Multiple sequence alignment - TraesCS2D01G330600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G330600 chr2D 100.000 2464 0 0 1 2464 423305600 423303137 0.000000e+00 4551.0
1 TraesCS2D01G330600 chr2D 83.209 1477 136 50 26 1453 423289255 423287842 0.000000e+00 1251.0
2 TraesCS2D01G330600 chr2D 96.407 501 15 3 1965 2464 550644825 550644327 0.000000e+00 822.0
3 TraesCS2D01G330600 chr2D 95.372 497 22 1 1968 2464 103072409 103071914 0.000000e+00 789.0
4 TraesCS2D01G330600 chr2D 82.029 818 85 37 762 1532 423348061 423347259 7.430000e-180 640.0
5 TraesCS2D01G330600 chr2D 83.922 255 14 10 1727 1966 423348994 423348752 4.130000e-53 219.0
6 TraesCS2D01G330600 chr2D 79.412 204 17 10 1727 1927 423342962 423342781 1.200000e-23 121.0
7 TraesCS2D01G330600 chr2D 97.826 46 1 0 891 936 493086908 493086953 2.030000e-11 80.5
8 TraesCS2D01G330600 chr2A 91.867 664 31 5 884 1530 565274805 565275462 0.000000e+00 905.0
9 TraesCS2D01G330600 chr2A 93.238 562 30 6 26 582 565274009 565274567 0.000000e+00 821.0
10 TraesCS2D01G330600 chr2A 82.547 911 97 29 26 901 565261438 565262321 0.000000e+00 745.0
11 TraesCS2D01G330600 chr2A 89.943 527 29 11 990 1501 565262388 565262905 0.000000e+00 658.0
12 TraesCS2D01G330600 chr2A 82.700 763 65 25 763 1477 565234093 565234836 1.250000e-172 616.0
13 TraesCS2D01G330600 chr2A 80.670 895 74 48 597 1450 565287936 565288772 9.750000e-169 603.0
14 TraesCS2D01G330600 chr2A 89.117 487 32 9 1036 1501 565313453 565313939 9.820000e-164 586.0
15 TraesCS2D01G330600 chr2A 81.319 728 60 32 789 1463 565282699 565283403 2.810000e-144 521.0
16 TraesCS2D01G330600 chr2A 87.500 272 21 7 1649 1911 565263897 565264164 3.980000e-78 302.0
17 TraesCS2D01G330600 chr2A 87.449 247 9 9 618 843 565274565 565274810 5.220000e-67 265.0
18 TraesCS2D01G330600 chr2A 82.105 285 42 4 1528 1803 565279780 565280064 4.100000e-58 235.0
19 TraesCS2D01G330600 chr2A 83.077 260 16 9 472 727 565317644 565317879 6.900000e-51 211.0
20 TraesCS2D01G330600 chr2A 90.446 157 15 0 1810 1966 565233358 565233514 8.930000e-50 207.0
21 TraesCS2D01G330600 chr2A 92.035 113 7 2 421 533 565287826 565287936 9.120000e-35 158.0
22 TraesCS2D01G330600 chr2A 90.000 120 12 0 1847 1966 565280207 565280326 3.280000e-34 156.0
23 TraesCS2D01G330600 chr3D 97.206 501 12 2 1965 2464 80565513 80566012 0.000000e+00 846.0
24 TraesCS2D01G330600 chr3D 80.488 164 29 3 51 213 574574464 574574303 3.330000e-24 122.0
25 TraesCS2D01G330600 chr4D 96.982 497 14 1 1968 2464 119807606 119808101 0.000000e+00 833.0
26 TraesCS2D01G330600 chr4D 97.065 477 14 0 1988 2464 8010637 8010161 0.000000e+00 804.0
27 TraesCS2D01G330600 chr4D 95.582 498 20 2 1968 2464 181136023 181135527 0.000000e+00 797.0
28 TraesCS2D01G330600 chr2B 79.791 1242 137 39 33 1220 496214299 496213118 0.000000e+00 798.0
29 TraesCS2D01G330600 chr2B 80.475 1178 109 45 332 1453 496088550 496087438 0.000000e+00 789.0
30 TraesCS2D01G330600 chr2B 84.077 672 45 21 816 1453 496073737 496073094 2.110000e-165 592.0
31 TraesCS2D01G330600 chr2B 88.864 449 32 7 1044 1475 496177140 496176693 1.000000e-148 536.0
32 TraesCS2D01G330600 chr2B 81.742 712 59 25 789 1453 496355709 496355022 1.680000e-146 529.0
33 TraesCS2D01G330600 chr2B 86.301 511 37 18 1039 1530 496078719 496078223 2.170000e-145 525.0
34 TraesCS2D01G330600 chr2B 81.601 712 60 25 789 1453 496351395 496350708 7.810000e-145 523.0
35 TraesCS2D01G330600 chr2B 81.601 712 60 25 789 1453 496353552 496352865 7.810000e-145 523.0
36 TraesCS2D01G330600 chr2B 88.079 302 25 5 435 727 496074048 496073749 5.040000e-92 348.0
37 TraesCS2D01G330600 chr2B 84.959 246 15 9 1727 1966 496543395 496543166 1.910000e-56 230.0
38 TraesCS2D01G330600 chr2B 86.145 166 13 8 1809 1966 496358815 496358652 1.170000e-38 171.0
39 TraesCS2D01G330600 chr2B 94.667 75 4 0 1686 1760 496358888 496358814 1.550000e-22 117.0
40 TraesCS2D01G330600 chr1D 93.613 501 24 3 1965 2464 394954680 394955173 0.000000e+00 741.0
41 TraesCS2D01G330600 chr5D 78.919 185 33 6 51 231 510103461 510103279 1.200000e-23 121.0
42 TraesCS2D01G330600 chr3B 79.375 160 33 0 51 210 596231064 596230905 2.000000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G330600 chr2D 423303137 423305600 2463 True 4551.000000 4551 100.000000 1 2464 1 chr2D.!!$R3 2463
1 TraesCS2D01G330600 chr2D 423287842 423289255 1413 True 1251.000000 1251 83.209000 26 1453 1 chr2D.!!$R2 1427
2 TraesCS2D01G330600 chr2D 423347259 423348994 1735 True 429.500000 640 82.975500 762 1966 2 chr2D.!!$R6 1204
3 TraesCS2D01G330600 chr2A 565274009 565275462 1453 False 663.666667 905 90.851333 26 1530 3 chr2A.!!$F3 1504
4 TraesCS2D01G330600 chr2A 565261438 565264164 2726 False 568.333333 745 86.663333 26 1911 3 chr2A.!!$F2 1885
5 TraesCS2D01G330600 chr2A 565233358 565234836 1478 False 411.500000 616 86.573000 763 1966 2 chr2A.!!$F1 1203
6 TraesCS2D01G330600 chr2A 565313453 565317879 4426 False 398.500000 586 86.097000 472 1501 2 chr2A.!!$F6 1029
7 TraesCS2D01G330600 chr2A 565287826 565288772 946 False 380.500000 603 86.352500 421 1450 2 chr2A.!!$F5 1029
8 TraesCS2D01G330600 chr2A 565279780 565283403 3623 False 304.000000 521 84.474667 789 1966 3 chr2A.!!$F4 1177
9 TraesCS2D01G330600 chr2B 496213118 496214299 1181 True 798.000000 798 79.791000 33 1220 1 chr2B.!!$R4 1187
10 TraesCS2D01G330600 chr2B 496087438 496088550 1112 True 789.000000 789 80.475000 332 1453 1 chr2B.!!$R2 1121
11 TraesCS2D01G330600 chr2B 496073094 496074048 954 True 470.000000 592 86.078000 435 1453 2 chr2B.!!$R6 1018
12 TraesCS2D01G330600 chr2B 496350708 496358888 8180 True 372.600000 529 85.151200 789 1966 5 chr2B.!!$R7 1177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 800 0.526524 CTACTCACTGCCGCTGCTAC 60.527 60.0 0.7 0.0 38.71 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2084 12839 0.030773 GAGCGACTCATGCGTGGATA 59.969 55.0 5.98 0.0 37.44 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
219 230 6.677781 AGTATGGTGTTGTAATCAATTCCG 57.322 37.500 0.00 0.00 35.92 4.30
351 367 8.813282 GGTGTTGATTTATATTTAAAAAGGGCG 58.187 33.333 0.00 0.00 31.33 6.13
415 431 1.239347 CTGATCGAGGACCGCTGATA 58.761 55.000 0.00 0.00 38.37 2.15
443 462 5.532406 TGAATTTGAGCTATTGTATCCAGGC 59.468 40.000 0.00 0.00 0.00 4.85
453 472 6.486657 GCTATTGTATCCAGGCATTTTGTCTA 59.513 38.462 0.00 0.00 26.99 2.59
619 660 8.517878 CAAGTCATTGTTTAATGTCTCTCCATT 58.482 33.333 0.00 0.00 40.27 3.16
727 792 6.037098 CACTTGTATTAGTCTACTCACTGCC 58.963 44.000 0.00 0.00 0.00 4.85
729 794 2.873133 ATTAGTCTACTCACTGCCGC 57.127 50.000 0.00 0.00 0.00 6.53
730 795 1.835494 TTAGTCTACTCACTGCCGCT 58.165 50.000 0.00 0.00 0.00 5.52
731 796 1.095600 TAGTCTACTCACTGCCGCTG 58.904 55.000 0.00 0.00 0.00 5.18
