Multiple sequence alignment - TraesCS2D01G329400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G329400 chr2D 100.000 5967 0 0 1 5967 422762758 422756792 0.000000e+00 11020.0
1 TraesCS2D01G329400 chr2B 93.643 2690 128 22 2817 5480 495146560 495143888 0.000000e+00 3980.0
2 TraesCS2D01G329400 chr2B 97.742 930 20 1 1895 2823 495147673 495146744 0.000000e+00 1600.0
3 TraesCS2D01G329400 chr2B 92.167 932 48 11 795 1726 495148754 495147848 0.000000e+00 1293.0
4 TraesCS2D01G329400 chr2B 94.572 479 21 3 5478 5955 495143840 495143366 0.000000e+00 736.0
5 TraesCS2D01G329400 chr2B 79.537 259 36 10 446 702 728957982 728957739 1.030000e-37 169.0
6 TraesCS2D01G329400 chr2B 82.022 89 11 4 152 240 717002662 717002745 2.980000e-08 71.3
7 TraesCS2D01G329400 chr2B 100.000 29 0 0 3874 3902 495145445 495145417 3.000000e-03 54.7
8 TraesCS2D01G329400 chr2A 95.278 2139 77 7 1895 4028 569202466 569200347 0.000000e+00 3369.0
9 TraesCS2D01G329400 chr2A 94.818 1486 58 8 4012 5480 569199008 569197525 0.000000e+00 2300.0
10 TraesCS2D01G329400 chr2A 93.656 930 39 8 906 1832 569203775 569202863 0.000000e+00 1373.0
11 TraesCS2D01G329400 chr2A 88.618 492 31 12 5478 5967 569197471 569197003 5.190000e-160 575.0
12 TraesCS2D01G329400 chr2A 77.821 257 51 4 475 727 19451806 19451552 2.880000e-33 154.0
13 TraesCS2D01G329400 chr2A 75.445 281 48 12 472 739 533527483 533527755 3.780000e-22 117.0
14 TraesCS2D01G329400 chr5A 78.964 309 42 17 448 746 25862317 25862612 7.890000e-44 189.0
15 TraesCS2D01G329400 chr1A 77.660 282 32 16 466 745 425746321 425746069 6.230000e-30 143.0
16 TraesCS2D01G329400 chr5D 76.384 271 54 9 475 739 399997632 399997366 2.900000e-28 137.0
17 TraesCS2D01G329400 chr3A 75.347 288 62 7 466 745 716801508 716801222 4.850000e-26 130.0
18 TraesCS2D01G329400 chr3A 90.909 44 3 1 113 156 673593513 673593555 2.320000e-04 58.4
19 TraesCS2D01G329400 chr3B 75.433 289 48 18 466 739 16626316 16626596 1.050000e-22 119.0
20 TraesCS2D01G329400 chr6D 75.540 278 47 20 475 739 323051416 323051147 3.780000e-22 117.0
21 TraesCS2D01G329400 chr5B 74.502 251 48 11 466 712 79084183 79083945 1.770000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G329400 chr2D 422756792 422762758 5966 True 11020.00 11020 100.0000 1 5967 1 chr2D.!!$R1 5966
1 TraesCS2D01G329400 chr2B 495143366 495148754 5388 True 1532.74 3980 95.6248 795 5955 5 chr2B.!!$R2 5160
2 TraesCS2D01G329400 chr2A 569197003 569203775 6772 True 1904.25 3369 93.0925 906 5967 4 chr2A.!!$R2 5061

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 515 0.109723 ACGCAAAAACCTAGGCCTGA 59.890 50.000 17.99 0.00 0.00 3.86 F
859 860 0.177141 CCGAGATTTAGGCCCGTTCA 59.823 55.000 0.00 0.00 0.00 3.18 F
1720 1722 0.039165 CGGTAGCTGCATAGATCGCA 60.039 55.000 3.61 0.00 37.88 5.10 F
2152 2491 3.309961 TCATGCAGGATCGATCTTAGC 57.690 47.619 23.96 22.67 0.00 3.09 F
3902 4443 2.081462 CGTATGGTTTGTCCTGGGTTC 58.919 52.381 0.00 0.00 37.07 3.62 F
4930 6832 0.035152 TGGATGCGCTTCAAGATGGT 60.035 50.000 22.93 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1529 0.037975 CTAACAAGGTACACGGCCGT 60.038 55.000 28.7 28.70 0.00 5.68 R
1850 1854 1.852965 CCAATTCTATCCTGGTGGGGT 59.147 52.381 0.0 0.00 35.33 4.95 R
3541 4082 2.708861 TCTACTGGCTGAAACTCCCAAA 59.291 45.455 0.0 0.00 0.00 3.28 R
4116 6018 4.770010 TGCAGGGTTAGGGAAACAAATAAG 59.230 41.667 0.0 0.00 40.08 1.73 R
4942 6844 0.183014 TCCGCCTGGTTTGTTTACCA 59.817 50.000 0.0 0.00 45.73 3.25 R
5943 7931 6.524101 TGTATTCCAGGCCTTTTCAAATAC 57.476 37.500 0.0 12.98 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 7.804843 TGTTACTAAGTATCTCTCTAGGCAC 57.195 40.000 0.00 0.00 0.00 5.01
54 55 6.771749 TGTTACTAAGTATCTCTCTAGGCACC 59.228 42.308 0.00 0.00 0.00 5.01
55 56 4.732065 ACTAAGTATCTCTCTAGGCACCC 58.268 47.826 0.00 0.00 0.00 4.61
56 57 2.687003 AGTATCTCTCTAGGCACCCC 57.313 55.000 0.00 0.00 0.00 4.95
57 58 2.148702 AGTATCTCTCTAGGCACCCCT 58.851 52.381 0.00 0.00 45.61 4.79
58 59 2.109304 AGTATCTCTCTAGGCACCCCTC 59.891 54.545 0.00 0.00 41.75 4.30
59 60 0.937441 ATCTCTCTAGGCACCCCTCA 59.063 55.000 0.00 0.00 41.75 3.86
60 61 0.710588 TCTCTCTAGGCACCCCTCAA 59.289 55.000 0.00 0.00 41.75 3.02
61 62 1.292242 TCTCTCTAGGCACCCCTCAAT 59.708 52.381 0.00 0.00 41.75 2.57
62 63 1.415659 CTCTCTAGGCACCCCTCAATG 59.584 57.143 0.00 0.00 41.75 2.82
63 64 0.471617 CTCTAGGCACCCCTCAATGG 59.528 60.000 0.00 0.00 41.75 3.16
64 65 0.253160 TCTAGGCACCCCTCAATGGT 60.253 55.000 0.00 0.00 41.75 3.55
68 69 4.850193 CACCCCTCAATGGTGCTT 57.150 55.556 0.00 0.00 46.13 3.91
69 70 3.976704 CACCCCTCAATGGTGCTTA 57.023 52.632 0.00 0.00 46.13 3.09
70 71 2.214376 CACCCCTCAATGGTGCTTAA 57.786 50.000 0.00 0.00 46.13 1.85
71 72 2.094675 CACCCCTCAATGGTGCTTAAG 58.905 52.381 0.00 0.00 46.13 1.85
72 73 1.992557 ACCCCTCAATGGTGCTTAAGA 59.007 47.619 6.67 0.00 33.94 2.10
73 74 2.378547 ACCCCTCAATGGTGCTTAAGAA 59.621 45.455 6.67 0.00 33.94 2.52
74 75 3.181423 ACCCCTCAATGGTGCTTAAGAAA 60.181 43.478 6.67 0.00 33.94 2.52
75 76 3.831911 CCCCTCAATGGTGCTTAAGAAAA 59.168 43.478 6.67 0.00 0.00 2.29
76 77 4.467438 CCCCTCAATGGTGCTTAAGAAAAT 59.533 41.667 6.67 0.00 0.00 1.82
77 78 5.046376 CCCCTCAATGGTGCTTAAGAAAATT 60.046 40.000 6.67 0.00 0.00 1.82
78 79 6.466812 CCCTCAATGGTGCTTAAGAAAATTT 58.533 36.000 6.67 0.00 0.00 1.82
79 80 6.936335 CCCTCAATGGTGCTTAAGAAAATTTT 59.064 34.615 6.67 2.28 0.00 1.82
80 81 7.095102 CCCTCAATGGTGCTTAAGAAAATTTTG 60.095 37.037 8.47 2.84 0.00 2.44
81 82 7.095102 CCTCAATGGTGCTTAAGAAAATTTTGG 60.095 37.037 8.47 1.26 0.00 3.28
82 83 7.278875 TCAATGGTGCTTAAGAAAATTTTGGT 58.721 30.769 8.47 0.00 0.00 3.67
83 84 7.772757 TCAATGGTGCTTAAGAAAATTTTGGTT 59.227 29.630 8.47 4.40 0.00 3.67
84 85 8.404765 CAATGGTGCTTAAGAAAATTTTGGTTT 58.595 29.630 8.47 3.02 0.00 3.27
85 86 9.620259 AATGGTGCTTAAGAAAATTTTGGTTTA 57.380 25.926 8.47 2.09 0.00 2.01
86 87 9.791801 ATGGTGCTTAAGAAAATTTTGGTTTAT 57.208 25.926 8.47 0.00 0.00 1.40
87 88 9.620259 TGGTGCTTAAGAAAATTTTGGTTTATT 57.380 25.926 8.47 0.00 0.00 1.40
98 99 8.528917 AAATTTTGGTTTATTTTACCGAGAGC 57.471 30.769 0.00 0.00 38.55 4.09
99 100 6.636562 TTTTGGTTTATTTTACCGAGAGCA 57.363 33.333 0.00 0.00 38.55 4.26
100 101 6.827586 TTTGGTTTATTTTACCGAGAGCAT 57.172 33.333 0.00 0.00 38.55 3.79
101 102 5.811399 TGGTTTATTTTACCGAGAGCATG 57.189 39.130 0.00 0.00 38.55 4.06
102 103 4.638421 TGGTTTATTTTACCGAGAGCATGG 59.362 41.667 0.00 0.00 38.55 3.66
103 104 4.638865 GGTTTATTTTACCGAGAGCATGGT 59.361 41.667 0.00 0.00 42.34 3.55
104 105 5.124936 GGTTTATTTTACCGAGAGCATGGTT 59.875 40.000 0.00 0.00 39.70 3.67
105 106 6.316890 GGTTTATTTTACCGAGAGCATGGTTA 59.683 38.462 0.00 0.00 39.70 2.85
106 107 7.148205 GGTTTATTTTACCGAGAGCATGGTTAA 60.148 37.037 0.00 0.00 39.70 2.01
107 108 8.403236 GTTTATTTTACCGAGAGCATGGTTAAT 58.597 33.333 0.00 0.00 39.70 1.40
108 109 9.616156 TTTATTTTACCGAGAGCATGGTTAATA 57.384 29.630 0.00 0.00 39.70 0.98
109 110 7.730364 ATTTTACCGAGAGCATGGTTAATAG 57.270 36.000 0.00 0.00 39.70 1.73
110 111 5.864418 TTACCGAGAGCATGGTTAATAGT 57.136 39.130 0.00 0.00 39.70 2.12
111 112 6.964807 TTACCGAGAGCATGGTTAATAGTA 57.035 37.500 0.00 0.00 39.70 1.82
112 113 7.534723 TTACCGAGAGCATGGTTAATAGTAT 57.465 36.000 0.00 0.00 39.70 2.12
113 114 6.420913 ACCGAGAGCATGGTTAATAGTATT 57.579 37.500 0.00 0.17 33.81 1.89
114 115 6.223852 ACCGAGAGCATGGTTAATAGTATTG 58.776 40.000 5.61 0.00 33.81 1.90
115 116 5.639506 CCGAGAGCATGGTTAATAGTATTGG 59.360 44.000 5.61 0.00 0.00 3.16
116 117 5.120830 CGAGAGCATGGTTAATAGTATTGGC 59.879 44.000 5.61 0.00 0.00 4.52
117 118 6.192970 AGAGCATGGTTAATAGTATTGGCT 57.807 37.500 5.61 5.04 0.00 4.75
118 119 6.000219 AGAGCATGGTTAATAGTATTGGCTG 59.000 40.000 5.61 0.00 0.00 4.85
119 120 5.694995 AGCATGGTTAATAGTATTGGCTGT 58.305 37.500 5.61 0.00 0.00 4.40
120 121 6.837312 AGCATGGTTAATAGTATTGGCTGTA 58.163 36.000 5.61 0.00 0.00 2.74
121 122 7.461749 AGCATGGTTAATAGTATTGGCTGTAT 58.538 34.615 5.61 0.00 0.00 2.29
122 123 7.391554 AGCATGGTTAATAGTATTGGCTGTATG 59.608 37.037 5.61 4.59 0.00 2.39
123 124 7.390440 GCATGGTTAATAGTATTGGCTGTATGA 59.610 37.037 5.61 0.00 0.00 2.15
124 125 9.453572 CATGGTTAATAGTATTGGCTGTATGAT 57.546 33.333 5.61 0.00 0.00 2.45
133 134 8.557592 AGTATTGGCTGTATGATATTGTCATG 57.442 34.615 6.19 0.00 46.85 3.07
134 135 8.159447 AGTATTGGCTGTATGATATTGTCATGT 58.841 33.333 6.19 0.00 46.85 3.21
135 136 6.866010 TTGGCTGTATGATATTGTCATGTC 57.134 37.500 6.19 1.16 46.85 3.06
136 137 5.927819 TGGCTGTATGATATTGTCATGTCA 58.072 37.500 6.19 5.04 46.85 3.58
137 138 6.536447 TGGCTGTATGATATTGTCATGTCAT 58.464 36.000 6.19 0.00 46.85 3.06
138 139 6.652062 TGGCTGTATGATATTGTCATGTCATC 59.348 38.462 6.19 2.37 46.85 2.92
139 140 6.877855 GGCTGTATGATATTGTCATGTCATCT 59.122 38.462 6.19 0.00 46.85 2.90
140 141 8.037166 GGCTGTATGATATTGTCATGTCATCTA 58.963 37.037 6.19 0.00 46.85 1.98
141 142 9.597170 GCTGTATGATATTGTCATGTCATCTAT 57.403 33.333 6.19 0.00 46.85 1.98
151 152 9.896645 ATTGTCATGTCATCTATAGTCAAGTTT 57.103 29.630 0.00 0.00 0.00 2.66
160 161 9.982651 TCATCTATAGTCAAGTTTATAGTTGGC 57.017 33.333 0.00 0.00 39.17 4.52
