Multiple sequence alignment - TraesCS2D01G328900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G328900 chr2D 100.000 5926 0 0 1 5926 422078070 422083995 0.000000e+00 10944
1 TraesCS2D01G328900 chr2A 91.272 2555 160 32 2487 5016 568402652 568405168 0.000000e+00 3424
2 TraesCS2D01G328900 chr2A 88.752 1138 63 24 773 1877 568399536 568400641 0.000000e+00 1332
3 TraesCS2D01G328900 chr2A 93.053 619 29 8 1879 2495 568400733 568401339 0.000000e+00 893
4 TraesCS2D01G328900 chr2A 84.727 622 56 24 5316 5926 568410668 568411261 2.380000e-163 586
5 TraesCS2D01G328900 chr2B 93.370 1644 101 2 3380 5016 494374750 494376392 0.000000e+00 2425
6 TraesCS2D01G328900 chr2B 91.918 1126 57 13 2235 3341 494373648 494374758 0.000000e+00 1544
7 TraesCS2D01G328900 chr2B 87.937 887 54 21 780 1629 494370935 494371805 0.000000e+00 996
8 TraesCS2D01G328900 chr2B 90.876 548 24 9 1666 2207 494371804 494372331 0.000000e+00 712
9 TraesCS2D01G328900 chr2B 93.820 356 15 4 5577 5926 494395991 494396345 4.070000e-146 529
10 TraesCS2D01G328900 chr2B 87.472 447 35 8 5076 5502 494378916 494379361 4.120000e-136 496
11 TraesCS2D01G328900 chr2B 93.182 88 5 1 5494 5580 494379397 494379484 1.730000e-25 128
12 TraesCS2D01G328900 chr1D 97.690 736 16 1 1 736 4350998 4351732 0.000000e+00 1264
13 TraesCS2D01G328900 chr1D 97.595 291 7 0 3 293 322927537 322927827 3.190000e-137 499
14 TraesCS2D01G328900 chr5D 97.283 736 19 1 1 736 457014799 457015533 0.000000e+00 1247
15 TraesCS2D01G328900 chr4A 93.750 736 45 1 1 736 441823501 441822767 0.000000e+00 1103
16 TraesCS2D01G328900 chr3A 93.750 736 45 1 1 736 585641707 585642441 0.000000e+00 1103
17 TraesCS2D01G328900 chr1A 93.614 736 46 1 1 736 323641269 323640535 0.000000e+00 1098
18 TraesCS2D01G328900 chr5A 92.527 736 54 1 1 736 585565143 585564409 0.000000e+00 1053
19 TraesCS2D01G328900 chr7B 87.260 730 76 11 15 736 558639057 558638337 0.000000e+00 817
20 TraesCS2D01G328900 chr4D 95.012 421 21 0 1 421 57442123 57441703 0.000000e+00 662


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G328900 chr2D 422078070 422083995 5925 False 10944.000000 10944 100.000000 1 5926 1 chr2D.!!$F1 5925
1 TraesCS2D01G328900 chr2A 568399536 568405168 5632 False 1883.000000 3424 91.025667 773 5016 3 chr2A.!!$F2 4243
2 TraesCS2D01G328900 chr2A 568410668 568411261 593 False 586.000000 586 84.727000 5316 5926 1 chr2A.!!$F1 610
3 TraesCS2D01G328900 chr2B 494370935 494379484 8549 False 1050.166667 2425 90.792500 780 5580 6 chr2B.!!$F2 4800
4 TraesCS2D01G328900 chr1D 4350998 4351732 734 False 1264.000000 1264 97.690000 1 736 1 chr1D.!!$F1 735
5 TraesCS2D01G328900 chr5D 457014799 457015533 734 False 1247.000000 1247 97.283000 1 736 1 chr5D.!!$F1 735
6 TraesCS2D01G328900 chr4A 441822767 441823501 734 True 1103.000000 1103 93.750000 1 736 1 chr4A.!!$R1 735
7 TraesCS2D01G328900 chr3A 585641707 585642441 734 False 1103.000000 1103 93.750000 1 736 1 chr3A.!!$F1 735
8 TraesCS2D01G328900 chr1A 323640535 323641269 734 True 1098.000000 1098 93.614000 1 736 1 chr1A.!!$R1 735
9 TraesCS2D01G328900 chr5A 585564409 585565143 734 True 1053.000000 1053 92.527000 1 736 1 chr5A.!!$R1 735
10 TraesCS2D01G328900 chr7B 558638337 558639057 720 True 817.000000 817 87.260000 15 736 1 chr7B.!!$R1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.322187 GGTATGCGTCCAAGGGTTGT 60.322 55.000 0.00 0.0 0.0 3.32 F
668 676 0.323178 CCTCCATTGCACTCTGGCTT 60.323 55.000 4.58 0.0 32.3 4.35 F
1911 2073 0.106217 ACTCAACCACCAACCCCAAG 60.106 55.000 0.00 0.0 0.0 3.61 F
2141 2308 0.971386 TCCCCCTTGTTGTCTACGAC 59.029 55.000 0.00 0.0 0.0 4.34 F
3075 5880 1.139256 TCCCACTGTGCGTTAACTTGA 59.861 47.619 1.29 0.0 0.0 3.02 F
