Multiple sequence alignment - TraesCS2D01G328700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G328700 chr2D 100.000 4837 0 0 1 4837 421827324 421822488 0.000000e+00 8933.0
1 TraesCS2D01G328700 chr2D 87.983 233 25 3 4194 4425 627641137 627640907 6.170000e-69 272.0
2 TraesCS2D01G328700 chr2D 83.529 255 35 7 4174 4426 627640266 627640515 1.050000e-56 231.0
3 TraesCS2D01G328700 chr2D 90.769 65 2 2 4424 4484 567803187 567803251 3.100000e-12 84.2
4 TraesCS2D01G328700 chr2D 95.122 41 1 1 2151 2191 421825016 421825055 4.040000e-06 63.9
5 TraesCS2D01G328700 chr2D 95.122 41 1 1 2270 2309 421825134 421825174 4.040000e-06 63.9
6 TraesCS2D01G328700 chr2B 96.520 1868 58 6 2307 4170 494287172 494285308 0.000000e+00 3083.0
7 TraesCS2D01G328700 chr2B 89.903 2258 134 34 1 2209 494290322 494288110 0.000000e+00 2820.0
8 TraesCS2D01G328700 chr2B 85.472 413 44 9 4194 4597 32463477 32463882 2.690000e-112 416.0
9 TraesCS2D01G328700 chr2B 90.710 183 11 3 4424 4604 32650425 32650247 6.260000e-59 239.0
10 TraesCS2D01G328700 chr2B 95.161 62 3 0 4598 4659 32505248 32505309 1.110000e-16 99.0
11 TraesCS2D01G328700 chr2B 95.161 62 3 0 4598 4659 32649047 32648986 1.110000e-16 99.0
12 TraesCS2D01G328700 chr2B 94.286 35 1 1 2270 2303 494288128 494288162 9.000000e-03 52.8
13 TraesCS2D01G328700 chr2A 97.618 1637 34 4 2306 3938 568311803 568310168 0.000000e+00 2802.0
14 TraesCS2D01G328700 chr2A 96.683 1417 46 1 793 2209 568314195 568312780 0.000000e+00 2355.0
15 TraesCS2D01G328700 chr2A 84.547 673 71 24 145 794 568316868 568316206 1.900000e-178 636.0
16 TraesCS2D01G328700 chr2A 93.846 260 14 2 3915 4173 568309811 568309553 1.630000e-104 390.0
17 TraesCS2D01G328700 chr2A 92.683 41 2 1 2301 2340 768478219 768478259 1.880000e-04 58.4
18 TraesCS2D01G328700 chr2A 94.595 37 1 1 2270 2305 568312798 568312834 6.760000e-04 56.5
19 TraesCS2D01G328700 chr1B 91.903 247 20 0 4176 4422 516123932 516124178 3.580000e-91 346.0
20 TraesCS2D01G328700 chr7A 89.046 283 23 6 4559 4837 80919335 80919057 1.290000e-90 344.0
21 TraesCS2D01G328700 chr7A 89.691 97 8 1 4519 4613 80920737 80920641 6.570000e-24 122.0
22 TraesCS2D01G328700 chr6B 93.578 109 7 0 4613 4721 686808206 686808314 3.870000e-36 163.0
23 TraesCS2D01G328700 chr3D 85.455 165 12 9 4175 4337 379402054 379401900 1.390000e-35 161.0
24 TraesCS2D01G328700 chr4A 85.714 133 16 3 4180 4312 697823802 697823673 2.350000e-28 137.0
25 TraesCS2D01G328700 chr5B 86.555 119 12 4 4174 4292 419764392 419764506 1.410000e-25 128.0
26 TraesCS2D01G328700 chr1A 85.345 116 16 1 4705 4819 548234862 548234977 8.500000e-23 119.0
27 TraesCS2D01G328700 chr1A 90.769 65 2 2 4424 4484 585682591 585682527 3.100000e-12 84.2
28 TraesCS2D01G328700 chr1A 96.000 50 2 0 4493 4542 548233771 548233820 1.120000e-11 82.4
29 TraesCS2D01G328700 chr3A 81.579 114 9 7 4383 4484 525290336 525290223 3.100000e-12 84.2
30 TraesCS2D01G328700 chr3A 90.769 65 2 2 4424 4484 691394221 691394157 3.100000e-12 84.2
31 TraesCS2D01G328700 chr3A 86.885 61 8 0 4424 4484 743690214 743690274 8.690000e-08 69.4
32 TraesCS2D01G328700 chr7D 85.714 77 8 2 4710 4784 543095622 543095547 1.440000e-10 78.7
33 TraesCS2D01G328700 chr6A 86.154 65 5 1 4424 4484 236359068 236359132 3.120000e-07 67.6
34 TraesCS2D01G328700 chr4D 86.154 65 5 1 4424 4484 73983198 73983134 3.120000e-07 67.6
35 TraesCS2D01G328700 chr5D 100.000 30 0 0 2306 2335 550051602 550051573 6.760000e-04 56.5
36 TraesCS2D01G328700 chr1D 82.540 63 11 0 4249 4311 395194049 395193987 6.760000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G328700 chr2D 421822488 421827324 4836 True 8933.00 8933 100.0000 1 4837 1 chr2D.!!$R1 4836
1 TraesCS2D01G328700 chr2B 494285308 494290322 5014 True 2951.50 3083 93.2115 1 4170 2 chr2B.!!$R2 4169
2 TraesCS2D01G328700 chr2A 568309553 568316868 7315 True 1545.75 2802 93.1735 145 4173 4 chr2A.!!$R1 4028
3 TraesCS2D01G328700 chr7A 80919057 80920737 1680 True 233.00 344 89.3685 4519 4837 2 chr7A.!!$R1 318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.389391 CAGTCACACCACCTTCGAGT 59.611 55.0 0.00 0.00 0.00 4.18 F
1107 3187 0.995728 GCTTCGCTAACAGTGAGAGC 59.004 55.0 0.00 3.95 35.96 4.09 F
1911 3991 0.318762 AGGAGCTTGTCGAGGTGAAC 59.681 55.0 0.00 0.00 35.91 3.18 F
2251 4592 0.534203 TGCCACAGGTCGACTTTTCC 60.534 55.0 16.46 0.00 0.00 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1443 3523 1.381076 CTCCTGGGCCGGGTTTTTA 59.619 57.895 30.37 10.5 0.00 1.52 R
2235 4330 0.249741 ACGGGAAAAGTCGACCTGTG 60.250 55.000 13.01 0.0 41.09 3.66 R
3416 6406 4.359706 GCAGTTTACAAAGGAACCACAAG 58.640 43.478 0.00 0.0 0.00 3.16 R
4245 7619 0.470456 AGGCCGACGGGGTCATATAA 60.470 55.000 17.22 0.0 45.54 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.330192 TGGCAGTCACACCACCTT 58.670 55.556 0.00 0.00 0.00 3.50
25 26 1.961277 GGCAGTCACACCACCTTCG 60.961 63.158 0.00 0.00 0.00 3.79