161 162 9.764363 CATCTATAGTCAAGTTTATAGTTGGCA 57.236 33.333 7.88 0.00 40.91 4.92
163 164 9.817809 TCTATAGTCAAGTTTATAGTTGGCAAG 57.182 33.333 0.00 3.23 40.91 4.01
164 165 9.601217 CTATAGTCAAGTTTATAGTTGGCAAGT 57.399 33.333 12.91 12.91 40.91 3.16
168 169 9.953565 AGTCAAGTTTATAGTTGGCAAGTATAA 57.046 29.630 30.24 30.24 40.91 0.98
218 219 9.924650 ATAGTTTATTAATACATGGACCGACTC 57.075 33.333 0.00 0.00 0.00 3.36
219 220 7.788026 AGTTTATTAATACATGGACCGACTCA 58.212 34.615 0.00 0.00 0.00 3.41
220 221 7.709613 AGTTTATTAATACATGGACCGACTCAC 59.290 37.037 0.00 0.00 0.00 3.51
221 222 5.871396 ATTAATACATGGACCGACTCACT 57.129 39.130 0.00 0.00 0.00 3.41
222 223 3.802948 AATACATGGACCGACTCACTC 57.197 47.619 0.00 0.00 0.00 3.51
223 224 2.509166 TACATGGACCGACTCACTCT 57.491 50.000 0.00 0.00 0.00 3.24
224 225 1.178276 ACATGGACCGACTCACTCTC 58.822 55.000 0.00 0.00 0.00 3.20
225 226 1.272203 ACATGGACCGACTCACTCTCT 60.272 52.381 0.00 0.00 0.00 3.10
226 227 1.403679 CATGGACCGACTCACTCTCTC 59.596 57.143 0.00 0.00 0.00 3.20
227 228 0.400594 TGGACCGACTCACTCTCTCA 59.599 55.000 0.00 0.00 0.00 3.27
228 229 1.004862 TGGACCGACTCACTCTCTCAT 59.995 52.381 0.00 0.00 0.00 2.90
229 230 2.238898 TGGACCGACTCACTCTCTCATA 59.761 50.000 0.00 0.00 0.00 2.15
230 231 3.280295 GGACCGACTCACTCTCTCATAA 58.720 50.000 0.00 0.00 0.00 1.90
231 232 3.695060 GGACCGACTCACTCTCTCATAAA 59.305 47.826 0.00 0.00 0.00 1.40
232 233 4.158025 GGACCGACTCACTCTCTCATAAAA 59.842 45.833 0.00 0.00 0.00 1.52
233 234 5.163499 GGACCGACTCACTCTCTCATAAAAT 60.163 44.000 0.00 0.00 0.00 1.82
234 235 5.897050 ACCGACTCACTCTCTCATAAAATC 58.103 41.667 0.00 0.00 0.00 2.17
235 236 5.654650 ACCGACTCACTCTCTCATAAAATCT 59.345 40.000 0.00 0.00 0.00 2.40
236 237 6.153680 ACCGACTCACTCTCTCATAAAATCTT 59.846 38.462 0.00 0.00 0.00 2.40
237 238 7.038659 CCGACTCACTCTCTCATAAAATCTTT 58.961 38.462 0.00 0.00 0.00 2.52
238 239 8.191446 CCGACTCACTCTCTCATAAAATCTTTA 58.809 37.037 0.00 0.00 0.00 1.85
239 240 9.232082 CGACTCACTCTCTCATAAAATCTTTAG 57.768 37.037 0.00 0.00 0.00 1.85
256 257 9.988350 AAATCTTTAGATGTATTACGTGCTTTG 57.012 29.630 0.00 0.00 34.49 2.77
257 258 8.718102 ATCTTTAGATGTATTACGTGCTTTGT 57.282 30.769 0.00 0.00 32.68 2.83
258 259 9.811995 ATCTTTAGATGTATTACGTGCTTTGTA 57.188 29.630 0.00 0.00 32.68 2.41
259 260 9.297586 TCTTTAGATGTATTACGTGCTTTGTAG 57.702 33.333 0.00 0.00 0.00 2.74
268 269 4.303257 GCTTTGTAGCCCGCTTCT 57.697 55.556 0.00 0.00 41.74 2.85
269 270 2.090693 GCTTTGTAGCCCGCTTCTC 58.909 57.895 0.00 0.00 41.74 2.87
270 271 0.391793 GCTTTGTAGCCCGCTTCTCT 60.392 55.000 0.00 0.00 41.74 3.10
271 272 1.946283 GCTTTGTAGCCCGCTTCTCTT 60.946 52.381 0.00 0.00 41.74 2.85
272 273 2.003301 CTTTGTAGCCCGCTTCTCTTC 58.997 52.381 0.00 0.00 0.00 2.87
273 274 1.267121 TTGTAGCCCGCTTCTCTTCT 58.733 50.000 0.00 0.00 0.00 2.85
274 275 0.818296 TGTAGCCCGCTTCTCTTCTC 59.182 55.000 0.00 0.00 0.00 2.87
275 276 1.107945 GTAGCCCGCTTCTCTTCTCT 58.892 55.000 0.00 0.00 0.00 3.10
276 277 1.478916 GTAGCCCGCTTCTCTTCTCTT 59.521 52.381 0.00 0.00 0.00 2.85
277 278 0.980423 AGCCCGCTTCTCTTCTCTTT 59.020 50.000 0.00 0.00 0.00 2.52
278 279 1.349357 AGCCCGCTTCTCTTCTCTTTT 59.651 47.619 0.00 0.00 0.00 2.27
279 280 1.735018 GCCCGCTTCTCTTCTCTTTTC 59.265 52.381 0.00 0.00 0.00 2.29
280 281 2.872038 GCCCGCTTCTCTTCTCTTTTCA 60.872 50.000 0.00 0.00 0.00 2.69
281 282 3.403038 CCCGCTTCTCTTCTCTTTTCAA 58.597 45.455 0.00 0.00 0.00 2.69
282 283 3.434984 CCCGCTTCTCTTCTCTTTTCAAG 59.565 47.826 0.00 0.00 0.00 3.02
283 284 3.120373 CCGCTTCTCTTCTCTTTTCAAGC 60.120 47.826 0.00 0.00 33.04 4.01
284 285 3.496130 CGCTTCTCTTCTCTTTTCAAGCA 59.504 43.478 0.00 0.00 35.54 3.91
285 286 4.024556 CGCTTCTCTTCTCTTTTCAAGCAA 60.025 41.667 0.00 0.00 35.54 3.91
286 287 5.504665 CGCTTCTCTTCTCTTTTCAAGCAAA 60.505 40.000 0.00 0.00 35.54 3.68
287 288 6.268566 GCTTCTCTTCTCTTTTCAAGCAAAA 58.731 36.000 0.00 0.00 35.81 2.44
288 289 6.922407 GCTTCTCTTCTCTTTTCAAGCAAAAT 59.078 34.615 0.00 0.00 35.81 1.82
289 290 8.078596 GCTTCTCTTCTCTTTTCAAGCAAAATA 58.921 33.333 0.00 0.00 35.81 1.40
291 292 9.903682 TTCTCTTCTCTTTTCAAGCAAAATATG 57.096 29.630 0.00 0.00 33.34 1.78
292 293 9.071276 TCTCTTCTCTTTTCAAGCAAAATATGT 57.929 29.630 0.00 0.00 33.34 2.29
293 294 9.688592 CTCTTCTCTTTTCAAGCAAAATATGTT 57.311 29.630 0.00 0.00 33.34 2.71
315 316 9.886132 ATGTTATCTAAAGACTTACAATCCGTT 57.114 29.630 0.00 0.00 0.00 4.44
316 317 9.715121 TGTTATCTAAAGACTTACAATCCGTTT 57.285 29.630 0.00 0.00 0.00 3.60
320 321 8.193250 TCTAAAGACTTACAATCCGTTTATGC 57.807 34.615 0.00 0.00 0.00 3.14
321 322 5.813080 AAGACTTACAATCCGTTTATGCC 57.187 39.130 0.00 0.00 0.00 4.40
322 323 4.839121 AGACTTACAATCCGTTTATGCCA 58.161 39.130 0.00 0.00 0.00 4.92
323 324 4.634443 AGACTTACAATCCGTTTATGCCAC 59.366 41.667 0.00 0.00 0.00 5.01
324 325 3.692593 ACTTACAATCCGTTTATGCCACC 59.307 43.478 0.00 0.00 0.00 4.61
325 326 2.507407 ACAATCCGTTTATGCCACCT 57.493 45.000 0.00 0.00 0.00 4.00
326 327 2.802719 ACAATCCGTTTATGCCACCTT 58.197 42.857 0.00 0.00 0.00 3.50
327 328 3.958018 ACAATCCGTTTATGCCACCTTA 58.042 40.909 0.00 0.00 0.00 2.69
328 329 4.532834 ACAATCCGTTTATGCCACCTTAT 58.467 39.130 0.00 0.00 0.00 1.73
329 330 4.953579 ACAATCCGTTTATGCCACCTTATT 59.046 37.500 0.00 0.00 0.00 1.40
330 331 6.123651 ACAATCCGTTTATGCCACCTTATTA 58.876 36.000 0.00 0.00 0.00 0.98
331 332 6.775629 ACAATCCGTTTATGCCACCTTATTAT 59.224 34.615 0.00 0.00 0.00 1.28
332 333 7.940137 ACAATCCGTTTATGCCACCTTATTATA 59.060 33.333 0.00 0.00 0.00 0.98
333 334 7.916914 ATCCGTTTATGCCACCTTATTATAC 57.083 36.000 0.00 0.00 0.00 1.47
334 335 7.069877 TCCGTTTATGCCACCTTATTATACT 57.930 36.000 0.00 0.00 0.00 2.12
335 336 7.511268 TCCGTTTATGCCACCTTATTATACTT 58.489 34.615 0.00 0.00 0.00 2.24
336 337 7.442969 TCCGTTTATGCCACCTTATTATACTTG 59.557 37.037 0.00 0.00 0.00 3.16
337 338 7.075741 CGTTTATGCCACCTTATTATACTTGC 58.924 38.462 0.00 0.00 0.00 4.01
338 339 7.041372 CGTTTATGCCACCTTATTATACTTGCT 60.041 37.037 0.00 0.00 0.00 3.91
339 340 7.979444 TTATGCCACCTTATTATACTTGCTC 57.021 36.000 0.00 0.00 0.00 4.26
340 341 5.630415 TGCCACCTTATTATACTTGCTCT 57.370 39.130 0.00 0.00 0.00 4.09
341 342 6.740944 TGCCACCTTATTATACTTGCTCTA 57.259 37.500 0.00 0.00 0.00 2.43
342 343 7.131907 TGCCACCTTATTATACTTGCTCTAA 57.868 36.000 0.00 0.00 0.00 2.10
343 344 7.217200 TGCCACCTTATTATACTTGCTCTAAG 58.783 38.462 0.00 0.00 42.30 2.18
344 345 6.147985 GCCACCTTATTATACTTGCTCTAAGC 59.852 42.308 0.00 0.00 42.82 3.09
360 361 6.511416 GCTCTAAGCATCTCTTTAGTCATCA 58.489 40.000 0.00 0.00 41.89 3.07
361 362 7.153985 GCTCTAAGCATCTCTTTAGTCATCAT 58.846 38.462 0.00 0.00 41.89 2.45
362 363 7.116662 GCTCTAAGCATCTCTTTAGTCATCATG 59.883 40.741 0.00 0.00 41.89 3.07
363 364 6.927936 TCTAAGCATCTCTTTAGTCATCATGC 59.072 38.462 0.00 0.00 36.25 4.06
364 365 4.387598 AGCATCTCTTTAGTCATCATGCC 58.612 43.478 0.00 0.00 36.61 4.40
365 366 4.102838 AGCATCTCTTTAGTCATCATGCCT 59.897 41.667 0.00 0.00 36.61 4.75
366 367 4.451774 GCATCTCTTTAGTCATCATGCCTC 59.548 45.833 0.00 0.00 30.98 4.70
367 368 5.742546 GCATCTCTTTAGTCATCATGCCTCT 60.743 44.000 0.00 0.00 30.98 3.69
368 369 5.946942 TCTCTTTAGTCATCATGCCTCTT 57.053 39.130 0.00 0.00 0.00 2.85
369 370 7.440198 CATCTCTTTAGTCATCATGCCTCTTA 58.560 38.462 0.00 0.00 0.00 2.10
370 371 6.810911 TCTCTTTAGTCATCATGCCTCTTAC 58.189 40.000 0.00 0.00 0.00 2.34
371 372 6.609212 TCTCTTTAGTCATCATGCCTCTTACT 59.391 38.462 0.00 0.00 0.00 2.24
372 373 7.780271 TCTCTTTAGTCATCATGCCTCTTACTA 59.220 37.037 0.00 0.00 0.00 1.82
373 374 8.484214 TCTTTAGTCATCATGCCTCTTACTAT 57.516 34.615 0.00 0.00 0.00 2.12
374 375 8.363390 TCTTTAGTCATCATGCCTCTTACTATG 58.637 37.037 0.00 0.00 0.00 2.23
375 376 4.892433 AGTCATCATGCCTCTTACTATGC 58.108 43.478 0.00 0.00 0.00 3.14
376 377 4.346127 AGTCATCATGCCTCTTACTATGCA 59.654 41.667 0.00 0.00 38.23 3.96
377 378 5.059161 GTCATCATGCCTCTTACTATGCAA 58.941 41.667 0.00 0.00 37.27 4.08
378 379 5.528690 GTCATCATGCCTCTTACTATGCAAA 59.471 40.000 0.00 0.00 37.27 3.68
379 380 6.206243 GTCATCATGCCTCTTACTATGCAAAT 59.794 38.462 0.00 0.00 37.27 2.32
380 381 6.774170 TCATCATGCCTCTTACTATGCAAATT 59.226 34.615 0.00 0.00 37.27 1.82
381 382 7.938490 TCATCATGCCTCTTACTATGCAAATTA 59.062 33.333 0.00 0.00 37.27 1.40
382 383 7.734924 TCATGCCTCTTACTATGCAAATTAG 57.265 36.000 0.00 0.00 37.27 1.73
383 384 7.508687 TCATGCCTCTTACTATGCAAATTAGA 58.491 34.615 0.00 0.00 37.27 2.10
384 385 7.992608 TCATGCCTCTTACTATGCAAATTAGAA 59.007 33.333 0.00 0.00 37.27 2.10
385 386 8.623903 CATGCCTCTTACTATGCAAATTAGAAA 58.376 33.333 0.00 0.00 37.27 2.52
386 387 8.752005 TGCCTCTTACTATGCAAATTAGAAAT 57.248 30.769 0.00 0.00 0.00 2.17
387 388 9.189156 TGCCTCTTACTATGCAAATTAGAAATT 57.811 29.630 0.00 0.00 0.00 1.82
388 389 9.455847 GCCTCTTACTATGCAAATTAGAAATTG 57.544 33.333 0.00 0.00 0.00 2.32
389 390 9.956720 CCTCTTACTATGCAAATTAGAAATTGG 57.043 33.333 0.00 0.00 0.00 3.16
392 393 9.956720 CTTACTATGCAAATTAGAAATTGGAGG 57.043 33.333 0.00 0.00 30.27 4.30
393 394 7.352079 ACTATGCAAATTAGAAATTGGAGGG 57.648 36.000 0.00 0.00 30.27 4.30