733 798 1.979155 TCTACTCACTGCCGCTGCT 60.979 57.895 0.70 0.00 38.71 4.24
734 799 0.679960 TCTACTCACTGCCGCTGCTA 60.680 55.000 0.70 0.00 38.71 3.49
735 800 0.526524 CTACTCACTGCCGCTGCTAC 60.527 60.000 0.70 0.00 38.71 3.58
736 801 2.266376 TACTCACTGCCGCTGCTACG 62.266 60.000 0.70 0.00 38.71 3.51
774 860 0.535335 TAGCTTCGTTGGGATCGCTT 59.465 50.000 11.46 0.00 34.71 4.68
809 6179 1.077169 TCTAGGTCTCTGCTCCCACAA 59.923 52.381 0.00 0.00 0.00 3.33
872 6268 4.858850 TCCACCAAATCATCACAAGCTAT 58.141 39.130 0.00 0.00 0.00 2.97
876 6272 6.263842 CCACCAAATCATCACAAGCTATACAT 59.736 38.462 0.00 0.00 0.00 2.29
877 6273 7.445096 CCACCAAATCATCACAAGCTATACATA 59.555 37.037 0.00 0.00 0.00 2.29
878 6274 8.285394 CACCAAATCATCACAAGCTATACATAC 58.715 37.037 0.00 0.00 0.00 2.39
879 6275 7.992608 ACCAAATCATCACAAGCTATACATACA 59.007 33.333 0.00 0.00 0.00 2.29
880 6276 9.006839 CCAAATCATCACAAGCTATACATACAT 57.993 33.333 0.00 0.00 0.00 2.29
884 6280 8.382030 TCATCACAAGCTATACATACATTTGG 57.618 34.615 0.00 0.00 0.00 3.28
885 6281 6.618287 TCACAAGCTATACATACATTTGGC 57.382 37.500 0.00 0.00 0.00 4.52
886 6282 6.356556 TCACAAGCTATACATACATTTGGCT 58.643 36.000 0.00 0.00 0.00 4.75
887 6283 6.260714 TCACAAGCTATACATACATTTGGCTG 59.739 38.462 0.00 0.00 0.00 4.85
888 6284 5.009010 ACAAGCTATACATACATTTGGCTGC 59.991 40.000 0.00 0.00 0.00 5.25
936 6332 2.307392 TGCTACCCAAACCATTCTAGCA 59.693 45.455 0.00 0.00 35.40 3.49
1012 6460 0.037975 GCAAGCAATGAAGGTGGGTG 60.038 55.000 0.00 0.00 0.00 4.61
1024 6480 1.597461 GTGGGTGTCTGCTCCTACC 59.403 63.158 0.00 0.00 34.83 3.18
1196 8838 1.186917 CCAAAGCATTGACCCTGGCA 61.187 55.000 2.61 0.00 38.94 4.92
1253 8895 3.075005 GACGCCAGGGACCAGCTA 61.075 66.667 0.00 0.00 0.00 3.32
1492 9168 2.203070 CCGGACCATGTAGCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
1495 9171 1.821332 GGACCATGTAGCTGCCAGC 60.821 63.158 9.13 9.13 42.84 4.85
1541 9942 8.888716 CAGCAACTACAAATATATACAACCACA 58.111 33.333 0.00 0.00 0.00 4.17
1558 9959 6.980397 ACAACCACAAATTTTCATCAAGTCTC 59.020 34.615 0.00 0.00 0.00 3.36
1559 9960 5.762045 ACCACAAATTTTCATCAAGTCTCG 58.238 37.500 0.00 0.00 0.00 4.04
1560 9961 5.530915 ACCACAAATTTTCATCAAGTCTCGA 59.469 36.000 0.00 0.00 0.00 4.04
1561 9962 6.207417 ACCACAAATTTTCATCAAGTCTCGAT 59.793 34.615 0.00 0.00 0.00 3.59
1562 9963 6.744537 CCACAAATTTTCATCAAGTCTCGATC 59.255 38.462 0.00 0.00 0.00 3.69
1565 10096 8.352201 ACAAATTTTCATCAAGTCTCGATCAAA 58.648 29.630 0.00 0.00 0.00 2.69
1607 10801 5.680229 GCACTAATTTTCATGCAAGATCTCG 59.320 40.000 0.00 0.00 38.00 4.04
1616 10810 8.661352 TTTCATGCAAGATCTCGTGAATATAA 57.339 30.769 15.92 3.39 37.84 0.98
1625 10819 7.523219 AGATCTCGTGAATATAACATCGACTC 58.477 38.462 0.00 0.00 0.00 3.36
1634 10828 8.197439 TGAATATAACATCGACTCAGACATTGT 58.803 33.333 0.00 0.00 0.00 2.71
1638 10832 4.240888 ACATCGACTCAGACATTGTCAAG 58.759 43.478 18.57 16.14 34.60 3.02
1640 10834 3.902150 TCGACTCAGACATTGTCAAGTC 58.098 45.455 26.61 26.61 40.70 3.01
1642 10836 4.038042 TCGACTCAGACATTGTCAAGTCTT 59.962 41.667 29.73 12.28 42.87 3.01
1644 10838 5.570973 CGACTCAGACATTGTCAAGTCTTAG 59.429 44.000 29.73 19.89 42.87 2.18
1647 10841 6.703607 ACTCAGACATTGTCAAGTCTTAGTTG 59.296 38.462 18.57 4.59 43.20 3.16
1676 10897 4.841443 TTTAGCAACACTCTACACTCGA 57.159 40.909 0.00 0.00 0.00 4.04
1732 10962 5.095691 ACACTTGAAGCGTTTAGTCAATG 57.904 39.130 0.00 0.00 31.21 2.82
1737 10967 2.989422 AGCGTTTAGTCAATGGCAAC 57.011 45.000 0.00 0.00 0.00 4.17
1803 11033 6.132791 ACGACTCATGTTGTATGGTACTAG 57.867 41.667 0.00 0.00 38.92 2.57
1804 11034 5.651139 ACGACTCATGTTGTATGGTACTAGT 59.349 40.000 0.00 0.00 38.92 2.57
1807 11037 7.024340 ACTCATGTTGTATGGTACTAGTACG 57.976 40.000 23.40 9.76 36.94 3.67
1808 11038 6.600822 ACTCATGTTGTATGGTACTAGTACGT 59.399 38.462 23.40 17.52 36.94 3.57
1809 11039 7.770433 ACTCATGTTGTATGGTACTAGTACGTA 59.230 37.037 23.40 16.46 36.94 3.57
1838 11068 3.672781 GCTTACTACAACGTCTCTGGACC 60.673 52.174 0.00 0.00 39.15 4.46
1880 11110 2.534903 GCTACGGCCGAATTCTGCC 61.535 63.158 35.90 26.18 42.00 4.85
1881 11111 1.144057 CTACGGCCGAATTCTGCCT 59.856 57.895 35.90 21.83 43.05 4.75
1889 11119 0.933097 CGAATTCTGCCTGGTCATCG 59.067 55.000 3.52 0.00 0.00 3.84
1890 11120 0.659957 GAATTCTGCCTGGTCATCGC 59.340 55.000 0.00 0.00 0.00 4.58
1906 11136 6.648725 TGGTCATCGCATATTGATTATTTCGA 59.351 34.615 0.00 0.00 31.40 3.71
1911 11141 7.490962 TCGCATATTGATTATTTCGAAGGTT 57.509 32.000 0.00 0.00 0.00 3.50
1915 11145 8.958043 GCATATTGATTATTTCGAAGGTTTGAC 58.042 33.333 0.00 0.00 0.00 3.18
1922 11152 7.823149 TTATTTCGAAGGTTTGACTACTAGC 57.177 36.000 0.00 0.00 0.00 3.42
1923 11153 5.464030 TTTCGAAGGTTTGACTACTAGCT 57.536 39.130 0.00 0.00 0.00 3.32
1924 11154 6.579666 TTTCGAAGGTTTGACTACTAGCTA 57.420 37.500 0.00 0.00 0.00 3.32
1926 11156 6.579666 TCGAAGGTTTGACTACTAGCTAAA 57.420 37.500 0.00 0.00 0.00 1.85
1927 11157 7.166691 TCGAAGGTTTGACTACTAGCTAAAT 57.833 36.000 0.00 0.00 0.00 1.40
1928 11158 8.284945 TCGAAGGTTTGACTACTAGCTAAATA 57.715 34.615 0.00 0.00 0.00 1.40
1929 11159 8.742777 TCGAAGGTTTGACTACTAGCTAAATAA 58.257 33.333 0.00 0.00 0.00 1.40
1933 11163 9.819267 AGGTTTGACTACTAGCTAAATAACATC 57.181 33.333 0.00 0.00 0.00 3.06
1937 12692 7.952671 TGACTACTAGCTAAATAACATCCCAG 58.047 38.462 0.00 0.00 0.00 4.45
1945 12700 5.456763 GCTAAATAACATCCCAGGAGTCCAT 60.457 44.000 12.86 0.00 0.00 3.41
1955 12710 1.065126 CAGGAGTCCATGAAAGGTCCC 60.065 57.143 12.86 0.00 0.00 4.46
1956 12711 0.256177 GGAGTCCATGAAAGGTCCCC 59.744 60.000 3.60 0.00 0.00 4.81
1957 12712 1.290134 GAGTCCATGAAAGGTCCCCT 58.710 55.000 0.00 0.00 33.87 4.79
1968 12723 1.290134 AGGTCCCCTTTCAGCTTAGG 58.710 55.000 0.00 0.00 0.00 2.69
1971 12726 2.041216 GGTCCCCTTTCAGCTTAGGAAA 59.959 50.000 7.68 3.21 33.13 3.13
1972 12727 3.309193 GGTCCCCTTTCAGCTTAGGAAAT 60.309 47.826 7.68 0.00 34.08 2.17
1973 12728 3.696548 GTCCCCTTTCAGCTTAGGAAATG 59.303 47.826 7.68 1.70 34.08 2.32
1974 12729 3.333680 TCCCCTTTCAGCTTAGGAAATGT 59.666 43.478 7.68 0.00 34.08 2.71
1975 12730 4.089361 CCCCTTTCAGCTTAGGAAATGTT 58.911 43.478 7.68 0.00 34.08 2.71
1976 12731 4.528206 CCCCTTTCAGCTTAGGAAATGTTT 59.472 41.667 7.68 0.00 34.08 2.83
1977 12732 5.336770 CCCCTTTCAGCTTAGGAAATGTTTC 60.337 44.000 7.68 0.00 34.08 2.78
1978 12733 5.478332 CCCTTTCAGCTTAGGAAATGTTTCT 59.522 40.000 7.68 0.00 37.35 2.52
1979 12734 6.385033 CCTTTCAGCTTAGGAAATGTTTCTG 58.615 40.000 5.56 0.00 37.35 3.02
1981 12736 7.174946 CCTTTCAGCTTAGGAAATGTTTCTGTA 59.825 37.037 5.56 0.00 37.35 2.74
1983 12738 5.637810 TCAGCTTAGGAAATGTTTCTGTACG 59.362 40.000 5.56 0.00 37.35 3.67
1984 12739 4.935808 AGCTTAGGAAATGTTTCTGTACGG 59.064 41.667 5.56 0.00 37.35 4.02
1991 12746 0.878416 TGTTTCTGTACGGCAATGCC 59.122 50.000 15.52 15.52 46.75 4.40