28 29 0.389391 CAGTCACACCACCTTCGAGT 59.611 55.000 0.00 0.00 0.00 4.18
43 44 5.533903 ACCTTCGAGTGTCTTAGTAACAAGA 59.466 40.000 0.00 0.00 32.11 3.02
46 47 5.950883 TCGAGTGTCTTAGTAACAAGATGG 58.049 41.667 0.00 0.00 36.93 3.51
71 72 4.344390 CCACTTAAGGACCTAGGACATACC 59.656 50.000 17.98 10.27 39.35 2.73
74 75 5.043582 ACTTAAGGACCTAGGACATACCAGA 60.044 44.000 17.98 0.60 42.04 3.86
79 80 3.288964 ACCTAGGACATACCAGACTTCG 58.711 50.000 17.98 0.00 42.04 3.79
80 81 3.288964 CCTAGGACATACCAGACTTCGT 58.711 50.000 1.05 0.00 42.04 3.85
114 115 1.107114 TCTCGAAGCTTCTAGCCTGG 58.893 55.000 23.50 6.89 43.77 4.45
119 120 2.416893 CGAAGCTTCTAGCCTGGTTTTC 59.583 50.000 23.50 0.00 43.77 2.29
130 131 5.712152 AGCCTGGTTTTCTATTTTCTGTG 57.288 39.130 0.00 0.00 0.00 3.66
136 137 9.981114 CCTGGTTTTCTATTTTCTGTGTATTTT 57.019 29.630 0.00 0.00 0.00 1.82
231 233 7.553881 TTTTATGAACCATTTTCCGCAAAAA 57.446 28.000 0.00 0.00 40.98 1.94
277 280 5.283717 CGTGGATTTATTTCAAACAAGCGAG 59.716 40.000 0.00 0.00 0.00 5.03
284 287 8.581057 TTTATTTCAAACAAGCGAGCATTTTA 57.419 26.923 0.00 0.00 0.00 1.52
291 294 9.035607 TCAAACAAGCGAGCATTTTAAAATTTA 57.964 25.926 10.77 0.00 0.00 1.40
298 301 7.489113 AGCGAGCATTTTAAAATTTATGACCAG 59.511 33.333 10.77 0.00 0.00 4.00
367 370 7.739498 AACTCAGGAACGCTTCTTAAAATTA 57.261 32.000 0.00 0.00 0.00 1.40
407 410 9.950858 ATTCGTTATCATGTTTTAAAATTTGCG 57.049 25.926 3.52 4.74 0.00 4.85
409 412 9.347934 TCGTTATCATGTTTTAAAATTTGCGAT 57.652 25.926 3.52 5.49 0.00 4.58
410 413 9.605305 CGTTATCATGTTTTAAAATTTGCGATC 57.395 29.630 3.52 0.00 0.00 3.69
587 641 3.713826 TTTAAGGGGCAAGTGACTAGG 57.286 47.619 0.00 0.00 0.00 3.02
626 683 2.803956 GCCTAAAACGCACAGTCTACAA 59.196 45.455 0.00 0.00 0.00 2.41
636 693 2.476619 CACAGTCTACAAACTTCAGCGG 59.523 50.000 0.00 0.00 0.00 5.52
726 786 4.380531 CATAACGCACATTCTCATAGGGT 58.619 43.478 0.00 0.00 0.00 4.34
899 2979 2.815647 CACGCCGCCTCTTCTTCC 60.816 66.667 0.00 0.00 0.00 3.46
922 3002 1.657804 AGGAATTCCCTCGAACACCT 58.342 50.000 21.22 0.00 43.31 4.00
1032 3112 4.241555 CCCTTATCCGCTGCCGCT 62.242 66.667 0.00 0.00 0.00 5.52
1107 3187 0.995728 GCTTCGCTAACAGTGAGAGC 59.004 55.000 0.00 3.95 35.96 4.09
1210 3290 2.579738 GCGAGGTGGAGAAGGACC 59.420 66.667 0.00 0.00 0.00 4.46
1911 3991 0.318762 AGGAGCTTGTCGAGGTGAAC 59.681 55.000 0.00 0.00 35.91 3.18
1931 4011 8.643324 GGTGAACATATATGACCTCTCTACTTT 58.357 37.037 19.63 0.00 0.00 2.66
2115 4210 4.705507 AGTAAGGTCTTGCTAATCTCGTCA 59.294 41.667 0.00 0.00 33.77 4.35
2121 4216 5.233263 GGTCTTGCTAATCTCGTCAATTCTC 59.767 44.000 0.00 0.00 0.00 2.87
2209 4304 2.657143 TGCCAACTAAACTTTTCCCGT 58.343 42.857 0.00 0.00 0.00 5.28
2210 4305 3.818180 TGCCAACTAAACTTTTCCCGTA 58.182 40.909 0.00 0.00 0.00 4.02
2214 4309 5.278610 GCCAACTAAACTTTTCCCGTATTGT 60.279 40.000 0.00 0.00 0.00 2.71
2215 4310 6.736519 GCCAACTAAACTTTTCCCGTATTGTT 60.737 38.462 0.00 0.00 0.00 2.83
2216 4311 7.204604 CCAACTAAACTTTTCCCGTATTGTTT 58.795 34.615 0.00 0.00 0.00 2.83
2217 4312 7.168469 CCAACTAAACTTTTCCCGTATTGTTTG 59.832 37.037 0.00 0.00 0.00 2.93
2218 4313 7.337480 ACTAAACTTTTCCCGTATTGTTTGT 57.663 32.000 0.00 0.00 0.00 2.83
2219 4314 8.449251 ACTAAACTTTTCCCGTATTGTTTGTA 57.551 30.769 0.00 0.00 0.00 2.41
2220 4315 8.901793 ACTAAACTTTTCCCGTATTGTTTGTAA 58.098 29.630 0.00 0.00 0.00 2.41
2221 4316 9.902196 CTAAACTTTTCCCGTATTGTTTGTAAT 57.098 29.630 0.00 0.00 0.00 1.89
2223 4318 9.602568 AAACTTTTCCCGTATTGTTTGTAATTT 57.397 25.926 0.00 0.00 0.00 1.82
2224 4319 8.806177 ACTTTTCCCGTATTGTTTGTAATTTC 57.194 30.769 0.00 0.00 0.00 2.17
2225 4320 8.414778 ACTTTTCCCGTATTGTTTGTAATTTCA 58.585 29.630 0.00 0.00 0.00 2.69
2226 4321 9.250624 CTTTTCCCGTATTGTTTGTAATTTCAA 57.749 29.630 0.00 0.00 0.00 2.69
2227 4322 9.765795 TTTTCCCGTATTGTTTGTAATTTCAAT 57.234 25.926 0.00 0.00 35.24 2.57
2230 4325 9.451002 TCCCGTATTGTTTGTAATTTCAATAGA 57.549 29.630 0.00 0.00 34.75 1.98
2237 4332 8.755696 TGTTTGTAATTTCAATAGAATGCCAC 57.244 30.769 0.00 0.00 32.89 5.01
2239 4334 8.863049 GTTTGTAATTTCAATAGAATGCCACAG 58.137 33.333 0.00 0.00 32.89 3.66
2240 4335 7.099266 TGTAATTTCAATAGAATGCCACAGG 57.901 36.000 0.00 0.00 32.89 4.00
2243 4584 2.905075 TCAATAGAATGCCACAGGTCG 58.095 47.619 0.00 0.00 0.00 4.79
2245 4586 2.604046 ATAGAATGCCACAGGTCGAC 57.396 50.000 7.13 7.13 0.00 4.20
2251 4592 0.534203 TGCCACAGGTCGACTTTTCC 60.534 55.000 16.46 0.00 0.00 3.13
2253 4594 0.949105 CCACAGGTCGACTTTTCCCG 60.949 60.000 16.46 0.00 0.00 5.14
2258 4599 2.928116 CAGGTCGACTTTTCCCGTATTC 59.072 50.000 16.46 0.00 0.00 1.75
2260 4601 3.119209 AGGTCGACTTTTCCCGTATTCTC 60.119 47.826 16.46 0.00 0.00 2.87
2262 4603 3.858238 GTCGACTTTTCCCGTATTCTCAG 59.142 47.826 8.70 0.00 0.00 3.35
2263 4604 2.603560 CGACTTTTCCCGTATTCTCAGC 59.396 50.000 0.00 0.00 0.00 4.26
2264 4605 3.596214 GACTTTTCCCGTATTCTCAGCA 58.404 45.455 0.00 0.00 0.00 4.41