4006 6813 0.035176 TGGGGCTACACGGTAACAAC 59.965 55.000 0.00 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 2073 0.317603 GAGAATGGATGCACATGCGC 60.318 55.000 0.00 0.00 45.83 6.09 R
2141 2308 0.726827 TAGAATTGCGCGGCAGAAAG 59.273 50.000 8.83 0.00 40.61 2.62 R
3429 6234 0.666913 AGTGCTTCTGTGCTTTGCTG 59.333 50.000 0.00 0.00 0.00 4.41 R
3548 6353 2.193536 AAAGCAACCACCACCGAGC 61.194 57.895 0.00 0.00 0.00 5.03 R
4400 7207 0.109781 CCCCTGAAAACAATCACGCG 60.110 55.000 3.53 3.53 0.00 6.01 R
5626 10993 0.179092 GAGGCCTCAATGCATTTGGC 60.179 55.000 30.58 30.58 45.13 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.322187 GGTATGCGTCCAAGGGTTGT 60.322 55.000 0.00 0.00 0.00 3.32
212 213 0.729116 CAATCTGATCAGGCGCGTTT 59.271 50.000 22.42 4.83 0.00 3.60
307 315 2.270527 GAGGTCCTTCAGCCAGCC 59.729 66.667 0.00 0.00 0.00 4.85
589 597 6.303259 CGACCAAAATTTTCAAGATCGAAGAC 59.697 38.462 0.00 0.00 42.51 3.01
665 673 0.329261 TTCCCTCCATTGCACTCTGG 59.671 55.000 3.26 3.26 0.00 3.86
668 676 0.323178 CCTCCATTGCACTCTGGCTT 60.323 55.000 4.58 0.00 32.30 4.35
822 831 2.478335 AAAAGGCGCTCGGGATTCCA 62.478 55.000 7.64 0.00 0.00 3.53
885 895 2.703409 CGCATCAGTAACCGCTGC 59.297 61.111 0.00 0.00 36.49 5.25
1061 1103 1.260538 CCTCCTCAGCACCAGCAGTA 61.261 60.000 0.00 0.00 45.49 2.74
1298 1361 2.297912 CGTCGTGCCGTTCTTCGTT 61.298 57.895 0.00 0.00 37.94 3.85
1314 1377 5.744490 TCTTCGTTTTCATCCGACTTTTTC 58.256 37.500 0.00 0.00 31.95 2.29
1362 1425 5.772620 CGATCGAATTCGTTTAAATCGTAGC 59.227 40.000 27.32 10.83 36.78 3.58
1398 1461 2.085343 ATGCTTGGTTGTCTGGCCCT 62.085 55.000 0.00 0.00 0.00 5.19
1463 1527 2.281070 CATGGCGGCGGCTTATCT 60.281 61.111 33.21 10.73 39.81 1.98
1533 1598 2.095847 CCCATGCACATGTTTGCGC 61.096 57.895 0.00 0.00 46.20 6.09
1542 1607 1.302192 ATGTTTGCGCACCTACCGT 60.302 52.632 11.12 0.00 0.00 4.83
1599 1664 9.736023 AACAAGCAAAGAACAAAGAAATACTAG 57.264 29.630 0.00 0.00 0.00 2.57
1642 1710 3.112263 TGCCCACTTATTACTAGCACCT 58.888 45.455 0.00 0.00 0.00 4.00
1650 1718 5.867716 ACTTATTACTAGCACCTGTTTGTCG 59.132 40.000 0.00 0.00 0.00 4.35
1654 1722 3.275999 ACTAGCACCTGTTTGTCGTTTT 58.724 40.909 0.00 0.00 0.00 2.43
1737 1805 3.414486 CCAAAGAGTGGTCCGGTTT 57.586 52.632 0.00 0.00 43.20 3.27
1738 1806 2.554370 CCAAAGAGTGGTCCGGTTTA 57.446 50.000 0.00 0.00 43.20 2.01
1851 1922 2.356535 CCTTCTCCAGTGGAATCTTGGG 60.357 54.545 14.17 6.15 0.00 4.12
1871 1942 2.490217 CGGGTCAGTGCTCTACCG 59.510 66.667 10.10 10.10 33.89 4.02
1911 2073 0.106217 ACTCAACCACCAACCCCAAG 60.106 55.000 0.00 0.00 0.00 3.61
1912 2074 1.456705 TCAACCACCAACCCCAAGC 60.457 57.895 0.00 0.00 0.00 4.01
2141 2308 0.971386 TCCCCCTTGTTGTCTACGAC 59.029 55.000 0.00 0.00 0.00 4.34
2175 2342 4.728882 GCAATTCTACAGCTGTGTATGTGC 60.729 45.833 29.57 25.24 38.51 4.57
2221 3685 5.515626 CAGGACCTAAAAGAACGTTATCTCG 59.484 44.000 0.00 0.00 0.00 4.04
2234 3698 9.828852 AGAACGTTATCTCGATATCTAATTGAC 57.171 33.333 0.00 0.00 34.70 3.18
2250 3714 8.158169 TCTAATTGACTAATTCCATGATGTGC 57.842 34.615 0.00 0.00 37.64 4.57
2253 3717 5.628797 TGACTAATTCCATGATGTGCCTA 57.371 39.130 0.00 0.00 0.00 3.93
2296 3761 9.349713 AGTATGTTGATGTAACTTTTCCTTTCA 57.650 29.630 0.00 0.00 40.05 2.69
2320 3785 5.739752 TCTCATTCTATGTTGCCGATTTG 57.260 39.130 0.00 0.00 0.00 2.32
2347 3812 2.269241 CCTCCCTGAAAGCCGTCC 59.731 66.667 0.00 0.00 0.00 4.79
2433 3898 5.476599 TGGATTACAAACCTTCAGAACCATG 59.523 40.000 0.00 0.00 0.00 3.66
2526 5312 2.007608 GAAATTAGTGGCCAGGTCGTC 58.992 52.381 5.11 0.00 0.00 4.20
2605 5391 5.583854 GTCATTGAGTATTGTCACTGCTGAT 59.416 40.000 0.00 0.00 29.47 2.90
2826 5630 7.473027 AAAAACATTTGAGAGAACTGCAATG 57.527 32.000 0.00 0.00 32.63 2.82
2902 5706 2.931969 CGCTTCACATGAACTATGCTGA 59.068 45.455 0.00 0.00 40.59 4.26
