58.017 33.333 0.00 0.00 0.00 1.40
244 245 7.856415 AGAACTGCTACATCTCTTCCTAAATT 58.144 34.615 0.00 0.00 0.00 1.82
245 246 7.430760 AGAACTGCTACATCTCTTCCTAAAT 57.569 36.000 0.00 0.00 0.00 1.40
246 247 6.859112 AGAACTGCTACATCTCTTCCTAAA 57.141 37.500 0.00 0.00 0.00 1.85
247 248 6.859112 AAGAACTGCTACATCTCTTCCTAA 57.141 37.500 0.00 0.00 0.00 2.69
248 249 6.458232 GAAGAACTGCTACATCTCTTCCTA 57.542 41.667 0.00 0.00 37.23 2.94
249 250 5.337578 GAAGAACTGCTACATCTCTTCCT 57.662 43.478 0.00 0.00 37.23 3.36
251 252 4.109050 CGGAAGAACTGCTACATCTCTTC 58.891 47.826 8.97 8.97 40.74 2.87
252 253 3.511934 ACGGAAGAACTGCTACATCTCTT 59.488 43.478 0.00 0.00 0.00 2.85
253 254 3.093057 ACGGAAGAACTGCTACATCTCT 58.907 45.455 0.00 0.00 0.00 3.10
254 255 3.512033 ACGGAAGAACTGCTACATCTC 57.488 47.619 0.00 0.00 0.00 2.75
255 256 5.127194 TCAATACGGAAGAACTGCTACATCT 59.873 40.000 0.00 0.00 0.00 2.90
256 257 5.232414 GTCAATACGGAAGAACTGCTACATC 59.768 44.000 0.00 0.00 0.00 3.06
257 258 5.109903 GTCAATACGGAAGAACTGCTACAT 58.890 41.667 0.00 0.00 0.00 2.29
258 259 4.021807 TGTCAATACGGAAGAACTGCTACA 60.022 41.667 0.00 0.00 0.00 2.74
259 260 4.491676 TGTCAATACGGAAGAACTGCTAC 58.508 43.478 0.00 0.00 0.00 3.58
260 261 4.794278 TGTCAATACGGAAGAACTGCTA 57.206 40.909 0.00 0.00 0.00 3.49
261 262 3.678056 TGTCAATACGGAAGAACTGCT 57.322 42.857 0.00 0.00 0.00 4.24
262 263 3.063997 CCATGTCAATACGGAAGAACTGC 59.936 47.826 0.00 0.00 0.00 4.40
263 264 4.253685 ACCATGTCAATACGGAAGAACTG 58.746 43.478 0.00 0.00 0.00 3.16
264 265 4.553330 ACCATGTCAATACGGAAGAACT 57.447 40.909 0.00 0.00 0.00 3.01
265 266 4.693566 TCAACCATGTCAATACGGAAGAAC 59.306 41.667 0.00 0.00 0.00 3.01
266 267 4.900684 TCAACCATGTCAATACGGAAGAA 58.099 39.130 0.00 0.00 0.00 2.52
267 268 4.545208 TCAACCATGTCAATACGGAAGA 57.455 40.909 0.00 0.00 0.00 2.87
268 269 4.035558 CCATCAACCATGTCAATACGGAAG 59.964 45.833 0.00 0.00 0.00 3.46
269 270 3.944650 CCATCAACCATGTCAATACGGAA 59.055 43.478 0.00 0.00 0.00 4.30
270 271 3.054728 ACCATCAACCATGTCAATACGGA 60.055 43.478 0.00 0.00 0.00 4.69
271 272 3.278574 ACCATCAACCATGTCAATACGG 58.721 45.455 0.00 0.00 0.00 4.02
272 273 3.938334 TGACCATCAACCATGTCAATACG 59.062 43.478 0.00 0.00 0.00 3.06
273 274 5.895636 TTGACCATCAACCATGTCAATAC 57.104 39.130 0.00 0.00 32.30 1.89