2265 4606 4.000988 GACTTTTCCCGTATTCTCAGCAA 58.999 43.478 0.00 0.00 0.00 3.91
2268 4609 5.476945 ACTTTTCCCGTATTCTCAGCAATTT 59.523 36.000 0.00 0.00 0.00 1.82
2269 4610 5.560966 TTTCCCGTATTCTCAGCAATTTC 57.439 39.130 0.00 0.00 0.00 2.17
2270 4611 4.214986 TCCCGTATTCTCAGCAATTTCA 57.785 40.909 0.00 0.00 0.00 2.69
2272 4613 5.192927 TCCCGTATTCTCAGCAATTTCAAT 58.807 37.500 0.00 0.00 0.00 2.57
2273 4614 6.353323 TCCCGTATTCTCAGCAATTTCAATA 58.647 36.000 0.00 0.00 0.00 1.90
2276 4617 7.973388 CCCGTATTCTCAGCAATTTCAATAAAA 59.027 33.333 0.00 0.00 0.00 1.52
2282 4623 8.593945 TCTCAGCAATTTCAATAAAATACCCT 57.406 30.769 0.00 0.00 36.54 4.34
2283 4624 9.034800 TCTCAGCAATTTCAATAAAATACCCTT 57.965 29.630 0.00 0.00 36.54 3.95
2285 4626 9.434420 TCAGCAATTTCAATAAAATACCCTTTG 57.566 29.630 0.00 0.00 36.54 2.77
2286 4627 9.218440 CAGCAATTTCAATAAAATACCCTTTGT 57.782 29.630 0.00 0.00 36.54 2.83
2294 4635 9.451002 TCAATAAAATACCCTTTGTATTCGACA 57.549 29.630 0.00 0.00 46.96 4.35
2299 4640 7.435068 AATACCCTTTGTATTCGACATATGC 57.565 36.000 1.58 0.00 45.02 3.14
2303 5290 6.321181 ACCCTTTGTATTCGACATATGCAATT 59.679 34.615 1.58 0.00 38.07 2.32
2304 5291 6.638063 CCCTTTGTATTCGACATATGCAATTG 59.362 38.462 1.58 0.00 38.07 2.32
2392 5381 3.274288 AGTATTGACTGCTTAGGCTTGC 58.726 45.455 0.00 0.00 39.59 4.01
2617 5606 3.334054 GCTGGCCCTCCTGGAACT 61.334 66.667 0.00 0.00 35.39 3.01
3093 6082 2.752903 GGAAGGCCGCAGAAAGATTTTA 59.247 45.455 0.00 0.00 0.00 1.52
3692 6684 3.099141 GGATGCCATTGAGAGGGAAAAA 58.901 45.455 0.00 0.00 0.00 1.94
3862 6854 6.161381 TGGAGTTTTTCAAGGTATACTCGAC 58.839 40.000 2.25 0.00 34.34 4.20
3884 6876 6.701400 CGACTTTGTCCCTTTTGATGATTTTT 59.299 34.615 0.00 0.00 0.00 1.94
3995 7368 6.375377 CCAAAATTCACAATGCCAATTCAAG 58.625 36.000 0.00 0.00 0.00 3.02
3999 7372 3.992643 TCACAATGCCAATTCAAGGTTG 58.007 40.909 0.00 0.00 0.00 3.77
4091 7465 7.037438 GGATTTGGTAGTAATACAACGTCTCA 58.963 38.462 2.37 0.00 0.00 3.27
4098 7472 8.355169 GGTAGTAATACAACGTCTCATTATCCA 58.645 37.037 2.37 0.00 0.00 3.41
4170 7544 9.958180 TCAACTTCAGATGACCTATTTATTGAA 57.042 29.630 0.00 0.00 0.00 2.69
4173 7547 7.225538 ACTTCAGATGACCTATTTATTGAAGCG 59.774 37.037 9.95 0.00 42.29 4.68
4174 7548 6.816136 TCAGATGACCTATTTATTGAAGCGA 58.184 36.000 0.00 0.00 0.00 4.93
4175 7549 7.445121 TCAGATGACCTATTTATTGAAGCGAT 58.555 34.615 0.00 0.00 0.00 4.58
4176 7550 7.933577 TCAGATGACCTATTTATTGAAGCGATT 59.066 33.333 0.00 0.00 0.00 3.34
4177 7551 8.562892 CAGATGACCTATTTATTGAAGCGATTT 58.437 33.333 0.00 0.00 0.00 2.17
4178 7552 9.125026 AGATGACCTATTTATTGAAGCGATTTT 57.875 29.630 0.00 0.00 0.00 1.82
4179 7553 9.736023 GATGACCTATTTATTGAAGCGATTTTT 57.264 29.630 0.00 0.00 0.00 1.94
4260 7634 7.429636 AAATTACAATTATATGACCCCGTCG 57.570 36.000 0.00 0.00 34.95 5.12
4261 7635 3.396260 ACAATTATATGACCCCGTCGG 57.604 47.619 3.60 3.60 34.95 4.79
4262 7636 2.073816 CAATTATATGACCCCGTCGGC 58.926 52.381 5.50 0.00 34.95 5.54
4263 7637 0.611714 ATTATATGACCCCGTCGGCC 59.388 55.000 5.50 0.00 34.95 6.13
4264 7638 0.470456 TTATATGACCCCGTCGGCCT 60.470 55.000 5.50 0.00 34.95 5.19
4265 7639 0.470456 TATATGACCCCGTCGGCCTT 60.470 55.000 5.50 0.00 34.95 4.35
4266 7640 2.040009 ATATGACCCCGTCGGCCTTG 62.040 60.000 5.50 0.00 34.95 3.61
4270 7644 3.697747 CCCCGTCGGCCTTGTGTA 61.698 66.667 5.50 0.00 0.00 2.90
4271 7645 2.125673 CCCGTCGGCCTTGTGTAG 60.126 66.667 5.50 0.00 0.00 2.74
4280 7654 3.442996 CCTTGTGTAGGCCGAAGAG 57.557 57.895 0.00 0.00 37.17 2.85
4281 7655 0.108138 CCTTGTGTAGGCCGAAGAGG 60.108 60.000 0.00 0.00 44.97 3.69
4282 7656 0.608640 CTTGTGTAGGCCGAAGAGGT 59.391 55.000 0.00 0.00 43.70 3.85
4283 7657 1.822990 CTTGTGTAGGCCGAAGAGGTA 59.177 52.381 0.00 0.00 43.70 3.08
4284 7658 1.180029 TGTGTAGGCCGAAGAGGTAC 58.820 55.000 0.00 0.00 43.70 3.34
4297 7671 2.480100 AGGTACTCTTCGGTCTCGC 58.520 57.895 0.00 0.00 36.13 5.03
4298 7672 0.035247 AGGTACTCTTCGGTCTCGCT 60.035 55.000 0.00 0.00 36.13 4.93
4299 7673 0.810016 GGTACTCTTCGGTCTCGCTT 59.190 55.000 0.00 0.00 36.13 4.68
4300 7674 2.012673 GGTACTCTTCGGTCTCGCTTA 58.987 52.381 0.00 0.00 36.13 3.09
4301 7675 2.031930 GGTACTCTTCGGTCTCGCTTAG 59.968 54.545 0.00 0.00 36.13 2.18
4302 7676 1.096416 ACTCTTCGGTCTCGCTTAGG 58.904 55.000 0.00 0.00 36.13 2.69
4303 7677 0.248702 CTCTTCGGTCTCGCTTAGGC 60.249 60.000 0.00 0.00 36.13 3.93
4307 7681 2.890371 GGTCTCGCTTAGGCCGAA 59.110 61.111 0.00 0.00 41.09 4.30
4308 7682 1.227002 GGTCTCGCTTAGGCCGAAG 60.227 63.158 20.34 20.34 41.09 3.79
4309 7683 1.664321 GGTCTCGCTTAGGCCGAAGA 61.664 60.000 27.71 8.46 41.09 2.87
4310 7684 0.248702 GTCTCGCTTAGGCCGAAGAG 60.249 60.000 27.71 24.10 34.44 2.85
4311 7685 1.590259 CTCGCTTAGGCCGAAGAGC 60.590 63.158 27.71 18.73 34.44 4.09
4319 7693 3.787458 GCCGAAGAGCCTCTTTCG 58.213 61.111 8.66 12.69 36.73 3.46
4320 7694 1.215647 GCCGAAGAGCCTCTTTCGA 59.784 57.895 20.44 0.00 36.73 3.71