3043 5848 4.346730 TGAGCATGAATGATTCCTGGTTT 58.653 39.130 14.58 0.00 36.41 3.27
3049 5854 3.751175 TGAATGATTCCTGGTTTCGTGAC 59.249 43.478 2.26 0.00 0.00 3.67
3052 5857 1.804748 GATTCCTGGTTTCGTGACACC 59.195 52.381 0.00 0.00 0.00 4.16
3068 5873 4.619227 CCGGTCCCACTGTGCGTT 62.619 66.667 1.29 0.00 0.00 4.84
3074 5879 1.263217 GTCCCACTGTGCGTTAACTTG 59.737 52.381 1.29 0.00 0.00 3.16
3075 5880 1.139256 TCCCACTGTGCGTTAACTTGA 59.861 47.619 1.29 0.00 0.00 3.02
3120 5925 4.277672 CCATCCTGATTTCATGGCTAACAG 59.722 45.833 0.00 0.00 0.00 3.16
3127 5932 6.291377 TGATTTCATGGCTAACAGTATCCTC 58.709 40.000 0.00 0.00 0.00 3.71
3171 5976 4.054359 AGGCGGATCAGATATAGGACTT 57.946 45.455 0.00 0.00 0.00 3.01
3234 6039 4.649218 GCATGGGGAGGTATGTTGTTTTAT 59.351 41.667 0.00 0.00 0.00 1.40
3341 6146 2.330231 TCATGCAAAAGCGCAGTTAC 57.670 45.000 11.47 0.00 46.99 2.50
3351 6156 2.710377 AGCGCAGTTACCAATTCATGA 58.290 42.857 11.47 0.00 0.00 3.07
3373 6178 9.632807 CATGACAATATCTTAGTAGGAAGTAGC 57.367 37.037 0.00 0.00 0.00 3.58
3374 6179 8.762481 TGACAATATCTTAGTAGGAAGTAGCA 57.238 34.615 0.00 0.00 0.00 3.49
3375 6180 9.197306 TGACAATATCTTAGTAGGAAGTAGCAA 57.803 33.333 0.00 0.00 0.00 3.91
3395 6200 3.117434 ACTTGCGAACGTTTGCATATC 57.883 42.857 36.76 12.71 46.27 1.63
3421 6226 7.553881 TTTACAAAAGCTATAGATGACCTGC 57.446 36.000 3.21 0.00 0.00 4.85
3429 6234 2.113860 TAGATGACCTGCTTTGCACC 57.886 50.000 0.00 0.00 33.79 5.01
3485 6290 5.565638 GCAAGAATTTCGTTACTTCTCAAGC 59.434 40.000 0.00 0.00 0.00 4.01
3501 6306 3.620488 TCAAGCCAATGTCTAATCACCC 58.380 45.455 0.00 0.00 0.00 4.61
3543 6348 2.609747 AGTTCTGCTCCTGTTGTCCTA 58.390 47.619 0.00 0.00 0.00 2.94
3614 6419 4.431416 TGCCAAGAAGGTAAAGAGTGAA 57.569 40.909 0.00 0.00 40.61 3.18
3678 6483 8.474025 TCTTTCTGTGCTTAAATTTCTTCCAAA 58.526 29.630 0.00 0.00 0.00 3.28
3806 6611 3.721035 TCTGTCATATCGCTGTTGATGG 58.279 45.455 0.00 0.00 0.00 3.51
3955 6762 7.444299 AGATAGAGAATGAGCTGAAGGATTTC 58.556 38.462 0.00 0.00 0.00 2.17
3991 6798 3.654806 AGATCATTTGGATACCTCTGGGG 59.345 47.826 0.00 0.00 36.00 4.96
4006 6813 0.035176 TGGGGCTACACGGTAACAAC 59.965 55.000 0.00 0.00 0.00 3.32
4007 6814 0.035176 GGGGCTACACGGTAACAACA 59.965 55.000 0.00 0.00 0.00 3.33
4014 6821 4.731480 GCTACACGGTAACAACAAAAAGTG 59.269 41.667 0.00 0.00 34.85 3.16
4018 6825 4.264380 CACGGTAACAACAAAAAGTGCTTC 59.736 41.667 0.00 0.00 0.00 3.86
4023 6830 6.198966 GGTAACAACAAAAAGTGCTTCATCAG 59.801 38.462 0.00 0.00 0.00 2.90
4049 6856 4.779993 AAGGTTTCTGTTCCTCACTTCT 57.220 40.909 0.00 0.00 33.09 2.85
4052 6859 4.284746 AGGTTTCTGTTCCTCACTTCTAGG 59.715 45.833 0.00 0.00 35.26 3.02
4120 6927 3.289836 TGAGGATACAAATGGCCATGTG 58.710 45.455 30.96 30.96 41.41 3.21
4147 6954 6.435277 ACAATCTATGCTGTTTCATCAAACCT 59.565 34.615 0.00 0.00 41.25 3.50
4165 6972 2.289072 ACCTGGTGTGATTCTCTTGTCG 60.289 50.000 0.00 0.00 0.00 4.35
4234 7041 2.030371 CTATCAGCTCTCACTCAGGCA 58.970 52.381 0.00 0.00 0.00 4.75
4347 7154 3.198068 CAACGGTCAGTATTGCAGCTAT 58.802 45.455 0.00 0.00 0.00 2.97
4371 7178 1.303317 ATGGGTCCTTTGTGACGCC 60.303 57.895 5.89 0.17 44.90 5.68
4386 7193 0.591170 ACGCCGATTTCAACCACTTG 59.409 50.000 0.00 0.00 0.00 3.16
4392 7199 4.533222 CCGATTTCAACCACTTGTAACAC 58.467 43.478 0.00 0.00 0.00 3.32
4400 7207 1.599797 ACTTGTAACACGGGGCAGC 60.600 57.895 0.00 0.00 0.00 5.25
4522 7329 3.661745 GCCTTCGGCGATAAGAAGA 57.338 52.632 11.76 0.00 44.76 2.87
4556 7363 1.985116 GCGAGGTCCTCCAGAAGGT 60.985 63.158 13.54 0.00 46.32 3.50
4619 7435 1.511850 CATCCGTGTTGCTCTTGTGA 58.488 50.000 0.00 0.00 0.00 3.58
4703 7521 2.258726 GGGTCCCGTGAACTGTTGC 61.259 63.158 0.00 0.00 0.00 4.17
4809 7627 1.373497 CCGTCATAGATGAGCGGCC 60.373 63.158 15.60 0.00 41.12 6.13
4812 7630 0.676184 GTCATAGATGAGCGGCCAGA 59.324 55.000 2.24 0.00 37.51 3.86