274 275 8.631797 CATTATTGACCATCAACCATGTCAATA 58.368 33.333 15.95 15.95 39.45 1.90
281 282 5.833131 GGTACCATTATTGACCATCAACCAT 59.167 40.000 7.15 0.00 39.45 3.55
338 339 1.457643 TCGGCCACCTGAGGATAGG 60.458 63.158 4.99 5.18 43.71 2.57
359 360 3.775654 CGGAGGAGTCACCAGGCC 61.776 72.222 0.00 0.00 42.04 5.19
364 365 3.202548 TGGATACGGAGGAGTCACC 57.797 57.895 0.00 0.00 42.51 4.02
378 379 1.078848 GTGCCTTCTCACGCTGGAT 60.079 57.895 0.00 0.00 0.00 3.41
391 392 4.567716 GCTACAAGCTACAGGTGTGCCT 62.568 54.545 0.00 0.00 41.53 4.75
396 397 2.076863 GTTGGCTACAAGCTACAGGTG 58.923 52.381 0.00 0.00 41.99 4.00
425 428 3.963129 AGGGCGAACTTGAATTGGATAA 58.037 40.909 0.00 0.00 0.00 1.75
466 479 0.458889 CCAATGCCAAATGCCACTCG 60.459 55.000 0.00 0.00 40.16 4.18
477 490 1.678635 GCCAGTAGTGCCAATGCCA 60.679 57.895 0.00 0.00 36.33 4.92
478 491 1.678635 TGCCAGTAGTGCCAATGCC 60.679 57.895 0.00 0.00 36.33 4.40
479 492 1.508088 GTGCCAGTAGTGCCAATGC 59.492 57.895 0.00 0.00 38.26 3.56
480 493 1.796151 CGTGCCAGTAGTGCCAATG 59.204 57.895 0.00 0.00 0.00 2.82
481 494 2.040544 GCGTGCCAGTAGTGCCAAT 61.041 57.895 0.00 0.00 0.00 3.16
482 495 2.668212 GCGTGCCAGTAGTGCCAA 60.668 61.111 0.00 0.00 0.00 4.52
483 496 4.697756 GGCGTGCCAGTAGTGCCA 62.698 66.667 5.89 0.00 45.06 4.92
505 518 5.047590 TCCTTGTATACACGAGAAGCAAAGA 60.048 40.000 10.76 0.00 38.31 2.52
509 522 4.381612 CCTTCCTTGTATACACGAGAAGCA 60.382 45.833 22.13 2.55 38.31 3.91
510 523 4.113354 CCTTCCTTGTATACACGAGAAGC 58.887 47.826 22.13 0.00 38.31 3.86
511 524 5.578005 TCCTTCCTTGTATACACGAGAAG 57.422 43.478 21.29 21.29 38.31 2.85
513 526 5.988310 TTTCCTTCCTTGTATACACGAGA 57.012 39.130 10.76 3.12 38.31 4.04
514 527 5.061808 CGTTTTCCTTCCTTGTATACACGAG 59.938 44.000 10.76 4.42 36.10 4.18
516 529 4.092383 CCGTTTTCCTTCCTTGTATACACG 59.908 45.833 4.68 3.42 0.00 4.49
615 2450 1.668419 CCGGGTTCAGGATTGTCATC 58.332 55.000 0.00 0.00 0.00 2.92
618 2453 1.749258 GGCCGGGTTCAGGATTGTC 60.749 63.158 2.18 0.00 0.00 3.18
641 2476 1.073548 TTTGGTTAGGGGTCGGCAC 59.926 57.895 0.00 0.00 0.00 5.01
642 2477 1.073548 GTTTGGTTAGGGGTCGGCA 59.926 57.895 0.00 0.00 0.00 5.69
643 2478 0.675837 GAGTTTGGTTAGGGGTCGGC 60.676 60.000 0.00 0.00 0.00 5.54
644 2479 0.390735 CGAGTTTGGTTAGGGGTCGG 60.391 60.000 0.00 0.00 0.00 4.79
645 2480 1.017701 GCGAGTTTGGTTAGGGGTCG 61.018 60.000 0.00 0.00 0.00 4.79