394 395 7.125391 ACTATGCAAATTAGAAATTGGAGGGA 58.875 34.615 0.00 0.00 30.27 4.20
395 396 6.872585 ATGCAAATTAGAAATTGGAGGGAA 57.127 33.333 0.00 0.00 30.27 3.97
396 397 6.036577 TGCAAATTAGAAATTGGAGGGAAC 57.963 37.500 0.00 0.00 0.00 3.62
397 398 5.541868 TGCAAATTAGAAATTGGAGGGAACA 59.458 36.000 0.00 0.00 0.00 3.18
398 399 6.213195 TGCAAATTAGAAATTGGAGGGAACAT 59.787 34.615 0.00 0.00 0.00 2.71
399 400 6.758416 GCAAATTAGAAATTGGAGGGAACATC 59.242 38.462 0.00 0.00 0.00 3.06
400 401 7.267857 CAAATTAGAAATTGGAGGGAACATCC 58.732 38.462 0.00 0.00 37.35 3.51
433 434 8.990163 TTAGTCCATGTAAAAGTTCCTTTTCT 57.010 30.769 5.30 0.00 41.88 2.52
434 435 7.898014 AGTCCATGTAAAAGTTCCTTTTCTT 57.102 32.000 5.30 0.00 41.88 2.52
435 436 8.306313 AGTCCATGTAAAAGTTCCTTTTCTTT 57.694 30.769 5.30 0.00 41.88 2.52
436 437 9.416284 AGTCCATGTAAAAGTTCCTTTTCTTTA 57.584 29.630 5.30 0.00 41.88 1.85
437 438 9.678941 GTCCATGTAAAAGTTCCTTTTCTTTAG 57.321 33.333 5.30 0.00 41.88 1.85
438 439 8.856103 TCCATGTAAAAGTTCCTTTTCTTTAGG 58.144 33.333 5.30 4.21 41.88 2.69
439 440 8.856103 CCATGTAAAAGTTCCTTTTCTTTAGGA 58.144 33.333 5.30 0.00 41.88 2.94
440 441 9.899226 CATGTAAAAGTTCCTTTTCTTTAGGAG 57.101 33.333 5.30 0.00 41.88 3.69
441 442 9.642343 ATGTAAAAGTTCCTTTTCTTTAGGAGT 57.358 29.630 5.30 0.00 41.88 3.85
442 443 9.470399 TGTAAAAGTTCCTTTTCTTTAGGAGTT 57.530 29.630 5.30 0.00 41.88 3.01
445 446 9.470399 AAAAGTTCCTTTTCTTTAGGAGTTACA 57.530 29.630 0.00 0.00 39.10 2.41
446 447 8.678593 AAGTTCCTTTTCTTTAGGAGTTACAG 57.321 34.615 0.00 0.00 42.51 2.74
447 448 7.225011 AGTTCCTTTTCTTTAGGAGTTACAGG 58.775 38.462 0.00 0.00 42.51 4.00
448 449 6.758806 TCCTTTTCTTTAGGAGTTACAGGT 57.241 37.500 0.00 0.00 36.88 4.00
449 450 7.860649 TCCTTTTCTTTAGGAGTTACAGGTA 57.139 36.000 0.00 0.00 36.88 3.08
450 451 8.445361 TCCTTTTCTTTAGGAGTTACAGGTAT 57.555 34.615 0.00 0.00 36.88 2.73
451 452 9.551339 TCCTTTTCTTTAGGAGTTACAGGTATA 57.449 33.333 0.00 0.00 36.88 1.47
452 453 9.819267 CCTTTTCTTTAGGAGTTACAGGTATAG 57.181 37.037 0.00 0.00 34.56 1.31
453 454 9.315525 CTTTTCTTTAGGAGTTACAGGTATAGC 57.684 37.037 0.00 0.00 0.00 2.97
454 455 8.605325 TTTCTTTAGGAGTTACAGGTATAGCT 57.395 34.615 0.00 0.00 0.00 3.32
455 456 7.584122 TCTTTAGGAGTTACAGGTATAGCTG 57.416 40.000 26.44 26.44 0.00 4.24
456 457 6.550108 TCTTTAGGAGTTACAGGTATAGCTGG 59.450 42.308 30.01 15.64 0.00 4.85
457 458 2.966516 AGGAGTTACAGGTATAGCTGGC 59.033 50.000 30.01 20.60 0.00 4.85
458 459 2.037381 GGAGTTACAGGTATAGCTGGCC 59.963 54.545 30.01 19.83 0.00 5.36
459 460 2.698797 GAGTTACAGGTATAGCTGGCCA 59.301 50.000 30.01 4.71 0.00 5.36
460 461 3.318313 AGTTACAGGTATAGCTGGCCAT 58.682 45.455 30.01 15.30 0.00 4.40
461 462 3.325135 AGTTACAGGTATAGCTGGCCATC 59.675 47.826 30.01 17.24 0.00 3.51
462 463 1.059913 ACAGGTATAGCTGGCCATCC 58.940 55.000 30.01 0.00 0.00 3.51
463 464 1.059098 CAGGTATAGCTGGCCATCCA 58.941 55.000 21.78 0.00 40.85 3.41
464 465 1.632409 CAGGTATAGCTGGCCATCCAT 59.368 52.381 21.78 0.00 42.51 3.41
465 466 1.912043 AGGTATAGCTGGCCATCCATC 59.088 52.381 5.51 0.00 42.51 3.51
466 467 1.406069 GGTATAGCTGGCCATCCATCG 60.406 57.143 5.51 0.00 42.51 3.84
467 468 0.904649 TATAGCTGGCCATCCATCGG 59.095 55.000 5.51 0.00 42.51 4.18
468 469 1.845627 ATAGCTGGCCATCCATCGGG 61.846 60.000 5.51 0.00 42.51 5.14
473 474 2.192979 GCCATCCATCGGGCTTCA 59.807 61.111 0.00 0.00 46.74 3.02
474 475 1.895707 GCCATCCATCGGGCTTCAG 60.896 63.158 0.00 0.00 46.74 3.02
475 476 1.228063 CCATCCATCGGGCTTCAGG 60.228 63.158 0.00 0.00 0.00 3.86
476 477 1.895707 CATCCATCGGGCTTCAGGC 60.896 63.158 0.00 0.00 40.90 4.85
492 493 4.426313 GCCGGGCCTACCAAAGCT 62.426 66.667 8.12 0.00 40.22 3.74
493 494 2.124695 CCGGGCCTACCAAAGCTC 60.125 66.667 0.84 0.00 40.22 4.09
495 496 2.987125 GGGCCTACCAAAGCTCGA 59.013 61.111 0.84 0.00 39.85 4.04
496 497 1.449778 GGGCCTACCAAAGCTCGAC 60.450 63.158 0.84 0.00 39.85 4.20
497 498 1.810030 GGCCTACCAAAGCTCGACG 60.810 63.158 0.00 0.00 35.26 5.12
498 499 2.453638 GCCTACCAAAGCTCGACGC 61.454 63.158 0.00 0.00 39.57 5.19
499 500 1.080093 CCTACCAAAGCTCGACGCA 60.080 57.895 9.09 0.00 42.61 5.24
500 501 0.669318 CCTACCAAAGCTCGACGCAA 60.669 55.000 9.09 0.00 42.61 4.85
501 502 1.144969 CTACCAAAGCTCGACGCAAA 58.855 50.000 9.09 0.00 42.61 3.68
502 503 1.529438 CTACCAAAGCTCGACGCAAAA 59.471 47.619 9.09 0.00 42.61 2.44
503 504 0.736053 ACCAAAGCTCGACGCAAAAA 59.264 45.000 9.09 0.00 42.61 1.94
504 505 1.120437 CCAAAGCTCGACGCAAAAAC 58.880 50.000 9.09 0.00 42.61 2.43
505 506 1.120437 CAAAGCTCGACGCAAAAACC 58.880 50.000 9.09 0.00 42.61 3.27
506 507 1.021968 AAAGCTCGACGCAAAAACCT 58.978 45.000 9.09 0.00 42.61 3.50
507 508 1.873698 AAGCTCGACGCAAAAACCTA 58.126 45.000 9.09 0.00 42.61 3.08
508 509 1.429463 AGCTCGACGCAAAAACCTAG 58.571 50.000 9.09 0.00 42.61 3.02
509 510 0.442699 GCTCGACGCAAAAACCTAGG 59.557 55.000 7.41 7.41 38.92 3.02
510 511 0.442699 CTCGACGCAAAAACCTAGGC 59.557 55.000 9.30 0.00 0.00 3.93
511 512 0.952010 TCGACGCAAAAACCTAGGCC 60.952 55.000 9.30 0.00 0.00 5.19
512 513 0.953960 CGACGCAAAAACCTAGGCCT 60.954 55.000 11.78 11.78 0.00 5.19
513 514 0.521735 GACGCAAAAACCTAGGCCTG 59.478 55.000 17.99 0.87 0.00 4.85
514 515 0.109723 ACGCAAAAACCTAGGCCTGA 59.890 50.000 17.99 0.00 0.00 3.86
515 516 0.804989 CGCAAAAACCTAGGCCTGAG 59.195 55.000 17.99 9.15 0.00 3.35
516 517 0.528017 GCAAAAACCTAGGCCTGAGC 59.472 55.000 17.99 4.42 38.76 4.26
544 545 3.162448 CCGTCGGGCCTAAAATTCA 57.838 52.632 2.34 0.00 0.00 2.57
545 546 1.014352 CCGTCGGGCCTAAAATTCAG 58.986 55.000 2.34 0.00 0.00 3.02
546 547 1.014352 CGTCGGGCCTAAAATTCAGG 58.986 55.000 0.84 2.32 36.16 3.86
553 554 2.967599 CCTAAAATTCAGGCCCAAGC 57.032 50.000 0.00 0.00 38.76 4.01
554 555 2.460669 CCTAAAATTCAGGCCCAAGCT 58.539 47.619 0.00 0.00 39.73 3.74
555 556 2.428530 CCTAAAATTCAGGCCCAAGCTC 59.571 50.000 0.00 0.00 39.73 4.09
556 557 0.890683 AAAATTCAGGCCCAAGCTCG 59.109 50.000 0.00 0.00 39.73 5.03
557 558 0.967380 AAATTCAGGCCCAAGCTCGG 60.967 55.000 0.00 0.00 39.73 4.63
558 559 4.722700 TTCAGGCCCAAGCTCGGC 62.723 66.667 14.98 14.98 46.29 5.54
566 567 4.335647 CAAGCTCGGCCCACCAGT 62.336 66.667 0.00 0.00 34.57 4.00
567 568 4.021925 AAGCTCGGCCCACCAGTC 62.022 66.667 0.00 0.00 34.57 3.51
569 570 4.329545 GCTCGGCCCACCAGTCAA 62.330 66.667 0.00 0.00 34.57 3.18
570 571 2.429930 CTCGGCCCACCAGTCAAA 59.570 61.111 0.00 0.00 34.57 2.69
571 572 1.228124 CTCGGCCCACCAGTCAAAA 60.228 57.895 0.00 0.00 34.57 2.44
572 573 0.609131 CTCGGCCCACCAGTCAAAAT 60.609 55.000 0.00 0.00 34.57 1.82
573 574 0.893270 TCGGCCCACCAGTCAAAATG 60.893 55.000 0.00 0.00 34.57 2.32
574 575 1.178534 CGGCCCACCAGTCAAAATGT 61.179 55.000 0.00 0.00 34.57 2.71
575 576 0.603065 GGCCCACCAGTCAAAATGTC 59.397 55.000 0.00 0.00 35.26 3.06
576 577 1.620822 GCCCACCAGTCAAAATGTCT 58.379 50.000 0.00 0.00 0.00 3.41
577 578 1.270550 GCCCACCAGTCAAAATGTCTG 59.729 52.381 0.00 0.00 34.16 3.51
578 579 2.586425 CCCACCAGTCAAAATGTCTGT 58.414 47.619 4.41 0.00 32.84 3.41
579 580 2.958355 CCCACCAGTCAAAATGTCTGTT 59.042 45.455 4.41 0.00 32.84 3.16
580 581 3.243501 CCCACCAGTCAAAATGTCTGTTG 60.244 47.826 4.41 0.88 32.84 3.33
581 582 3.243501 CCACCAGTCAAAATGTCTGTTGG 60.244 47.826 6.75 6.75 38.95 3.77
582 583 2.958355 ACCAGTCAAAATGTCTGTTGGG 59.042 45.455 4.41 0.00 32.84 4.12
583 584 2.288395 CCAGTCAAAATGTCTGTTGGGC 60.288 50.000 4.41 0.00 32.84 5.36
584 585 1.963515 AGTCAAAATGTCTGTTGGGCC 59.036 47.619 0.00 0.00 0.00 5.80
585 586 1.963515 GTCAAAATGTCTGTTGGGCCT 59.036 47.619 4.53 0.00 0.00 5.19
586 587 2.365293 GTCAAAATGTCTGTTGGGCCTT 59.635 45.455 4.53 0.00 0.00 4.35
587 588 2.364970 TCAAAATGTCTGTTGGGCCTTG 59.635 45.455 4.53 0.00 0.00 3.61
588 589 1.341080 AAATGTCTGTTGGGCCTTGG 58.659 50.000 4.53 0.00 0.00 3.61
589 590 0.542702 AATGTCTGTTGGGCCTTGGG 60.543 55.000 4.53 0.00 0.00 4.12
599 600 2.757099 GCCTTGGGCCATGGTCTG 60.757 66.667 32.12 13.19 44.06 3.51
616 617 4.893829 GTCTGGACCTCTTCCTTAAAGT 57.106 45.455 0.00 0.00 46.10 2.66
617 618 4.570930 GTCTGGACCTCTTCCTTAAAGTG 58.429 47.826 0.00 0.00 46.10 3.16
618 619 3.008049 TCTGGACCTCTTCCTTAAAGTGC 59.992 47.826 0.00 0.00 46.10 4.40
619 620 2.708861 TGGACCTCTTCCTTAAAGTGCA 59.291 45.455 0.00 0.00 46.10 4.57
620 621 3.137544 TGGACCTCTTCCTTAAAGTGCAA 59.862 43.478 0.00 0.00 46.10 4.08
621 622 4.142038 GGACCTCTTCCTTAAAGTGCAAA 58.858 43.478 0.00 0.00 41.95 3.68
622 623 4.767409 GGACCTCTTCCTTAAAGTGCAAAT 59.233 41.667 0.00 0.00 41.95 2.32
623 624 5.944007 GGACCTCTTCCTTAAAGTGCAAATA 59.056 40.000 0.00 0.00 41.95 1.40
624 625 6.127980 GGACCTCTTCCTTAAAGTGCAAATAC 60.128 42.308 0.00 0.00 41.95 1.89
625 626 5.411669 ACCTCTTCCTTAAAGTGCAAATACG 59.588 40.000 0.00 0.00 36.31 3.06
626 627 5.642063 CCTCTTCCTTAAAGTGCAAATACGA 59.358 40.000 0.00 0.00 36.31 3.43
627 628 6.316390 CCTCTTCCTTAAAGTGCAAATACGAT 59.684 38.462 0.00 0.00 36.31 3.73
628 629 7.072177 TCTTCCTTAAAGTGCAAATACGATG 57.928 36.000 0.00 0.00 36.31 3.84
629 630 5.811399 TCCTTAAAGTGCAAATACGATGG 57.189 39.130 0.00 0.00 0.00 3.51
630 631 4.638421 TCCTTAAAGTGCAAATACGATGGG 59.362 41.667 0.00 0.00 0.00 4.00
631 632 2.939460 AAAGTGCAAATACGATGGGC 57.061 45.000 0.00 0.00 0.00 5.36
