AutoCloner

Multiple sequence alignment - TraesCS2D01G330800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G330800	chr2D	100.000	2414	0	0	1	2414	423361723	423359310	0.000000e+00	4458
1	TraesCS2D01G330800	chr2D	95.318	1794	73	8	32	1822	215733139	215731354	0.000000e+00	2837
2	TraesCS2D01G330800	chr2D	91.625	1982	111	23	21	1980	517399807	517397859	0.000000e+00	2689
3	TraesCS2D01G330800	chr2D	94.823	1468	61	9	3	1468	534644474	534643020	0.000000e+00	2276
4	TraesCS2D01G330800	chr2D	94.769	497	26	0	1821	2317	116415192	116415688	0.000000e+00	774
5	TraesCS2D01G330800	chr2D	92.986	499	35	0	1822	2320	196650441	196649943	0.000000e+00	728
6	TraesCS2D01G330800	chr3D	94.305	2318	100	12	2	2315	437449745	437447456	0.000000e+00	3520
7	TraesCS2D01G330800	chr3D	94.355	496	28	0	1822	2317	451788732	451788237	0.000000e+00	761
8	TraesCS2D01G330800	chr7D	94.049	2319	96	18	1	2315	85641272	85643552	0.000000e+00	3480
9	TraesCS2D01G330800	chr7D	94.141	495	29	0	1823	2317	585203910	585203416	0.000000e+00	754
10	TraesCS2D01G330800	chr6D	93.486	2318	124	11	3	2317	64324701	64322408	0.000000e+00	3419
11	TraesCS2D01G330800	chr6D	98.990	99	1	0	2316	2414	107790385	107790483	6.860000e-41	178
12	TraesCS2D01G330800	chr6D	98.990	99	1	0	2316	2414	451744914	451744816	6.860000e-41	178
13	TraesCS2D01G330800	chr6D	98.990	99	1	0	2316	2414	457655107	457655009	6.860000e-41	178
14	TraesCS2D01G330800	chr5D	93.161	2325	106	13	1	2324	317933344	317931072	0.000000e+00	3363
15	TraesCS2D01G330800	chr5D	94.405	1823	78	13	2	1822	311825278	311827078	0.000000e+00	2780
16	TraesCS2D01G330800	chr5D	94.545	495	27	0	1821	2315	416448333	416447839	0.000000e+00	765
17	TraesCS2D01G330800	chr4D	95.060	1822	58	16	1	1822	253646360	253648149	0.000000e+00	2837
18	TraesCS2D01G330800	chr4D	94.077	1165	43	14	1	1146	30247135	30248292	0.000000e+00	1746
19	TraesCS2D01G330800	chr4D	93.360	497	28	3	1821	2317	253648186	253648677	0.000000e+00	730
20	TraesCS2D01G330800	chr6B	92.807	1724	109	10	1	1721	137852367	137850656	0.000000e+00	2483
21	TraesCS2D01G330800	chr6B	93.561	497	29	2	1822	2315	144743916	144744412	0.000000e+00	737
22	TraesCS2D01G330800	chr6B	89.292	551	47	5	1767	2317	137850675	137850137	0.000000e+00	680
23	TraesCS2D01G330800	chr7A	100.000	99	0	0	2316	2414	725168200	725168102	1.470000e-42	183
24	TraesCS2D01G330800	chr2A	100.000	99	0	0	2316	2414	672764840	672764742	1.470000e-42	183
25	TraesCS2D01G330800	chr1A	100.000	99	0	0	2316	2414	556968131	556968033	1.470000e-42	183
26	TraesCS2D01G330800	chr5A	99.000	100	1	0	2315	2414	352476430	352476331	1.910000e-41	180