4321 7695 0.179097 GCCGAAGAGCCTCTTTCGAT 60.179 55.000 20.44 0.00 36.73 3.59
4322 7696 1.740718 GCCGAAGAGCCTCTTTCGATT 60.741 52.381 20.44 0.00 36.73 3.34
4323 7697 2.481449 GCCGAAGAGCCTCTTTCGATTA 60.481 50.000 20.44 0.00 36.73 1.75
4324 7698 3.800604 GCCGAAGAGCCTCTTTCGATTAT 60.801 47.826 20.44 0.00 36.73 1.28
4325 7699 3.984633 CCGAAGAGCCTCTTTCGATTATC 59.015 47.826 20.44 2.75 36.73 1.75
4326 7700 4.261825 CCGAAGAGCCTCTTTCGATTATCT 60.262 45.833 20.44 0.00 36.73 1.98
4327 7701 5.285651 CGAAGAGCCTCTTTCGATTATCTT 58.714 41.667 8.66 0.00 36.73 2.40
4328 7702 5.751028 CGAAGAGCCTCTTTCGATTATCTTT 59.249 40.000 8.66 0.00 36.73 2.52
4329 7703 6.292061 CGAAGAGCCTCTTTCGATTATCTTTG 60.292 42.308 8.66 0.00 36.73 2.77
4330 7704 5.363939 AGAGCCTCTTTCGATTATCTTTGG 58.636 41.667 0.00 0.00 0.00 3.28
4331 7705 4.455606 AGCCTCTTTCGATTATCTTTGGG 58.544 43.478 0.00 0.00 0.00 4.12
4332 7706 3.003793 GCCTCTTTCGATTATCTTTGGGC 59.996 47.826 0.00 0.00 0.00 5.36
4333 7707 3.565902 CCTCTTTCGATTATCTTTGGGCC 59.434 47.826 0.00 0.00 0.00 5.80
4334 7708 3.202906 TCTTTCGATTATCTTTGGGCCG 58.797 45.455 0.00 0.00 0.00 6.13
4335 7709 2.992124 TTCGATTATCTTTGGGCCGA 57.008 45.000 0.00 0.00 0.00 5.54
4336 7710 2.992124 TCGATTATCTTTGGGCCGAA 57.008 45.000 5.96 5.96 0.00 4.30
4337 7711 2.833794 TCGATTATCTTTGGGCCGAAG 58.166 47.619 25.18 25.18 0.00 3.79
4338 7712 2.432874 TCGATTATCTTTGGGCCGAAGA 59.567 45.455 33.00 33.00 38.13 2.87
4339 7713 2.544267 CGATTATCTTTGGGCCGAAGAC 59.456 50.000 33.46 21.22 36.79 3.01
4340 7714 2.018542 TTATCTTTGGGCCGAAGACG 57.981 50.000 33.46 11.31 36.79 4.18
4357 7731 3.379445 GGGACGACCTGAGCCGAA 61.379 66.667 3.44 0.00 35.85 4.30
4358 7732 2.182030 GGACGACCTGAGCCGAAG 59.818 66.667 0.00 0.00 0.00 3.79
4359 7733 2.341101 GGACGACCTGAGCCGAAGA 61.341 63.158 0.00 0.00 0.00 2.87
4360 7734 1.137825 GACGACCTGAGCCGAAGAG 59.862 63.158 0.00 0.00 0.00 2.85
4361 7735 2.202676 CGACCTGAGCCGAAGAGC 60.203 66.667 0.00 0.00 0.00 4.09
4362 7736 2.973899 GACCTGAGCCGAAGAGCA 59.026 61.111 0.00 0.00 34.23 4.26
4363 7737 1.153667 GACCTGAGCCGAAGAGCAG 60.154 63.158 0.00 0.00 34.23 4.24
4364 7738 1.882989 GACCTGAGCCGAAGAGCAGT 61.883 60.000 0.00 0.00 34.23 4.40
4365 7739 1.153667 CCTGAGCCGAAGAGCAGTC 60.154 63.158 0.00 0.00 34.23 3.51
4366 7740 1.603236 CCTGAGCCGAAGAGCAGTCT 61.603 60.000 0.00 0.00 34.23 3.24
4367 7741 0.246086 CTGAGCCGAAGAGCAGTCTT 59.754 55.000 0.00 0.00 46.32 3.01
4375 7749 1.230324 AAGAGCAGTCTTCGGTTTGC 58.770 50.000 0.00 0.00 38.84 3.68
4376 7750 0.106708 AGAGCAGTCTTCGGTTTGCA 59.893 50.000 0.00 0.00 38.97 4.08
4377 7751 0.514691 GAGCAGTCTTCGGTTTGCAG 59.485 55.000 0.00 0.00 38.97 4.41
4378 7752 0.179045 AGCAGTCTTCGGTTTGCAGT 60.179 50.000 0.00 0.00 38.97 4.40
4379 7753 0.040958 GCAGTCTTCGGTTTGCAGTG 60.041 55.000 0.00 0.00 36.59 3.66
4380 7754 0.588252 CAGTCTTCGGTTTGCAGTGG 59.412 55.000 0.00 0.00 0.00 4.00
4381 7755 0.535102 AGTCTTCGGTTTGCAGTGGG 60.535 55.000 0.00 0.00 0.00 4.61
4382 7756 1.896660 TCTTCGGTTTGCAGTGGGC 60.897 57.895 0.00 0.00 45.13 5.36
4383 7757 2.909965 TTCGGTTTGCAGTGGGCC 60.910 61.111 0.00 0.00 43.89 5.80
4386 7760 2.909965 GGTTTGCAGTGGGCCGAA 60.910 61.111 0.00 0.00 43.89 4.30
4387 7761 2.494530 GGTTTGCAGTGGGCCGAAA 61.495 57.895 0.00 0.00 43.89 3.46
4388 7762 1.439644 GTTTGCAGTGGGCCGAAAA 59.560 52.632 0.00 0.00 43.89 2.29
4389 7763 0.597377 GTTTGCAGTGGGCCGAAAAG 60.597 55.000 0.00 0.00 43.89 2.27
4390 7764 0.753479 TTTGCAGTGGGCCGAAAAGA 60.753 50.000 0.00 0.00 43.89 2.52
4391 7765 1.172180 TTGCAGTGGGCCGAAAAGAG 61.172 55.000 0.00 0.00 43.89 2.85
4392 7766 2.335712 GCAGTGGGCCGAAAAGAGG 61.336 63.158 0.00 0.00 36.11 3.69
4393 7767 1.073199 CAGTGGGCCGAAAAGAGGT 59.927 57.895 0.00 0.00 0.00 3.85
4394 7768 0.955919 CAGTGGGCCGAAAAGAGGTC 60.956 60.000 0.00 0.00 0.00 3.85
4395 7769 1.128188 AGTGGGCCGAAAAGAGGTCT 61.128 55.000 0.00 0.00 33.04 3.85
4396 7770 0.250770 GTGGGCCGAAAAGAGGTCTT 60.251 55.000 0.00 0.00 37.91 3.01
4397 7771 0.036306 TGGGCCGAAAAGAGGTCTTC 59.964 55.000 0.00 0.00 34.61 2.87
4398 7772 1.019805 GGGCCGAAAAGAGGTCTTCG 61.020 60.000 0.00 0.00 43.12 3.79
4402 7776 2.726832 CGAAAAGAGGTCTTCGGACT 57.273 50.000 0.00 0.00 43.94 3.85
4403 7777 2.597520 CGAAAAGAGGTCTTCGGACTC 58.402 52.381 0.00 0.00 43.94 3.36
4404 7778 2.671632 CGAAAAGAGGTCTTCGGACTCC 60.672 54.545 0.00 0.00 43.94 3.85
4405 7779 2.312424 AAAGAGGTCTTCGGACTCCT 57.688 50.000 0.00 0.00 43.94 3.69
4406 7780 1.551452 AAGAGGTCTTCGGACTCCTG 58.449 55.000 0.00 0.00 43.94 3.86
4407 7781 0.699399 AGAGGTCTTCGGACTCCTGA 59.301 55.000 0.00 0.00 43.94 3.86
4408 7782 1.075698 AGAGGTCTTCGGACTCCTGAA 59.924 52.381 0.00 0.00 43.94 3.02
4411 7785 4.921834 CTTCGGACTCCTGAAGGC 57.078 61.111 16.11 0.00 46.90 4.35
4415 7789 3.388841 GGACTCCTGAAGGCCGAA 58.611 61.111 0.00 0.00 45.69 4.30
4416 7790 1.219393 GGACTCCTGAAGGCCGAAG 59.781 63.158 0.00 0.00 45.69 3.79