646 2481 0.675837 GGCGAGTTTGGTTAGGGGTC 60.676 60.000 0.00 0.00 0.00 4.46
647 2482 1.377612 GGCGAGTTTGGTTAGGGGT 59.622 57.895 0.00 0.00 0.00 4.95
648 2483 1.378119 GGGCGAGTTTGGTTAGGGG 60.378 63.158 0.00 0.00 0.00 4.79
649 2484 0.034477 ATGGGCGAGTTTGGTTAGGG 60.034 55.000 0.00 0.00 0.00 3.53
650 2485 1.379527 GATGGGCGAGTTTGGTTAGG 58.620 55.000 0.00 0.00 0.00 2.69
651 2486 1.065418 AGGATGGGCGAGTTTGGTTAG 60.065 52.381 0.00 0.00 0.00 2.34
652 2487 0.988832 AGGATGGGCGAGTTTGGTTA 59.011 50.000 0.00 0.00 0.00 2.85
653 2488 0.988832 TAGGATGGGCGAGTTTGGTT 59.011 50.000 0.00 0.00 0.00 3.67
654 2489 0.252197 GTAGGATGGGCGAGTTTGGT 59.748 55.000 0.00 0.00 0.00 3.67
655 2490 0.251916 TGTAGGATGGGCGAGTTTGG 59.748 55.000 0.00 0.00 0.00 3.28
656 2491 1.066143 ACTGTAGGATGGGCGAGTTTG 60.066 52.381 0.00 0.00 0.00 2.93
657 2492 1.276622 ACTGTAGGATGGGCGAGTTT 58.723 50.000 0.00 0.00 0.00 2.66
658 2493 1.207329 GAACTGTAGGATGGGCGAGTT 59.793 52.381 0.00 0.00 0.00 3.01
659 2494 0.824759 GAACTGTAGGATGGGCGAGT 59.175 55.000 0.00 0.00 0.00 4.18
660 2495 0.105039 GGAACTGTAGGATGGGCGAG 59.895 60.000 0.00 0.00 0.00 5.03
661 2496 0.616395 TGGAACTGTAGGATGGGCGA 60.616 55.000 0.00 0.00 0.00 5.54
662 2497 0.179073 CTGGAACTGTAGGATGGGCG 60.179 60.000 0.00 0.00 0.00 6.13
663 2498 0.912486 ACTGGAACTGTAGGATGGGC 59.088 55.000 0.00 0.00 39.19 5.36
664 2499 2.418746 CGAACTGGAACTGTAGGATGGG 60.419 54.545 0.00 0.00 40.38 4.00
665 2500 2.233922 ACGAACTGGAACTGTAGGATGG 59.766 50.000 0.00 0.00 40.38 3.51
666 2501 3.594603 ACGAACTGGAACTGTAGGATG 57.405 47.619 0.00 0.00 40.38 3.51
667 2502 3.833070 AGAACGAACTGGAACTGTAGGAT 59.167 43.478 0.00 0.00 40.38 3.24
668 2503 3.228453 AGAACGAACTGGAACTGTAGGA 58.772 45.455 0.00 0.00 40.38 2.94
669 2504 3.576648 GAGAACGAACTGGAACTGTAGG 58.423 50.000 0.00 0.00 40.38 3.18
670 2505 3.005472 TGGAGAACGAACTGGAACTGTAG 59.995 47.826 0.00 0.00 40.38 2.74
671 2506 2.960384 TGGAGAACGAACTGGAACTGTA 59.040 45.455 0.00 0.00 40.38 2.74
672 2507 1.760613 TGGAGAACGAACTGGAACTGT 59.239 47.619 0.00 0.00 44.05 3.55
673 2508 2.526304 TGGAGAACGAACTGGAACTG 57.474 50.000 0.00 0.00 0.00 3.16
674 2509 2.028020 GGATGGAGAACGAACTGGAACT 60.028 50.000 0.00 0.00 0.00 3.01
675 2510 2.289444 TGGATGGAGAACGAACTGGAAC 60.289 50.000 0.00 0.00 0.00 3.62