632 633 1.102978 AAGTGCAAATACGATGGGCC 58.897 50.000 0.00 0.00 0.00 5.80
633 634 0.255890 AGTGCAAATACGATGGGCCT 59.744 50.000 4.53 0.00 0.00 5.19
634 635 0.381801 GTGCAAATACGATGGGCCTG 59.618 55.000 4.53 0.00 0.00 4.85
635 636 0.254462 TGCAAATACGATGGGCCTGA 59.746 50.000 4.53 0.00 0.00 3.86
636 637 0.947244 GCAAATACGATGGGCCTGAG 59.053 55.000 4.53 0.00 0.00 3.35
637 638 0.947244 CAAATACGATGGGCCTGAGC 59.053 55.000 4.53 0.00 38.76 4.26
661 662 4.294523 CGACCATCGGGCTCAAAA 57.705 55.556 0.00 0.00 36.00 2.44
662 663 2.780595 CGACCATCGGGCTCAAAAT 58.219 52.632 0.00 0.00 36.00 1.82
663 664 0.657840 CGACCATCGGGCTCAAAATC 59.342 55.000 0.00 0.00 36.00 2.17
664 665 1.743772 CGACCATCGGGCTCAAAATCT 60.744 52.381 0.00 0.00 36.00 2.40
665 666 2.483013 CGACCATCGGGCTCAAAATCTA 60.483 50.000 0.00 0.00 36.00 1.98
666 667 3.134458 GACCATCGGGCTCAAAATCTAG 58.866 50.000 0.00 0.00 37.90 2.43
667 668 2.158755 ACCATCGGGCTCAAAATCTAGG 60.159 50.000 0.00 0.00 37.90 3.02
668 669 1.876156 CATCGGGCTCAAAATCTAGGC 59.124 52.381 0.00 0.00 37.55 3.93
673 674 3.133141 GGCTCAAAATCTAGGCCTAGG 57.867 52.381 34.43 20.53 39.68 3.02
674 675 2.439880 GGCTCAAAATCTAGGCCTAGGT 59.560 50.000 34.43 28.33 39.68 3.08
675 676 3.495276 GGCTCAAAATCTAGGCCTAGGTC 60.495 52.174 34.43 17.53 39.68 3.85
676 677 3.800604 GCTCAAAATCTAGGCCTAGGTCG 60.801 52.174 34.43 21.48 34.06 4.79
677 678 2.698797 TCAAAATCTAGGCCTAGGTCGG 59.301 50.000 34.43 21.86 34.06 4.79
684 685 4.208686 GCCTAGGTCGGCCTGTCG 62.209 72.222 21.58 6.67 46.47 4.35
685 686 3.528370 CCTAGGTCGGCCTGTCGG 61.528 72.222 21.58 12.76 46.47 4.79
695 696 4.760047 CCTGTCGGCAAGGTCGGG 62.760 72.222 0.00 0.00 0.00 5.14
696 697 4.003788 CTGTCGGCAAGGTCGGGT 62.004 66.667 0.00 0.00 0.00 5.28
697 698 3.934391 CTGTCGGCAAGGTCGGGTC 62.934 68.421 0.00 0.00 0.00 4.46
698 699 3.998672 GTCGGCAAGGTCGGGTCA 61.999 66.667 0.00 0.00 0.00 4.02
699 700 3.691342 TCGGCAAGGTCGGGTCAG 61.691 66.667 0.00 0.00 0.00 3.51
700 701 4.760047 CGGCAAGGTCGGGTCAGG 62.760 72.222 0.00 0.00 0.00 3.86
703 704 3.636231 CAAGGTCGGGTCAGGCCA 61.636 66.667 5.01 0.00 38.64 5.36
704 705 3.322466 AAGGTCGGGTCAGGCCAG 61.322 66.667 5.01 0.00 38.64 4.85
707 708 4.083862 GTCGGGTCAGGCCAGGTC 62.084 72.222 5.01 0.00 39.65 3.85
718 719 3.263941 CCAGGTCGGGCTTTTTCG 58.736 61.111 0.00 0.00 0.00 3.46
719 720 2.332654 CCAGGTCGGGCTTTTTCGG 61.333 63.158 0.00 0.00 0.00 4.30
720 721 2.033602 AGGTCGGGCTTTTTCGGG 59.966 61.111 0.00 0.00 0.00 5.14
721 722 3.744719 GGTCGGGCTTTTTCGGGC 61.745 66.667 0.00 0.00 0.00 6.13
722 723 3.744719 GTCGGGCTTTTTCGGGCC 61.745 66.667 0.00 0.00 46.89 5.80
728 729 3.747976 CTTTTTCGGGCCGGGCTG 61.748 66.667 30.31 30.31 0.00 4.85
745 746 4.379174 GCCCATGGCCACGTATAG 57.621 61.111 8.16 0.00 44.06 1.31
746 747 1.450211 GCCCATGGCCACGTATAGT 59.550 57.895 8.16 0.00 44.06 2.12
747 748 0.179029 GCCCATGGCCACGTATAGTT 60.179 55.000 8.16 0.00 44.06 2.24
748 749 1.878953 CCCATGGCCACGTATAGTTC 58.121 55.000 8.16 0.00 0.00 3.01
749 750 1.542547 CCCATGGCCACGTATAGTTCC 60.543 57.143 8.16 0.00 0.00 3.62
750 751 1.140052 CCATGGCCACGTATAGTTCCA 59.860 52.381 8.16 0.00 37.33 3.53
751 752 2.483876 CATGGCCACGTATAGTTCCAG 58.516 52.381 8.16 0.00 36.67 3.86
752 753 0.828022 TGGCCACGTATAGTTCCAGG 59.172 55.000 0.00 0.00 31.66 4.45
753 754 0.828677 GGCCACGTATAGTTCCAGGT 59.171 55.000 0.00 0.00 0.00 4.00
754 755 2.034124 GGCCACGTATAGTTCCAGGTA 58.966 52.381 0.00 0.00 0.00 3.08
755 756 2.431782 GGCCACGTATAGTTCCAGGTAA 59.568 50.000 0.00 0.00 0.00 2.85
756 757 3.118665 GGCCACGTATAGTTCCAGGTAAA 60.119 47.826 0.00 0.00 0.00 2.01
757 758 3.867493 GCCACGTATAGTTCCAGGTAAAC 59.133 47.826 0.00 0.00 0.00 2.01
758 759 4.621274 GCCACGTATAGTTCCAGGTAAACA 60.621 45.833 0.00 0.00 0.00 2.83
759 760 5.667466 CCACGTATAGTTCCAGGTAAACAT 58.333 41.667 0.00 0.00 0.00 2.71
760 761 6.110707 CCACGTATAGTTCCAGGTAAACATT 58.889 40.000 0.00 0.00 0.00 2.71
761 762 6.257193 CCACGTATAGTTCCAGGTAAACATTC 59.743 42.308 0.00 0.00 0.00 2.67
762 763 6.257193 CACGTATAGTTCCAGGTAAACATTCC 59.743 42.308 0.00 0.00 0.00 3.01
763 764 6.155737 ACGTATAGTTCCAGGTAAACATTCCT 59.844 38.462 0.00 0.00 33.96 3.36
764 765 7.342799 ACGTATAGTTCCAGGTAAACATTCCTA 59.657 37.037 0.00 0.00 32.26 2.94
765 766 8.199449 CGTATAGTTCCAGGTAAACATTCCTAA 58.801 37.037 0.00 0.00 32.26 2.69
766 767 9.543783 GTATAGTTCCAGGTAAACATTCCTAAG 57.456 37.037 0.00 0.00 32.26 2.18
767 768 6.697641 AGTTCCAGGTAAACATTCCTAAGA 57.302 37.500 0.00 0.00 32.26 2.10
768 769 7.086685 AGTTCCAGGTAAACATTCCTAAGAA 57.913 36.000 0.00 0.00 36.15 2.52
769 770 7.523415 AGTTCCAGGTAAACATTCCTAAGAAA 58.477 34.615 0.00 0.00 35.09 2.52
770 771 7.665974 AGTTCCAGGTAAACATTCCTAAGAAAG 59.334 37.037 0.00 0.00 35.09 2.62
771 772 7.324388 TCCAGGTAAACATTCCTAAGAAAGA 57.676 36.000 0.00 0.00 35.09 2.52
772 773 7.751646 TCCAGGTAAACATTCCTAAGAAAGAA 58.248 34.615 0.00 0.00 35.09 2.52
773 774 7.883311 TCCAGGTAAACATTCCTAAGAAAGAAG 59.117 37.037 0.00 0.00 35.09 2.85
774 775 7.883311 CCAGGTAAACATTCCTAAGAAAGAAGA 59.117 37.037 0.00 0.00 35.09 2.87
775 776 9.454859 CAGGTAAACATTCCTAAGAAAGAAGAT 57.545 33.333 0.00 0.00 35.09 2.40
859 860 0.177141 CCGAGATTTAGGCCCGTTCA 59.823 55.000 0.00 0.00 0.00 3.18
864 865 3.945285 GAGATTTAGGCCCGTTCAATGAA 59.055 43.478 0.00 0.00 0.00 2.57
865 866 4.536765 AGATTTAGGCCCGTTCAATGAAT 58.463 39.130 0.00 0.00 0.00 2.57
866 867 4.580580 AGATTTAGGCCCGTTCAATGAATC 59.419 41.667 0.00 0.00 0.00 2.52
867 868 2.341846 TAGGCCCGTTCAATGAATCC 57.658 50.000 0.00 0.00 0.00 3.01
872 873 2.680805 GCCCGTTCAATGAATCCTCTCA 60.681 50.000 0.00 0.00 0.00 3.27
882 883 1.625818 GAATCCTCTCATACGGGCCAT 59.374 52.381 4.39 0.00 0.00 4.40
883 884 1.734655 ATCCTCTCATACGGGCCATT 58.265 50.000 4.39 0.00 0.00 3.16
884 885 1.507140 TCCTCTCATACGGGCCATTT 58.493 50.000 4.39 0.00 0.00 2.32
885 886 1.140852 TCCTCTCATACGGGCCATTTG 59.859 52.381 4.39 0.00 0.00 2.32
898 899 0.246635 CCATTTGTCGACTCGGACCT 59.753 55.000 17.92 0.00 36.07 3.85
899 900 1.337823 CCATTTGTCGACTCGGACCTT 60.338 52.381 17.92 0.00 36.07 3.50
900 901 1.993370 CATTTGTCGACTCGGACCTTC 59.007 52.381 17.92 0.00 36.07 3.46
901 902 1.034356 TTTGTCGACTCGGACCTTCA 58.966 50.000 17.92 0.00 36.07 3.02
902 903 0.596577 TTGTCGACTCGGACCTTCAG 59.403 55.000 17.92 0.00 36.07 3.02
903 904 1.241990 TGTCGACTCGGACCTTCAGG 61.242 60.000 17.92 0.00 42.17 3.86
904 905 1.677966 TCGACTCGGACCTTCAGGG 60.678 63.158 0.00 0.00 40.27 4.45
915 916 1.377725 CTTCAGGGCTTCACGGCAT 60.378 57.895 0.00 0.00 40.61 4.40
1275 1276 3.649277 GATGAGCGGCGTCACCAGT 62.649 63.158 9.37 0.00 39.03 4.00
1413 1414 2.686816 CGCCAAATCCGCCTTCGTT 61.687 57.895 0.00 0.00 0.00 3.85
1428 1429 4.101790 GTTGCCCATCCGTGCGTG 62.102 66.667 0.00 0.00 0.00 5.34
1444 1445 1.507141 CGTGCCCGCACTTTTCTTCT 61.507 55.000 17.14 0.00 44.16 2.85
1461 1462 0.898789 TCTTCCGTCCTCTCCACCAC 60.899 60.000 0.00 0.00 0.00 4.16
1469 1470 3.025262 GTCCTCTCCACCACTACCTAAG 58.975 54.545 0.00 0.00 0.00 2.18
1495 1496 4.255833 CGCCCCCGTTTACTATATTGTA 57.744 45.455 0.00 0.00 0.00 2.41
1496 1497 3.989817 CGCCCCCGTTTACTATATTGTAC 59.010 47.826 0.00 0.00 0.00 2.90
1497 1498 4.262164 CGCCCCCGTTTACTATATTGTACT 60.262 45.833 0.00 0.00 0.00 2.73
1528 1529 4.878968 TCATTGGTCCTAGACATCCACTA 58.121 43.478 0.00 0.00 33.68 2.74
1543 1544 0.734942 CACTACGGCCGTGTACCTTG 60.735 60.000 40.02 21.68 0.00 3.61
1591 1592 3.137533 GGCATTAGCTTCCAGTGATCTC 58.862 50.000 0.00 0.00 41.70 2.75
1670 1671 5.476945 AGCACTTATAAGACCTTGTTTTGGG 59.523 40.000 19.38 0.00 0.00 4.12
1672 1673 5.476945 CACTTATAAGACCTTGTTTTGGGCT 59.523 40.000 19.38 0.00 46.74 5.19
1702 1704 8.904099 ATCCCTTGTTATCTAATAAAAGACCG 57.096 34.615 0.00 0.00 0.00 4.79
1716 1718 2.002505 AGACCGGTAGCTGCATAGAT 57.997 50.000 7.34 0.00 0.00 1.98
1717 1719 1.889829 AGACCGGTAGCTGCATAGATC 59.110 52.381 7.34 0.00 0.00 2.75
1718 1720 0.598562 ACCGGTAGCTGCATAGATCG 59.401 55.000 4.49 0.00 0.00 3.69
1719 1721 0.734253 CCGGTAGCTGCATAGATCGC 60.734 60.000 3.61 0.00 0.00 4.58
1720 1722 0.039165 CGGTAGCTGCATAGATCGCA 60.039 55.000 3.61 0.00 37.88 5.10
1805 1809 7.933577 TCAAGAACAACTGATGTAGAATGACTT 59.066 33.333 0.00 0.00 42.99 3.01
1817 1821 5.580691 TGTAGAATGACTTACAAGGAATGCG 59.419 40.000 0.00 0.00 0.00 4.73
1820 1824 5.473504 AGAATGACTTACAAGGAATGCGTTT 59.526 36.000 0.00 0.00 0.00 3.60
1823 1827 4.759693 TGACTTACAAGGAATGCGTTTCAT 59.240 37.500 0.00 0.00 35.94 2.57
1828 1832 7.604927 ACTTACAAGGAATGCGTTTCATACTTA 59.395 33.333 0.00 0.00 35.94 2.24
1836 1840 8.690840 GGAATGCGTTTCATACTTATTTTATGC 58.309 33.333 0.00 0.00 35.94 3.14
1858 1862 4.383552 GCAAAATTATAATGCACCCCACCA 60.384 41.667 0.00 0.00 39.81 4.17
1881 1885 7.072454 ACCAGGATAGAATTGGTATAGCTCAAA 59.928 37.037 3.20 0.00 43.15 2.69
2080 2419 5.938125 AGGTGACATCATTTACCTGTAACAC 59.062 40.000 0.00 0.00 41.76 3.32
2152 2491 3.309961 TCATGCAGGATCGATCTTAGC 57.690 47.619 23.96 22.67 0.00 3.09
2738 3078 4.881920 TGATGTATGTGGATGTGGATACG 58.118 43.478 0.00 0.00 42.51 3.06
2899 3429 6.035843 CCTCATGTATGTTTGTACATTTGGC 58.964 40.000 0.00 0.00 42.29 4.52