27	TraesCS2D01G330800	chrUn	98.990	99	1	0	2316	2414	28778091	28778189	6.860000e-41	178
28	TraesCS2D01G330800	chrUn	98.990	99	1	0	2316	2414	310893348	310893446	6.860000e-41	178

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G330800	chr2D	423359310	423361723	2413	True	4458.0	4458	100.0000	1	2414	1	chr2D.!!$R3	2413
1	TraesCS2D01G330800	chr2D	215731354	215733139	1785	True	2837.0	2837	95.3180	32	1822	1	chr2D.!!$R2	1790
2	TraesCS2D01G330800	chr2D	517397859	517399807	1948	True	2689.0	2689	91.6250	21	1980	1	chr2D.!!$R4	1959
3	TraesCS2D01G330800	chr2D	534643020	534644474	1454	True	2276.0	2276	94.8230	3	1468	1	chr2D.!!$R5	1465
4	TraesCS2D01G330800	chr3D	437447456	437449745	2289	True	3520.0	3520	94.3050	2	2315	1	chr3D.!!$R1	2313
5	TraesCS2D01G330800	chr7D	85641272	85643552	2280	False	3480.0	3480	94.0490	1	2315	1	chr7D.!!$F1	2314
6	TraesCS2D01G330800	chr6D	64322408	64324701	2293	True	3419.0	3419	93.4860	3	2317	1	chr6D.!!$R1	2314
7	TraesCS2D01G330800	chr5D	317931072	317933344	2272	True	3363.0	3363	93.1610	1	2324	1	chr5D.!!$R1	2323
8	TraesCS2D01G330800	chr5D	311825278	311827078	1800	False	2780.0	2780	94.4050	2	1822	1	chr5D.!!$F1	1820
9	TraesCS2D01G330800	chr4D	253646360	253648677	2317	False	1783.5	2837	94.2100	1	2317	2	chr4D.!!$F2	2316
10	TraesCS2D01G330800	chr4D	30247135	30248292	1157	False	1746.0	1746	94.0770	1	1146	1	chr4D.!!$F1	1145
11	TraesCS2D01G330800	chr6B	137850137	137852367	2230	True	1581.5	2483	91.0495	1	2317	2	chr6B.!!$R1	2316

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
948	1032	1.138568	CTCCCATCCTCTCTGCCATT	58.861	55.0	0.0	0.0	0.0	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2371	2524	2.027745	TCAAGGCATGTGAAGAGGAGAC	60.028	50.0	0.0	0.0	0.0	3.36	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
59	61	2.786495	CGATCGTGCCAGCTAGGGT	61.786	63.158	7.03	0.00	38.09	4.34
379	387	1.788229	TGGATCATAAGGACGGCTCA	58.212	50.000	0.00	0.00	0.00	4.26
399	407	1.220749	CATCGTTGGATCGTGGGGT	59.779	57.895	0.00	0.00	0.00	4.95
432	440	2.017049	GCGATCCTATTGGTTGTGCTT	58.983	47.619	0.00	0.00	34.23	3.91
443	451	4.631247	TGTGCTTGGCTGCTCGCT	62.631	61.111	0.00	0.00	39.13	4.93
459	467	2.126307	CTCACCACTGACTCCGCG	60.126	66.667	0.00	0.00	0.00	6.46
460	468	2.596338	TCACCACTGACTCCGCGA	60.596	61.111	8.23	0.00	0.00	5.87
461	469	2.142357	CTCACCACTGACTCCGCGAA	62.142	60.000	8.23	0.00	0.00	4.70
462	470	1.300620	CACCACTGACTCCGCGAAA	60.301	57.895	8.23	0.00	0.00	3.46
844	924	2.215196	TGAAAACGGGCTACTTCACAC	58.785	47.619	0.00	0.00	0.00	3.82