4876 7694 0.462937 TGTTACGCCCGCAGCATATT 60.463 50.000 0.00 0.00 44.04 1.28
4893 7711 4.749099 GCATATTGGTTGCACTTTGAAACA 59.251 37.500 0.00 0.00 39.90 2.83
4970 7801 4.691216 GGTGTGTTCTGACTGTATCTTTCC 59.309 45.833 0.00 0.00 0.00 3.13
5037 8024 1.889105 CGGATGCAGGATCAACGGG 60.889 63.158 4.07 0.00 31.91 5.28
5043 8030 4.073201 AGGATCAACGGGCATCCT 57.927 55.556 5.66 5.66 43.63 3.24
5044 8031 1.528824 AGGATCAACGGGCATCCTG 59.471 57.895 9.77 0.00 46.16 3.86
5062 10336 2.860735 CCTGTCTCTTATACTTGCACGC 59.139 50.000 0.00 0.00 0.00 5.34
5070 10344 2.867793 ATACTTGCACGCGCCATCCA 62.868 55.000 5.73 0.00 37.32 3.41
5071 10345 2.867793 TACTTGCACGCGCCATCCAT 62.868 55.000 5.73 0.00 37.32 3.41
5072 10346 3.055080 CTTGCACGCGCCATCCATT 62.055 57.895 5.73 0.00 37.32 3.16
5073 10347 1.713937 CTTGCACGCGCCATCCATTA 61.714 55.000 5.73 0.00 37.32 1.90
5074 10348 1.100463 TTGCACGCGCCATCCATTAT 61.100 50.000 5.73 0.00 37.32 1.28
5075 10349 0.250081 TGCACGCGCCATCCATTATA 60.250 50.000 5.73 0.00 37.32 0.98
5076 10350 0.443869 GCACGCGCCATCCATTATAG 59.556 55.000 5.73 0.00 0.00 1.31
5079 10353 0.673333 CGCGCCATCCATTATAGCCA 60.673 55.000 0.00 0.00 0.00 4.75
5080 10354 1.089920 GCGCCATCCATTATAGCCAG 58.910 55.000 0.00 0.00 0.00 4.85
5082 10356 1.467920 GCCATCCATTATAGCCAGCC 58.532 55.000 0.00 0.00 0.00 4.85
5083 10357 1.272092 GCCATCCATTATAGCCAGCCA 60.272 52.381 0.00 0.00 0.00 4.75
5084 10358 2.622452 GCCATCCATTATAGCCAGCCAT 60.622 50.000 0.00 0.00 0.00 4.40
5085 10359 3.021695 CCATCCATTATAGCCAGCCATG 58.978 50.000 0.00 0.00 0.00 3.66
5099 10401 3.751246 CATGGCCGCCACACAAGG 61.751 66.667 16.16 0.00 35.80 3.61
5128 10430 1.168407 GCTGCTTGGTCAGTCTTGCA 61.168 55.000 0.00 0.00 36.49 4.08
5133 10435 3.132646 TGCTTGGTCAGTCTTGCAAAAAT 59.867 39.130 0.00 0.00 0.00 1.82
5155 10463 4.982701 GCTGCAAGTGCCTGGGGT 62.983 66.667 0.00 0.00 41.18 4.95
5160 10473 2.116125 AAGTGCCTGGGGTCAAGC 59.884 61.111 0.00 0.00 0.00 4.01
5170 10483 2.749441 GGTCAAGCCTGGCTCTGC 60.749 66.667 23.61 14.04 38.25 4.26
5176 10489 2.033141 GCCTGGCTCTGCTGTTGA 59.967 61.111 12.43 0.00 0.00 3.18
5190 10503 1.282875 GTTGAAGCTTGCCCACGAC 59.717 57.895 2.10 0.00 0.00 4.34
5194 10507 1.294659 GAAGCTTGCCCACGACTCTG 61.295 60.000 2.10 0.00 0.00 3.35
5231 10544 1.509463 CGCTGCAATGCCTGTCATT 59.491 52.632 1.53 0.00 45.82 2.57
5257 10570 2.352651 ACGCAAGCATGTTGTAGCATAG 59.647 45.455 0.00 0.00 45.62 2.23
5260 10573 3.791122 GCAAGCATGTTGTAGCATAGCAG 60.791 47.826 0.00 0.00 0.00 4.24
5295 10608 1.989165 CTGTTGCAAGAGTAGACGAGC 59.011 52.381 15.22 0.00 0.00 5.03
5452 10773 4.934356 AGATTCATGCAGGTTTTTCCCTA 58.066 39.130 0.00 0.00 36.75 3.53
5593 10960 1.431496 AAAAAGATGCAATGCCGTGC 58.569 45.000 1.53 1.86 45.15 5.34
5600 10967 3.803082 CAATGCCGTGCGGAGGTG 61.803 66.667 15.45 4.32 37.50 4.00
5605 10972 4.143333 CCGTGCGGAGGTGGGTAG 62.143 72.222 4.35 0.00 37.50 3.18
5606 10973 3.379445 CGTGCGGAGGTGGGTAGT 61.379 66.667 0.00 0.00 0.00 2.73
5607 10974 2.939261 CGTGCGGAGGTGGGTAGTT 61.939 63.158 0.00 0.00 0.00 2.24
5608 10975 1.079336 GTGCGGAGGTGGGTAGTTC 60.079 63.158 0.00 0.00 0.00 3.01
5609 10976 1.534476 TGCGGAGGTGGGTAGTTCA 60.534 57.895 0.00 0.00 0.00 3.18
5610 10977 1.218316 GCGGAGGTGGGTAGTTCAG 59.782 63.158 0.00 0.00 0.00 3.02
5611 10978 1.898154 CGGAGGTGGGTAGTTCAGG 59.102 63.158 0.00 0.00 0.00 3.86
5612 10979 0.613853 CGGAGGTGGGTAGTTCAGGA 60.614 60.000 0.00 0.00 0.00 3.86
5613 10980 1.652947 GGAGGTGGGTAGTTCAGGAA 58.347 55.000 0.00 0.00 0.00 3.36
5646 11013 1.481871 CCAAATGCATTGAGGCCTCT 58.518 50.000 32.28 11.81 41.85 3.69
5663 11030 5.051153 GGCCTCTCCTAGAAATAGTTTTCG 58.949 45.833 0.00 0.00 44.88 3.46
5670 11037 7.228108 TCTCCTAGAAATAGTTTTCGCGAGATA 59.772 37.037 9.59 1.36 44.88 1.98