2988 3518 5.833131 TGGTAAGACAATTTTCTTGCTTCCT 59.167 36.000 18.10 0.00 38.07 3.36
3095 3629 3.453717 TGCTTCTATCTGCTGGATTCACT 59.546 43.478 0.00 0.00 35.98 3.41
3096 3630 4.080695 TGCTTCTATCTGCTGGATTCACTT 60.081 41.667 0.00 0.00 35.98 3.16
3211 3745 9.640963 GATGTGTATAATCATTACTCCAGTACC 57.359 37.037 0.00 0.00 0.00 3.34
3313 3847 7.337167 ACAGAAAGATGTGCAAGAAGATCTAT 58.663 34.615 0.00 0.00 30.44 1.98
3521 4062 5.526479 ACTGAGATGATGTTTTCCGATCATG 59.474 40.000 0.00 0.00 39.03 3.07
3522 4063 4.818005 TGAGATGATGTTTTCCGATCATGG 59.182 41.667 0.00 0.00 39.03 3.66
3523 4064 5.039920 AGATGATGTTTTCCGATCATGGA 57.960 39.130 0.00 0.00 39.03 3.41
3524 4065 5.439721 AGATGATGTTTTCCGATCATGGAA 58.560 37.500 0.00 0.00 46.12 3.53
3902 4443 2.081462 CGTATGGTTTGTCCTGGGTTC 58.919 52.381 0.00 0.00 37.07 3.62
3929 4470 9.601971 TTCATATTTTACGTGCTTCTTTACAAC 57.398 29.630 0.00 0.00 0.00 3.32
3985 4531 4.371624 TCCTGACCAGTGATGTTTTGAT 57.628 40.909 0.00 0.00 0.00 2.57
3998 4544 7.445096 AGTGATGTTTTGATGTACTCACAATCA 59.555 33.333 8.30 0.00 38.42 2.57
4286 6188 8.285891 AGGAGAACCTAGAGATGAATAAGAAGA 58.714 37.037 0.00 0.00 45.83 2.87
4364 6266 1.751351 TGCGTACTGGAATGGAGAGAG 59.249 52.381 0.00 0.00 0.00 3.20
4504 6406 1.019805 GCCCAGCTTCAGTAACGACC 61.020 60.000 0.00 0.00 0.00 4.79
4846 6748 1.676006 GCGCATACCTTGGTAAAGCAT 59.324 47.619 19.92 0.00 31.51 3.79
4859 6761 1.999648 AAAGCATGCAGAAGGAACCA 58.000 45.000 21.98 0.00 0.00 3.67
4865 6767 1.999648 TGCAGAAGGAACCAAGCATT 58.000 45.000 0.00 0.00 0.00 3.56
4930 6832 0.035152 TGGATGCGCTTCAAGATGGT 60.035 50.000 22.93 0.00 0.00 3.55
4939 6841 5.239744 TGCGCTTCAAGATGGTAAAACTTTA 59.760 36.000 9.73 0.00 0.00 1.85
4942 6844 7.328493 GCGCTTCAAGATGGTAAAACTTTATTT 59.672 33.333 0.00 0.00 0.00 1.40
4945 6847 9.981114 CTTCAAGATGGTAAAACTTTATTTGGT 57.019 29.630 0.00 0.00 0.00 3.67
4990 6892 6.363065 ACTAACATGGATTACTCTCCGAGTA 58.637 40.000 0.00 0.00 41.51 2.59
5090 6999 2.605257 TGCTACTCCACCACTGTAACT 58.395 47.619 0.00 0.00 0.00 2.24
5132 7041 2.455674 ACTGACGCAGCAATGACTTA 57.544 45.000 6.74 0.00 34.37 2.24
5238 7162 7.038154 TCTGAAGTTCATGGGTTAAAAACTG 57.962 36.000 5.91 0.00 30.95 3.16
5258 7182 4.591498 ACTGACACAACCCAGATTAGTACA 59.409 41.667 0.00 0.00 34.65 2.90
5352 7277 3.392947 TGGATGGTGACTAAAACAGACCA 59.607 43.478 0.00 0.00 40.89 4.02
5355 7280 3.146066 TGGTGACTAAAACAGACCATGC 58.854 45.455 0.00 0.00 31.64 4.06
5396 7325 3.818773 GCCAAAGTTCTAGCCAACTACAA 59.181 43.478 0.00 0.00 35.45 2.41
5434 7363 3.864243 ACATTGGCCAAAATATGTGCAG 58.136 40.909 24.71 4.97 30.51 4.41
5495 7480 0.827089 TGGAATGTTGCACTGTGGGG 60.827 55.000 10.21 0.00 0.00 4.96
5503 7488 1.034838 TGCACTGTGGGGTGTTGTTC 61.035 55.000 10.21 0.00 39.21 3.18
5508 7493 0.811915 TGTGGGGTGTTGTTCGTTTG 59.188 50.000 0.00 0.00 0.00 2.93
5526 7511 2.452600 TGGGTTTGCTTCTTCACCTT 57.547 45.000 0.00 0.00 0.00 3.50
5527 7512 2.745968 TGGGTTTGCTTCTTCACCTTT 58.254 42.857 0.00 0.00 0.00 3.11
5552 7537 1.139498 TGGCCCCATTTGTCAGAGGA 61.139 55.000 0.00 0.00 0.00 3.71
5598 7583 0.411452 TTGGTGGGGTGGCATACATT 59.589 50.000 0.00 0.00 0.00 2.71
5651 7636 5.771469 TGAGAATTTGCGTCATGTGAAAAT 58.229 33.333 0.00 0.00 0.00 1.82
5657 7642 3.580731 TGCGTCATGTGAAAATCGTCTA 58.419 40.909 0.00 0.00 0.00 2.59
5669 7654 9.087424 TGTGAAAATCGTCTAGATGTAAATCAG 57.913 33.333 11.71 0.00 40.02 2.90
5712 7697 5.140747 ACAGAAGACTAACCAGCTTACTG 57.859 43.478 0.00 0.00 44.05 2.74
5759 7744 0.321298 ATCTACACCAACGCCCACAC 60.321 55.000 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.504708 GTGCCTAGAGAGATACTTAGTAACATA 57.495 37.037 0.00 0.00 0.00 2.29
28 29 7.449086 GGTGCCTAGAGAGATACTTAGTAACAT 59.551 40.741 0.00 0.00 0.00 2.71
29 30 6.771749 GGTGCCTAGAGAGATACTTAGTAACA 59.228 42.308 0.00 0.00 0.00 2.41
30 31 6.207221 GGGTGCCTAGAGAGATACTTAGTAAC 59.793 46.154 0.00 0.00 0.00 2.50
31 32 6.305411 GGGTGCCTAGAGAGATACTTAGTAA 58.695 44.000 0.00 0.00 0.00 2.24
32 33 5.222089 GGGGTGCCTAGAGAGATACTTAGTA 60.222 48.000 0.00 0.00 0.00 1.82
33 34 4.448054 GGGGTGCCTAGAGAGATACTTAGT 60.448 50.000 0.00 0.00 0.00 2.24
34 35 4.083565 GGGGTGCCTAGAGAGATACTTAG 58.916 52.174 0.00 0.00 0.00 2.18
35 36 3.727923 AGGGGTGCCTAGAGAGATACTTA 59.272 47.826 0.00 0.00 0.00 2.24
36 37 2.520549 AGGGGTGCCTAGAGAGATACTT 59.479 50.000 0.00 0.00 0.00 2.24
37 38 2.109304 GAGGGGTGCCTAGAGAGATACT 59.891 54.545 0.00 0.00 0.00 2.12
38 39 2.158445 TGAGGGGTGCCTAGAGAGATAC 60.158 54.545 0.00 0.00 0.00 2.24
39 40 2.144450 TGAGGGGTGCCTAGAGAGATA 58.856 52.381 0.00 0.00 0.00 1.98
40 41 0.937441 TGAGGGGTGCCTAGAGAGAT 59.063 55.000 0.00 0.00 0.00 2.75
41 42 0.710588 TTGAGGGGTGCCTAGAGAGA 59.289 55.000 0.00 0.00 0.00 3.10
42 43 1.415659 CATTGAGGGGTGCCTAGAGAG 59.584 57.143 0.00 0.00 0.00 3.20
43 44 1.500474 CATTGAGGGGTGCCTAGAGA 58.500 55.000 0.00 0.00 0.00 3.10
44 45 0.471617 CCATTGAGGGGTGCCTAGAG 59.528 60.000 0.00 0.00 0.00 2.43
45 46 0.253160 ACCATTGAGGGGTGCCTAGA 60.253 55.000 0.00 0.00 43.89 2.43
46 47 2.311287 ACCATTGAGGGGTGCCTAG 58.689 57.895 0.00 0.00 43.89 3.02
47 48 4.599860 ACCATTGAGGGGTGCCTA 57.400 55.556 0.00 0.00 43.89 3.93
52 53 1.992557 TCTTAAGCACCATTGAGGGGT 59.007 47.619 0.00 0.00 45.35 4.95
53 54 2.806945 TCTTAAGCACCATTGAGGGG 57.193 50.000 0.00 0.00 46.82 4.79
54 55 5.665916 ATTTTCTTAAGCACCATTGAGGG 57.334 39.130 0.00 0.00 43.89 4.30
55 56 7.095102 CCAAAATTTTCTTAAGCACCATTGAGG 60.095 37.037 0.00 0.00 45.67 3.86
56 57 7.442062 ACCAAAATTTTCTTAAGCACCATTGAG 59.558 33.333 0.00 0.00 0.00 3.02
57 58 7.278875 ACCAAAATTTTCTTAAGCACCATTGA 58.721 30.769 0.00 0.00 0.00 2.57
58 59 7.495135 ACCAAAATTTTCTTAAGCACCATTG 57.505 32.000 0.00 0.00 0.00 2.82
59 60 8.518430 AAACCAAAATTTTCTTAAGCACCATT 57.482 26.923 0.00 0.00 0.00 3.16
60 61 9.791801 ATAAACCAAAATTTTCTTAAGCACCAT 57.208 25.926 0.00 0.00 0.00 3.55
61 62 9.620259 AATAAACCAAAATTTTCTTAAGCACCA 57.380 25.926 0.00 0.00 0.00 4.17
72 73 8.984764 GCTCTCGGTAAAATAAACCAAAATTTT 58.015 29.630 0.00 0.00 38.49 1.82
73 74 8.145122 TGCTCTCGGTAAAATAAACCAAAATTT 58.855 29.630 0.00 0.00 36.78 1.82
74 75 7.662897 TGCTCTCGGTAAAATAAACCAAAATT 58.337 30.769 0.00 0.00 36.78 1.82
75 76 7.222000 TGCTCTCGGTAAAATAAACCAAAAT 57.778 32.000 0.00 0.00 36.78 1.82
76 77 6.636562 TGCTCTCGGTAAAATAAACCAAAA 57.363 33.333 0.00 0.00 36.78 2.44
77 78 6.349777 CCATGCTCTCGGTAAAATAAACCAAA 60.350 38.462 0.00 0.00 36.78 3.28
78 79 5.124776 CCATGCTCTCGGTAAAATAAACCAA 59.875 40.000 0.00 0.00 36.78 3.67
79 80 4.638421 CCATGCTCTCGGTAAAATAAACCA 59.362 41.667 0.00 0.00 36.78 3.67
80 81 4.638865 ACCATGCTCTCGGTAAAATAAACC 59.361 41.667 0.00 0.00 32.31 3.27
81 82 5.813080 ACCATGCTCTCGGTAAAATAAAC 57.187 39.130 0.00 0.00 32.31 2.01
82 83 7.925043 TTAACCATGCTCTCGGTAAAATAAA 57.075 32.000 0.00 0.00 33.17 1.40
83 84 9.268268 CTATTAACCATGCTCTCGGTAAAATAA 57.732 33.333 0.00 0.00 33.17 1.40
84 85 8.426489 ACTATTAACCATGCTCTCGGTAAAATA 58.574 33.333 0.00 0.00 33.17 1.40
85 86 7.280356 ACTATTAACCATGCTCTCGGTAAAAT 58.720 34.615 0.00 0.00 33.17 1.82
86 87 6.646267 ACTATTAACCATGCTCTCGGTAAAA 58.354 36.000 0.00 0.00 33.17 1.52
87 88 6.229936 ACTATTAACCATGCTCTCGGTAAA 57.770 37.500 0.00 0.00 33.17 2.01
88 89 5.864418 ACTATTAACCATGCTCTCGGTAA 57.136 39.130 0.00 0.00 33.17 2.85
89 90 7.375834 CAATACTATTAACCATGCTCTCGGTA 58.624 38.462 0.00 0.00 33.17 4.02
90 91 6.223852 CAATACTATTAACCATGCTCTCGGT 58.776 40.000 0.00 0.00 36.98 4.69
91 92 5.639506 CCAATACTATTAACCATGCTCTCGG 59.360 44.000 0.00 0.00 0.00 4.63
92 93 5.120830 GCCAATACTATTAACCATGCTCTCG 59.879 44.000 0.00 0.00 0.00 4.04
93 94 6.148480 CAGCCAATACTATTAACCATGCTCTC 59.852 42.308 0.00 0.00 0.00 3.20
94 95 6.000219 CAGCCAATACTATTAACCATGCTCT 59.000 40.000 0.00 0.00 0.00 4.09
95 96 5.765182 ACAGCCAATACTATTAACCATGCTC 59.235 40.000 0.00 0.00 0.00 4.26
96 97 5.694995 ACAGCCAATACTATTAACCATGCT 58.305 37.500 0.00 0.00 0.00 3.79
97 98 7.390440 TCATACAGCCAATACTATTAACCATGC 59.610 37.037 0.00 0.00 0.00 4.06
98 99 8.846943 TCATACAGCCAATACTATTAACCATG 57.153 34.615 0.00 0.00 0.00 3.66
107 108 9.657419 CATGACAATATCATACAGCCAATACTA 57.343 33.333 0.00 0.00 46.96 1.82
108 109 8.159447 ACATGACAATATCATACAGCCAATACT 58.841 33.333 0.00 0.00 46.96 2.12
109 110 8.327941 ACATGACAATATCATACAGCCAATAC 57.672 34.615 0.00 0.00 46.96 1.89
110 111 8.156165 TGACATGACAATATCATACAGCCAATA 58.844 33.333 0.00 0.00 46.96 1.90
111 112 6.999871 TGACATGACAATATCATACAGCCAAT 59.000 34.615 0.00 0.00 46.96 3.16
112 113 6.355747 TGACATGACAATATCATACAGCCAA 58.644 36.000 0.00 0.00 46.96 4.52
113 114 5.927819 TGACATGACAATATCATACAGCCA 58.072 37.500 0.00 0.00 46.96 4.75
114 115 6.877855 AGATGACATGACAATATCATACAGCC 59.122 38.462 0.00 0.00 46.96 4.85
115 116 7.902387 AGATGACATGACAATATCATACAGC 57.098 36.000 0.00 0.00 46.96 4.40
125 126 9.896645 AAACTTGACTATAGATGACATGACAAT 57.103 29.630 6.78 0.00 0.00 2.71
134 135 9.982651 GCCAACTATAAACTTGACTATAGATGA 57.017 33.333 6.78 0.00 34.92 2.92
135 136 9.764363 TGCCAACTATAAACTTGACTATAGATG 57.236 33.333 6.78 2.50 33.74 2.90
137 138 9.817809 CTTGCCAACTATAAACTTGACTATAGA 57.182 33.333 6.78 0.00 33.88 1.98