948	1032	1.138568	CTCCCATCCTCTCTGCCATT	58.861	55.000	0.00	0.00	0.00	3.16
965	1049	2.301009	CCATTTGCCCTTCTTGCTCTTT	59.699	45.455	0.00	0.00	0.00	2.52
1354	1442	1.278127	AGTACACCAACATCTTCCCCG	59.722	52.381	0.00	0.00	0.00	5.73
1629	1743	5.923114	CCTAGATTCAACTATGTGATCGTGG	59.077	44.000	0.00	0.00	0.00	4.94
1642	1756	2.502130	TGATCGTGGTATGGGCTTGTTA	59.498	45.455	0.00	0.00	0.00	2.41
1661	1775	6.553953	TGTTAGCCCTATCTACATGTTTGA	57.446	37.500	2.30	3.47	0.00	2.69
1825	1977	4.752661	TGTCATAGCAAAACGGGTAAAC	57.247	40.909	0.00	0.00	0.00	2.01
2114	2266	2.592287	GGCCCAACGAAACCACGA	60.592	61.111	0.00	0.00	37.03	4.35
2318	2471	5.011023	GGGCATAGATGTAAAAATCCCTTGG	59.989	44.000	0.00	0.00	0.00	3.61
2319	2472	5.833131	GGCATAGATGTAAAAATCCCTTGGA	59.167	40.000	0.00	0.00	35.55	3.53
2343	2496	8.403606	GATATAATCCAACGTAATAACTCCGG	57.596	38.462	0.00	0.00	0.00	5.14
2344	2497	4.741321	AATCCAACGTAATAACTCCGGA	57.259	40.909	2.93	2.93	0.00	5.14
2345	2498	3.788333	TCCAACGTAATAACTCCGGAG	57.212	47.619	30.11	30.11	0.00	4.63
2346	2499	3.091545	TCCAACGTAATAACTCCGGAGT	58.908	45.455	31.69	31.69	44.94	3.85
2357	2510	3.790089	ACTCCGGAGTTCCTCAATTTT	57.210	42.857	31.69	3.92	38.83	1.82
2358	2511	3.676093	ACTCCGGAGTTCCTCAATTTTC	58.324	45.455	31.69	0.00	38.83	2.29
2359	2512	3.328050	ACTCCGGAGTTCCTCAATTTTCT	59.672	43.478	31.69	3.20	38.83	2.52
2360	2513	3.674997	TCCGGAGTTCCTCAATTTTCTG	58.325	45.455	0.00	0.00	31.08	3.02
2361	2514	3.326588	TCCGGAGTTCCTCAATTTTCTGA	59.673	43.478	0.00	0.00	31.08	3.27
2362	2515	3.437049	CCGGAGTTCCTCAATTTTCTGAC	59.563	47.826	0.00	0.00	31.08	3.51
2363	2516	4.065088	CGGAGTTCCTCAATTTTCTGACA	58.935	43.478	0.00	0.00	31.08	3.58
2364	2517	4.153117	CGGAGTTCCTCAATTTTCTGACAG	59.847	45.833	0.00	0.00	31.08	3.51
2365	2518	5.308825	GGAGTTCCTCAATTTTCTGACAGA	58.691	41.667	0.00	0.00	31.08	3.41
2366	2519	5.942826	GGAGTTCCTCAATTTTCTGACAGAT	59.057	40.000	5.87	0.00	31.08	2.90
2367	2520	6.432472	GGAGTTCCTCAATTTTCTGACAGATT	59.568	38.462	5.87	0.00	31.08	2.40
2368	2521	7.040132	GGAGTTCCTCAATTTTCTGACAGATTT	60.040	37.037	5.87	0.00	31.08	2.17
2369	2522	8.242729	AGTTCCTCAATTTTCTGACAGATTTT	57.757	30.769	5.87	0.00	0.00	1.82
2370	2523	9.354673	AGTTCCTCAATTTTCTGACAGATTTTA	57.645	29.630	5.87	0.00	0.00	1.52
2371	2524	9.617975	GTTCCTCAATTTTCTGACAGATTTTAG	57.382	33.333	5.87	2.53	0.00	1.85
2372	2525	8.924511	TCCTCAATTTTCTGACAGATTTTAGT	57.075	30.769	5.87	0.00	0.00	2.24
2373	2526	9.003658	TCCTCAATTTTCTGACAGATTTTAGTC	57.996	33.333	5.87	0.00	35.37	2.59
2374	2527	9.007901	CCTCAATTTTCTGACAGATTTTAGTCT	57.992	33.333	5.87	0.00	35.81	3.24