4417 7791 1.258445 GGACTCCTGAAGGCCGAAGA 61.258 60.000 0.00 0.00 45.69 2.87
4418 7792 0.174617 GACTCCTGAAGGCCGAAGAG 59.825 60.000 0.00 3.34 34.44 2.85
4419 7793 0.543174 ACTCCTGAAGGCCGAAGAGT 60.543 55.000 10.07 10.07 34.44 3.24
4420 7794 0.108424 CTCCTGAAGGCCGAAGAGTG 60.108 60.000 0.00 0.00 34.44 3.51
4421 7795 1.743252 CCTGAAGGCCGAAGAGTGC 60.743 63.158 0.00 0.00 0.00 4.40
4422 7796 2.048222 TGAAGGCCGAAGAGTGCG 60.048 61.111 0.00 0.00 0.00 5.34
4423 7797 2.048127 GAAGGCCGAAGAGTGCGT 60.048 61.111 0.00 0.00 0.00 5.24
4424 7798 2.357517 AAGGCCGAAGAGTGCGTG 60.358 61.111 0.00 0.00 0.00 5.34
4428 7802 2.811317 CCGAAGAGTGCGTGCCTC 60.811 66.667 3.14 3.14 0.00 4.70
4429 7803 3.175240 CGAAGAGTGCGTGCCTCG 61.175 66.667 5.19 0.00 43.12 4.63
4430 7804 2.049063 GAAGAGTGCGTGCCTCGT 60.049 61.111 5.19 2.78 42.13 4.18
4431 7805 1.664965 GAAGAGTGCGTGCCTCGTT 60.665 57.895 5.19 1.97 42.13 3.85
4432 7806 1.891060 GAAGAGTGCGTGCCTCGTTG 61.891 60.000 5.19 0.00 42.13 4.10
4433 7807 4.077188 GAGTGCGTGCCTCGTTGC 62.077 66.667 0.83 0.00 42.13 4.17
4434 7808 4.908687 AGTGCGTGCCTCGTTGCA 62.909 61.111 0.00 0.00 42.13 4.08
4435 7809 4.374702 GTGCGTGCCTCGTTGCAG 62.375 66.667 1.94 0.00 43.02 4.41
4438 7812 4.081030 CGTGCCTCGTTGCAGCTG 62.081 66.667 10.11 10.11 43.02 4.24
4439 7813 4.395583 GTGCCTCGTTGCAGCTGC 62.396 66.667 31.89 31.89 43.02 5.25
4449 7823 2.267006 GCAGCTGCACTCTGGCTA 59.733 61.111 33.36 0.00 41.59 3.93
4450 7824 1.814586 GCAGCTGCACTCTGGCTAG 60.815 63.158 33.36 0.00 41.59 3.42
4451 7825 1.814586 CAGCTGCACTCTGGCTAGC 60.815 63.158 6.04 6.04 37.84 3.42
4452 7826 1.988956 AGCTGCACTCTGGCTAGCT 60.989 57.895 15.72 0.00 40.73 3.32
4453 7827 1.814586 GCTGCACTCTGGCTAGCTG 60.815 63.158 15.72 5.56 36.04 4.24
4454 7828 1.153409 CTGCACTCTGGCTAGCTGG 60.153 63.158 15.72 7.87 34.04 4.85
4455 7829 2.513435 GCACTCTGGCTAGCTGGC 60.513 66.667 14.65 14.65 42.18 4.85
4456 7830 3.028921 GCACTCTGGCTAGCTGGCT 62.029 63.158 22.23 0.00 42.34 4.75
4457 7831 1.601171 CACTCTGGCTAGCTGGCTT 59.399 57.895 22.23 0.00 42.34 4.35
4458 7832 0.743701 CACTCTGGCTAGCTGGCTTG 60.744 60.000 22.23 14.30 42.34 4.01
4459 7833 1.818785 CTCTGGCTAGCTGGCTTGC 60.819 63.158 22.23 17.78 42.46 4.01
4460 7834 2.254737 CTCTGGCTAGCTGGCTTGCT 62.255 60.000 22.23 10.08 46.11 3.91
4461 7835 2.045634 TGGCTAGCTGGCTTGCTG 60.046 61.111 22.23 6.88 43.87 4.41
4462 7836 3.516212 GGCTAGCTGGCTTGCTGC 61.516 66.667 22.23 13.92 43.87 5.25
4485 7859 2.654877 GCATGCAGCAGCCTTTGT 59.345 55.556 14.21 0.00 44.79 2.83
4486 7860 1.885157 GCATGCAGCAGCCTTTGTA 59.115 52.632 14.21 0.00 44.79 2.41
4487 7861 0.244450 GCATGCAGCAGCCTTTGTAA 59.756 50.000 14.21 0.00 44.79 2.41
4488 7862 1.986698 CATGCAGCAGCCTTTGTAAC 58.013 50.000 0.00 0.00 41.13 2.50
4489 7863 0.523072 ATGCAGCAGCCTTTGTAACG 59.477 50.000 0.00 0.00 41.13 3.18
4490 7864 0.817634 TGCAGCAGCCTTTGTAACGT 60.818 50.000 0.00 0.00 41.13 3.99
4491 7865 0.385974 GCAGCAGCCTTTGTAACGTG 60.386 55.000 0.00 0.00 33.58 4.49
4492 7866 1.225855 CAGCAGCCTTTGTAACGTGA 58.774 50.000 0.00 0.00 0.00 4.35
4493 7867 1.806542 CAGCAGCCTTTGTAACGTGAT 59.193 47.619 0.00 0.00 0.00 3.06
4494 7868 2.226437 CAGCAGCCTTTGTAACGTGATT 59.774 45.455 0.00 0.00 0.00 2.57
4495 7869 3.435327 CAGCAGCCTTTGTAACGTGATTA 59.565 43.478 0.00 0.00 0.00 1.75
4496 7870 3.684788 AGCAGCCTTTGTAACGTGATTAG 59.315 43.478 0.00 0.00 0.00 1.73
4497 7871 3.435671 GCAGCCTTTGTAACGTGATTAGT 59.564 43.478 0.00 0.00 0.00 2.24
4498 7872 4.435651 GCAGCCTTTGTAACGTGATTAGTC 60.436 45.833 0.00 0.00 0.00 2.59
4499 7873 4.092968 CAGCCTTTGTAACGTGATTAGTCC 59.907 45.833 0.00 0.00 0.00 3.85
4500 7874 3.998341 GCCTTTGTAACGTGATTAGTCCA 59.002 43.478 0.00 0.00 0.00 4.02
4501 7875 4.453136 GCCTTTGTAACGTGATTAGTCCAA 59.547 41.667 0.00 0.00 0.00 3.53
4502 7876 5.616204 GCCTTTGTAACGTGATTAGTCCAAC 60.616 44.000 0.00 0.00 0.00 3.77
4503 7877 5.106830 CCTTTGTAACGTGATTAGTCCAACC 60.107 44.000 0.00 0.00 0.00 3.77
4504 7878 3.577667 TGTAACGTGATTAGTCCAACCG 58.422 45.455 0.00 0.00 0.00 4.44
4505 7879 3.255395 TGTAACGTGATTAGTCCAACCGA 59.745 43.478 0.00 0.00 0.00 4.69
4506 7880 3.389925 AACGTGATTAGTCCAACCGAA 57.610 42.857 0.00 0.00 0.00 4.30
4507 7881 2.955614 ACGTGATTAGTCCAACCGAAG 58.044 47.619 0.00 0.00 0.00 3.79
4533 7907 6.444633 CCCACATTAGCTGAATTGATTGATC 58.555 40.000 0.00 0.00 0.00 2.92
4573 9309 7.500720 TGTGCTATACGTGTATGTACATACT 57.499 36.000 34.51 22.78 43.04 2.12
4576 9312 8.071967 GTGCTATACGTGTATGTACATACTCAA 58.928 37.037 34.51 24.90 43.04 3.02
4582 9318 4.809426 GTGTATGTACATACTCAACAGGCC 59.191 45.833 34.51 14.15 43.04 5.19
4617 9355 4.164221 TCCCTCTCATGAAATACACTTCCC 59.836 45.833 0.00 0.00 0.00 3.97
4619 9357 5.500234 CCTCTCATGAAATACACTTCCCAA 58.500 41.667 0.00 0.00 0.00 4.12
4702 9441 5.602458 TGTAACACAGACTACTACTGTCG 57.398 43.478 0.00 0.00 45.15 4.35
4703 9442 5.299949 TGTAACACAGACTACTACTGTCGA 58.700 41.667 0.00 0.00 45.15 4.20