138 139 9.601217 ACTTGCCAACTATAAACTTGACTATAG 57.399 33.333 0.00 0.00 35.22 1.31
142 143 9.953565 TTATACTTGCCAACTATAAACTTGACT 57.046 29.630 0.00 0.00 0.00 3.41
192 193 9.924650 GAGTCGGTCCATGTATTAATAAACTAT 57.075 33.333 0.00 0.00 0.00 2.12
193 194 8.916062 TGAGTCGGTCCATGTATTAATAAACTA 58.084 33.333 0.00 0.00 0.00 2.24
194 195 7.709613 GTGAGTCGGTCCATGTATTAATAAACT 59.290 37.037 0.00 0.00 0.00 2.66
195 196 7.709613 AGTGAGTCGGTCCATGTATTAATAAAC 59.290 37.037 0.00 0.00 0.00 2.01
196 197 7.788026 AGTGAGTCGGTCCATGTATTAATAAA 58.212 34.615 0.00 0.00 0.00 1.40
197 198 7.287005 AGAGTGAGTCGGTCCATGTATTAATAA 59.713 37.037 0.00 0.00 0.00 1.40
198 199 6.776116 AGAGTGAGTCGGTCCATGTATTAATA 59.224 38.462 0.00 0.00 0.00 0.98
199 200 5.598830 AGAGTGAGTCGGTCCATGTATTAAT 59.401 40.000 0.00 0.00 0.00 1.40
200 201 4.954202 AGAGTGAGTCGGTCCATGTATTAA 59.046 41.667 0.00 0.00 0.00 1.40
201 202 4.533815 AGAGTGAGTCGGTCCATGTATTA 58.466 43.478 0.00 0.00 0.00 0.98
202 203 3.366396 AGAGTGAGTCGGTCCATGTATT 58.634 45.455 0.00 0.00 0.00 1.89
203 204 2.952978 GAGAGTGAGTCGGTCCATGTAT 59.047 50.000 0.00 0.00 0.00 2.29
204 205 2.026169 AGAGAGTGAGTCGGTCCATGTA 60.026 50.000 0.00 0.00 0.00 2.29
205 206 1.178276 GAGAGTGAGTCGGTCCATGT 58.822 55.000 0.00 0.00 0.00 3.21
206 207 1.403679 GAGAGAGTGAGTCGGTCCATG 59.596 57.143 0.00 0.00 0.00 3.66
207 208 1.004862 TGAGAGAGTGAGTCGGTCCAT 59.995 52.381 0.00 0.00 0.00 3.41
208 209 0.400594 TGAGAGAGTGAGTCGGTCCA 59.599 55.000 0.00 0.00 0.00 4.02
209 210 1.757682 ATGAGAGAGTGAGTCGGTCC 58.242 55.000 0.00 0.00 0.00 4.46
210 211 4.966965 TTTATGAGAGAGTGAGTCGGTC 57.033 45.455 0.00 0.00 0.00 4.79
211 212 5.654650 AGATTTTATGAGAGAGTGAGTCGGT 59.345 40.000 0.00 0.00 0.00 4.69
212 213 6.142818 AGATTTTATGAGAGAGTGAGTCGG 57.857 41.667 0.00 0.00 0.00 4.79
213 214 9.232082 CTAAAGATTTTATGAGAGAGTGAGTCG 57.768 37.037 0.00 0.00 0.00 4.18
230 231 9.988350 CAAAGCACGTAATACATCTAAAGATTT 57.012 29.630 0.00 0.00 31.21 2.17
231 232 9.162764 ACAAAGCACGTAATACATCTAAAGATT 57.837 29.630 0.00 0.00 31.21 2.40
232 233 8.718102 ACAAAGCACGTAATACATCTAAAGAT 57.282 30.769 0.00 0.00 34.56 2.40
233 234 9.297586 CTACAAAGCACGTAATACATCTAAAGA 57.702 33.333 0.00 0.00 0.00 2.52
252 253 2.003301 GAAGAGAAGCGGGCTACAAAG 58.997 52.381 0.00 0.00 0.00 2.77
253 254 1.623811 AGAAGAGAAGCGGGCTACAAA 59.376 47.619 0.00 0.00 0.00 2.83
254 255 1.204941 GAGAAGAGAAGCGGGCTACAA 59.795 52.381 0.00 0.00 0.00 2.41
255 256 0.818296 GAGAAGAGAAGCGGGCTACA 59.182 55.000 0.00 0.00 0.00 2.74
256 257 1.107945 AGAGAAGAGAAGCGGGCTAC 58.892 55.000 0.00 0.00 0.00 3.58
257 258 1.853963 AAGAGAAGAGAAGCGGGCTA 58.146 50.000 0.00 0.00 0.00 3.93
258 259 0.980423 AAAGAGAAGAGAAGCGGGCT 59.020 50.000 0.00 0.00 0.00 5.19
259 260 1.735018 GAAAAGAGAAGAGAAGCGGGC 59.265 52.381 0.00 0.00 0.00 6.13
260 261 3.045601 TGAAAAGAGAAGAGAAGCGGG 57.954 47.619 0.00 0.00 0.00 6.13
289 290 9.886132 AACGGATTGTAAGTCTTTAGATAACAT 57.114 29.630 0.00 0.00 0.00 2.71
290 291 9.715121 AAACGGATTGTAAGTCTTTAGATAACA 57.285 29.630 0.00 0.00 0.00 2.41
294 295 8.827677 GCATAAACGGATTGTAAGTCTTTAGAT 58.172 33.333 0.00 0.00 0.00 1.98
295 296 7.279313 GGCATAAACGGATTGTAAGTCTTTAGA 59.721 37.037 0.00 0.00 0.00 2.10
296 297 7.065324 TGGCATAAACGGATTGTAAGTCTTTAG 59.935 37.037 0.00 0.00 0.00 1.85
297 298 6.879993 TGGCATAAACGGATTGTAAGTCTTTA 59.120 34.615 0.00 0.00 0.00 1.85
298 299 5.708230 TGGCATAAACGGATTGTAAGTCTTT 59.292 36.000 0.00 0.00 0.00 2.52
299 300 5.123344 GTGGCATAAACGGATTGTAAGTCTT 59.877 40.000 0.00 0.00 0.00 3.01
300 301 4.634443 GTGGCATAAACGGATTGTAAGTCT 59.366 41.667 0.00 0.00 0.00 3.24
301 302 4.201881 GGTGGCATAAACGGATTGTAAGTC 60.202 45.833 0.00 0.00 0.00 3.01
302 303 3.692593 GGTGGCATAAACGGATTGTAAGT 59.307 43.478 0.00 0.00 0.00 2.24
303 304 3.945285 AGGTGGCATAAACGGATTGTAAG 59.055 43.478 0.00 0.00 0.00 2.34
304 305 3.958018 AGGTGGCATAAACGGATTGTAA 58.042 40.909 0.00 0.00 0.00 2.41
305 306 3.637911 AGGTGGCATAAACGGATTGTA 57.362 42.857 0.00 0.00 0.00 2.41
306 307 2.507407 AGGTGGCATAAACGGATTGT 57.493 45.000 0.00 0.00 0.00 2.71
307 308 5.514274 AATAAGGTGGCATAAACGGATTG 57.486 39.130 0.00 0.00 0.00 2.67
308 309 8.161425 AGTATAATAAGGTGGCATAAACGGATT 58.839 33.333 0.00 0.00 0.00 3.01
309 310 7.686434 AGTATAATAAGGTGGCATAAACGGAT 58.314 34.615 0.00 0.00 0.00 4.18
310 311 7.069877 AGTATAATAAGGTGGCATAAACGGA 57.930 36.000 0.00 0.00 0.00 4.69
311 312 7.581476 CAAGTATAATAAGGTGGCATAAACGG 58.419 38.462 0.00 0.00 0.00 4.44
312 313 7.041372 AGCAAGTATAATAAGGTGGCATAAACG 60.041 37.037 0.00 0.00 0.00 3.60
313 314 8.166422 AGCAAGTATAATAAGGTGGCATAAAC 57.834 34.615 0.00 0.00 0.00 2.01
314 315 8.217799 AGAGCAAGTATAATAAGGTGGCATAAA 58.782 33.333 0.00 0.00 0.00 1.40
315 316 7.745717 AGAGCAAGTATAATAAGGTGGCATAA 58.254 34.615 0.00 0.00 0.00 1.90
316 317 7.316393 AGAGCAAGTATAATAAGGTGGCATA 57.684 36.000 0.00 0.00 0.00 3.14
317 318 6.192970 AGAGCAAGTATAATAAGGTGGCAT 57.807 37.500 0.00 0.00 0.00 4.40
318 319 5.630415 AGAGCAAGTATAATAAGGTGGCA 57.370 39.130 0.00 0.00 0.00 4.92
319 320 6.147985 GCTTAGAGCAAGTATAATAAGGTGGC 59.852 42.308 0.00 0.00 41.89 5.01
320 321 7.659652 GCTTAGAGCAAGTATAATAAGGTGG 57.340 40.000 0.00 0.00 41.89 4.61
336 337 6.511416 TGATGACTAAAGAGATGCTTAGAGC 58.489 40.000 0.00 0.00 42.82 4.09
337 338 7.116662 GCATGATGACTAAAGAGATGCTTAGAG 59.883 40.741 0.00 0.00 35.24 2.43
338 339 6.927936 GCATGATGACTAAAGAGATGCTTAGA 59.072 38.462 0.00 0.00 35.24 2.10
339 340 6.147492 GGCATGATGACTAAAGAGATGCTTAG 59.853 42.308 0.00 0.00 35.24 2.18
340 341 5.994054 GGCATGATGACTAAAGAGATGCTTA 59.006 40.000 0.00 0.00 35.24 3.09
341 342 4.820716 GGCATGATGACTAAAGAGATGCTT 59.179 41.667 0.00 0.00 38.88 3.91
342 343 4.102838 AGGCATGATGACTAAAGAGATGCT 59.897 41.667 0.00 0.00 30.85 3.79
343 344 4.387598 AGGCATGATGACTAAAGAGATGC 58.612 43.478 0.00 0.00 30.85 3.91
344 345 5.856156 AGAGGCATGATGACTAAAGAGATG 58.144 41.667 0.00 0.00 34.53 2.90
345 346 6.497624 AAGAGGCATGATGACTAAAGAGAT 57.502 37.500 0.00 0.00 34.53 2.75
346 347 5.946942 AAGAGGCATGATGACTAAAGAGA 57.053 39.130 0.00 0.00 34.53 3.10
347 348 6.815089 AGTAAGAGGCATGATGACTAAAGAG 58.185 40.000 0.00 0.00 34.53 2.85
348 349 6.798427 AGTAAGAGGCATGATGACTAAAGA 57.202 37.500 0.00 0.00 34.53 2.52
349 350 7.117523 GCATAGTAAGAGGCATGATGACTAAAG 59.882 40.741 0.00 0.00 34.53 1.85
350 351 6.931281 GCATAGTAAGAGGCATGATGACTAAA 59.069 38.462 0.00 0.00 34.53 1.85
351 352 6.041979 TGCATAGTAAGAGGCATGATGACTAA 59.958 38.462 0.00 0.00 34.53 2.24
352 353 5.539955 TGCATAGTAAGAGGCATGATGACTA 59.460 40.000 0.00 0.00 34.53 2.59
353 354 4.346127 TGCATAGTAAGAGGCATGATGACT 59.654 41.667 0.00 0.00 39.41 3.41
354 355 4.635223 TGCATAGTAAGAGGCATGATGAC 58.365 43.478 0.00 0.00 0.00 3.06
355 356 4.961438 TGCATAGTAAGAGGCATGATGA 57.039 40.909 0.00 0.00 0.00 2.92
356 357 6.570672 ATTTGCATAGTAAGAGGCATGATG 57.429 37.500 0.00 0.00 35.98 3.07
357 358 8.159447 TCTAATTTGCATAGTAAGAGGCATGAT 58.841 33.333 0.00 0.00 35.98 2.45
358 359 7.508687 TCTAATTTGCATAGTAAGAGGCATGA 58.491 34.615 0.00 0.00 35.98 3.07
359 360 7.734924 TCTAATTTGCATAGTAAGAGGCATG 57.265 36.000 0.00 0.00 35.98 4.06
360 361 8.752005 TTTCTAATTTGCATAGTAAGAGGCAT 57.248 30.769 0.00 0.00 35.98 4.40
361 362 8.752005 ATTTCTAATTTGCATAGTAAGAGGCA 57.248 30.769 0.00 0.00 0.00 4.75
362 363 9.455847 CAATTTCTAATTTGCATAGTAAGAGGC 57.544 33.333 0.00 0.00 0.00 4.70
363 364 9.956720 CCAATTTCTAATTTGCATAGTAAGAGG 57.043 33.333 0.00 0.00 0.00 3.69
366 367 9.956720 CCTCCAATTTCTAATTTGCATAGTAAG 57.043 33.333 0.00 0.00 0.00 2.34
367 368 8.912988 CCCTCCAATTTCTAATTTGCATAGTAA 58.087 33.333 0.00 0.00 0.00 2.24
368 369 8.278639 TCCCTCCAATTTCTAATTTGCATAGTA 58.721 33.333 0.00 0.00 0.00 1.82
369 370 7.125391 TCCCTCCAATTTCTAATTTGCATAGT 58.875 34.615 0.00 0.00 0.00 2.12
370 371 7.587037 TCCCTCCAATTTCTAATTTGCATAG 57.413 36.000 0.00 0.00 0.00 2.23
371 372 7.398618 TGTTCCCTCCAATTTCTAATTTGCATA 59.601 33.333 0.00 0.00 0.00 3.14
372 373 6.213195 TGTTCCCTCCAATTTCTAATTTGCAT 59.787 34.615 0.00 0.00 0.00 3.96
373 374 5.541868 TGTTCCCTCCAATTTCTAATTTGCA 59.458 36.000 0.00 0.00 0.00 4.08
374 375 6.036577 TGTTCCCTCCAATTTCTAATTTGC 57.963 37.500 0.00 0.00 0.00 3.68
375 376 7.267857 GGATGTTCCCTCCAATTTCTAATTTG 58.732 38.462 0.00 0.00 32.72 2.32
376 377 7.423844 GGATGTTCCCTCCAATTTCTAATTT 57.576 36.000 0.00 0.00 32.72 1.82
422 423 7.147355 ACCTGTAACTCCTAAAGAAAAGGAACT 60.147 37.037 0.00 0.00 42.56 3.01
423 424 6.996879 ACCTGTAACTCCTAAAGAAAAGGAAC 59.003 38.462 0.00 0.00 42.56 3.62
424 425 7.145474 ACCTGTAACTCCTAAAGAAAAGGAA 57.855 36.000 0.00 0.00 42.56 3.36
425 426 6.758806 ACCTGTAACTCCTAAAGAAAAGGA 57.241 37.500 0.00 0.00 40.92 3.36
426 427 9.819267 CTATACCTGTAACTCCTAAAGAAAAGG 57.181 37.037 0.00 0.00 35.26 3.11
427 428 9.315525 GCTATACCTGTAACTCCTAAAGAAAAG 57.684 37.037 0.00 0.00 0.00 2.27
428 429 9.043548 AGCTATACCTGTAACTCCTAAAGAAAA 57.956 33.333 0.00 0.00 0.00 2.29
429 430 8.475639 CAGCTATACCTGTAACTCCTAAAGAAA 58.524 37.037 0.00 0.00 0.00 2.52
430 431 7.069578 CCAGCTATACCTGTAACTCCTAAAGAA 59.930 40.741 0.00 0.00 0.00 2.52