2376	2529	9.003658	TCAATTTTCTGACAGATTTTAGTCTCC	57.996	33.333	5.87	0.00	35.81	3.71
2377	2530	9.007901	CAATTTTCTGACAGATTTTAGTCTCCT	57.992	33.333	5.87	0.00	35.81	3.69
2378	2531	8.785329	ATTTTCTGACAGATTTTAGTCTCCTC	57.215	34.615	5.87	0.00	35.81	3.71
2379	2532	7.546250	TTTCTGACAGATTTTAGTCTCCTCT	57.454	36.000	5.87	0.00	35.81	3.69
2380	2533	7.546250	TTCTGACAGATTTTAGTCTCCTCTT	57.454	36.000	5.87	0.00	35.81	2.85
2381	2534	7.164230	TCTGACAGATTTTAGTCTCCTCTTC	57.836	40.000	0.00	0.00	35.81	2.87
2382	2535	6.721668	TCTGACAGATTTTAGTCTCCTCTTCA	59.278	38.462	0.00	0.00	35.81	3.02
2383	2536	6.692486	TGACAGATTTTAGTCTCCTCTTCAC	58.308	40.000	0.00	0.00	35.81	3.18
2384	2537	6.267699	TGACAGATTTTAGTCTCCTCTTCACA	59.732	38.462	0.00	0.00	35.81	3.58
2385	2538	7.038729	TGACAGATTTTAGTCTCCTCTTCACAT	60.039	37.037	0.00	0.00	35.81	3.21
2386	2539	7.102346	ACAGATTTTAGTCTCCTCTTCACATG	58.898	38.462	0.00	0.00	0.00	3.21
2387	2540	6.036953	CAGATTTTAGTCTCCTCTTCACATGC	59.963	42.308	0.00	0.00	0.00	4.06
2388	2541	3.895232	TTAGTCTCCTCTTCACATGCC	57.105	47.619	0.00	0.00	0.00	4.40
2389	2542	1.949799	AGTCTCCTCTTCACATGCCT	58.050	50.000	0.00	0.00	0.00	4.75
2390	2543	2.264455	AGTCTCCTCTTCACATGCCTT	58.736	47.619	0.00	0.00	0.00	4.35
2391	2544	2.027377	AGTCTCCTCTTCACATGCCTTG	60.027	50.000	0.00	0.00	0.00	3.61
2392	2545	2.027745	GTCTCCTCTTCACATGCCTTGA	60.028	50.000	0.00	0.00	0.00	3.02
2393	2546	2.235650	TCTCCTCTTCACATGCCTTGAG	59.764	50.000	0.00	0.00	0.00	3.02
2394	2547	2.235650	CTCCTCTTCACATGCCTTGAGA	59.764	50.000	0.00	0.00	0.00	3.27
2395	2548	2.639347	TCCTCTTCACATGCCTTGAGAA	59.361	45.455	0.00	0.00	34.36	2.87
2396	2549	2.746362	CCTCTTCACATGCCTTGAGAAC	59.254	50.000	0.00	0.00	32.45	3.01
2397	2550	3.558746	CCTCTTCACATGCCTTGAGAACT	60.559	47.826	0.00	0.00	32.45	3.01
2398	2551	4.070716	CTCTTCACATGCCTTGAGAACTT	58.929	43.478	0.00	0.00	32.45	2.66
2399	2552	4.067896	TCTTCACATGCCTTGAGAACTTC	58.932	43.478	0.00	0.00	32.45	3.01
2400	2553	3.490439	TCACATGCCTTGAGAACTTCA	57.510	42.857	0.00	0.00	0.00	3.02
2401	2554	4.025040	TCACATGCCTTGAGAACTTCAT	57.975	40.909	0.00	0.00	35.27	2.57
2402	2555	5.164620	TCACATGCCTTGAGAACTTCATA	57.835	39.130	0.00	0.00	35.27	2.15
2403	2556	5.748402	TCACATGCCTTGAGAACTTCATAT	58.252	37.500	0.00	0.00	35.27	1.78
2404	2557	6.182627	TCACATGCCTTGAGAACTTCATATT	58.817	36.000	0.00	0.00	35.27	1.28
2405	2558	6.094464	TCACATGCCTTGAGAACTTCATATTG	59.906	38.462	0.00	0.00	35.27	1.90
2406	2559	5.948162	ACATGCCTTGAGAACTTCATATTGT	59.052	36.000	0.00	0.00	35.27	2.71
2407	2560	6.094603	ACATGCCTTGAGAACTTCATATTGTC	59.905	38.462	0.00	0.00	35.27	3.18