2002 12757 2.514592 CAATGCCGGCCGAGTGAT 60.515 61.111 30.73 6.39 0.00 3.06
2003 12758 2.114670 CAATGCCGGCCGAGTGATT 61.115 57.895 30.73 13.12 0.00 2.57
2004 12759 1.819632 AATGCCGGCCGAGTGATTC 60.820 57.895 30.73 6.72 0.00 2.52
2012 12767 4.094684 CGAGTGATTCGGCTGGTC 57.905 61.111 0.00 0.00 45.54 4.02
2013 12768 1.215382 CGAGTGATTCGGCTGGTCA 59.785 57.895 0.00 0.00 45.54 4.02
2014 12769 0.389817 CGAGTGATTCGGCTGGTCAA 60.390 55.000 3.55 0.00 45.54 3.18
2015 12770 1.363744 GAGTGATTCGGCTGGTCAAG 58.636 55.000 3.55 0.00 0.00 3.02
2034 12789 2.727647 GCGAGCCGTGCGATCTAG 60.728 66.667 0.00 0.00 0.00 2.43
2035 12790 2.716244 CGAGCCGTGCGATCTAGT 59.284 61.111 0.00 0.00 0.00 2.57
2037 12792 0.384477 CGAGCCGTGCGATCTAGTAC 60.384 60.000 0.00 0.00 0.00 2.73
2038 12793 0.661552 GAGCCGTGCGATCTAGTACA 59.338 55.000 0.00 0.00 0.00 2.90
2039 12794 1.065102 GAGCCGTGCGATCTAGTACAA 59.935 52.381 0.00 0.00 0.00 2.41
2040 12795 1.681793 AGCCGTGCGATCTAGTACAAT 59.318 47.619 0.00 0.00 0.00 2.71
2041 12796 2.052157 GCCGTGCGATCTAGTACAATC 58.948 52.381 0.00 0.00 0.00 2.67
2042 12797 2.307929 CCGTGCGATCTAGTACAATCG 58.692 52.381 16.41 16.41 45.74 3.34
2043 12798 2.286831 CCGTGCGATCTAGTACAATCGT 60.287 50.000 19.67 0.00 44.99 3.73
2044 12799 2.714480 CGTGCGATCTAGTACAATCGTG 59.286 50.000 19.67 10.89 44.99 4.35
2046 12801 3.482472 GTGCGATCTAGTACAATCGTGTG 59.518 47.826 19.67 0.00 44.99 3.82
2047 12802 3.128068 TGCGATCTAGTACAATCGTGTGT 59.872 43.478 19.67 0.00 44.99 3.72
2048 12803 4.103357 GCGATCTAGTACAATCGTGTGTT 58.897 43.478 19.67 0.00 44.99 3.32
2049 12804 4.561606 GCGATCTAGTACAATCGTGTGTTT 59.438 41.667 19.67 0.00 44.99 2.83
2050 12805 5.061808 GCGATCTAGTACAATCGTGTGTTTT 59.938 40.000 19.67 0.00 44.99 2.43
2051 12806 6.683883 CGATCTAGTACAATCGTGTGTTTTC 58.316 40.000 13.85 0.00 39.83 2.29
2052 12807 6.527023 CGATCTAGTACAATCGTGTGTTTTCT 59.473 38.462 13.85 0.84 39.83 2.52
2053 12808 7.461546 CGATCTAGTACAATCGTGTGTTTTCTG 60.462 40.741 13.85 0.00 39.83 3.02
2054 12809 5.924254 TCTAGTACAATCGTGTGTTTTCTGG 59.076 40.000 0.00 0.72 38.82 3.86
2056 12811 3.963383 ACAATCGTGTGTTTTCTGGAC 57.037 42.857 0.00 0.00 36.31 4.02
2057 12812 2.286833 ACAATCGTGTGTTTTCTGGACG 59.713 45.455 0.00 0.00 36.31 4.79
2059 12814 2.012937 TCGTGTGTTTTCTGGACGTT 57.987 45.000 0.00 0.00 0.00 3.99
2060 12815 2.348660 TCGTGTGTTTTCTGGACGTTT 58.651 42.857 0.00 0.00 0.00 3.60
2062 12817 3.188873 TCGTGTGTTTTCTGGACGTTTTT 59.811 39.130 0.00 0.00 0.00 1.94
2064 12819 4.492998 CGTGTGTTTTCTGGACGTTTTTAC 59.507 41.667 0.00 0.00 0.00 2.01
2065 12820 4.492998 GTGTGTTTTCTGGACGTTTTTACG 59.507 41.667 0.00 0.00 39.31 3.18
2066 12821 3.479590 GTGTTTTCTGGACGTTTTTACGC 59.520 43.478 0.00 0.00 36.44 4.42
2068 12823 1.850377 TTCTGGACGTTTTTACGCGA 58.150 45.000 15.93 0.00 36.44 5.87
2069 12824 1.411394 TCTGGACGTTTTTACGCGAG 58.589 50.000 15.93 0.00 36.44 5.03
2072 12827 1.130955 GGACGTTTTTACGCGAGACA 58.869 50.000 15.93 0.00 36.44 3.41
2073 12828 1.123756 GGACGTTTTTACGCGAGACAG 59.876 52.381 15.93 0.00 36.44 3.51
2075 12830 2.195922 ACGTTTTTACGCGAGACAGTT 58.804 42.857 15.93 0.00 36.44 3.16
2076 12831 2.604462 ACGTTTTTACGCGAGACAGTTT 59.396 40.909 15.93 0.00 36.44 2.66
2077 12832 3.062504 ACGTTTTTACGCGAGACAGTTTT 59.937 39.130 15.93 0.00 36.44 2.43
2078 12833 3.651768 CGTTTTTACGCGAGACAGTTTTC 59.348 43.478 15.93 0.00 0.00 2.29
2079 12834 4.580528 GTTTTTACGCGAGACAGTTTTCA 58.419 39.130 15.93 0.00 0.00 2.69
2080 12835 4.446857 TTTTACGCGAGACAGTTTTCAG 57.553 40.909 15.93 0.00 0.00 3.02
2081 12836 1.415374 TACGCGAGACAGTTTTCAGC 58.585 50.000 15.93 0.00 0.00 4.26
2082 12837 1.222115 ACGCGAGACAGTTTTCAGCC 61.222 55.000 15.93 0.00 0.00 4.85
2084 12839 1.230324 GCGAGACAGTTTTCAGCCTT 58.770 50.000 0.00 0.00 0.00 4.35
2086 12841 3.003480 GCGAGACAGTTTTCAGCCTTAT 58.997 45.455 0.00 0.00 0.00 1.73
2087 12842 3.062774 GCGAGACAGTTTTCAGCCTTATC 59.937 47.826 0.00 0.00 0.00 1.75
2088 12843 3.619038 CGAGACAGTTTTCAGCCTTATCC 59.381 47.826 0.00 0.00 0.00 2.59
2090 12845 4.327680 AGACAGTTTTCAGCCTTATCCAC 58.672 43.478 0.00 0.00 0.00 4.02
2091 12846 3.074412 ACAGTTTTCAGCCTTATCCACG 58.926 45.455 0.00 0.00 0.00 4.94
2092 12847 2.084546 AGTTTTCAGCCTTATCCACGC 58.915 47.619 0.00 0.00 0.00 5.34
2097 12852 1.202568 TCAGCCTTATCCACGCATGAG 60.203 52.381 0.00 0.00 0.00 2.90
2099 12854 1.202580 AGCCTTATCCACGCATGAGTC 60.203 52.381 0.00 0.00 0.00 3.36
2100 12855 1.491670 CCTTATCCACGCATGAGTCG 58.508 55.000 0.00 0.00 0.00 4.18
2101 12856 0.855349 CTTATCCACGCATGAGTCGC 59.145 55.000 0.00 0.00 0.00 5.19
2103 12858 0.030773 TATCCACGCATGAGTCGCTC 59.969 55.000 0.00 0.58 0.00 5.03
2104 12859 1.670949 ATCCACGCATGAGTCGCTCT 61.671 55.000 0.00 0.00 0.00 4.09
2105 12860 2.163390 CCACGCATGAGTCGCTCTG 61.163 63.158 0.00 5.60 0.00 3.35
2106 12861 1.153958 CACGCATGAGTCGCTCTGA 60.154 57.895 0.00 0.00 0.00 3.27
2107 12862 0.527169 CACGCATGAGTCGCTCTGAT 60.527 55.000 0.00 0.00 0.00 2.90
2108 12863 0.248825 ACGCATGAGTCGCTCTGATC 60.249 55.000 0.00 0.00 0.00 2.92
2109 12864 0.938637 CGCATGAGTCGCTCTGATCC 60.939 60.000 0.00 0.00 0.00 3.36
2110 12865 0.103755 GCATGAGTCGCTCTGATCCA 59.896 55.000 0.00 0.00 0.00 3.41
2111 12866 1.850377 CATGAGTCGCTCTGATCCAC 58.150 55.000 8.07 0.00 0.00 4.02
2112 12867 1.135721 CATGAGTCGCTCTGATCCACA 59.864 52.381 8.07 0.00 0.00 4.17
2114 12869 0.524392 GAGTCGCTCTGATCCACACG 60.524 60.000 0.00 0.00 0.00 4.49
2115 12870 1.213013 GTCGCTCTGATCCACACGT 59.787 57.895 0.00 0.00 0.00 4.49
2116 12871 0.388649 GTCGCTCTGATCCACACGTT 60.389 55.000 0.00 0.00 0.00 3.99
2117 12872 0.109272 TCGCTCTGATCCACACGTTC 60.109 55.000 0.00 0.00 0.00 3.95
2118 12873 0.109086 CGCTCTGATCCACACGTTCT 60.109 55.000 0.00 0.00 0.00 3.01
2122 12877 1.546029 TCTGATCCACACGTTCTCCTG 59.454 52.381 0.00 0.00 0.00 3.86
2123 12878 1.273606 CTGATCCACACGTTCTCCTGT 59.726 52.381 0.00 0.00 0.00 4.00
2124 12879 1.272490 TGATCCACACGTTCTCCTGTC 59.728 52.381 0.00 0.00 0.00 3.51
2125 12880 1.272490 GATCCACACGTTCTCCTGTCA 59.728 52.381 0.00 0.00 0.00 3.58
2128 12883 1.273606 CCACACGTTCTCCTGTCATCT 59.726 52.381 0.00 0.00 0.00 2.90
2130 12885 1.546476 ACACGTTCTCCTGTCATCTCC 59.454 52.381 0.00 0.00 0.00 3.71
2131 12886 1.821753 CACGTTCTCCTGTCATCTCCT 59.178 52.381 0.00 0.00 0.00 3.69
2133 12888 3.018149 ACGTTCTCCTGTCATCTCCTAC 58.982 50.000 0.00 0.00 0.00 3.18
2134 12889 2.359531 CGTTCTCCTGTCATCTCCTACC 59.640 54.545 0.00 0.00 0.00 3.18
2136 12891 3.586470 TCTCCTGTCATCTCCTACCTC 57.414 52.381 0.00 0.00 0.00 3.85
2137 12892 3.127250 TCTCCTGTCATCTCCTACCTCT 58.873 50.000 0.00 0.00 0.00 3.69
2140 12895 2.955660 CCTGTCATCTCCTACCTCTGAC 59.044 54.545 0.00 0.00 37.36 3.51
2141 12896 3.372566 CCTGTCATCTCCTACCTCTGACT 60.373 52.174 0.00 0.00 37.65 3.41
2143 12898 4.274147 TGTCATCTCCTACCTCTGACTTC 58.726 47.826 0.00 0.00 37.65 3.01