4704 9443 4.745837 AACACAGACTACTACTGTCGAC 57.254 45.455 9.11 9.11 45.15 4.20
4705 9444 3.072944 ACACAGACTACTACTGTCGACC 58.927 50.000 14.12 0.00 45.15 4.79
4726 9465 2.724403 GCACTTGCACGTAATTGGC 58.276 52.632 0.00 0.00 41.59 4.52
4736 9475 3.122780 GCACGTAATTGGCAAAACAATCC 59.877 43.478 3.01 0.00 40.01 3.01
4748 9487 4.215399 GCAAAACAATCCTGCACTAGTACA 59.785 41.667 0.00 0.00 36.09 2.90
4760 9499 7.041576 TCCTGCACTAGTACAAGTATACGTATG 60.042 40.741 18.37 5.34 0.00 2.39
4762 9501 7.412063 TGCACTAGTACAAGTATACGTATGTG 58.588 38.462 18.37 14.51 0.00 3.21
4791 9531 3.063180 GCACATGCAGAGCACTAAACTAG 59.937 47.826 0.00 0.00 43.04 2.57
4802 9542 8.274939 CAGAGCACTAAACTAGTATACGTAGAC 58.725 40.741 12.37 12.37 37.23 2.59
4806 9546 7.850003 GCACTAAACTAGTATACGTAGACAGTG 59.150 40.741 22.12 22.12 37.23 3.66
4814 9554 2.257974 ACGTAGACAGTGCATGTACG 57.742 50.000 12.38 12.38 45.29 3.67
4823 9563 2.784596 GCATGTACGTGCGCATGT 59.215 55.556 35.14 35.14 43.04 3.21
4827 9567 0.108567 ATGTACGTGCGCATGTGGTA 60.109 50.000 38.55 25.90 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.595238 ACTAAGACACTCGAAGGTGGT 58.405 47.619 9.35 0.00 41.09 4.16
22 23 6.387465 CCATCTTGTTACTAAGACACTCGAA 58.613 40.000 0.00 0.00 39.33 3.71
23 24 5.621555 GCCATCTTGTTACTAAGACACTCGA 60.622 44.000 0.00 0.00 39.33 4.04
25 26 4.870991 GGCCATCTTGTTACTAAGACACTC 59.129 45.833 0.00 0.00 39.33 3.51
28 29 3.585289 TGGGCCATCTTGTTACTAAGACA 59.415 43.478 0.00 0.00 39.33 3.41
46 47 1.485480 GTCCTAGGTCCTTAAGTGGGC 59.515 57.143 9.08 0.00 0.00 5.36
103 104 7.391833 ACAGAAAATAGAAAACCAGGCTAGAAG 59.608 37.037 0.00 0.00 0.00 2.85
107 108 6.303839 ACACAGAAAATAGAAAACCAGGCTA 58.696 36.000 0.00 0.00 0.00 3.93
108 109 5.140454 ACACAGAAAATAGAAAACCAGGCT 58.860 37.500 0.00 0.00 0.00 4.58
207 209 7.553881 TTTTTGCGGAAAATGGTTCATAAAA 57.446 28.000 15.83 0.00 32.44 1.52
231 233 6.200665 CACGGTTTTCACAAAATGTTCATGAT 59.799 34.615 0.00 0.00 32.22 2.45
339 342 3.194005 AGAAGCGTTCCTGAGTTTGAA 57.806 42.857 0.00 0.00 0.00 2.69
403 406 7.943413 TCAAAATTTTGAGAAATGATCGCAA 57.057 28.000 26.01 2.76 44.67 4.85
404 407 7.652909 AGTTCAAAATTTTGAGAAATGATCGCA 59.347 29.630 27.52 10.60 46.68 5.10
405 408 8.011067 AGTTCAAAATTTTGAGAAATGATCGC 57.989 30.769 27.52 12.35 46.68 4.58
409 412 9.889128 AGGAAAGTTCAAAATTTTGAGAAATGA 57.111 25.926 27.52 13.57 46.68 2.57
587 641 0.384353 GCCACGTTCGCTTCTGTTTC 60.384 55.000 0.00 0.00 0.00 2.78
626 683 2.014068 GCTCATTAGCCCGCTGAAGTT 61.014 52.381 0.00 0.00 43.40 2.66
726 786 0.178876 TGTGGATCCAGGGTTCCAGA 60.179 55.000 16.81 13.42 42.57 3.86
823 2903 2.420129 GGACCATAGCCGAACAGATTGT 60.420 50.000 0.00 0.00 0.00 2.71
888 2968 1.265454 TTCCTCCCGGAAGAAGAGGC 61.265 60.000 16.53 0.00 44.28 4.70
1107 3187 3.046087 CCGCCGCAGCATCCATAG 61.046 66.667 0.00 0.00 39.83 2.23
1234 3314 3.056328 GCTCTTGGGTTGGTCCGC 61.056 66.667 0.00 0.00 37.00 5.54
1443 3523 1.381076 CTCCTGGGCCGGGTTTTTA 59.619 57.895 30.37 10.50 0.00 1.52
1578 3658 2.793160 TACCGGTCTCGTGCTCGTCT 62.793 60.000 12.40 0.00 38.33 4.18
1956 4036 4.202295 ACTGGTCTGCATATCATCGACATT 60.202 41.667 0.00 0.00 0.00 2.71
2115 4210 8.462016 CGACCTGGATTTCTTAAAATGAGAATT 58.538 33.333 0.00 0.00 35.21 2.17
2121 4216 6.546395 CAGTCGACCTGGATTTCTTAAAATG 58.454 40.000 13.01 0.00 37.54 2.32
2152 4247 5.747951 TGTATTCGACATATGCAATTGCA 57.252 34.783 33.57 33.57 44.24 4.08
2210 4305 9.941325 TGGCATTCTATTGAAATTACAAACAAT 57.059 25.926 0.00 0.00 35.63 2.71
2214 4309 8.034215 CCTGTGGCATTCTATTGAAATTACAAA 58.966 33.333 0.00 0.00 35.63 2.83
2215 4310 7.178274 ACCTGTGGCATTCTATTGAAATTACAA 59.822 33.333 0.00 0.00 35.63 2.41
2216 4311 6.663093 ACCTGTGGCATTCTATTGAAATTACA 59.337 34.615 0.00 0.00 35.63 2.41
2217 4312 7.100458 ACCTGTGGCATTCTATTGAAATTAC 57.900 36.000 0.00 0.00 35.63 1.89
2218 4313 6.038161 CGACCTGTGGCATTCTATTGAAATTA 59.962 38.462 0.00 0.00 35.63 1.40
2219 4314 5.163622 CGACCTGTGGCATTCTATTGAAATT 60.164 40.000 0.00 0.00 35.63 1.82
2220 4315 4.336433 CGACCTGTGGCATTCTATTGAAAT 59.664 41.667 0.00 0.00 35.63 2.17
2221 4316 3.689161 CGACCTGTGGCATTCTATTGAAA 59.311 43.478 0.00 0.00 35.63 2.69
2223 4318 2.499693 TCGACCTGTGGCATTCTATTGA 59.500 45.455 0.00 0.00 0.00 2.57
2224 4319 2.609459 GTCGACCTGTGGCATTCTATTG 59.391 50.000 3.51 0.00 0.00 1.90
2225 4320 2.501723 AGTCGACCTGTGGCATTCTATT 59.498 45.455 13.01 0.00 0.00 1.73
2226 4321 2.111384 AGTCGACCTGTGGCATTCTAT 58.889 47.619 13.01 0.00 0.00 1.98
2227 4322 1.557099 AGTCGACCTGTGGCATTCTA 58.443 50.000 13.01 0.00 0.00 2.10
2229 4324 1.523758 AAAGTCGACCTGTGGCATTC 58.476 50.000 13.01 0.00 0.00 2.67
2230 4325 1.880027 GAAAAGTCGACCTGTGGCATT 59.120 47.619 13.01 0.00 0.00 3.56
2231 4326 1.523758 GAAAAGTCGACCTGTGGCAT 58.476 50.000 13.01 0.00 0.00 4.40
2232 4327 0.534203 GGAAAAGTCGACCTGTGGCA 60.534 55.000 13.01 0.00 0.00 4.92
2233 4328 1.235281 GGGAAAAGTCGACCTGTGGC 61.235 60.000 13.01 0.00 0.00 5.01