2408	2561	4.943705	TGCCTTGAGAACTTCATATTGTCC	59.056	41.667	0.00	0.00	35.27	4.02
2409	2562	5.189180	GCCTTGAGAACTTCATATTGTCCT	58.811	41.667	0.00	0.00	35.27	3.85
2410	2563	5.649831	GCCTTGAGAACTTCATATTGTCCTT	59.350	40.000	0.00	0.00	35.27	3.36
2411	2564	6.823689	GCCTTGAGAACTTCATATTGTCCTTA	59.176	38.462	0.00	0.00	35.27	2.69
2412	2565	7.011857	GCCTTGAGAACTTCATATTGTCCTTAG	59.988	40.741	0.00	0.00	35.27	2.18
2413	2566	8.260818	CCTTGAGAACTTCATATTGTCCTTAGA	58.739	37.037	0.00	0.00	35.27	2.10

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
171	178	3.624861	CGAAGGCTTTGACTGAGCATAAT	59.375	43.478	8.93	0.00	41.89	1.28
379	387	1.153369	CCCACGATCCAACGATGCT	60.153	57.895	0.00	0.00	37.03	3.79
443	451	1.740332	TTTCGCGGAGTCAGTGGTGA	61.740	55.000	6.13	0.00	0.00	4.02
844	924	0.808755	GTGGCAATAACGGGGTCAAG	59.191	55.000	0.00	0.00	0.00	3.02
948	1032	1.956477	GTCAAAGAGCAAGAAGGGCAA	59.044	47.619	0.00	0.00	0.00	4.52
965	1049	3.511934	GCTAGAAGAAGGAGAAGTGGTCA	59.488	47.826	0.00	0.00	0.00	4.02
1642	1756	5.894298	TCATCAAACATGTAGATAGGGCT	57.106	39.130	11.95	0.00	0.00	5.19
1661	1775	5.293079	GCGAGCTCTCTTAGAAAACAATCAT	59.707	40.000	12.85	0.00	0.00	2.45
1674	1788	3.669251	ACTAACAAAGCGAGCTCTCTT	57.331	42.857	13.19	13.19	0.00	2.85
1825	1977	3.706698	TCCTCGATTTAGAGCATCGTTG	58.293	45.455	3.66	0.00	43.36	4.10
2076	2228	2.361789	GTCCCTTGCATTAAACGCCTA	58.638	47.619	0.00	0.00	0.00	3.93
2318	2471	8.246180	TCCGGAGTTATTACGTTGGATTATATC	58.754	37.037	0.00	0.00	0.00	1.63
2319	2472	8.125978	TCCGGAGTTATTACGTTGGATTATAT	57.874	34.615	0.00	0.00	0.00	0.86
2324	2477	3.703052	ACTCCGGAGTTATTACGTTGGAT	59.297	43.478	31.69	3.20	38.83	3.41
2325	2478	3.091545	ACTCCGGAGTTATTACGTTGGA	58.908	45.455	31.69	0.00	38.83	3.53
2326	2479	3.515330	ACTCCGGAGTTATTACGTTGG	57.485	47.619	31.69	3.94	38.83	3.77
2345	2498	9.617975	CTAAAATCTGTCAGAAAATTGAGGAAC	57.382	33.333	6.64	0.00	0.00	3.62
2346	2499	9.354673	ACTAAAATCTGTCAGAAAATTGAGGAA	57.645	29.630	6.64	0.00	0.00	3.36
2347	2500	8.924511	ACTAAAATCTGTCAGAAAATTGAGGA	57.075	30.769	6.64	0.00	0.00	3.71
2348	2501	9.007901	AGACTAAAATCTGTCAGAAAATTGAGG	57.992	33.333	6.64	1.65	35.81	3.86
2350	2503	9.003658	GGAGACTAAAATCTGTCAGAAAATTGA	57.996	33.333	6.64	0.00	35.81	2.57
2351	2504	9.007901	AGGAGACTAAAATCTGTCAGAAAATTG	57.992	33.333	6.64	0.78	40.61	2.32
2352	2505	9.225436	GAGGAGACTAAAATCTGTCAGAAAATT	57.775	33.333	6.64	5.17	44.43	1.82
2353	2506	8.601546	AGAGGAGACTAAAATCTGTCAGAAAAT	58.398	33.333	6.64	0.00	44.43	1.82
2354	2507	7.967908	AGAGGAGACTAAAATCTGTCAGAAAA	58.032	34.615	6.64	0.00	44.43	2.29
2355	2508	7.546250	AGAGGAGACTAAAATCTGTCAGAAA	57.454	36.000	6.64	0.00	44.43	2.52