2144 12899 3.634910 GTCATCTCCTACCTCTGACTTCC 59.365 52.174 0.00 0.00 34.73 3.46
2146 12901 4.017037 TCATCTCCTACCTCTGACTTCCTT 60.017 45.833 0.00 0.00 0.00 3.36
2147 12902 3.970842 TCTCCTACCTCTGACTTCCTTC 58.029 50.000 0.00 0.00 0.00 3.46
2150 12905 4.689062 TCCTACCTCTGACTTCCTTCATT 58.311 43.478 0.00 0.00 0.00 2.57
2151 12906 4.712337 TCCTACCTCTGACTTCCTTCATTC 59.288 45.833 0.00 0.00 0.00 2.67
2152 12907 3.990959 ACCTCTGACTTCCTTCATTCC 57.009 47.619 0.00 0.00 0.00 3.01
2154 12909 3.517500 ACCTCTGACTTCCTTCATTCCTC 59.482 47.826 0.00 0.00 0.00 3.71
2156 12911 4.502962 CTCTGACTTCCTTCATTCCTCAC 58.497 47.826 0.00 0.00 0.00 3.51
2157 12912 3.056536 TCTGACTTCCTTCATTCCTCACG 60.057 47.826 0.00 0.00 0.00 4.35
2158 12913 2.028112 TGACTTCCTTCATTCCTCACGG 60.028 50.000 0.00 0.00 0.00 4.94
2159 12914 1.279271 ACTTCCTTCATTCCTCACGGG 59.721 52.381 0.00 0.00 0.00 5.28
2162 12917 1.452108 CTTCATTCCTCACGGGGGC 60.452 63.158 0.00 0.00 35.33 5.80
2163 12918 3.323758 TTCATTCCTCACGGGGGCG 62.324 63.158 0.00 0.00 35.33 6.13
2165 12920 3.782443 ATTCCTCACGGGGGCGTC 61.782 66.667 0.00 0.00 35.33 5.19
2169 12924 3.066190 CTCACGGGGGCGTCACTA 61.066 66.667 0.00 0.00 0.00 2.74
2170 12925 3.352338 CTCACGGGGGCGTCACTAC 62.352 68.421 0.00 0.00 0.00 2.73
2171 12926 4.446413 CACGGGGGCGTCACTACC 62.446 72.222 0.00 0.00 0.00 3.18
2172 12927 4.691359 ACGGGGGCGTCACTACCT 62.691 66.667 0.00 0.00 0.00 3.08
2173 12928 4.143333 CGGGGGCGTCACTACCTG 62.143 72.222 0.00 0.00 0.00 4.00
2174 12929 4.468689 GGGGGCGTCACTACCTGC 62.469 72.222 0.00 0.00 0.00 4.85
2176 12931 2.434359 GGGCGTCACTACCTGCAC 60.434 66.667 0.00 0.00 0.00 4.57
2177 12932 2.342279 GGCGTCACTACCTGCACA 59.658 61.111 0.00 0.00 0.00 4.57
2178 12933 2.027625 GGCGTCACTACCTGCACAC 61.028 63.158 0.00 0.00 0.00 3.82
2179 12934 2.372690 GCGTCACTACCTGCACACG 61.373 63.158 0.00 0.00 0.00 4.49
2180 12935 2.372690 CGTCACTACCTGCACACGC 61.373 63.158 0.00 0.00 39.24 5.34
2181 12936 2.027625 GTCACTACCTGCACACGCC 61.028 63.158 0.00 0.00 37.32 5.68
2182 12937 3.112075 CACTACCTGCACACGCCG 61.112 66.667 0.00 0.00 37.32 6.46
2230 12985 2.936032 GGCACAGACCCTTCCCCT 60.936 66.667 0.00 0.00 0.00 4.79
2232 12987 1.002011 GCACAGACCCTTCCCCTTC 60.002 63.158 0.00 0.00 0.00 3.46
2233 12988 1.685820 CACAGACCCTTCCCCTTCC 59.314 63.158 0.00 0.00 0.00 3.46
2234 12989 1.541620 ACAGACCCTTCCCCTTCCC 60.542 63.158 0.00 0.00 0.00 3.97
2235 12990 1.229984 CAGACCCTTCCCCTTCCCT 60.230 63.158 0.00 0.00 0.00 4.20
2236 12991 1.083141 AGACCCTTCCCCTTCCCTC 59.917 63.158 0.00 0.00 0.00 4.30
2237 12992 2.001838 GACCCTTCCCCTTCCCTCC 61.002 68.421 0.00 0.00 0.00 4.30
2238 12993 2.696504 CCCTTCCCCTTCCCTCCC 60.697 72.222 0.00 0.00 0.00 4.30
2239 12994 2.696504 CCTTCCCCTTCCCTCCCC 60.697 72.222 0.00 0.00 0.00 4.81
2240 12995 3.090532 CTTCCCCTTCCCTCCCCG 61.091 72.222 0.00 0.00 0.00 5.73
2248 13003 3.995809 TTCCCTCCCCGCCAGGTAG 62.996 68.421 0.00 0.00 35.12 3.18
2271 13216 3.721706 CCGCCTTCTGCCCCTCTT 61.722 66.667 0.00 0.00 36.24 2.85
2272 13217 2.124942 CGCCTTCTGCCCCTCTTC 60.125 66.667 0.00 0.00 36.24 2.87
2273 13218 2.124942 GCCTTCTGCCCCTCTTCG 60.125 66.667 0.00 0.00 0.00 3.79
2274 13219 2.660064 GCCTTCTGCCCCTCTTCGA 61.660 63.158 0.00 0.00 0.00 3.71
2276 13221 1.153745 CTTCTGCCCCTCTTCGACG 60.154 63.158 0.00 0.00 0.00 5.12
2277 13222 3.296709 TTCTGCCCCTCTTCGACGC 62.297 63.158 0.00 0.00 0.00 5.19
2280 13225 4.856607 GCCCCTCTTCGACGCGAG 62.857 72.222 15.93 6.55 37.14 5.03
2281 13226 4.856607 CCCCTCTTCGACGCGAGC 62.857 72.222 15.93 2.83 37.14 5.03
2295 13240 4.408821 GAGCGGGCCACACATCCA 62.409 66.667 4.39 0.00 0.00 3.41
2296 13241 3.704231 GAGCGGGCCACACATCCAT 62.704 63.158 4.39 0.00 0.00 3.41
2297 13242 2.191908 GCGGGCCACACATCCATA 59.808 61.111 4.39 0.00 0.00 2.74
2299 13244 1.893808 CGGGCCACACATCCATAGC 60.894 63.158 4.39 0.00 0.00 2.97
2300 13245 1.529244 GGGCCACACATCCATAGCC 60.529 63.158 4.39 0.00 39.73 3.93
2301 13246 1.533711 GGCCACACATCCATAGCCT 59.466 57.895 0.00 0.00 37.42 4.58
2302 13247 0.820891 GGCCACACATCCATAGCCTG 60.821 60.000 0.00 0.00 37.42 4.85
2303 13248 0.107017 GCCACACATCCATAGCCTGT 60.107 55.000 0.00 0.00 0.00 4.00
2304 13249 1.683011 GCCACACATCCATAGCCTGTT 60.683 52.381 0.00 0.00 0.00 3.16
2305 13250 2.019249 CCACACATCCATAGCCTGTTG 58.981 52.381 0.00 0.00 0.00 3.33
2309 13254 3.244875 ACACATCCATAGCCTGTTGTGAA 60.245 43.478 17.09 0.00 38.45 3.18
2310 13255 3.376234 CACATCCATAGCCTGTTGTGAAG 59.624 47.826 9.70 0.00 38.45 3.02
2312 13257 1.098050 CCATAGCCTGTTGTGAAGCC 58.902 55.000 0.00 0.00 0.00 4.35
2313 13258 1.340405 CCATAGCCTGTTGTGAAGCCT 60.340 52.381 0.00 0.00 0.00 4.58
2314 13259 2.012673 CATAGCCTGTTGTGAAGCCTC 58.987 52.381 0.00 0.00 0.00 4.70
2315 13260 1.352083 TAGCCTGTTGTGAAGCCTCT 58.648 50.000 0.00 0.00 0.00 3.69
2317 13262 0.957888 GCCTGTTGTGAAGCCTCTCC 60.958 60.000 0.00 0.00 0.00 3.71
2319 13264 0.318441 CTGTTGTGAAGCCTCTCCGA 59.682 55.000 0.00 0.00 0.00 4.55
2332 13277 2.435586 TCCGAGGGAGACGACGAC 60.436 66.667 0.00 0.00 0.00 4.34
2335 13280 2.113433 CGAGGGAGACGACGACCAT 61.113 63.158 0.00 0.00 0.00 3.55
2336 13281 1.433879 GAGGGAGACGACGACCATG 59.566 63.158 0.00 0.00 0.00 3.66
2337 13282 2.005960 GAGGGAGACGACGACCATGG 62.006 65.000 11.19 11.19 0.00 3.66
2338 13283 2.348888 GGGAGACGACGACCATGGT 61.349 63.158 19.89 19.89 0.00 3.55
2339 13284 1.590147 GGAGACGACGACCATGGTT 59.410 57.895 20.85 3.15 0.00 3.67
2340 13285 0.458025 GGAGACGACGACCATGGTTC 60.458 60.000 20.85 12.81 0.00 3.62
2341 13286 0.797249 GAGACGACGACCATGGTTCG 60.797 60.000 28.99 28.99 35.33 3.95
2342 13287 1.210931 GACGACGACCATGGTTCGA 59.789 57.895 34.53 0.00 33.94 3.71
2344 13289 0.665369 ACGACGACCATGGTTCGAAC 60.665 55.000 34.53 24.84 33.94 3.95
2345 13290 0.665068 CGACGACCATGGTTCGAACA 60.665 55.000 30.54 15.43 32.13 3.18
2348 13293 0.790207 CGACCATGGTTCGAACACAG 59.210 55.000 28.24 16.44 0.00 3.66
2350 13295 0.889186 ACCATGGTTCGAACACAGCC 60.889 55.000 28.24 12.36 0.00 4.85
2353 13298 1.541147 CATGGTTCGAACACAGCCATT 59.459 47.619 28.24 7.20 37.80 3.16
2354 13299 0.950836 TGGTTCGAACACAGCCATTG 59.049 50.000 28.24 0.00 0.00 2.82
2356 13301 2.147958 GGTTCGAACACAGCCATTGTA 58.852 47.619 28.24 0.00 38.16 2.41
2357 13302 2.159627 GGTTCGAACACAGCCATTGTAG 59.840 50.000 28.24 0.00 38.16 2.74
2359 13304 3.120321 TCGAACACAGCCATTGTAGTT 57.880 42.857 0.00 0.00 38.16 2.24
2361 13306 4.242475 TCGAACACAGCCATTGTAGTTAG 58.758 43.478 0.00 0.00 38.16 2.34
2363 13308 4.870426 CGAACACAGCCATTGTAGTTAGAT 59.130 41.667 0.00 0.00 38.16 1.98
2364 13309 5.220472 CGAACACAGCCATTGTAGTTAGATG 60.220 44.000 0.00 0.00 38.16 2.90
2365 13310 4.517285 ACACAGCCATTGTAGTTAGATGG 58.483 43.478 0.00 0.00 42.54 3.51
2366 13311 4.019321 ACACAGCCATTGTAGTTAGATGGT 60.019 41.667 3.81 0.00 41.85 3.55