5738 11105 3.428045 GCATTTACATGGCAGACAAGACC 60.428 47.826 0.00 0.00 0.00 3.85
5765 11133 8.484214 ACCTAACATCTATGTAGTGATCACAT 57.516 34.615 27.02 14.56 40.80 3.21
5789 11157 1.888512 ACAGATTTTGGCGCAATCAGT 59.111 42.857 17.97 14.03 33.67 3.41
5816 11184 6.158598 GGGTAGAATAGTACACGACAAACAA 58.841 40.000 0.00 0.00 0.00 2.83
5920 11293 2.262423 AGTCTTTGACTGGCAGTTCC 57.738 50.000 22.98 10.59 41.76 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.159212 TGTCGTTTCTTTCTGTGGACGA 60.159 45.455 0.00 0.00 37.21 4.20
101 102 2.584608 CCGGAGGCGACCAATCTT 59.415 61.111 0.00 0.00 46.14 2.40
307 315 2.374504 AGGGACTCCATGCATAATGAGG 59.625 50.000 18.75 8.81 38.72 3.86
753 761 3.697045 AGGACACCATTTTGAACGTTTCA 59.303 39.130 0.46 0.00 38.04 2.69
754 762 4.041723 CAGGACACCATTTTGAACGTTTC 58.958 43.478 0.46 0.00 0.00 2.78
755 763 3.181480 CCAGGACACCATTTTGAACGTTT 60.181 43.478 0.46 0.00 0.00 3.60
756 764 2.360801 CCAGGACACCATTTTGAACGTT 59.639 45.455 0.00 0.00 0.00 3.99
757 765 1.953686 CCAGGACACCATTTTGAACGT 59.046 47.619 0.00 0.00 0.00 3.99
758 766 1.269448 CCCAGGACACCATTTTGAACG 59.731 52.381 0.00 0.00 0.00 3.95
759 767 1.000843 GCCCAGGACACCATTTTGAAC 59.999 52.381 0.00 0.00 0.00 3.18
760 768 1.337118 GCCCAGGACACCATTTTGAA 58.663 50.000 0.00 0.00 0.00 2.69
761 769 0.541764 GGCCCAGGACACCATTTTGA 60.542 55.000 0.00 0.00 0.00 2.69
762 770 1.543944 GGGCCCAGGACACCATTTTG 61.544 60.000 19.95 0.00 0.00 2.44
763 771 1.229177 GGGCCCAGGACACCATTTT 60.229 57.895 19.95 0.00 0.00 1.82
764 772 2.445155 GGGCCCAGGACACCATTT 59.555 61.111 19.95 0.00 0.00 2.32
765 773 4.047125 CGGGCCCAGGACACCATT 62.047 66.667 24.92 0.00 0.00 3.16
867 877 2.703409 CAGCGGTTACTGATGCGC 59.297 61.111 0.00 0.00 40.25 6.09
1061 1103 4.417854 TGAGGATGGAGAATGGAATGGAAT 59.582 41.667 0.00 0.00 0.00 3.01
1249 1309 2.446802 GGGGCGAGGGAGGAAGAT 60.447 66.667 0.00 0.00 0.00 2.40
1298 1361 2.482721 GAGCGGAAAAAGTCGGATGAAA 59.517 45.455 0.00 0.00 0.00 2.69
1362 1425 5.220854 CCAAGCATTTCTATAACCAGAACCG 60.221 44.000 0.00 0.00 34.31 4.44
1491 1556 3.461773 CGGCACCGTCTCAGGGAT 61.462 66.667 0.00 0.00 35.02 3.85
1542 1607 4.380781 TCGCGCGGGGACAAATCA 62.381 61.111 31.69 2.53 0.00 2.57
1599 1664 5.640732 CAGGCATATTTGTTTGTCAGGTAC 58.359 41.667 0.00 0.00 0.00 3.34
1682 1750 2.756400 GGGACCCACATGTCAGCA 59.244 61.111 5.33 0.00 36.97 4.41
1730 1798 7.336427 ACGTAATTGGTTCAAATATAAACCGGA 59.664 33.333 9.46 0.00 46.49 5.14
1737 1805 7.674472 GCACGACACGTAATTGGTTCAAATATA 60.674 37.037 0.00 0.00 38.32 0.86
1738 1806 6.539324 CACGACACGTAATTGGTTCAAATAT 58.461 36.000 0.00 0.00 38.32 1.28
1778 1846 1.321474 CTTTGGCAACTGCTCCTCAA 58.679 50.000 0.00 0.00 41.70 3.02
1780 1848 1.000938 CAACTTTGGCAACTGCTCCTC 60.001 52.381 0.00 0.00 41.70 3.71
1851 1922 1.511768 GTAGAGCACTGACCCGGTC 59.488 63.158 10.96 10.96 0.00 4.79
1911 2073 0.317603 GAGAATGGATGCACATGCGC 60.318 55.000 0.00 0.00 45.83 6.09
1912 2074 1.018910 TGAGAATGGATGCACATGCG 58.981 50.000 0.00 0.00 45.83 4.73
2022 2184 3.554129 GCACTTTCATGTGGGGTAAAACC 60.554 47.826 0.00 0.00 38.31 3.27
2141 2308 0.726827 TAGAATTGCGCGGCAGAAAG 59.273 50.000 8.83 0.00 40.61 2.62
2175 2342 1.645034 CTACATGGCTCGAACAGTGG 58.355 55.000 0.00 0.00 0.00 4.00
2232 3696 8.798859 ATATTAGGCACATCATGGAATTAGTC 57.201 34.615 0.00 0.00 0.00 2.59
2233 3697 8.609483 AGATATTAGGCACATCATGGAATTAGT 58.391 33.333 0.00 0.00 0.00 2.24
2234 3698 8.890718 CAGATATTAGGCACATCATGGAATTAG 58.109 37.037 0.00 0.00 0.00 1.73
2236 3700 7.176165 CACAGATATTAGGCACATCATGGAATT 59.824 37.037 0.00 0.00 0.00 2.17
2238 3702 5.999600 CACAGATATTAGGCACATCATGGAA 59.000 40.000 0.00 0.00 0.00 3.53
2239 3703 5.072193 ACACAGATATTAGGCACATCATGGA 59.928 40.000 0.00 0.00 0.00 3.41