676 2511 1.974957 TGGATGGAGAACGAACTGGAA 59.025 47.619 0.00 0.00 0.00 3.53
686 2521 0.036388 GACTTGCCGTGGATGGAGAA 60.036 55.000 0.00 0.00 0.00 2.87
690 2525 2.819595 CCGACTTGCCGTGGATGG 60.820 66.667 0.00 0.00 0.00 3.51
721 2556 0.897621 GAACCCCAAGCCCAAAGATG 59.102 55.000 0.00 0.00 0.00 2.90
723 2558 1.228429 CGAACCCCAAGCCCAAAGA 60.228 57.895 0.00 0.00 0.00 2.52
727 2562 3.897122 AAGCGAACCCCAAGCCCA 61.897 61.111 0.00 0.00 0.00 5.36
729 2564 4.056125 GCAAGCGAACCCCAAGCC 62.056 66.667 0.00 0.00 0.00 4.35
733 2568 4.344865 GGGAGCAAGCGAACCCCA 62.345 66.667 11.76 0.00 37.04 4.96
738 2574 4.697756 CCGGTGGGAGCAAGCGAA 62.698 66.667 0.00 0.00 40.84 4.70
937 2802 0.033109 GGGTTCAGGGGATTTGGAGG 60.033 60.000 0.00 0.00 0.00 4.30
1431 3362 1.372087 GCCACCTCTTTCCATCTGCG 61.372 60.000 0.00 0.00 0.00 5.18
1466 3397 5.005094 ACTCTACGATTATCCTAGTGAGGC 58.995 45.833 0.00 0.00 43.40 4.70
1499 3445 5.883115 TGAAACCAGAATCACACTACAAACA 59.117 36.000 0.00 0.00 0.00 2.83
1676 4073 1.062002 CTGCCTGTAATGTTAACGCGG 59.938 52.381 12.47 0.00 0.00 6.46
1701 4098 7.441890 TCTAGTTATCGATCTGAATGACTCC 57.558 40.000 0.00 0.00 0.00 3.85
2125 4535 3.572632 ATGAGACAATGGTCCATGGAG 57.427 47.619 16.81 5.43 45.48 3.86
2129 4539 3.912496 TCGAATGAGACAATGGTCCAT 57.088 42.857 0.00 0.00 45.48 3.41
2158 4573 1.972872 CAGTCTTGACAAAGCCCTGT 58.027 50.000 3.49 0.00 32.11 4.00
2261 4676 9.719355 TCTCACTTTTCACTAAGCATAATAACA 57.281 29.630 0.00 0.00 0.00 2.41
2265 4680 9.236006 ACATTCTCACTTTTCACTAAGCATAAT 57.764 29.630 0.00 0.00 0.00 1.28
2268 4683 8.798859 ATACATTCTCACTTTTCACTAAGCAT 57.201 30.769 0.00 0.00 0.00 3.79
2336 4754 9.383519 TGAAACTGAATCTCATTTAGGTACATC 57.616 33.333 0.00 0.00 30.82 3.06
2337 4755 9.739276 TTGAAACTGAATCTCATTTAGGTACAT 57.261 29.630 0.00 0.00 30.82 2.29
2338 4756 9.567776 TTTGAAACTGAATCTCATTTAGGTACA 57.432 29.630 0.00 0.00 30.82 2.90
2382 4917 5.276461 TCTCACTTTTCACTAAGCAGACA 57.724 39.130 0.00 0.00 0.00 3.41
2448 4983 4.879104 ATTTTGTGGCACAACATGTTTG 57.121 36.364 31.20 11.67 44.16 2.93
2449 4984 5.163673 GGAAATTTTGTGGCACAACATGTTT 60.164 36.000 31.20 25.08 44.16 2.83
2488 5023 5.181748 CAGCACTTAAAAGGCATCTCTAGT 58.818 41.667 0.00 0.00 0.00 2.57
2489 5024 5.064452 CACAGCACTTAAAAGGCATCTCTAG 59.936 44.000 0.00 0.00 0.00 2.43
2490 5025 4.937620 CACAGCACTTAAAAGGCATCTCTA 59.062 41.667 0.00 0.00 0.00 2.43