2367 13312 4.572389 CACAGCCATTGTAGTTAGATGGTC 59.428 45.833 3.81 0.00 41.85 4.02
2369 13314 4.572389 CAGCCATTGTAGTTAGATGGTCAC 59.428 45.833 3.81 0.00 41.85 3.67
2370 13315 4.225042 AGCCATTGTAGTTAGATGGTCACA 59.775 41.667 3.81 0.00 41.85 3.58
2371 13316 4.572389 GCCATTGTAGTTAGATGGTCACAG 59.428 45.833 3.81 0.00 41.85 3.66
2372 13317 4.572389 CCATTGTAGTTAGATGGTCACAGC 59.428 45.833 0.00 0.00 36.43 4.40
2374 13319 4.882842 TGTAGTTAGATGGTCACAGCAA 57.117 40.909 0.00 0.00 34.87 3.91
2376 13321 5.804639 TGTAGTTAGATGGTCACAGCAAAT 58.195 37.500 0.00 0.00 34.87 2.32
2377 13322 6.941857 TGTAGTTAGATGGTCACAGCAAATA 58.058 36.000 0.00 0.00 34.87 1.40
2378 13323 7.041721 TGTAGTTAGATGGTCACAGCAAATAG 58.958 38.462 0.00 0.00 34.87 1.73
2379 13324 4.878397 AGTTAGATGGTCACAGCAAATAGC 59.122 41.667 0.00 0.00 46.19 2.97
2395 13340 2.877097 TAGCTCATTTGGTTCCAGCA 57.123 45.000 0.00 0.00 32.17 4.41
2398 13343 2.298163 AGCTCATTTGGTTCCAGCAAAG 59.702 45.455 7.16 1.09 46.83 2.77
2399 13344 2.297033 GCTCATTTGGTTCCAGCAAAGA 59.703 45.455 7.16 4.60 46.83 2.52
2400 13345 3.858503 GCTCATTTGGTTCCAGCAAAGAC 60.859 47.826 7.16 0.00 46.83 3.01
2401 13346 2.293122 TCATTTGGTTCCAGCAAAGACG 59.707 45.455 7.16 0.00 46.83 4.18
2402 13347 1.028905 TTTGGTTCCAGCAAAGACGG 58.971 50.000 0.00 0.00 40.22 4.79
2403 13348 0.106918 TTGGTTCCAGCAAAGACGGT 60.107 50.000 0.00 0.00 32.03 4.83
2404 13349 0.534203 TGGTTCCAGCAAAGACGGTC 60.534 55.000 0.00 0.00 0.00 4.79
2406 13351 0.878961 GTTCCAGCAAAGACGGTCGT 60.879 55.000 1.89 0.00 0.00 4.34
2407 13352 0.599204 TTCCAGCAAAGACGGTCGTC 60.599 55.000 14.79 14.79 44.86 4.20
2419 13364 3.033764 GTCGTCGGTCGCAGCAAA 61.034 61.111 0.00 0.00 39.67 3.68
2420 13365 2.048597 TCGTCGGTCGCAGCAAAT 60.049 55.556 0.00 0.00 39.67 2.32
2421 13366 2.092291 TCGTCGGTCGCAGCAAATC 61.092 57.895 0.00 0.00 39.67 2.17
2422 13367 2.379634 CGTCGGTCGCAGCAAATCA 61.380 57.895 0.00 0.00 0.00 2.57
2424 13369 2.032634 TCGGTCGCAGCAAATCACC 61.033 57.895 0.00 0.00 0.00 4.02
2426 13371 1.675641 GGTCGCAGCAAATCACCCT 60.676 57.895 0.00 0.00 0.00 4.34
2427 13372 1.648467 GGTCGCAGCAAATCACCCTC 61.648 60.000 0.00 0.00 0.00 4.30
2429 13374 2.409870 CGCAGCAAATCACCCTCCC 61.410 63.158 0.00 0.00 0.00 4.30
2431 13376 1.002134 CAGCAAATCACCCTCCCGT 60.002 57.895 0.00 0.00 0.00 5.28
2432 13377 1.026718 CAGCAAATCACCCTCCCGTC 61.027 60.000 0.00 0.00 0.00 4.79
2433 13378 2.106683 GCAAATCACCCTCCCGTCG 61.107 63.158 0.00 0.00 0.00 5.12
2435 13380 1.611261 AAATCACCCTCCCGTCGGA 60.611 57.895 14.39 0.00 36.45 4.55
2443 13388 2.823114 TCCCGTCGGAGCAAAACA 59.177 55.556 14.39 0.00 32.86 2.83
2444 13389 1.595929 TCCCGTCGGAGCAAAACAC 60.596 57.895 14.39 0.00 32.86 3.32
2445 13390 2.549282 CCGTCGGAGCAAAACACG 59.451 61.111 4.91 0.00 0.00 4.49
2446 13391 2.241880 CCGTCGGAGCAAAACACGT 61.242 57.895 4.91 0.00 0.00 4.49
2447 13392 1.200839 CGTCGGAGCAAAACACGTC 59.799 57.895 0.00 0.00 0.00 4.34
2448 13393 1.484227 CGTCGGAGCAAAACACGTCA 61.484 55.000 0.00 0.00 0.00 4.35
2450 13395 1.155424 TCGGAGCAAAACACGTCACC 61.155 55.000 0.00 0.00 0.00 4.02
2451 13396 1.433053 CGGAGCAAAACACGTCACCA 61.433 55.000 0.00 0.00 0.00 4.17
2453 13398 1.336755 GGAGCAAAACACGTCACCAAT 59.663 47.619 0.00 0.00 0.00 3.16
2454 13399 2.223711 GGAGCAAAACACGTCACCAATT 60.224 45.455 0.00 0.00 0.00 2.32
2455 13400 2.788786 GAGCAAAACACGTCACCAATTG 59.211 45.455 0.00 0.00 0.00 2.32
2456 13401 1.257675 GCAAAACACGTCACCAATTGC 59.742 47.619 0.00 0.00 35.49 3.56
2457 13402 2.808244 CAAAACACGTCACCAATTGCT 58.192 42.857 0.00 0.00 0.00 3.91
2458 13403 2.774439 AAACACGTCACCAATTGCTC 57.226 45.000 0.00 0.00 0.00 4.26
2459 13404 0.586319 AACACGTCACCAATTGCTCG 59.414 50.000 0.00 4.33 0.00 5.03
2460 13405 1.227999 ACACGTCACCAATTGCTCGG 61.228 55.000 0.00 0.00 0.00 4.63
2461 13406 1.070786 ACGTCACCAATTGCTCGGT 59.929 52.632 0.00 0.00 35.27 4.69
2462 13407 0.534203 ACGTCACCAATTGCTCGGTT 60.534 50.000 0.00 0.00 31.41 4.44
2463 13408 0.165944 CGTCACCAATTGCTCGGTTC 59.834 55.000 0.00 0.00 31.41 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.776322 TTCCATGGAGGCGTGCGG 62.776 66.667 15.53 0.00 37.29 5.69
17 18 2.114670 AATTCCATGGAGGCGTGCG 61.115 57.895 15.53 0.00 37.29 5.34
18 19 1.315257 ACAATTCCATGGAGGCGTGC 61.315 55.000 15.53 0.00 37.29 5.34
19 20 1.135315 CAACAATTCCATGGAGGCGTG 60.135 52.381 15.53 13.43 37.29 5.34
20 21 1.176527 CAACAATTCCATGGAGGCGT 58.823 50.000 15.53 10.17 37.29 5.68
22 23 2.101917 CCATCAACAATTCCATGGAGGC 59.898 50.000 15.53 0.00 38.52 4.70
23 24 2.101917 GCCATCAACAATTCCATGGAGG 59.898 50.000 15.53 10.39 38.52 4.30
219 230 0.445436 CGTCCAGAGAAAGCACATGC 59.555 55.000 0.00 0.00 42.49 4.06
290 305 2.543861 CGGTCGAATGATACAGGGTGAG 60.544 54.545 0.00 0.00 0.00 3.51
384 400 3.075884 CCTCGATCAGCTACTAGTACCC 58.924 54.545 0.00 0.00 0.00 3.69
727 792 1.774085 GAAGATTCGTACGTAGCAGCG 59.226 52.381 16.05 0.00 37.94 5.18
729 794 4.029704 GTGAGAAGATTCGTACGTAGCAG 58.970 47.826 16.05 0.00 0.00 4.24
730 795 3.484721 CGTGAGAAGATTCGTACGTAGCA 60.485 47.826 16.05 0.00 36.97 3.49
731 796 3.027710 CGTGAGAAGATTCGTACGTAGC 58.972 50.000 16.05 8.80 36.97 3.58
733 798 3.928992 AGTCGTGAGAAGATTCGTACGTA 59.071 43.478 16.05 6.02 45.01 3.57
734 799 2.740981 AGTCGTGAGAAGATTCGTACGT 59.259 45.455 16.05 0.00 45.01 3.57
735 800 3.386613 AGTCGTGAGAAGATTCGTACG 57.613 47.619 9.53 9.53 45.01 3.67
736 801 4.034279 AGCTAGTCGTGAGAAGATTCGTAC 59.966 45.833 0.00 0.00 45.01 3.67
872 6268 3.446516 TGCAATGCAGCCAAATGTATGTA 59.553 39.130 2.72 0.00 33.32 2.29
876 6272 2.761767 AGATGCAATGCAGCCAAATGTA 59.238 40.909 20.48 0.00 46.90 2.29
877 6273 1.553248 AGATGCAATGCAGCCAAATGT 59.447 42.857 20.48 0.00 46.90 2.71
878 6274 1.933181 CAGATGCAATGCAGCCAAATG 59.067 47.619 20.48 7.96 46.90 2.32
879 6275 1.742411 GCAGATGCAATGCAGCCAAAT 60.742 47.619 20.48 0.00 46.90 2.32
880 6276 0.390603 GCAGATGCAATGCAGCCAAA 60.391 50.000 20.48 0.00 46.90 3.28
881 6277 1.216977 GCAGATGCAATGCAGCCAA 59.783 52.632 20.48 0.00 46.90 4.52
882 6278 0.394625 TAGCAGATGCAATGCAGCCA 60.395 50.000 20.48 0.48 46.90 4.75
883 6279 0.742505 TTAGCAGATGCAATGCAGCC 59.257 50.000 20.48 10.90 46.90 4.85
884 6280 2.098607 TCTTTAGCAGATGCAATGCAGC 59.901 45.455 24.17 16.43 45.98 5.25
885 6281 4.537965 GATCTTTAGCAGATGCAATGCAG 58.462 43.478 24.17 15.18 42.92 4.41
886 6282 3.002965 CGATCTTTAGCAGATGCAATGCA 59.997 43.478 24.17 11.44 42.92 3.96
887 6283 3.249320 TCGATCTTTAGCAGATGCAATGC 59.751 43.478 17.12 17.12 42.92 3.56
888 6284 5.178809 TGATCGATCTTTAGCAGATGCAATG 59.821 40.000 25.02 0.00 42.92 2.82
936 6332 1.909700 ATGTTGGTGTTCGAGGCAAT 58.090 45.000 0.00 0.00 0.00 3.56
1012 6460 5.246307 AGTAAACAAATGGTAGGAGCAGAC 58.754 41.667 0.00 0.00 0.00 3.51
1024 6480 8.523464 CAAAACAAGACGAGAAGTAAACAAATG 58.477 33.333 0.00 0.00 0.00 2.32