2234 4329 0.949105 CGGGAAAAGTCGACCTGTGG 60.949 60.000 13.01 0.00 0.00 4.17
2235 4330 0.249741 ACGGGAAAAGTCGACCTGTG 60.250 55.000 13.01 0.00 41.09 3.66
2237 4332 2.667473 ATACGGGAAAAGTCGACCTG 57.333 50.000 13.01 3.91 36.28 4.00
2239 4334 3.185330 GAGAATACGGGAAAAGTCGACC 58.815 50.000 13.01 0.00 0.00 4.79
2240 4335 3.841643 TGAGAATACGGGAAAAGTCGAC 58.158 45.455 7.70 7.70 0.00 4.20
2243 4584 3.596214 TGCTGAGAATACGGGAAAAGTC 58.404 45.455 0.00 0.00 0.00 3.01
2245 4586 5.567138 AATTGCTGAGAATACGGGAAAAG 57.433 39.130 0.00 0.00 31.01 2.27
2251 4592 8.909708 TTTTATTGAAATTGCTGAGAATACGG 57.090 30.769 0.00 0.00 0.00 4.02
2258 4599 9.657419 AAAGGGTATTTTATTGAAATTGCTGAG 57.343 29.630 0.00 0.00 38.80 3.35
2260 4601 9.218440 ACAAAGGGTATTTTATTGAAATTGCTG 57.782 29.630 0.00 0.00 38.80 4.41
2276 4617 6.530120 TGCATATGTCGAATACAAAGGGTAT 58.470 36.000 4.29 0.00 44.62 2.73
2298 4639 7.387673 AGTTTTTACCCTCTATTTTGCAATTGC 59.612 33.333 23.69 23.69 42.50 3.56
2299 4640 8.711457 CAGTTTTTACCCTCTATTTTGCAATTG 58.289 33.333 0.00 0.00 0.00 2.32
2303 5290 6.071984 TCCAGTTTTTACCCTCTATTTTGCA 58.928 36.000 0.00 0.00 0.00 4.08
2304 5291 6.584185 TCCAGTTTTTACCCTCTATTTTGC 57.416 37.500 0.00 0.00 0.00 3.68
2617 5606 0.753479 TCGCCAGCAAAGTTTTCCCA 60.753 50.000 0.00 0.00 0.00 4.37
3093 6082 4.759183 GGAACTTTTCTGAGATGAACAGCT 59.241 41.667 0.00 0.00 35.61 4.24
3283 6272 9.736023 GATACTTTAAGCATAAGGAACCAATTG 57.264 33.333 0.00 0.00 0.00 2.32
3284 6273 9.474313 TGATACTTTAAGCATAAGGAACCAATT 57.526 29.630 0.00 0.00 0.00 2.32
3416 6406 4.359706 GCAGTTTACAAAGGAACCACAAG 58.640 43.478 0.00 0.00 0.00 3.16
3692 6684 5.725551 TTTGTCTACCATTGACCCCATAT 57.274 39.130 0.00 0.00 33.83 1.78
3930 7303 7.921786 ATCGTTTCAATTAGAAGGTCATCAA 57.078 32.000 0.00 0.00 37.57 2.57
3995 7368 4.119136 CAGGACACCAAAATGAAACAACC 58.881 43.478 0.00 0.00 0.00 3.77
3999 7372 3.383761 CAGCAGGACACCAAAATGAAAC 58.616 45.455 0.00 0.00 0.00 2.78
4104 7478 0.901580 AACAGCTTCCATGGCCCTTG 60.902 55.000 6.96 5.76 0.00 3.61
4111 7485 7.697691 AGATAAACGAAATAACAGCTTCCATG 58.302 34.615 0.00 0.00 0.00 3.66
4234 7608 9.158233 CGACGGGGTCATATAATTGTAATTTAT 57.842 33.333 0.00 0.00 32.09 1.40
4235 7609 7.603404 CCGACGGGGTCATATAATTGTAATTTA 59.397 37.037 5.81 0.00 32.09 1.40
4236 7610 6.428771 CCGACGGGGTCATATAATTGTAATTT 59.571 38.462 5.81 0.00 32.09 1.82
4237 7611 5.935789 CCGACGGGGTCATATAATTGTAATT 59.064 40.000 5.81 0.00 32.09 1.40
4238 7612 5.484715 CCGACGGGGTCATATAATTGTAAT 58.515 41.667 5.81 0.00 32.09 1.89
4239 7613 4.800249 GCCGACGGGGTCATATAATTGTAA 60.800 45.833 17.22 0.00 38.44 2.41
4240 7614 3.306225 GCCGACGGGGTCATATAATTGTA 60.306 47.826 17.22 0.00 38.44 2.41
4241 7615 2.549349 GCCGACGGGGTCATATAATTGT 60.549 50.000 17.22 0.00 38.44 2.71
4242 7616 2.073816 GCCGACGGGGTCATATAATTG 58.926 52.381 17.22 0.00 38.44 2.32
4243 7617 1.002773 GGCCGACGGGGTCATATAATT 59.997 52.381 17.22 0.00 41.38 1.40
4244 7618 0.611714 GGCCGACGGGGTCATATAAT 59.388 55.000 17.22 0.00 41.38 1.28
4245 7619 0.470456 AGGCCGACGGGGTCATATAA 60.470 55.000 17.22 0.00 45.54 0.98
4246 7620 0.470456 AAGGCCGACGGGGTCATATA 60.470 55.000 17.22 0.00 45.54 0.86
4247 7621 1.764854 AAGGCCGACGGGGTCATAT 60.765 57.895 17.22 0.00 45.54 1.78
4248 7622 2.364579 AAGGCCGACGGGGTCATA 60.365 61.111 17.22 0.00 45.54 2.15
4249 7623 4.096003 CAAGGCCGACGGGGTCAT 62.096 66.667 17.22 0.00 45.54 3.06
4253 7627 3.659089 CTACACAAGGCCGACGGGG 62.659 68.421 17.22 0.00 39.58 5.73
4254 7628 2.125673 CTACACAAGGCCGACGGG 60.126 66.667 17.22 0.56 0.00 5.28
4255 7629 2.125673 CCTACACAAGGCCGACGG 60.126 66.667 10.29 10.29 38.97 4.79
4263 7637 0.608640 ACCTCTTCGGCCTACACAAG 59.391 55.000 0.00 0.00 35.61 3.16
4264 7638 1.547372 GTACCTCTTCGGCCTACACAA 59.453 52.381 0.00 0.00 35.61 3.33
4265 7639 1.180029 GTACCTCTTCGGCCTACACA 58.820 55.000 0.00 0.00 35.61 3.72
4266 7640 1.404748 GAGTACCTCTTCGGCCTACAC 59.595 57.143 0.00 0.00 35.61 2.90
4267 7641 1.284198 AGAGTACCTCTTCGGCCTACA 59.716 52.381 0.00 0.00 37.60 2.74
4268 7642 2.055684 AGAGTACCTCTTCGGCCTAC 57.944 55.000 0.00 0.00 37.60 3.18
4269 7643 2.822707 AAGAGTACCTCTTCGGCCTA 57.177 50.000 0.00 0.00 46.42 3.93
4270 7644 3.693810 AAGAGTACCTCTTCGGCCT 57.306 52.632 0.00 0.00 46.42 5.19
4277 7651 2.013058 GCGAGACCGAAGAGTACCTCT 61.013 57.143 0.00 0.00 38.19 3.69
4278 7652 0.377905 GCGAGACCGAAGAGTACCTC 59.622 60.000 0.00 0.00 38.22 3.85
4279 7653 0.035247 AGCGAGACCGAAGAGTACCT 60.035 55.000 0.00 0.00 38.22 3.08
4280 7654 0.810016 AAGCGAGACCGAAGAGTACC 59.190 55.000 0.00 0.00 38.22 3.34
4281 7655 2.031930 CCTAAGCGAGACCGAAGAGTAC 59.968 54.545 0.00 0.00 38.22 2.73
4282 7656 2.286872 CCTAAGCGAGACCGAAGAGTA 58.713 52.381 0.00 0.00 38.22 2.59
4283 7657 1.096416 CCTAAGCGAGACCGAAGAGT 58.904 55.000 0.00 0.00 38.22 3.24
4284 7658 0.248702 GCCTAAGCGAGACCGAAGAG 60.249 60.000 0.00 0.00 38.22 2.85