2491 5026 3.755378 CACAGCACTTAAAAGGCATCTCT 59.245 43.478 0.00 0.00 0.00 3.10
2492 5027 3.503748 ACACAGCACTTAAAAGGCATCTC 59.496 43.478 0.00 0.00 0.00 2.75
2493 5028 3.254166 CACACAGCACTTAAAAGGCATCT 59.746 43.478 0.00 0.00 0.00 2.90
2494 5029 3.253188 TCACACAGCACTTAAAAGGCATC 59.747 43.478 0.00 0.00 0.00 3.91
2495 5030 3.221771 TCACACAGCACTTAAAAGGCAT 58.778 40.909 0.00 0.00 0.00 4.40
2510 5045 4.650734 TGATGCAACTTAAGGATCACACA 58.349 39.130 7.53 3.43 38.64 3.72
2654 5189 1.539388 TGAAGCAAGGCATTTACACGG 59.461 47.619 0.00 0.00 0.00 4.94
2659 5194 3.439154 TGGGAATGAAGCAAGGCATTTA 58.561 40.909 0.00 0.00 35.05 1.40
2661 5196 1.941377 TGGGAATGAAGCAAGGCATT 58.059 45.000 0.00 0.00 37.43 3.56
2683 5218 2.651382 AAGTGGTGGGGTTTCTGTAC 57.349 50.000 0.00 0.00 0.00 2.90
2736 5271 7.604549 TGTAACACCGTCATCATCTTTTAGTA 58.395 34.615 0.00 0.00 0.00 1.82
2754 5289 8.866956 ACTACTACAGCGAAATTTATGTAACAC 58.133 33.333 10.08 0.00 0.00 3.32
2925 5464 4.734398 TGTCAGTTCAACAGGCAAAATT 57.266 36.364 0.00 0.00 0.00 1.82
2973 5512 1.583495 GGCCAGGAACAAAGTACCGC 61.583 60.000 0.00 0.00 0.00 5.68
2975 5514 0.404426 AGGGCCAGGAACAAAGTACC 59.596 55.000 6.18 0.00 0.00 3.34
3002 5541 9.295825 TGCAAAAATTAAGAGGAGAAATCAGTA 57.704 29.630 0.00 0.00 0.00 2.74
3011 5550 5.613358 ACGACTGCAAAAATTAAGAGGAG 57.387 39.130 0.00 0.00 0.00 3.69
3014 5553 7.072177 TCCATACGACTGCAAAAATTAAGAG 57.928 36.000 0.00 0.00 0.00 2.85
3032 5571 5.067674 TGCATAGCCAACTTTGATTCCATAC 59.932 40.000 0.00 0.00 0.00 2.39
3086 5625 1.072505 GCCACCTTGGGAAGACGAA 59.927 57.895 0.00 0.00 38.19 3.85
3134 5673 2.627863 TGCCATGCGATTTTGTACAC 57.372 45.000 0.00 0.00 0.00 2.90
3252 5799 7.809806 GGAAATGAACTGAACCTATTTTGACTG 59.190 37.037 0.00 0.00 0.00 3.51
3321 5873 3.517602 TCGTGAATCCTAAATGACACGG 58.482 45.455 15.30 0.77 46.68 4.94
3415 5972 4.887655 ACTTTAAAGTCTGTGGACCCAAAG 59.112 41.667 15.22 0.00 43.05 2.77
3425 5982 9.174166 ACAGTGTTCAATAACTTTAAAGTCTGT 57.826 29.630 20.78 20.12 38.57 3.41
3457 6014 3.181513 GCACACATCTGCAACTACTCATG 60.182 47.826 0.00 0.00 37.11 3.07
3498 6057 6.820656 CACAAGCTCAAGTGTCCTTATAGAAT 59.179 38.462 5.91 0.00 0.00 2.40
3537 6096 3.438087 GGATGGTTCATGTTCAGTGAGTG 59.562 47.826 0.00 0.00 0.00 3.51
3563 6122 8.922058 TCATCCGATTAAACTTAACTGAGTAC 57.078 34.615 0.00 0.00 0.00 2.73