1073 6533 4.979197 CCAGCTTCAGAGTAATGTATCGAC 59.021 45.833 0.00 0.00 0.00 4.20
1492 9168 2.247311 AAATTAAAGCACGCTCGCTG 57.753 45.000 0.00 0.00 42.89 5.18
1495 9171 3.550561 TGACAAAATTAAAGCACGCTCG 58.449 40.909 0.00 0.00 0.00 5.03
1541 9942 9.350357 CATTTGATCGAGACTTGATGAAAATTT 57.650 29.630 17.86 3.29 33.70 1.82
1545 9946 7.550196 TCATCATTTGATCGAGACTTGATGAAA 59.450 33.333 16.69 16.69 42.77 2.69
1547 9948 6.576185 TCATCATTTGATCGAGACTTGATGA 58.424 36.000 18.85 18.85 43.22 2.92
1582 10113 6.519679 AGATCTTGCATGAAAATTAGTGCA 57.480 33.333 6.36 0.00 44.97 4.57
1583 10114 5.680229 CGAGATCTTGCATGAAAATTAGTGC 59.320 40.000 6.36 0.00 38.05 4.40
1584 10115 6.685828 CACGAGATCTTGCATGAAAATTAGTG 59.314 38.462 10.09 8.57 0.00 2.74
1587 10118 6.983474 TCACGAGATCTTGCATGAAAATTA 57.017 33.333 10.09 0.00 0.00 1.40
1589 10120 5.885230 TTCACGAGATCTTGCATGAAAAT 57.115 34.783 10.09 0.00 0.00 1.82
1607 10801 8.483218 CAATGTCTGAGTCGATGTTATATTCAC 58.517 37.037 0.00 0.00 0.00 3.18
1616 10810 3.942130 TGACAATGTCTGAGTCGATGT 57.058 42.857 14.97 0.00 35.09 3.06
1625 10819 6.703607 AGTCAACTAAGACTTGACAATGTCTG 59.296 38.462 14.97 9.74 46.26 3.51
1642 10836 8.585881 AGAGTGTTGCTAAATCTTAGTCAACTA 58.414 33.333 21.01 12.59 35.10 2.24
1644 10838 7.659652 AGAGTGTTGCTAAATCTTAGTCAAC 57.340 36.000 17.43 17.43 34.87 3.18
1647 10841 8.030106 AGTGTAGAGTGTTGCTAAATCTTAGTC 58.970 37.037 0.00 0.00 0.00 2.59
1697 10927 4.748892 CTTCAAGTGTCCGACATATCACT 58.251 43.478 4.13 0.00 41.93 3.41
1732 10962 1.732259 CAACAGGACATAGACGTTGCC 59.268 52.381 0.00 0.00 31.53 4.52
1787 11017 9.046296 GTACTACGTACTAGTACCATACAACAT 57.954 37.037 24.06 6.05 46.96 2.71
1808 11038 7.490725 CAGAGACGTTGTAGTAAGCTAGTACTA 59.509 40.741 1.89 1.89 35.85 1.82
1809 11039 6.313411 CAGAGACGTTGTAGTAAGCTAGTACT 59.687 42.308 0.00 0.00 37.98 2.73
1821 11051 1.254026 TGGGTCCAGAGACGTTGTAG 58.746 55.000 0.00 0.00 44.54 2.74
1838 11068 1.202510 GCTAGTCCACAGAGCTGATGG 60.203 57.143 4.21 8.33 34.94 3.51
1880 11110 6.957635 CGAAATAATCAATATGCGATGACCAG 59.042 38.462 0.00 0.00 0.00 4.00
1881 11111 6.648725 TCGAAATAATCAATATGCGATGACCA 59.351 34.615 0.00 0.00 31.00 4.02
1889 11119 8.958043 GTCAAACCTTCGAAATAATCAATATGC 58.042 33.333 0.00 0.00 0.00 3.14
1911 11141 8.313944 TGGGATGTTATTTAGCTAGTAGTCAA 57.686 34.615 0.00 0.00 0.00 3.18
1915 11145 7.233757 ACTCCTGGGATGTTATTTAGCTAGTAG 59.766 40.741 0.00 0.00 0.00 2.57
1916 11146 7.073854 ACTCCTGGGATGTTATTTAGCTAGTA 58.926 38.462 0.00 0.00 0.00 1.82
1917 11147 5.905913 ACTCCTGGGATGTTATTTAGCTAGT 59.094 40.000 0.00 0.00 0.00 2.57
1922 11152 5.630415 TGGACTCCTGGGATGTTATTTAG 57.370 43.478 0.00 0.00 0.00 1.85
1923 11153 5.669904 TCATGGACTCCTGGGATGTTATTTA 59.330 40.000 0.00 0.00 0.00 1.40
1924 11154 4.478317 TCATGGACTCCTGGGATGTTATTT 59.522 41.667 0.00 0.00 0.00 1.40
1926 11156 3.668821 TCATGGACTCCTGGGATGTTAT 58.331 45.455 0.00 0.00 0.00 1.89
1927 11157 3.129262 TCATGGACTCCTGGGATGTTA 57.871 47.619 0.00 0.00 0.00 2.41
1928 11158 1.971149 TCATGGACTCCTGGGATGTT 58.029 50.000 0.00 0.00 0.00 2.71
1929 11159 1.971149 TTCATGGACTCCTGGGATGT 58.029 50.000 0.00 0.00 0.00 3.06
1932 11162 1.289160 CCTTTCATGGACTCCTGGGA 58.711 55.000 0.00 0.00 0.00 4.37
1933 11163 0.995024 ACCTTTCATGGACTCCTGGG 59.005 55.000 0.00 0.00 0.00 4.45
1937 12692 3.884226 GGGACCTTTCATGGACTCC 57.116 57.895 0.00 0.00 0.00 3.85
1955 12710 6.015940 ACAGAAACATTTCCTAAGCTGAAAGG 60.016 38.462 7.80 7.80 38.91 3.11
1956 12711 6.974965 ACAGAAACATTTCCTAAGCTGAAAG 58.025 36.000 0.00 0.00 37.92 2.62
1957 12712 6.959639 ACAGAAACATTTCCTAAGCTGAAA 57.040 33.333 0.00 0.68 37.92 2.69
1958 12713 6.147164 CGTACAGAAACATTTCCTAAGCTGAA 59.853 38.462 0.00 0.00 37.92 3.02
1960 12715 5.163854 CCGTACAGAAACATTTCCTAAGCTG 60.164 44.000 0.68 0.00 37.92 4.24
1961 12716 4.935808 CCGTACAGAAACATTTCCTAAGCT 59.064 41.667 0.68 0.00 37.92 3.74
1962 12717 4.436986 GCCGTACAGAAACATTTCCTAAGC 60.437 45.833 0.68 0.00 37.92 3.09
1965 12720 4.274602 TGCCGTACAGAAACATTTCCTA 57.725 40.909 0.68 0.00 37.92 2.94
1967 12722 3.907894 TTGCCGTACAGAAACATTTCC 57.092 42.857 0.68 0.00 37.92 3.13
1968 12723 3.608073 GCATTGCCGTACAGAAACATTTC 59.392 43.478 0.00 0.00 37.45 2.17
1971 12726 1.472480 GGCATTGCCGTACAGAAACAT 59.528 47.619 12.82 0.00 39.62 2.71
1972 12727 0.878416 GGCATTGCCGTACAGAAACA 59.122 50.000 12.82 0.00 39.62 2.83
1973 12728 3.694889 GGCATTGCCGTACAGAAAC 57.305 52.632 12.82 0.00 39.62 2.78
1996 12751 1.363744 CTTGACCAGCCGAATCACTC 58.636 55.000 0.00 0.00 0.00 3.51
1997 12752 0.674895 GCTTGACCAGCCGAATCACT 60.675 55.000 0.00 0.00 43.65 3.41
1998 12753 1.796796 GCTTGACCAGCCGAATCAC 59.203 57.895 0.00 0.00 43.65 3.06
2017 12772 2.114331 TACTAGATCGCACGGCTCGC 62.114 60.000 0.00 0.00 0.00 5.03
2018 12773 0.384477 GTACTAGATCGCACGGCTCG 60.384 60.000 0.00 0.00 0.00 5.03
2020 12775 1.100510 TTGTACTAGATCGCACGGCT 58.899 50.000 0.00 0.00 0.00 5.52
2021 12776 2.052157 GATTGTACTAGATCGCACGGC 58.948 52.381 0.00 0.00 0.00 5.68
2022 12777 2.286831 ACGATTGTACTAGATCGCACGG 60.287 50.000 19.48 2.70 46.67 4.94
2023 12778 2.714480 CACGATTGTACTAGATCGCACG 59.286 50.000 19.48 5.76 46.67 5.34
2024 12779 3.482472 CACACGATTGTACTAGATCGCAC 59.518 47.826 19.48 0.00 46.67 5.34
2025 12780 3.128068 ACACACGATTGTACTAGATCGCA 59.872 43.478 19.48 0.00 46.67 5.10
2026 12781 3.692576 ACACACGATTGTACTAGATCGC 58.307 45.455 19.48 0.00 46.67 4.58
2028 12783 7.201444 CCAGAAAACACACGATTGTACTAGATC 60.201 40.741 0.00 0.00 33.30 2.75
2031 12786 5.924254 TCCAGAAAACACACGATTGTACTAG 59.076 40.000 0.00 0.00 33.30 2.57
2032 12787 5.693104 GTCCAGAAAACACACGATTGTACTA 59.307 40.000 0.00 0.00 33.30 1.82
2033 12788 4.510340 GTCCAGAAAACACACGATTGTACT 59.490 41.667 0.00 0.00 33.30 2.73
2034 12789 4.607557 CGTCCAGAAAACACACGATTGTAC 60.608 45.833 0.00 0.00 33.30 2.90
2035 12790 3.491639 CGTCCAGAAAACACACGATTGTA 59.508 43.478 0.00 0.00 33.30 2.41
2037 12792 2.286833 ACGTCCAGAAAACACACGATTG 59.713 45.455 0.00 0.00 34.55 2.67
2038 12793 2.557317 ACGTCCAGAAAACACACGATT 58.443 42.857 0.00 0.00 34.55 3.34
2039 12794 2.234300 ACGTCCAGAAAACACACGAT 57.766 45.000 0.00 0.00 34.55 3.73
2040 12795 2.012937 AACGTCCAGAAAACACACGA 57.987 45.000 0.00 0.00 34.55 4.35
2041 12796 2.817538 AAACGTCCAGAAAACACACG 57.182 45.000 0.00 0.00 36.54 4.49
2042 12797 4.492998 CGTAAAAACGTCCAGAAAACACAC 59.507 41.667 0.00 0.00 0.00 3.82
2043 12798 4.649977 CGTAAAAACGTCCAGAAAACACA 58.350 39.130 0.00 0.00 0.00 3.72
2044 12799 3.479590 GCGTAAAAACGTCCAGAAAACAC 59.520 43.478 0.00 0.00 35.26 3.32
2046 12801 2.710460 CGCGTAAAAACGTCCAGAAAAC 59.290 45.455 0.00 0.00 35.26 2.43
2047 12802 2.606725 TCGCGTAAAAACGTCCAGAAAA 59.393 40.909 5.77 0.00 35.26 2.29
2048 12803 2.200067 TCGCGTAAAAACGTCCAGAAA 58.800 42.857 5.77 0.00 35.26 2.52