2356	2509	7.233553	TGAAGAGGAGACTAAAATCTGTCAGAA	59.766	37.037	6.64	0.00	44.43	3.02
2357	2510	6.721668	TGAAGAGGAGACTAAAATCTGTCAGA	59.278	38.462	4.68	4.68	44.43	3.27
2358	2511	6.811170	GTGAAGAGGAGACTAAAATCTGTCAG	59.189	42.308	0.00	0.00	44.43	3.51
2359	2512	6.267699	TGTGAAGAGGAGACTAAAATCTGTCA	59.732	38.462	0.00	0.00	44.43	3.58
2360	2513	6.692486	TGTGAAGAGGAGACTAAAATCTGTC	58.308	40.000	0.00	0.00	44.43	3.51
2361	2514	6.672266	TGTGAAGAGGAGACTAAAATCTGT	57.328	37.500	0.00	0.00	44.43	3.41
2362	2515	6.036953	GCATGTGAAGAGGAGACTAAAATCTG	59.963	42.308	0.00	0.00	44.43	2.90
2363	2516	6.112058	GCATGTGAAGAGGAGACTAAAATCT	58.888	40.000	0.00	0.00	44.43	2.40
2364	2517	5.295540	GGCATGTGAAGAGGAGACTAAAATC	59.704	44.000	0.00	0.00	44.43	2.17
2365	2518	5.045286	AGGCATGTGAAGAGGAGACTAAAAT	60.045	40.000	0.00	0.00	44.43	1.82
2366	2519	4.287067	AGGCATGTGAAGAGGAGACTAAAA	59.713	41.667	0.00	0.00	44.43	1.52
2367	2520	3.840666	AGGCATGTGAAGAGGAGACTAAA	59.159	43.478	0.00	0.00	44.43	1.85
2368	2521	3.445008	AGGCATGTGAAGAGGAGACTAA	58.555	45.455	0.00	0.00	44.43	2.24
2369	2522	3.107402	AGGCATGTGAAGAGGAGACTA	57.893	47.619	0.00	0.00	44.43	2.59
2371	2524	2.027745	TCAAGGCATGTGAAGAGGAGAC	60.028	50.000	0.00	0.00	0.00	3.36
2372	2525	2.235650	CTCAAGGCATGTGAAGAGGAGA	59.764	50.000	0.00	0.00	0.00	3.71
2373	2526	2.235650	TCTCAAGGCATGTGAAGAGGAG	59.764	50.000	0.00	0.00	0.00	3.69
2374	2527	2.259917	TCTCAAGGCATGTGAAGAGGA	58.740	47.619	0.00	0.00	0.00	3.71
2375	2528	2.746362	GTTCTCAAGGCATGTGAAGAGG	59.254	50.000	7.39	0.00	40.97	3.69
2376	2529	3.672808	AGTTCTCAAGGCATGTGAAGAG	58.327	45.455	7.39	0.00	40.97	2.85
2377	2530	3.777106	AGTTCTCAAGGCATGTGAAGA	57.223	42.857	7.39	0.00	40.97	2.87
2378	2531	3.817084	TGAAGTTCTCAAGGCATGTGAAG	59.183	43.478	7.39	0.00	40.97	3.02
2379	2532	3.819368	TGAAGTTCTCAAGGCATGTGAA	58.181	40.909	4.17	3.38	38.76	3.18
2380	2533	3.490439	TGAAGTTCTCAAGGCATGTGA	57.510	42.857	4.17	0.00	0.00	3.58
2381	2534	6.127814	ACAATATGAAGTTCTCAAGGCATGTG	60.128	38.462	4.17	0.00	37.67	3.21
2382	2535	5.948162	ACAATATGAAGTTCTCAAGGCATGT	59.052	36.000	4.17	0.00	37.67	3.21
2383	2536	6.446781	ACAATATGAAGTTCTCAAGGCATG	57.553	37.500	4.17	0.00	37.67	4.06
2384	2537	5.591877	GGACAATATGAAGTTCTCAAGGCAT	59.408	40.000	4.17	0.00	37.67	4.40
2385	2538	4.943705	GGACAATATGAAGTTCTCAAGGCA	59.056	41.667	4.17	0.00	37.67	4.75
2386	2539	5.189180	AGGACAATATGAAGTTCTCAAGGC	58.811	41.667	4.17	0.00	37.67	4.35
2387	2540	8.260818	TCTAAGGACAATATGAAGTTCTCAAGG	58.739	37.037	4.17	0.00	37.67	3.61

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.