431 432 6.550108 CCAGCTATACCTGTAACTCCTAAAGA 59.450 42.308 0.00 0.00 0.00 2.52
432 433 6.739008 GCCAGCTATACCTGTAACTCCTAAAG 60.739 46.154 0.00 0.00 0.00 1.85
433 434 5.070047 GCCAGCTATACCTGTAACTCCTAAA 59.930 44.000 0.00 0.00 0.00 1.85
434 435 4.587684 GCCAGCTATACCTGTAACTCCTAA 59.412 45.833 0.00 0.00 0.00 2.69
435 436 4.150359 GCCAGCTATACCTGTAACTCCTA 58.850 47.826 0.00 0.00 0.00 2.94
436 437 2.966516 GCCAGCTATACCTGTAACTCCT 59.033 50.000 0.00 0.00 0.00 3.69
437 438 2.037381 GGCCAGCTATACCTGTAACTCC 59.963 54.545 0.00 0.00 0.00 3.85
438 439 2.698797 TGGCCAGCTATACCTGTAACTC 59.301 50.000 0.00 0.00 0.00 3.01
439 440 2.759355 TGGCCAGCTATACCTGTAACT 58.241 47.619 0.00 0.00 0.00 2.24
440 441 3.557264 GGATGGCCAGCTATACCTGTAAC 60.557 52.174 22.39 0.00 0.00 2.50
441 442 2.637872 GGATGGCCAGCTATACCTGTAA 59.362 50.000 22.39 0.00 0.00 2.41
442 443 2.257207 GGATGGCCAGCTATACCTGTA 58.743 52.381 22.39 0.00 0.00 2.74
443 444 1.059913 GGATGGCCAGCTATACCTGT 58.940 55.000 22.39 0.00 0.00 4.00
444 445 1.059098 TGGATGGCCAGCTATACCTG 58.941 55.000 22.39 0.00 39.92 4.00
445 446 3.577556 TGGATGGCCAGCTATACCT 57.422 52.632 22.39 0.00 39.92 3.08
457 458 1.228063 CCTGAAGCCCGATGGATGG 60.228 63.158 0.00 0.00 0.00 3.51
458 459 1.895707 GCCTGAAGCCCGATGGATG 60.896 63.158 0.00 0.00 34.35 3.51
459 460 2.512896 GCCTGAAGCCCGATGGAT 59.487 61.111 0.00 0.00 34.35 3.41
475 476 4.426313 AGCTTTGGTAGGCCCGGC 62.426 66.667 0.00 0.00 35.15 6.13
476 477 2.124695 GAGCTTTGGTAGGCCCGG 60.125 66.667 0.00 0.00 35.15 5.73
477 478 2.511600 CGAGCTTTGGTAGGCCCG 60.512 66.667 0.00 0.00 35.15 6.13
478 479 1.449778 GTCGAGCTTTGGTAGGCCC 60.450 63.158 0.00 0.00 0.00 5.80
479 480 1.810030 CGTCGAGCTTTGGTAGGCC 60.810 63.158 0.00 0.00 0.00 5.19
480 481 2.453638 GCGTCGAGCTTTGGTAGGC 61.454 63.158 0.00 0.00 44.04 3.93
481 482 3.782042 GCGTCGAGCTTTGGTAGG 58.218 61.111 0.00 0.00 44.04 3.18
491 492 0.442699 GCCTAGGTTTTTGCGTCGAG 59.557 55.000 11.31 0.00 0.00 4.04
492 493 0.952010 GGCCTAGGTTTTTGCGTCGA 60.952 55.000 11.31 0.00 0.00 4.20
493 494 0.953960 AGGCCTAGGTTTTTGCGTCG 60.954 55.000 1.29 0.00 0.00 5.12
494 495 0.521735 CAGGCCTAGGTTTTTGCGTC 59.478 55.000 3.98 0.00 0.00 5.19
495 496 0.109723 TCAGGCCTAGGTTTTTGCGT 59.890 50.000 3.98 0.00 0.00 5.24
496 497 0.804989 CTCAGGCCTAGGTTTTTGCG 59.195 55.000 3.98 0.00 0.00 4.85
497 498 0.528017 GCTCAGGCCTAGGTTTTTGC 59.472 55.000 3.98 6.55 0.00 3.68
526 527 1.014352 CTGAATTTTAGGCCCGACGG 58.986 55.000 6.99 6.99 0.00 4.79
527 528 1.014352 CCTGAATTTTAGGCCCGACG 58.986 55.000 0.00 0.00 0.00 5.12
534 535 2.428530 GAGCTTGGGCCTGAATTTTAGG 59.571 50.000 4.53 2.88 39.73 2.69
535 536 2.098117 CGAGCTTGGGCCTGAATTTTAG 59.902 50.000 4.53 0.00 39.73 1.85
536 537 2.091541 CGAGCTTGGGCCTGAATTTTA 58.908 47.619 4.53 0.00 39.73 1.52
537 538 0.890683 CGAGCTTGGGCCTGAATTTT 59.109 50.000 4.53 0.00 39.73 1.82
538 539 0.967380 CCGAGCTTGGGCCTGAATTT 60.967 55.000 12.81 0.00 39.73 1.82
539 540 1.379044 CCGAGCTTGGGCCTGAATT 60.379 57.895 12.81 0.00 39.73 2.17
540 541 2.273449 CCGAGCTTGGGCCTGAAT 59.727 61.111 12.81 0.00 39.73 2.57
541 542 4.722700 GCCGAGCTTGGGCCTGAA 62.723 66.667 22.06 0.00 44.97 3.02
549 550 4.335647 ACTGGTGGGCCGAGCTTG 62.336 66.667 18.20 12.70 37.67 4.01
550 551 4.021925 GACTGGTGGGCCGAGCTT 62.022 66.667 18.20 4.95 37.67 3.74
552 553 3.842925 TTTGACTGGTGGGCCGAGC 62.843 63.158 10.38 10.38 37.67 5.03
553 554 0.609131 ATTTTGACTGGTGGGCCGAG 60.609 55.000 0.00 0.00 37.67 4.63
554 555 0.893270 CATTTTGACTGGTGGGCCGA 60.893 55.000 0.00 0.00 37.67 5.54
555 556 1.178534 ACATTTTGACTGGTGGGCCG 61.179 55.000 0.00 0.00 37.67 6.13
556 557 0.603065 GACATTTTGACTGGTGGGCC 59.397 55.000 0.00 0.00 0.00 5.80
557 558 1.270550 CAGACATTTTGACTGGTGGGC 59.729 52.381 0.02 0.00 36.70 5.36
558 559 2.586425 ACAGACATTTTGACTGGTGGG 58.414 47.619 10.75 0.00 42.81 4.61
561 562 2.958355 CCCAACAGACATTTTGACTGGT 59.042 45.455 10.75 2.39 42.81 4.00
562 563 2.288395 GCCCAACAGACATTTTGACTGG 60.288 50.000 10.75 0.00 42.81 4.00
563 564 2.288395 GGCCCAACAGACATTTTGACTG 60.288 50.000 0.00 5.62 43.81 3.51
564 565 1.963515 GGCCCAACAGACATTTTGACT 59.036 47.619 0.00 0.00 0.00 3.41
565 566 1.963515 AGGCCCAACAGACATTTTGAC 59.036 47.619 0.00 0.00 0.00 3.18
566 567 2.364970 CAAGGCCCAACAGACATTTTGA 59.635 45.455 0.00 0.00 0.00 2.69
567 568 2.548493 CCAAGGCCCAACAGACATTTTG 60.548 50.000 0.00 0.00 0.00 2.44
568 569 1.693606 CCAAGGCCCAACAGACATTTT 59.306 47.619 0.00 0.00 0.00 1.82
569 570 1.341080 CCAAGGCCCAACAGACATTT 58.659 50.000 0.00 0.00 0.00 2.32
570 571 0.542702 CCCAAGGCCCAACAGACATT 60.543 55.000 0.00 0.00 0.00 2.71
571 572 1.077265 CCCAAGGCCCAACAGACAT 59.923 57.895 0.00 0.00 0.00 3.06
572 573 2.520458 CCCAAGGCCCAACAGACA 59.480 61.111 0.00 0.00 0.00 3.41
573 574 2.991540 GCCCAAGGCCCAACAGAC 60.992 66.667 0.00 0.00 44.06 3.51
583 584 2.043652 CCAGACCATGGCCCAAGG 60.044 66.667 13.04 2.78 43.83 3.61
600 601 5.966742 ATTTGCACTTTAAGGAAGAGGTC 57.033 39.130 0.00 0.00 38.77 3.85
601 602 5.411669 CGTATTTGCACTTTAAGGAAGAGGT 59.588 40.000 0.00 0.00 38.77 3.85
602 603 5.642063 TCGTATTTGCACTTTAAGGAAGAGG 59.358 40.000 0.00 0.00 38.77 3.69
603 604 6.721571 TCGTATTTGCACTTTAAGGAAGAG 57.278 37.500 0.00 0.00 38.77 2.85
604 605 6.093495 CCATCGTATTTGCACTTTAAGGAAGA 59.907 38.462 0.00 0.00 38.77 2.87
605 606 6.258160 CCATCGTATTTGCACTTTAAGGAAG 58.742 40.000 0.00 0.00 41.32 3.46
606 607 5.124776 CCCATCGTATTTGCACTTTAAGGAA 59.875 40.000 0.00 0.00 0.00 3.36
607 608 4.638421 CCCATCGTATTTGCACTTTAAGGA 59.362 41.667 0.00 0.00 0.00 3.36
608 609 4.733523 GCCCATCGTATTTGCACTTTAAGG 60.734 45.833 0.00 0.00 0.00 2.69
609 610 4.351192 GCCCATCGTATTTGCACTTTAAG 58.649 43.478 0.00 0.00 0.00 1.85
610 611 3.129638 GGCCCATCGTATTTGCACTTTAA 59.870 43.478 0.00 0.00 0.00 1.52
611 612 2.685897 GGCCCATCGTATTTGCACTTTA 59.314 45.455 0.00 0.00 0.00 1.85
612 613 1.476488 GGCCCATCGTATTTGCACTTT 59.524 47.619 0.00 0.00 0.00 2.66
613 614 1.102978 GGCCCATCGTATTTGCACTT 58.897 50.000 0.00 0.00 0.00 3.16
614 615 0.255890 AGGCCCATCGTATTTGCACT 59.744 50.000 0.00 0.00 0.00 4.40
615 616 0.381801 CAGGCCCATCGTATTTGCAC 59.618 55.000 0.00 0.00 0.00 4.57
616 617 0.254462 TCAGGCCCATCGTATTTGCA 59.746 50.000 0.00 0.00 0.00 4.08
617 618 0.947244 CTCAGGCCCATCGTATTTGC 59.053 55.000 0.00 0.00 0.00 3.68
618 619 0.947244 GCTCAGGCCCATCGTATTTG 59.053 55.000 0.00 0.00 0.00 2.32
619 620 3.403936 GCTCAGGCCCATCGTATTT 57.596 52.632 0.00 0.00 0.00 1.40
644 645 0.657840 GATTTTGAGCCCGATGGTCG 59.342 55.000 0.00 0.00 44.62 4.79
645 646 2.044123 AGATTTTGAGCCCGATGGTC 57.956 50.000 0.00 0.00 41.96 4.02
646 647 2.158755 CCTAGATTTTGAGCCCGATGGT 60.159 50.000 0.00 0.00 0.00 3.55
647 648 2.498167 CCTAGATTTTGAGCCCGATGG 58.502 52.381 0.00 0.00 0.00 3.51
648 649 1.876156 GCCTAGATTTTGAGCCCGATG 59.124 52.381 0.00 0.00 0.00 3.84
649 650 1.202818 GGCCTAGATTTTGAGCCCGAT 60.203 52.381 0.00 0.00 37.66 4.18
650 651 0.180406 GGCCTAGATTTTGAGCCCGA 59.820 55.000 0.00 0.00 37.66 5.14
651 652 0.181350 AGGCCTAGATTTTGAGCCCG 59.819 55.000 1.29 0.00 45.00 6.13
652 653 2.224646 CCTAGGCCTAGATTTTGAGCCC 60.225 54.545 36.80 0.00 45.00 5.19
653 654 2.439880 ACCTAGGCCTAGATTTTGAGCC 59.560 50.000 36.80 0.00 44.20 4.70
654 655 3.734463 GACCTAGGCCTAGATTTTGAGC 58.266 50.000 36.80 15.31 35.21 4.26
655 656 3.243907 CCGACCTAGGCCTAGATTTTGAG 60.244 52.174 36.80 21.75 35.21 3.02
656 657 2.698797 CCGACCTAGGCCTAGATTTTGA 59.301 50.000 36.80 4.20 35.21 2.69
657 658 3.113260 CCGACCTAGGCCTAGATTTTG 57.887 52.381 36.80 23.08 35.21 2.44
678 679 4.760047 CCCGACCTTGCCGACAGG 62.760 72.222 0.00 0.00 41.62 4.00
679 680 3.934391 GACCCGACCTTGCCGACAG 62.934 68.421 0.00 0.00 0.00 3.51
680 681 3.998672 GACCCGACCTTGCCGACA 61.999 66.667 0.00 0.00 0.00 4.35
681 682 3.934391 CTGACCCGACCTTGCCGAC 62.934 68.421 0.00 0.00 0.00 4.79
682 683 3.691342 CTGACCCGACCTTGCCGA 61.691 66.667 0.00 0.00 0.00 5.54
683 684 4.760047 CCTGACCCGACCTTGCCG 62.760 72.222 0.00 0.00 0.00 5.69
686 687 3.612247 CTGGCCTGACCCGACCTTG 62.612 68.421 3.32 0.00 37.83 3.61
687 688 3.322466 CTGGCCTGACCCGACCTT 61.322 66.667 3.32 0.00 37.83 3.50
690 691 4.083862 GACCTGGCCTGACCCGAC 62.084 72.222 11.88 0.00 37.83 4.79
701 702 2.332654 CCGAAAAAGCCCGACCTGG 61.333 63.158 0.00 0.00 37.55 4.45
702 703 2.332654 CCCGAAAAAGCCCGACCTG 61.333 63.158 0.00 0.00 0.00 4.00
703 704 2.033602 CCCGAAAAAGCCCGACCT 59.966 61.111 0.00 0.00 0.00 3.85
704 705 3.744719 GCCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 0.00 4.79
705 706 3.744719 GGCCCGAAAAAGCCCGAC 61.745 66.667 0.00 0.00 43.76 4.79
711 712 3.747976 CAGCCCGGCCCGAAAAAG 61.748 66.667 3.71 0.00 0.00 2.27
729 730 1.542547 GGAACTATACGTGGCCATGGG 60.543 57.143 28.37 16.70 0.00 4.00
730 731 1.140052 TGGAACTATACGTGGCCATGG 59.860 52.381 28.37 16.88 0.00 3.66
731 732 2.483876 CTGGAACTATACGTGGCCATG 58.516 52.381 23.83 23.83 32.48 3.66
732 733 1.416401 CCTGGAACTATACGTGGCCAT 59.584 52.381 9.72 0.00 32.48 4.40
733 734 0.828022 CCTGGAACTATACGTGGCCA 59.172 55.000 0.00 0.00 32.12 5.36
734 735 0.828677 ACCTGGAACTATACGTGGCC 59.171 55.000 0.00 0.00 0.00 5.36