2049 12804 1.788308 CTCGCGTAAAAACGTCCAGAA 59.212 47.619 5.77 0.00 35.26 3.02
2050 12805 1.001487 TCTCGCGTAAAAACGTCCAGA 60.001 47.619 5.77 0.00 35.26 3.86
2051 12806 1.123756 GTCTCGCGTAAAAACGTCCAG 59.876 52.381 5.77 0.00 35.26 3.86
2052 12807 1.130955 GTCTCGCGTAAAAACGTCCA 58.869 50.000 5.77 0.00 35.26 4.02
2053 12808 1.123756 CTGTCTCGCGTAAAAACGTCC 59.876 52.381 5.77 0.00 35.26 4.79
2054 12809 1.783140 ACTGTCTCGCGTAAAAACGTC 59.217 47.619 5.77 0.00 35.26 4.34
2056 12811 2.916735 AACTGTCTCGCGTAAAAACG 57.083 45.000 5.77 0.00 0.00 3.60
2057 12812 4.580528 TGAAAACTGTCTCGCGTAAAAAC 58.419 39.130 5.77 0.00 0.00 2.43
2059 12814 3.302870 GCTGAAAACTGTCTCGCGTAAAA 60.303 43.478 5.77 0.00 0.00 1.52
2060 12815 2.220133 GCTGAAAACTGTCTCGCGTAAA 59.780 45.455 5.77 0.00 0.00 2.01
2062 12817 1.415374 GCTGAAAACTGTCTCGCGTA 58.585 50.000 5.77 0.00 0.00 4.42
2064 12819 0.946221 AGGCTGAAAACTGTCTCGCG 60.946 55.000 0.00 0.00 0.00 5.87
2065 12820 1.230324 AAGGCTGAAAACTGTCTCGC 58.770 50.000 0.00 0.00 0.00 5.03
2066 12821 3.619038 GGATAAGGCTGAAAACTGTCTCG 59.381 47.826 0.00 0.00 0.00 4.04
2068 12823 4.327680 GTGGATAAGGCTGAAAACTGTCT 58.672 43.478 0.00 0.00 0.00 3.41
2069 12824 3.125316 CGTGGATAAGGCTGAAAACTGTC 59.875 47.826 0.00 0.00 0.00 3.51
2072 12827 2.084546 GCGTGGATAAGGCTGAAAACT 58.915 47.619 0.00 0.00 36.71 2.66
2073 12828 1.810151 TGCGTGGATAAGGCTGAAAAC 59.190 47.619 0.00 0.00 40.43 2.43
2075 12830 2.016318 CATGCGTGGATAAGGCTGAAA 58.984 47.619 0.00 0.00 40.43 2.69
2076 12831 1.209261 TCATGCGTGGATAAGGCTGAA 59.791 47.619 5.98 0.00 40.43 3.02
2077 12832 0.829990 TCATGCGTGGATAAGGCTGA 59.170 50.000 5.98 0.00 40.43 4.26
2078 12833 1.224075 CTCATGCGTGGATAAGGCTG 58.776 55.000 5.98 0.00 40.43 4.85
2079 12834 0.833287 ACTCATGCGTGGATAAGGCT 59.167 50.000 5.98 0.00 40.43 4.58
2080 12835 1.221414 GACTCATGCGTGGATAAGGC 58.779 55.000 5.98 0.00 40.19 4.35
2081 12836 1.491670 CGACTCATGCGTGGATAAGG 58.508 55.000 5.98 0.00 0.00 2.69
2082 12837 0.855349 GCGACTCATGCGTGGATAAG 59.145 55.000 5.98 0.00 0.00 1.73
2084 12839 0.030773 GAGCGACTCATGCGTGGATA 59.969 55.000 5.98 0.00 37.44 2.59
2086 12841 2.181777 GAGCGACTCATGCGTGGA 59.818 61.111 5.98 0.00 37.44 4.02
2087 12842 2.163390 CAGAGCGACTCATGCGTGG 61.163 63.158 5.98 0.00 37.44 4.94
2088 12843 0.527169 ATCAGAGCGACTCATGCGTG 60.527 55.000 0.00 0.00 37.44 5.34
2090 12845 0.938637 GGATCAGAGCGACTCATGCG 60.939 60.000 9.09 0.00 37.44 4.73
2091 12846 0.103755 TGGATCAGAGCGACTCATGC 59.896 55.000 9.09 2.13 32.06 4.06
2092 12847 1.135721 TGTGGATCAGAGCGACTCATG 59.864 52.381 2.32 0.00 32.06 3.07
2097 12852 0.388649 AACGTGTGGATCAGAGCGAC 60.389 55.000 0.00 0.00 0.00 5.19
2099 12854 0.109086 AGAACGTGTGGATCAGAGCG 60.109 55.000 0.00 0.00 0.00 5.03
2100 12855 1.634702 GAGAACGTGTGGATCAGAGC 58.365 55.000 0.00 0.00 0.00 4.09
2101 12856 1.821753 AGGAGAACGTGTGGATCAGAG 59.178 52.381 0.00 0.00 0.00 3.35
2103 12858 1.273606 ACAGGAGAACGTGTGGATCAG 59.726 52.381 0.00 0.00 42.35 2.90
2104 12859 1.272490 GACAGGAGAACGTGTGGATCA 59.728 52.381 0.00 0.00 43.66 2.92
2105 12860 1.272490 TGACAGGAGAACGTGTGGATC 59.728 52.381 0.00 0.00 43.66 3.36
2106 12861 1.338107 TGACAGGAGAACGTGTGGAT 58.662 50.000 0.00 0.00 43.66 3.41
2107 12862 1.272490 GATGACAGGAGAACGTGTGGA 59.728 52.381 0.00 0.00 43.66 4.02
2108 12863 1.273606 AGATGACAGGAGAACGTGTGG 59.726 52.381 0.00 0.00 43.66 4.17
2109 12864 2.600731 GAGATGACAGGAGAACGTGTG 58.399 52.381 0.00 0.00 43.66 3.82
2110 12865 1.546476 GGAGATGACAGGAGAACGTGT 59.454 52.381 0.00 0.00 45.77 4.49
2111 12866 1.821753 AGGAGATGACAGGAGAACGTG 59.178 52.381 0.00 0.00 37.82 4.49
2112 12867 2.223803 AGGAGATGACAGGAGAACGT 57.776 50.000 0.00 0.00 0.00 3.99
2114 12869 3.634910 GAGGTAGGAGATGACAGGAGAAC 59.365 52.174 0.00 0.00 0.00 3.01
2115 12870 3.529734 AGAGGTAGGAGATGACAGGAGAA 59.470 47.826 0.00 0.00 0.00 2.87
2116 12871 3.117701 CAGAGGTAGGAGATGACAGGAGA 60.118 52.174 0.00 0.00 0.00 3.71
2117 12872 3.117701 TCAGAGGTAGGAGATGACAGGAG 60.118 52.174 0.00 0.00 0.00 3.69
2118 12873 2.853077 TCAGAGGTAGGAGATGACAGGA 59.147 50.000 0.00 0.00 0.00 3.86
2122 12877 3.634910 GGAAGTCAGAGGTAGGAGATGAC 59.365 52.174 0.00 0.00 40.41 3.06
2123 12878 3.529734 AGGAAGTCAGAGGTAGGAGATGA 59.470 47.826 0.00 0.00 0.00 2.92
2124 12879 3.909732 AGGAAGTCAGAGGTAGGAGATG 58.090 50.000 0.00 0.00 0.00 2.90
2125 12880 4.017037 TGAAGGAAGTCAGAGGTAGGAGAT 60.017 45.833 0.00 0.00 0.00 2.75
2128 12883 3.827817 TGAAGGAAGTCAGAGGTAGGA 57.172 47.619 0.00 0.00 0.00 2.94
2130 12885 4.714308 AGGAATGAAGGAAGTCAGAGGTAG 59.286 45.833 0.00 0.00 0.00 3.18
2131 12886 4.689062 AGGAATGAAGGAAGTCAGAGGTA 58.311 43.478 0.00 0.00 0.00 3.08
2133 12888 3.517100 TGAGGAATGAAGGAAGTCAGAGG 59.483 47.826 0.00 0.00 0.00 3.69
2134 12889 4.502962 GTGAGGAATGAAGGAAGTCAGAG 58.497 47.826 0.00 0.00 0.00 3.35
2136 12891 3.257393 CGTGAGGAATGAAGGAAGTCAG 58.743 50.000 0.00 0.00 0.00 3.51
2137 12892 3.319137 CGTGAGGAATGAAGGAAGTCA 57.681 47.619 0.00 0.00 0.00 3.41
2156 12911 4.143333 CAGGTAGTGACGCCCCCG 62.143 72.222 0.00 0.00 41.14 5.73
2157 12912 4.468689 GCAGGTAGTGACGCCCCC 62.469 72.222 0.00 0.00 0.00 5.40
2158 12913 3.702048 TGCAGGTAGTGACGCCCC 61.702 66.667 0.00 0.00 0.00 5.80
2159 12914 2.434359 GTGCAGGTAGTGACGCCC 60.434 66.667 0.00 0.00 0.00 6.13
2162 12917 2.372690 GCGTGTGCAGGTAGTGACG 61.373 63.158 0.00 0.00 42.15 4.35
2163 12918 2.027625 GGCGTGTGCAGGTAGTGAC 61.028 63.158 0.00 0.00 45.35 3.67
2165 12920 3.112075 CGGCGTGTGCAGGTAGTG 61.112 66.667 0.00 0.00 45.35 2.74
2200 12955 4.154347 GTGCCCAGCTCTCCCGAG 62.154 72.222 0.00 0.00 40.35 4.63
2202 12957 4.463879 CTGTGCCCAGCTCTCCCG 62.464 72.222 0.00 0.00 0.00 5.14
2203 12958 3.005539 TCTGTGCCCAGCTCTCCC 61.006 66.667 0.00 0.00 38.66 4.30
2204 12959 2.267324 GTCTGTGCCCAGCTCTCC 59.733 66.667 0.00 0.00 38.66 3.71
2205 12960 2.267324 GGTCTGTGCCCAGCTCTC 59.733 66.667 0.00 0.00 38.66 3.20
2213 12968 2.485780 GAAGGGGAAGGGTCTGTGCC 62.486 65.000 0.00 0.00 0.00 5.01
2215 12970 1.685820 GGAAGGGGAAGGGTCTGTG 59.314 63.158 0.00 0.00 0.00 3.66
2217 12972 1.229984 AGGGAAGGGGAAGGGTCTG 60.230 63.158 0.00 0.00 0.00 3.51
2219 12974 2.001838 GGAGGGAAGGGGAAGGGTC 61.002 68.421 0.00 0.00 0.00 4.46
2221 12976 2.696504 GGGAGGGAAGGGGAAGGG 60.697 72.222 0.00 0.00 0.00 3.95
2222 12977 2.696504 GGGGAGGGAAGGGGAAGG 60.697 72.222 0.00 0.00 0.00 3.46
2223 12978 3.090532 CGGGGAGGGAAGGGGAAG 61.091 72.222 0.00 0.00 0.00 3.46
2229 12984 3.995809 TACCTGGCGGGGAGGGAAG 62.996 68.421 18.49 0.00 40.03 3.46
2230 12985 3.995809 CTACCTGGCGGGGAGGGAA 62.996 68.421 17.67 0.00 42.43 3.97
2278 13223 2.324014 TATGGATGTGTGGCCCGCTC 62.324 60.000 0.00 0.00 0.00 5.03
2279 13224 2.329539 CTATGGATGTGTGGCCCGCT 62.330 60.000 0.00 0.00 0.00 5.52
2280 13225 1.893808 CTATGGATGTGTGGCCCGC 60.894 63.158 0.00 0.00 0.00 6.13