2240 3704 5.311265 ACACAGATATTAGGCACATCATGG 58.689 41.667 0.00 0.00 0.00 3.66
2241 3705 7.967890 TTACACAGATATTAGGCACATCATG 57.032 36.000 0.00 0.00 0.00 3.07
2242 3706 9.578576 AAATTACACAGATATTAGGCACATCAT 57.421 29.630 0.00 0.00 0.00 2.45
2243 3707 8.978874 AAATTACACAGATATTAGGCACATCA 57.021 30.769 0.00 0.00 0.00 3.07
2244 3708 9.056005 TGAAATTACACAGATATTAGGCACATC 57.944 33.333 0.00 0.00 0.00 3.06
2245 3709 8.978874 TGAAATTACACAGATATTAGGCACAT 57.021 30.769 0.00 0.00 0.00 3.21
2246 3710 8.046708 ACTGAAATTACACAGATATTAGGCACA 58.953 33.333 12.11 0.00 37.54 4.57
2247 3711 8.438676 ACTGAAATTACACAGATATTAGGCAC 57.561 34.615 12.11 0.00 37.54 5.01
2296 3761 6.732154 CAAATCGGCAACATAGAATGAGAAT 58.268 36.000 0.00 0.00 0.00 2.40
2320 3785 3.495276 GCTTTCAGGGAGGGAGTAATAGC 60.495 52.174 0.00 0.00 0.00 2.97
2403 3868 9.178758 GTTCTGAAGGTTTGTAATCCAGATATT 57.821 33.333 0.00 0.00 0.00 1.28
2503 5289 1.745653 GACCTGGCCACTAATTTCAGC 59.254 52.381 0.00 0.00 0.00 4.26
2526 5312 2.802247 TCAGTCGCAACTTGTCATTCAG 59.198 45.455 0.00 0.00 31.71 3.02
2594 5380 2.135139 TGAAACGTCATCAGCAGTGAC 58.865 47.619 0.00 6.18 41.91 3.67
2605 5391 8.511321 ACTATGCTTAAAATGAATGAAACGTCA 58.489 29.630 0.00 0.00 38.41 4.35
2793 5597 3.882888 TCTCAAATGTTTTTCGAGCTGGT 59.117 39.130 0.00 0.00 0.00 4.00
2826 5630 2.037641 AGGCTCAAACTTTGAAATGGCC 59.962 45.455 18.45 18.45 43.67 5.36
2902 5706 3.845178 CACATGATCATGCAGCAGTTTT 58.155 40.909 31.17 9.42 42.39 2.43
3052 5857 1.301087 TTAACGCACAGTGGGACCG 60.301 57.895 23.66 10.42 34.12 4.79
3098 5903 4.885907 ACTGTTAGCCATGAAATCAGGATG 59.114 41.667 0.00 0.00 37.54 3.51
3101 5906 5.471456 GGATACTGTTAGCCATGAAATCAGG 59.529 44.000 0.00 0.00 33.52 3.86
3120 5925 8.542953 CGGGTAATAAACTAAAAACGAGGATAC 58.457 37.037 0.00 0.00 0.00 2.24
3127 5932 7.017055 CCTTCACGGGTAATAAACTAAAAACG 58.983 38.462 0.00 0.00 0.00 3.60
3171 5976 0.804364 CCGCTATTGTTTGCTCTGCA 59.196 50.000 0.00 0.00 36.47 4.41
3272 6077 8.501580 AGTTAAACTAGACGAACAAAAATAGCC 58.498 33.333 0.00 0.00 0.00 3.93
3351 6156 9.203163 AGTTGCTACTTCCTACTAAGATATTGT 57.797 33.333 0.00 0.00 0.00 2.71
3369 6174 2.034076 CAAACGTTCGCAAGTTGCTAC 58.966 47.619 24.61 19.69 42.25 3.58
3370 6175 1.595976 GCAAACGTTCGCAAGTTGCTA 60.596 47.619 24.61 12.27 42.25 3.49
3371 6176 0.865639 GCAAACGTTCGCAAGTTGCT 60.866 50.000 24.61 3.40 42.25 3.91
3372 6177 1.136872 TGCAAACGTTCGCAAGTTGC 61.137 50.000 12.30 18.18 40.69 4.17
3373 6178 1.476074 ATGCAAACGTTCGCAAGTTG 58.524 45.000 19.08 3.62 42.37 3.16
3374 6179 3.188460 AGATATGCAAACGTTCGCAAGTT 59.812 39.130 19.08 4.40 42.37 2.66
3375 6180 2.742053 AGATATGCAAACGTTCGCAAGT 59.258 40.909 19.08 9.68 42.37 3.16
3395 6200 8.125448 GCAGGTCATCTATAGCTTTTGTAAAAG 58.875 37.037 11.71 11.71 46.25 2.27
3429 6234 0.666913 AGTGCTTCTGTGCTTTGCTG 59.333 50.000 0.00 0.00 0.00 4.41
3472 6277 7.334421 TGATTAGACATTGGCTTGAGAAGTAAC 59.666 37.037 0.00 0.00 0.00 2.50
3485 6290 3.455910 TGGAGAGGGTGATTAGACATTGG 59.544 47.826 0.00 0.00 0.00 3.16
3501 6306 6.565234 ACTTACTAAATCATCGTGTGGAGAG 58.435 40.000 0.00 0.00 0.00 3.20
3548 6353 2.193536 AAAGCAACCACCACCGAGC 61.194 57.895 0.00 0.00 0.00 5.03
3648 6453 9.301153 GAAGAAATTTAAGCACAGAAAGAAACA 57.699 29.630 0.00 0.00 0.00 2.83
3690 6495 8.597167 TCCTCTCAATCTCAACTATCTGAAAAA 58.403 33.333 0.00 0.00 0.00 1.94
3955 6762 5.336213 CCAAATGATCTTTGTGACTCCAAGG 60.336 44.000 13.21 0.00 0.00 3.61
3967 6774 5.399497 CCCCAGAGGTATCCAAATGATCTTT 60.399 44.000 0.00 0.00 34.76 2.52
3991 6798 4.731480 CACTTTTTGTTGTTACCGTGTAGC 59.269 41.667 0.00 0.00 0.00 3.58
4006 6813 7.492344 ACCTTTTAACTGATGAAGCACTTTTTG 59.508 33.333 0.00 0.00 0.00 2.44
4007 6814 7.555965 ACCTTTTAACTGATGAAGCACTTTTT 58.444 30.769 0.00 0.00 0.00 1.94