735 736 3.806625 TTACCTGGAACTATACGTGGC 57.193 47.619 0.00 0.00 0.00 5.01
736 737 5.075858 TGTTTACCTGGAACTATACGTGG 57.924 43.478 0.00 0.00 0.00 4.94
737 738 6.257193 GGAATGTTTACCTGGAACTATACGTG 59.743 42.308 0.00 0.00 0.00 4.49
738 739 6.155737 AGGAATGTTTACCTGGAACTATACGT 59.844 38.462 0.00 0.00 34.99 3.57
739 740 6.579865 AGGAATGTTTACCTGGAACTATACG 58.420 40.000 0.00 0.00 34.99 3.06
740 741 9.543783 CTTAGGAATGTTTACCTGGAACTATAC 57.456 37.037 0.00 0.00 37.68 1.47
741 742 9.496710 TCTTAGGAATGTTTACCTGGAACTATA 57.503 33.333 0.00 0.00 37.68 1.31
742 743 8.388656 TCTTAGGAATGTTTACCTGGAACTAT 57.611 34.615 0.00 0.00 37.68 2.12
743 744 7.801893 TCTTAGGAATGTTTACCTGGAACTA 57.198 36.000 0.00 0.00 37.68 2.24
744 745 6.697641 TCTTAGGAATGTTTACCTGGAACT 57.302 37.500 0.00 0.00 37.68 3.01
745 746 7.664318 TCTTTCTTAGGAATGTTTACCTGGAAC 59.336 37.037 0.00 0.00 37.68 3.62
746 747 7.751646 TCTTTCTTAGGAATGTTTACCTGGAA 58.248 34.615 0.00 0.00 37.68 3.53
747 748 7.324388 TCTTTCTTAGGAATGTTTACCTGGA 57.676 36.000 0.00 0.00 37.68 3.86
748 749 7.883311 TCTTCTTTCTTAGGAATGTTTACCTGG 59.117 37.037 0.00 0.00 37.68 4.45
749 750 8.848474 TCTTCTTTCTTAGGAATGTTTACCTG 57.152 34.615 0.00 0.00 37.68 4.00
796 797 1.078708 CGCTCCGAGCCCCTAAAAA 60.079 57.895 14.85 0.00 38.18 1.94
797 798 2.288025 ACGCTCCGAGCCCCTAAAA 61.288 57.895 14.85 0.00 38.18 1.52
798 799 2.682494 ACGCTCCGAGCCCCTAAA 60.682 61.111 14.85 0.00 38.18 1.85
799 800 3.458163 CACGCTCCGAGCCCCTAA 61.458 66.667 14.85 0.00 38.18 2.69
833 834 2.584970 CTAAATCTCGGCCGCGCA 60.585 61.111 23.51 6.62 0.00 6.09
845 846 3.636764 GGATTCATTGAACGGGCCTAAAT 59.363 43.478 0.84 0.00 0.00 1.40
859 860 2.039084 GGCCCGTATGAGAGGATTCATT 59.961 50.000 0.00 0.00 38.65 2.57
864 865 1.734655 AATGGCCCGTATGAGAGGAT 58.265 50.000 0.00 0.00 0.00 3.24
865 866 1.140852 CAAATGGCCCGTATGAGAGGA 59.859 52.381 0.00 0.00 0.00 3.71
866 867 1.134098 ACAAATGGCCCGTATGAGAGG 60.134 52.381 0.00 0.00 0.00 3.69
867 868 2.213499 GACAAATGGCCCGTATGAGAG 58.787 52.381 0.00 0.00 0.00 3.20
872 873 0.539986 AGTCGACAAATGGCCCGTAT 59.460 50.000 19.50 0.00 0.00 3.06
882 883 1.000607 CTGAAGGTCCGAGTCGACAAA 60.001 52.381 19.50 0.00 34.24 2.83
883 884 0.596577 CTGAAGGTCCGAGTCGACAA 59.403 55.000 19.50 0.00 34.24 3.18
884 885 1.241990 CCTGAAGGTCCGAGTCGACA 61.242 60.000 19.50 0.00 34.24 4.35
885 886 1.507174 CCTGAAGGTCCGAGTCGAC 59.493 63.158 15.64 7.70 0.00 4.20
898 899 0.539438 AAATGCCGTGAAGCCCTGAA 60.539 50.000 0.00 0.00 0.00 3.02
899 900 0.539438 AAAATGCCGTGAAGCCCTGA 60.539 50.000 0.00 0.00 0.00 3.86
900 901 0.318120 AAAAATGCCGTGAAGCCCTG 59.682 50.000 0.00 0.00 0.00 4.45
901 902 0.603065 GAAAAATGCCGTGAAGCCCT 59.397 50.000 0.00 0.00 0.00 5.19
902 903 0.603065 AGAAAAATGCCGTGAAGCCC 59.397 50.000 0.00 0.00 0.00 5.19
903 904 1.000274 ACAGAAAAATGCCGTGAAGCC 60.000 47.619 0.00 0.00 0.00 4.35
904 905 2.287547 TGACAGAAAAATGCCGTGAAGC 60.288 45.455 0.00 0.00 0.00 3.86
915 916 5.098893 CCGTGTGAAAATGTGACAGAAAAA 58.901 37.500 0.00 0.00 0.00 1.94
1042 1043 2.754375 GAGGAGGGTTTTGGGCGA 59.246 61.111 0.00 0.00 0.00 5.54
1248 1249 2.725312 GCCGCTCATCTCCAGGTCA 61.725 63.158 0.00 0.00 0.00 4.02
1401 1402 3.344137 ATGGGCAACGAAGGCGGAT 62.344 57.895 0.00 0.00 43.17 4.18
1428 1429 0.241213 GGAAGAAGAAAAGTGCGGGC 59.759 55.000 0.00 0.00 0.00 6.13
1438 1439 1.893801 GTGGAGAGGACGGAAGAAGAA 59.106 52.381 0.00 0.00 0.00 2.52
1439 1440 1.546961 GTGGAGAGGACGGAAGAAGA 58.453 55.000 0.00 0.00 0.00 2.87
1444 1445 0.406750 TAGTGGTGGAGAGGACGGAA 59.593 55.000 0.00 0.00 0.00 4.30
1461 1462 1.271656 CGGGGGCGTATTCTTAGGTAG 59.728 57.143 0.00 0.00 0.00 3.18
1469 1470 2.888834 TAGTAAACGGGGGCGTATTC 57.111 50.000 0.00 0.00 0.00 1.75
1495 1496 4.373156 AGGACCAATGAACAAAGCTAGT 57.627 40.909 0.00 0.00 0.00 2.57
1496 1497 5.582665 GTCTAGGACCAATGAACAAAGCTAG 59.417 44.000 0.00 0.00 0.00 3.42
1497 1498 5.012664 TGTCTAGGACCAATGAACAAAGCTA 59.987 40.000 0.00 0.00 0.00 3.32
1528 1529 0.037975 CTAACAAGGTACACGGCCGT 60.038 55.000 28.70 28.70 0.00 5.68
1543 1544 1.953559 TTGCGCCATCAGATCCTAAC 58.046 50.000 4.18 0.00 0.00 2.34
1634 1635 7.013464 GGTCTTATAAGTGCTAACTCTCTGCTA 59.987 40.741 12.19 0.00 34.77 3.49
1670 1671 2.659428 AGATAACAAGGGATTGGCAGC 58.341 47.619 0.00 0.00 0.00 5.25
1672 1673 8.830915 TTTTATTAGATAACAAGGGATTGGCA 57.169 30.769 0.00 0.00 0.00 4.92
1702 1704 3.894257 TGCGATCTATGCAGCTACC 57.106 52.632 0.00 0.00 37.44 3.18
1716 1718 4.117685 CAGTCAATGAGATCAATCTGCGA 58.882 43.478 0.00 0.00 37.25 5.10
1717 1719 4.117685 TCAGTCAATGAGATCAATCTGCG 58.882 43.478 0.00 0.00 37.25 5.18
1732 1734 1.960689 TCGTGTCACCATCTCAGTCAA 59.039 47.619 0.00 0.00 0.00 3.18
1805 1809 8.500753 AATAAGTATGAAACGCATTCCTTGTA 57.499 30.769 0.00 0.00 38.44 2.41
1828 1832 9.065798 GGGGTGCATTATAATTTTGCATAAAAT 57.934 29.630 13.73 0.00 46.90 1.82
1836 1840 5.350504 TGGTGGGGTGCATTATAATTTTG 57.649 39.130 0.00 0.00 0.00 2.44
1850 1854 1.852965 CCAATTCTATCCTGGTGGGGT 59.147 52.381 0.00 0.00 35.33 4.95
1851 1855 1.852965 ACCAATTCTATCCTGGTGGGG 59.147 52.381 0.00 0.00 41.95 4.96
1852 1856 5.571658 GCTATACCAATTCTATCCTGGTGGG 60.572 48.000 3.24 0.00 43.36 4.61
1858 1862 9.512588 CAATTTGAGCTATACCAATTCTATCCT 57.487 33.333 0.00 0.00 0.00 3.24
1881 1885 3.128589 GTCATGACAATACCGGTTGCAAT 59.871 43.478 21.07 0.00 32.32 3.56
2647 2987 3.462483 ACGGAACTGTACACACATGAA 57.538 42.857 0.00 0.00 33.14 2.57
2722 3062 3.390967 TCAATCCGTATCCACATCCACAT 59.609 43.478 0.00 0.00 0.00 3.21
2738 3078 7.977853 AGAATATGCAACAGAAAACATCAATCC 59.022 33.333 0.00 0.00 0.00 3.01
2899 3429 4.507710 TCCTTTCTGATGTTTCATCCTCG 58.492 43.478 7.18 0.00 0.00 4.63
2993 3523 8.885494 TCTAAAGTAAAGCATGTGCAATTTTT 57.115 26.923 7.83 1.93 45.16 1.94
3059 3593 3.151912 AGAAGCAGTCAGGAGCAAAAT 57.848 42.857 0.00 0.00 0.00 1.82
3210 3744 6.419116 CAGAGATCACTATGTATTGTTCACGG 59.581 42.308 0.00 0.00 31.60 4.94
3211 3745 6.975197 ACAGAGATCACTATGTATTGTTCACG 59.025 38.462 0.00 0.00 45.08 4.35
3313 3847 6.152661 TCCACTTTTGCTTTTCTTCTTCTGAA 59.847 34.615 0.00 0.00 0.00 3.02
3525 4066 4.403734 TCCCAAAACATCTGGAAGGTAAC 58.596 43.478 0.00 0.00 35.85 2.50
3526 4067 4.105697 ACTCCCAAAACATCTGGAAGGTAA 59.894 41.667 0.00 0.00 35.85 2.85
3527 4068 3.655777 ACTCCCAAAACATCTGGAAGGTA 59.344 43.478 0.00 0.00 35.85 3.08
3535 4076 2.893489 GGCTGAAACTCCCAAAACATCT 59.107 45.455 0.00 0.00 0.00 2.90
3541 4082 2.708861 TCTACTGGCTGAAACTCCCAAA 59.291 45.455 0.00 0.00 0.00 3.28
3902 4443 9.820229 TTGTAAAGAAGCACGTAAAATATGAAG 57.180 29.630 0.00 0.00 0.00 3.02
3929 4470 8.801715 ACATTGTTTCATAAGCAAGTAAACTG 57.198 30.769 0.00 0.00 32.57 3.16
4116 6018 4.770010 TGCAGGGTTAGGGAAACAAATAAG 59.230 41.667 0.00 0.00 40.08 1.73
4286 6188 9.240734 GGGCAGAAGATTGATATATTTCTTCAT 57.759 33.333 22.67 12.90 44.12 2.57
4364 6266 6.791887 TCTAAGCTTATAACATGCATCTGC 57.208 37.500 6.64 0.00 42.50 4.26
4453 6355 3.683802 GCAGATGCAGCCCTTTATATCT 58.316 45.455 0.00 0.00 41.59 1.98
4504 6406 2.032302 AGTGGAATCGATCGAGAAGACG 59.968 50.000 23.84 0.00 0.00 4.18
4616 6518 1.071385 AGTTGACAGAGGGTGCAAGAG 59.929 52.381 0.00 0.00 0.00 2.85
4846 6748 1.614903 CAATGCTTGGTTCCTTCTGCA 59.385 47.619 0.00 0.00 34.88 4.41
4942 6844 0.183014 TCCGCCTGGTTTGTTTACCA 59.817 50.000 0.00 0.00 45.73 3.25
4945 6847 1.883275 CATGTCCGCCTGGTTTGTTTA 59.117 47.619 0.00 0.00 36.30 2.01
4985 6887 4.745125 CCACAGCAAAGTATACCATACTCG 59.255 45.833 0.00 0.00 0.00 4.18
4990 6892 2.242196 AGGCCACAGCAAAGTATACCAT 59.758 45.455 5.01 0.00 42.56 3.55
5075 6978 1.202639 TGCACAGTTACAGTGGTGGAG 60.203 52.381 9.79 0.00 37.46 3.86
5090 6999 7.172532 CAGTACAAGGTTATTCTTTACTGCACA 59.827 37.037 0.00 0.00 35.02 4.57
5099 7008 4.890088 TGCGTCAGTACAAGGTTATTCTT 58.110 39.130 0.00 0.00 0.00 2.52
5140 7049 6.596309 ATCACACTTGTAACTGAGATCAGA 57.404 37.500 16.52 0.00 46.59 3.27
5238 7162 4.020485 AGGTGTACTAATCTGGGTTGTGTC 60.020 45.833 0.00 0.00 0.00 3.67
5258 7182 3.246167 ACTTCCCTCCACTATGAGAAGGT 60.246 47.826 0.00 0.00 34.11 3.50
5297 7221 9.108284 AGCAATTTTGTAGCAAAACTTTAACAT 57.892 25.926 8.89 0.00 0.00 2.71
5368 7297 3.561143 TGGCTAGAACTTTGGCTTTGAA 58.439 40.909 0.00 0.00 0.00 2.69
5372 7301 3.229697 AGTTGGCTAGAACTTTGGCTT 57.770 42.857 0.00 0.00 31.92 4.35
5396 7325 6.824305 CCAATGTTGGTAAGAGAAGTGAAT 57.176 37.500 3.58 0.00 43.43 2.57
5434 7363 7.589395 CCAATATTTTTGGTTAAGGTTTTGGC 58.411 34.615 0.00 0.00 34.92 4.52
5476 7405 0.827089 CCCCACAGTGCAACATTCCA 60.827 55.000 0.00 0.00 41.43 3.53
5495 7480 1.656594 GCAAACCCAAACGAACAACAC 59.343 47.619 0.00 0.00 0.00 3.32
5503 7488 2.459934 GTGAAGAAGCAAACCCAAACG 58.540 47.619 0.00 0.00 0.00 3.60
5508 7493 3.819564 AAAAGGTGAAGAAGCAAACCC 57.180 42.857 0.00 0.00 32.85 4.11
5651 7636 6.829298 AGAGGAACTGATTTACATCTAGACGA 59.171 38.462 0.00 0.00 41.55 4.20
5712 7697 7.116819 CGAGAGTGCAAAAATTAAACCAAAAC 58.883 34.615 0.00 0.00 0.00 2.43
5877 7864 6.767902 ACAGAACAATAGCAAGAGAAACTCAA 59.232 34.615 0.00 0.00 32.06 3.02
5943 7931 6.524101 TGTATTCCAGGCCTTTTCAAATAC 57.476 37.500 0.00 12.98 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.