2281 13226 1.893808 GCTATGGATGTGTGGCCCG 60.894 63.158 0.00 0.00 0.00 6.13
2285 13230 2.019249 CAACAGGCTATGGATGTGTGG 58.981 52.381 0.00 0.00 0.00 4.17
2286 13231 2.421073 CACAACAGGCTATGGATGTGTG 59.579 50.000 15.65 10.34 41.90 3.82
2287 13232 2.305635 TCACAACAGGCTATGGATGTGT 59.694 45.455 19.55 7.18 44.66 3.72
2288 13233 2.989909 TCACAACAGGCTATGGATGTG 58.010 47.619 16.79 16.79 45.22 3.21
2291 13236 2.648059 GCTTCACAACAGGCTATGGAT 58.352 47.619 4.71 0.00 0.00 3.41
2292 13237 1.340017 GGCTTCACAACAGGCTATGGA 60.340 52.381 4.71 0.00 34.00 3.41
2293 13238 1.098050 GGCTTCACAACAGGCTATGG 58.902 55.000 4.71 0.00 34.00 2.74
2294 13239 2.012673 GAGGCTTCACAACAGGCTATG 58.987 52.381 0.00 0.00 46.71 2.23
2295 13240 1.912043 AGAGGCTTCACAACAGGCTAT 59.088 47.619 0.00 0.00 46.71 2.97
2296 13241 1.276421 GAGAGGCTTCACAACAGGCTA 59.724 52.381 0.00 0.00 46.71 3.93
2299 13244 0.671781 CGGAGAGGCTTCACAACAGG 60.672 60.000 0.00 0.00 0.00 4.00
2300 13245 0.318441 TCGGAGAGGCTTCACAACAG 59.682 55.000 0.00 0.00 0.00 3.16
2301 13246 2.436521 TCGGAGAGGCTTCACAACA 58.563 52.632 0.00 0.00 0.00 3.33
2315 13260 2.435586 GTCGTCGTCTCCCTCGGA 60.436 66.667 0.00 0.00 0.00 4.55
2317 13262 2.113433 ATGGTCGTCGTCTCCCTCG 61.113 63.158 0.00 0.00 0.00 4.63
2319 13264 2.052690 CCATGGTCGTCGTCTCCCT 61.053 63.158 2.57 0.00 0.00 4.20
2321 13266 0.458025 GAACCATGGTCGTCGTCTCC 60.458 60.000 20.07 0.00 0.00 3.71
2322 13267 0.797249 CGAACCATGGTCGTCGTCTC 60.797 60.000 24.63 13.92 0.00 3.36
2324 13269 0.387622 TTCGAACCATGGTCGTCGTC 60.388 55.000 29.08 18.05 32.29 4.20
2325 13270 0.665369 GTTCGAACCATGGTCGTCGT 60.665 55.000 29.08 11.77 32.29 4.34
2326 13271 0.665068 TGTTCGAACCATGGTCGTCG 60.665 55.000 26.26 26.26 31.83 5.12
2327 13272 0.788391 GTGTTCGAACCATGGTCGTC 59.212 55.000 24.78 12.37 0.00 4.20
2330 13275 0.517316 GCTGTGTTCGAACCATGGTC 59.483 55.000 24.78 10.90 0.00 4.02
2332 13277 0.888736 TGGCTGTGTTCGAACCATGG 60.889 55.000 24.78 11.19 0.00 3.66
2335 13280 0.950836 CAATGGCTGTGTTCGAACCA 59.049 50.000 24.78 19.53 34.28 3.67
2336 13281 0.951558 ACAATGGCTGTGTTCGAACC 59.048 50.000 24.78 16.21 36.69 3.62
2337 13282 2.806244 ACTACAATGGCTGTGTTCGAAC 59.194 45.455 21.42 21.42 39.20 3.95
2338 13283 3.120321 ACTACAATGGCTGTGTTCGAA 57.880 42.857 0.00 0.00 39.20 3.71
2339 13284 2.831685 ACTACAATGGCTGTGTTCGA 57.168 45.000 0.00 0.00 39.20 3.71
2340 13285 4.242475 TCTAACTACAATGGCTGTGTTCG 58.758 43.478 0.00 0.00 39.20 3.95
2341 13286 5.065218 CCATCTAACTACAATGGCTGTGTTC 59.935 44.000 0.00 0.00 39.20 3.18
2342 13287 4.943705 CCATCTAACTACAATGGCTGTGTT 59.056 41.667 0.00 1.00 39.20 3.32
2344 13289 4.517285 ACCATCTAACTACAATGGCTGTG 58.483 43.478 0.61 0.00 43.10 3.66
2345 13290 4.225042 TGACCATCTAACTACAATGGCTGT 59.775 41.667 0.61 0.00 43.10 4.40
2348 13293 4.513442 TGTGACCATCTAACTACAATGGC 58.487 43.478 0.61 0.00 43.10 4.40
2350 13295 5.178061 TGCTGTGACCATCTAACTACAATG 58.822 41.667 0.00 0.00 0.00 2.82
2353 13298 4.882842 TTGCTGTGACCATCTAACTACA 57.117 40.909 0.00 0.00 0.00 2.74
2354 13299 6.018669 GCTATTTGCTGTGACCATCTAACTAC 60.019 42.308 0.00 0.00 38.95 2.73
2356 13301 4.878397 GCTATTTGCTGTGACCATCTAACT 59.122 41.667 0.00 0.00 38.95 2.24
2357 13302 5.162000 GCTATTTGCTGTGACCATCTAAC 57.838 43.478 0.00 0.00 38.95 2.34
2374 13319 3.700538 TGCTGGAACCAAATGAGCTATT 58.299 40.909 0.00 0.00 0.00 1.73
2376 13321 2.877097 TGCTGGAACCAAATGAGCTA 57.123 45.000 0.00 0.00 0.00 3.32
2377 13322 1.999648 TTGCTGGAACCAAATGAGCT 58.000 45.000 0.00 0.00 0.00 4.09
2378 13323 2.297033 TCTTTGCTGGAACCAAATGAGC 59.703 45.455 0.00 0.00 32.34 4.26
2379 13324 3.610114 CGTCTTTGCTGGAACCAAATGAG 60.610 47.826 0.00 0.00 32.34 2.90
2381 13326 2.607771 CCGTCTTTGCTGGAACCAAATG 60.608 50.000 0.00 0.00 32.34 2.32
2382 13327 1.613437 CCGTCTTTGCTGGAACCAAAT 59.387 47.619 0.00 0.00 32.34 2.32
2383 13328 1.028905 CCGTCTTTGCTGGAACCAAA 58.971 50.000 0.00 0.00 0.00 3.28
2384 13329 0.106918 ACCGTCTTTGCTGGAACCAA 60.107 50.000 0.00 0.00 0.00 3.67
2385 13330 0.534203 GACCGTCTTTGCTGGAACCA 60.534 55.000 0.00 0.00 0.00 3.67
2386 13331 1.566018 CGACCGTCTTTGCTGGAACC 61.566 60.000 0.00 0.00 0.00 3.62
2387 13332 0.878961 ACGACCGTCTTTGCTGGAAC 60.879 55.000 0.00 0.00 0.00 3.62
2389 13334 1.006571 GACGACCGTCTTTGCTGGA 60.007 57.895 14.52 0.00 41.57 3.86
2390 13335 2.372690 CGACGACCGTCTTTGCTGG 61.373 63.158 18.60 0.00 42.54 4.85
2391 13336 2.372690 CCGACGACCGTCTTTGCTG 61.373 63.158 18.60 3.95 42.54 4.41
2392 13337 2.049433 CCGACGACCGTCTTTGCT 60.049 61.111 18.60 0.00 42.54 3.91
2393 13338 2.355481 ACCGACGACCGTCTTTGC 60.355 61.111 18.60 0.00 42.54 3.68
2395 13340 2.253452 CGACCGACGACCGTCTTT 59.747 61.111 18.60 6.72 45.77 2.52
2402 13347 2.279937 GATTTGCTGCGACCGACGAC 62.280 60.000 0.00 0.00 45.77 4.34
2403 13348 2.048597 ATTTGCTGCGACCGACGA 60.049 55.556 0.00 0.00 45.77 4.20
2404 13349 2.379634 TGATTTGCTGCGACCGACG 61.380 57.895 0.00 0.00 45.66 5.12
2406 13351 2.032634 GGTGATTTGCTGCGACCGA 61.033 57.895 0.00 0.00 0.00 4.69
2407 13352 2.480555 GGTGATTTGCTGCGACCG 59.519 61.111 0.00 0.00 0.00 4.79
2409 13354 1.648467 GGAGGGTGATTTGCTGCGAC 61.648 60.000 0.00 0.00 0.00 5.19
2411 13356 2.409870 GGGAGGGTGATTTGCTGCG 61.410 63.158 0.00 0.00 0.00 5.18
2412 13357 2.409870 CGGGAGGGTGATTTGCTGC 61.410 63.158 0.00 0.00 0.00 5.25
2413 13358 1.002134 ACGGGAGGGTGATTTGCTG 60.002 57.895 0.00 0.00 0.00 4.41
2414 13359 1.299976 GACGGGAGGGTGATTTGCT 59.700 57.895 0.00 0.00 0.00 3.91
2415 13360 2.106683 CGACGGGAGGGTGATTTGC 61.107 63.158 0.00 0.00 0.00 3.68
2416 13361 1.449601 CCGACGGGAGGGTGATTTG 60.450 63.158 5.81 0.00 34.06 2.32
2417 13362 1.611261 TCCGACGGGAGGGTGATTT 60.611 57.895 15.25 0.00 37.43 2.17
2426 13371 1.595929 GTGTTTTGCTCCGACGGGA 60.596 57.895 15.25 0.00 41.08 5.14
2427 13372 2.943653 GTGTTTTGCTCCGACGGG 59.056 61.111 15.25 6.01 0.00 5.28
2429 13374 1.200839 GACGTGTTTTGCTCCGACG 59.799 57.895 0.00 0.00 36.14 5.12
2431 13376 1.155424 GGTGACGTGTTTTGCTCCGA 61.155 55.000 0.00 0.00 0.00 4.55
2432 13377 1.278637 GGTGACGTGTTTTGCTCCG 59.721 57.895 0.00 0.00 0.00 4.63
2433 13378 0.736053 TTGGTGACGTGTTTTGCTCC 59.264 50.000 0.00 0.00 0.00 4.70
2435 13380 2.808244 CAATTGGTGACGTGTTTTGCT 58.192 42.857 0.00 0.00 0.00 3.91
2436 13381 1.257675 GCAATTGGTGACGTGTTTTGC 59.742 47.619 7.72 0.00 0.00 3.68
2438 13383 2.540769 CGAGCAATTGGTGACGTGTTTT 60.541 45.455 16.18 0.00 0.00 2.43
2439 13384 1.002900 CGAGCAATTGGTGACGTGTTT 60.003 47.619 16.18 0.00 0.00 2.83
2442 13387 1.227999 ACCGAGCAATTGGTGACGTG 61.228 55.000 16.18 9.62 37.02 4.49
2443 13388 0.534203 AACCGAGCAATTGGTGACGT 60.534 50.000 16.18 5.00 38.82 4.34
2444 13389 0.165944 GAACCGAGCAATTGGTGACG 59.834 55.000 16.18 12.96 38.82 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.