4014 6821 6.739112 ACAGAAACCTTTTAACTGATGAAGC 58.261 36.000 0.00 0.00 33.53 3.86
4018 6825 7.013274 TGAGGAACAGAAACCTTTTAACTGATG 59.987 37.037 0.00 0.00 36.57 3.07
4023 6830 6.694877 AGTGAGGAACAGAAACCTTTTAAC 57.305 37.500 0.00 0.00 36.57 2.01
4084 6891 6.749139 TGTATCCTCATCACCTAGAAAATCG 58.251 40.000 0.00 0.00 0.00 3.34
4120 6927 6.441093 TTGATGAAACAGCATAGATTGTCC 57.559 37.500 0.00 0.00 27.29 4.02
4127 6934 4.460382 ACCAGGTTTGATGAAACAGCATAG 59.540 41.667 10.02 0.00 42.95 2.23
4147 6954 2.547855 CCACGACAAGAGAATCACACCA 60.548 50.000 0.00 0.00 37.82 4.17
4165 6972 0.797249 CGTTCTCGTCATCGGTCCAC 60.797 60.000 0.00 0.00 37.69 4.02
4234 7041 4.514577 CGCCCCTTCGCATCGACT 62.515 66.667 0.00 0.00 34.89 4.18
4347 7154 1.144708 TCACAAAGGACCCATGAAGCA 59.855 47.619 0.00 0.00 0.00 3.91
4371 7178 4.208355 CGTGTTACAAGTGGTTGAAATCG 58.792 43.478 0.00 0.00 37.10 3.34
4400 7207 0.109781 CCCCTGAAAACAATCACGCG 60.110 55.000 3.53 3.53 0.00 6.01
4402 7209 0.958091 TGCCCCTGAAAACAATCACG 59.042 50.000 0.00 0.00 0.00 4.35
4492 7299 2.240500 CGAAGGCTGGCGCTATGAC 61.241 63.158 7.64 0.00 36.09 3.06
4556 7363 5.485353 AGACTAACCTCATGATCAGGAAACA 59.515 40.000 11.74 0.00 34.75 2.83
4619 7435 2.149578 CAGTCACTGCTTGCTTTAGCT 58.850 47.619 0.00 0.00 41.76 3.32
4623 7439 1.406539 CCAACAGTCACTGCTTGCTTT 59.593 47.619 4.13 0.00 34.37 3.51
4703 7521 1.575922 CACCATCACAACCTGCACG 59.424 57.895 0.00 0.00 0.00 5.34
4809 7627 4.981415 GCTTGGCTGCCTTTTCTG 57.019 55.556 21.03 4.72 0.00 3.02
4819 7637 2.682494 CCAATGCAGGGCTTGGCT 60.682 61.111 3.93 0.00 35.84 4.75
4820 7638 3.777910 CCCAATGCAGGGCTTGGC 61.778 66.667 10.74 0.00 43.10 4.52
4857 7675 0.462937 AATATGCTGCGGGCGTAACA 60.463 50.000 7.35 0.00 44.40 2.41
4876 7694 1.468908 CGCTGTTTCAAAGTGCAACCA 60.469 47.619 0.00 0.00 37.80 3.67
4893 7711 4.891727 CTATTGGCCCGCGACGCT 62.892 66.667 19.02 0.00 0.00 5.07
4956 7787 4.661222 TGCAAATGGGAAAGATACAGTCA 58.339 39.130 0.00 0.00 0.00 3.41
4993 7831 2.767960 CCCATAGGGCAAGCAGAAAAAT 59.232 45.455 0.00 0.00 35.35 1.82
5037 8024 4.509600 GTGCAAGTATAAGAGACAGGATGC 59.490 45.833 0.00 0.00 42.53 3.91
5043 8030 2.526077 CGCGTGCAAGTATAAGAGACA 58.474 47.619 0.00 0.00 0.00 3.41
5044 8031 1.255600 GCGCGTGCAAGTATAAGAGAC 59.744 52.381 17.66 0.00 42.15 3.36
5062 10336 1.089920 GCTGGCTATAATGGATGGCG 58.910 55.000 0.00 0.00 42.82 5.69
5082 10356 3.751246 CCTTGTGTGGCGGCCATG 61.751 66.667 26.68 12.58 35.28 3.66
5110 10412 1.311859 TTGCAAGACTGACCAAGCAG 58.688 50.000 0.00 0.00 41.63 4.24
5114 10416 3.795150 GCGATTTTTGCAAGACTGACCAA 60.795 43.478 0.00 0.00 0.00 3.67
5128 10430 1.774639 CACTTGCAGCAGCGATTTTT 58.225 45.000 0.00 0.00 46.23 1.94
5133 10435 4.631247 AGGCACTTGCAGCAGCGA 62.631 61.111 3.15 0.00 46.23 4.93
5155 10463 2.060567 AACAGCAGAGCCAGGCTTGA 62.061 55.000 17.46 0.00 39.88 3.02
5160 10473 2.552802 CTTCAACAGCAGAGCCAGG 58.447 57.895 0.00 0.00 0.00 4.45
5170 10483 1.165907 TCGTGGGCAAGCTTCAACAG 61.166 55.000 0.00 0.00 0.00 3.16
5176 10489 1.302033 CAGAGTCGTGGGCAAGCTT 60.302 57.895 0.00 0.00 0.00 3.74
5187 10500 1.005748 TCTGTGGCTTGCAGAGTCG 60.006 57.895 3.59 0.00 37.98 4.18
5190 10503 1.005748 TCGTCTGTGGCTTGCAGAG 60.006 57.895 7.11 0.00 42.80 3.35
5194 10507 2.666190 TGCTCGTCTGTGGCTTGC 60.666 61.111 0.00 0.00 0.00 4.01
5221 10534 2.170738 GCGTTAGCAATGACAGGCA 58.829 52.632 4.88 0.00 44.35 4.75
5232 10545 2.774007 CTACAACATGCTTGCGTTAGC 58.226 47.619 0.00 4.25 45.41 3.09
5233 10546 2.159430 TGCTACAACATGCTTGCGTTAG 59.841 45.455 0.00 0.00 0.00 2.34
5234 10547 2.147150 TGCTACAACATGCTTGCGTTA 58.853 42.857 0.00 0.00 0.00 3.18
5236 10549 1.167851 ATGCTACAACATGCTTGCGT 58.832 45.000 0.00 0.28 0.00 5.24
5237 10550 2.852143 GCTATGCTACAACATGCTTGCG 60.852 50.000 0.00 0.00 0.00 4.85