3566 6125 7.278868 AGCTTCATCCGATTAAACTTAACTGAG 59.721 37.037 0.00 0.00 0.00 3.35
3567 6126 7.103641 AGCTTCATCCGATTAAACTTAACTGA 58.896 34.615 0.00 0.00 0.00 3.41
3568 6127 7.308782 AGCTTCATCCGATTAAACTTAACTG 57.691 36.000 0.00 0.00 0.00 3.16
3569 6128 7.390718 ACAAGCTTCATCCGATTAAACTTAACT 59.609 33.333 0.00 0.00 0.00 2.24
3573 6132 6.381801 CAACAAGCTTCATCCGATTAAACTT 58.618 36.000 0.00 0.00 0.00 2.66
3705 6268 8.406297 AGGAAAACAAGTCAATTACAAGAGAAC 58.594 33.333 0.00 0.00 0.00 3.01
3707 6270 7.993183 AGAGGAAAACAAGTCAATTACAAGAGA 59.007 33.333 0.00 0.00 0.00 3.10
3708 6271 8.159344 AGAGGAAAACAAGTCAATTACAAGAG 57.841 34.615 0.00 0.00 0.00 2.85
3709 6272 8.519799 AAGAGGAAAACAAGTCAATTACAAGA 57.480 30.769 0.00 0.00 0.00 3.02
3710 6273 9.586435 AAAAGAGGAAAACAAGTCAATTACAAG 57.414 29.630 0.00 0.00 0.00 3.16
3908 6483 9.280456 ACCTTATAAACCTGAAGAGGAGAAATA 57.720 33.333 0.00 0.00 42.93 1.40
3909 6484 8.164057 ACCTTATAAACCTGAAGAGGAGAAAT 57.836 34.615 0.00 0.00 42.93 2.17
3921 6606 7.417456 GGCCTATTTCCAAACCTTATAAACCTG 60.417 40.741 0.00 0.00 0.00 4.00
3922 6607 6.610020 GGCCTATTTCCAAACCTTATAAACCT 59.390 38.462 0.00 0.00 0.00 3.50
3935 6620 3.517500 GGAATGGTTTGGCCTATTTCCAA 59.482 43.478 3.32 0.00 41.47 3.53
3941 6626 1.288932 AGCTGGAATGGTTTGGCCTAT 59.711 47.619 3.32 0.00 38.35 2.57
3979 6664 2.290367 CTCGGTTTCTTGTGTTGCATCA 59.710 45.455 0.00 0.00 0.00 3.07
4021 6706 8.121305 AGATACATTTATTTCAGCAACCAACA 57.879 30.769 0.00 0.00 0.00 3.33
4022 6707 9.722056 CTAGATACATTTATTTCAGCAACCAAC 57.278 33.333 0.00 0.00 0.00 3.77
4023 6708 9.679661 TCTAGATACATTTATTTCAGCAACCAA 57.320 29.630 0.00 0.00 0.00 3.67
4024 6709 9.109393 GTCTAGATACATTTATTTCAGCAACCA 57.891 33.333 0.00 0.00 0.00 3.67
4025 6710 8.276325 CGTCTAGATACATTTATTTCAGCAACC 58.724 37.037 0.00 0.00 0.00 3.77
4074 6768 2.223876 CCATGCTAATTGCCGCTCAAAT 60.224 45.455 0.00 0.00 42.00 2.32
4083 6777 1.334869 CTTCCGGTCCATGCTAATTGC 59.665 52.381 0.00 0.00 43.25 3.56
4088 6782 0.325296 ACTCCTTCCGGTCCATGCTA 60.325 55.000 0.00 0.00 0.00 3.49
4090 6784 0.105039 CTACTCCTTCCGGTCCATGC 59.895 60.000 0.00 0.00 0.00 4.06
4091 6785 0.753262 CCTACTCCTTCCGGTCCATG 59.247 60.000 0.00 0.00 0.00 3.66
4099 6793 1.393487 GGCCGTCTCCTACTCCTTCC 61.393 65.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.