5238 10551 2.097954 TGCTATGCTACAACATGCTTGC 59.902 45.455 0.00 0.00 0.00 4.01
5257 10570 0.537371 AGTTTGTAGCACCCACCTGC 60.537 55.000 0.00 0.00 37.44 4.85
5260 10573 1.336755 CAACAGTTTGTAGCACCCACC 59.663 52.381 0.00 0.00 0.00 4.61
5270 10583 3.555956 CGTCTACTCTTGCAACAGTTTGT 59.444 43.478 12.79 0.43 34.90 2.83
5282 10595 0.961358 AGCACCGCTCGTCTACTCTT 60.961 55.000 0.00 0.00 30.62 2.85
5408 10721 5.302568 TCTCCGCCTAAAATCGTAGGATTAA 59.697 40.000 10.88 2.72 43.06 1.40
5413 10726 3.662247 ATCTCCGCCTAAAATCGTAGG 57.338 47.619 0.00 0.00 43.23 3.18
5474 10795 6.800543 TGCTAAGTCTCATCTAACATCTGTC 58.199 40.000 0.00 0.00 0.00 3.51
5580 10947 3.511595 CTCCGCACGGCATTGCAT 61.512 61.111 11.39 0.00 43.15 3.96
5588 10955 4.143333 CTACCCACCTCCGCACGG 62.143 72.222 1.73 1.73 0.00 4.94
5589 10956 2.830704 GAACTACCCACCTCCGCACG 62.831 65.000 0.00 0.00 0.00 5.34
5590 10957 1.079336 GAACTACCCACCTCCGCAC 60.079 63.158 0.00 0.00 0.00 5.34
5591 10958 1.534476 TGAACTACCCACCTCCGCA 60.534 57.895 0.00 0.00 0.00 5.69
5592 10959 1.218316 CTGAACTACCCACCTCCGC 59.782 63.158 0.00 0.00 0.00 5.54
5593 10960 0.613853 TCCTGAACTACCCACCTCCG 60.614 60.000 0.00 0.00 0.00 4.63
5595 10962 1.066071 GCTTCCTGAACTACCCACCTC 60.066 57.143 0.00 0.00 0.00 3.85
5596 10963 0.984995 GCTTCCTGAACTACCCACCT 59.015 55.000 0.00 0.00 0.00 4.00
5597 10964 0.984995 AGCTTCCTGAACTACCCACC 59.015 55.000 0.00 0.00 0.00 4.61
5598 10965 1.623811 TCAGCTTCCTGAACTACCCAC 59.376 52.381 0.00 0.00 44.79 4.61
5599 10966 2.024176 TCAGCTTCCTGAACTACCCA 57.976 50.000 0.00 0.00 44.79 4.51
5607 10974 0.952497 CAGCGCTTTCAGCTTCCTGA 60.952 55.000 7.50 0.00 46.03 3.86
5608 10975 1.500844 CAGCGCTTTCAGCTTCCTG 59.499 57.895 7.50 0.00 44.06 3.86
5609 10976 2.331132 GCAGCGCTTTCAGCTTCCT 61.331 57.895 7.50 0.00 44.06 3.36
5610 10977 2.177778 GCAGCGCTTTCAGCTTCC 59.822 61.111 7.50 0.00 44.06 3.46
5611 10978 2.133742 TTGGCAGCGCTTTCAGCTTC 62.134 55.000 7.50 0.00 44.06 3.86
5612 10979 1.737355 TTTGGCAGCGCTTTCAGCTT 61.737 50.000 7.50 0.00 44.06 3.74
5626 10993 0.179092 GAGGCCTCAATGCATTTGGC 60.179 55.000 30.58 30.58 45.13 4.52
5632 10999 1.126488 CTAGGAGAGGCCTCAATGCA 58.874 55.000 33.90 13.87 46.97 3.96
5637 11004 4.544564 ACTATTTCTAGGAGAGGCCTCA 57.455 45.455 33.90 13.00 46.97 3.86
5640 11007 5.051153 CGAAAACTATTTCTAGGAGAGGCC 58.949 45.833 0.00 0.00 42.29 5.19
5646 11013 5.571784 TCTCGCGAAAACTATTTCTAGGA 57.428 39.130 11.33 0.00 42.29 2.94
5663 11030 7.487829 TCCTATTTTGTTGCATTTTTATCTCGC 59.512 33.333 0.00 0.00 0.00 5.03
5670 11037 9.558396 TTTCTGATCCTATTTTGTTGCATTTTT 57.442 25.926 0.00 0.00 0.00 1.94
5692 11059 8.199449 TGCAGAAATTTTGATCTCAGTTTTTCT 58.801 29.630 0.00 0.00 33.36 2.52
5693 11060 8.356533 TGCAGAAATTTTGATCTCAGTTTTTC 57.643 30.769 0.00 0.00 0.00 2.29
5694 11061 8.897872 ATGCAGAAATTTTGATCTCAGTTTTT 57.102 26.923 0.00 0.00 0.00 1.94
5731 11098 6.374417 ACATAGATGTTAGGTTGGTCTTGT 57.626 37.500 0.00 0.00 37.90 3.16
5733 11100 7.399191 TCACTACATAGATGTTAGGTTGGTCTT 59.601 37.037 0.00 0.00 41.97 3.01
5738 11105 8.197439 TGTGATCACTACATAGATGTTAGGTTG 58.803 37.037 25.55 0.00 41.97 3.77
5765 11133 1.028130 TTGCGCCAAAATCTGTGTGA 58.972 45.000 4.18 0.00 0.00 3.58
5770 11138 2.642139 ACTGATTGCGCCAAAATCTG 57.358 45.000 18.21 18.21 38.34 2.90
5771 11139 3.319755 CAAACTGATTGCGCCAAAATCT 58.680 40.909 16.90 0.00 35.48 2.40
5789 11157 5.981088 TGTCGTGTACTATTCTACCCAAA 57.019 39.130 0.00 0.00 0.00 3.28
5816 11184 3.612479 GCGACTTTGTGATGCCTTGAAAT 60.612 43.478 0.00 0.00 0.00 2.17
5863 11235 8.739972 ACAGTTCAAATTGTTCTGACTTTAGTT 58.260 29.630 19.62 1.17 0.00 2.24
5876 11248 4.024048 CCAGCGAAGTACAGTTCAAATTGT 60.024 41.667 0.00 0.00 33.25 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.