4285 7659 1.664321 GGCCTAAGCGAGACCGAAGA 61.664 60.000 0.00 0.00 41.24 2.87
4286 7660 1.227002 GGCCTAAGCGAGACCGAAG 60.227 63.158 0.00 0.00 41.24 3.79
4287 7661 2.890371 GGCCTAAGCGAGACCGAA 59.110 61.111 0.00 0.00 41.24 4.30
4288 7662 3.515286 CGGCCTAAGCGAGACCGA 61.515 66.667 10.21 0.00 46.71 4.69
4289 7663 2.938539 CTTCGGCCTAAGCGAGACCG 62.939 65.000 3.76 9.60 45.15 4.79
4290 7664 1.227002 CTTCGGCCTAAGCGAGACC 60.227 63.158 3.76 0.00 41.24 3.85
4291 7665 0.248702 CTCTTCGGCCTAAGCGAGAC 60.249 60.000 12.14 0.00 41.24 3.36
4292 7666 2.005960 GCTCTTCGGCCTAAGCGAGA 62.006 60.000 12.14 0.00 41.24 4.04
4293 7667 1.590259 GCTCTTCGGCCTAAGCGAG 60.590 63.158 12.14 6.98 41.24 5.03
4294 7668 2.494918 GCTCTTCGGCCTAAGCGA 59.505 61.111 12.14 0.00 41.24 4.93
4302 7676 1.215647 TCGAAAGAGGCTCTTCGGC 59.784 57.895 30.37 22.26 35.27 5.54
4314 7688 3.202906 TCGGCCCAAAGATAATCGAAAG 58.797 45.455 0.00 0.00 0.00 2.62
4315 7689 3.269538 TCGGCCCAAAGATAATCGAAA 57.730 42.857 0.00 0.00 0.00 3.46
4316 7690 2.992124 TCGGCCCAAAGATAATCGAA 57.008 45.000 0.00 0.00 0.00 3.71
4317 7691 2.432874 TCTTCGGCCCAAAGATAATCGA 59.567 45.455 10.46 0.00 0.00 3.59
4318 7692 2.544267 GTCTTCGGCCCAAAGATAATCG 59.456 50.000 16.10 0.00 35.35 3.34
4319 7693 2.544267 CGTCTTCGGCCCAAAGATAATC 59.456 50.000 16.10 5.12 35.35 1.75
4320 7694 2.561569 CGTCTTCGGCCCAAAGATAAT 58.438 47.619 16.10 0.00 35.35 1.28
4321 7695 2.018542 CGTCTTCGGCCCAAAGATAA 57.981 50.000 16.10 0.00 35.35 1.75
4322 7696 3.752796 CGTCTTCGGCCCAAAGATA 57.247 52.632 16.10 0.00 35.35 1.98
4323 7697 4.617875 CGTCTTCGGCCCAAAGAT 57.382 55.556 16.10 0.00 35.35 2.40
4333 7707 2.178521 CAGGTCGTCCCGTCTTCG 59.821 66.667 0.00 0.00 38.74 3.79
4334 7708 1.507174 CTCAGGTCGTCCCGTCTTC 59.493 63.158 0.00 0.00 38.74 2.87
4335 7709 2.637383 GCTCAGGTCGTCCCGTCTT 61.637 63.158 0.00 0.00 38.74 3.01
4336 7710 3.063084 GCTCAGGTCGTCCCGTCT 61.063 66.667 0.00 0.00 38.74 4.18
4337 7711 4.131088 GGCTCAGGTCGTCCCGTC 62.131 72.222 0.00 0.00 38.74 4.79
4340 7714 3.358076 CTTCGGCTCAGGTCGTCCC 62.358 68.421 0.00 0.00 41.76 4.46
4341 7715 2.182030 CTTCGGCTCAGGTCGTCC 59.818 66.667 0.00 0.00 41.76 4.79
4342 7716 1.137825 CTCTTCGGCTCAGGTCGTC 59.862 63.158 0.00 0.00 41.76 4.20
4343 7717 2.995872 GCTCTTCGGCTCAGGTCGT 61.996 63.158 0.00 0.00 41.76 4.34
4344 7718 2.202676 GCTCTTCGGCTCAGGTCG 60.203 66.667 0.00 0.00 42.51 4.79
4345 7719 1.153667 CTGCTCTTCGGCTCAGGTC 60.154 63.158 0.00 0.00 0.00 3.85
4346 7720 1.882989 GACTGCTCTTCGGCTCAGGT 61.883 60.000 0.00 0.00 0.00 4.00
4347 7721 1.153667 GACTGCTCTTCGGCTCAGG 60.154 63.158 0.00 0.00 0.00 3.86
4348 7722 0.246086 AAGACTGCTCTTCGGCTCAG 59.754 55.000 0.00 0.00 30.11 3.35
4349 7723 0.244994 GAAGACTGCTCTTCGGCTCA 59.755 55.000 0.42 0.00 42.40 4.26
4350 7724 3.043340 GAAGACTGCTCTTCGGCTC 57.957 57.895 0.42 0.00 42.40 4.70
4355 7729 1.195674 GCAAACCGAAGACTGCTCTTC 59.804 52.381 5.78 5.78 46.42 2.87
4356 7730 1.230324 GCAAACCGAAGACTGCTCTT 58.770 50.000 0.00 0.00 39.64 2.85
4357 7731 0.106708 TGCAAACCGAAGACTGCTCT 59.893 50.000 0.00 0.00 35.78 4.09
4358 7732 0.514691 CTGCAAACCGAAGACTGCTC 59.485 55.000 0.00 0.00 35.78 4.26
4359 7733 0.179045 ACTGCAAACCGAAGACTGCT 60.179 50.000 0.00 0.00 35.78 4.24
4360 7734 0.040958 CACTGCAAACCGAAGACTGC 60.041 55.000 0.00 0.00 35.32 4.40
4361 7735 0.588252 CCACTGCAAACCGAAGACTG 59.412 55.000 0.00 0.00 0.00 3.51
4362 7736 0.535102 CCCACTGCAAACCGAAGACT 60.535 55.000 0.00 0.00 0.00 3.24
4363 7737 1.949257 CCCACTGCAAACCGAAGAC 59.051 57.895 0.00 0.00 0.00 3.01
4364 7738 1.896660 GCCCACTGCAAACCGAAGA 60.897 57.895 0.00 0.00 40.77 2.87
4365 7739 2.644992 GCCCACTGCAAACCGAAG 59.355 61.111 0.00 0.00 40.77 3.79
4366 7740 2.909965 GGCCCACTGCAAACCGAA 60.910 61.111 0.00 0.00 43.89 4.30
4369 7743 2.022240 TTTTCGGCCCACTGCAAACC 62.022 55.000 0.00 0.00 43.89 3.27
4370 7744 0.597377 CTTTTCGGCCCACTGCAAAC 60.597 55.000 0.00 0.00 43.89 2.93
4371 7745 0.753479 TCTTTTCGGCCCACTGCAAA 60.753 50.000 0.00 0.00 43.89 3.68
4372 7746 1.152860 TCTTTTCGGCCCACTGCAA 60.153 52.632 0.00 0.00 43.89 4.08
4373 7747 1.600636 CTCTTTTCGGCCCACTGCA 60.601 57.895 0.00 0.00 43.89 4.41
4374 7748 2.335712 CCTCTTTTCGGCCCACTGC 61.336 63.158 0.00 0.00 40.16 4.40
4375 7749 0.955919 GACCTCTTTTCGGCCCACTG 60.956 60.000 0.00 0.00 0.00 3.66
4376 7750 1.128188 AGACCTCTTTTCGGCCCACT 61.128 55.000 0.00 0.00 0.00 4.00
4377 7751 0.250770 AAGACCTCTTTTCGGCCCAC 60.251 55.000 0.00 0.00 30.82 4.61
4378 7752 0.036306 GAAGACCTCTTTTCGGCCCA 59.964 55.000 0.00 0.00 36.11 5.36
4379 7753 1.019805 CGAAGACCTCTTTTCGGCCC 61.020 60.000 0.00 0.00 41.69 5.80
4380 7754 2.457080 CGAAGACCTCTTTTCGGCC 58.543 57.895 0.00 0.00 41.69 6.13
4383 7757 2.597520 GAGTCCGAAGACCTCTTTTCG 58.402 52.381 0.04 0.04 44.72 3.46
4384 7758 2.563620 AGGAGTCCGAAGACCTCTTTTC 59.436 50.000 2.76 0.00 44.72 2.29
4385 7759 2.300437 CAGGAGTCCGAAGACCTCTTTT 59.700 50.000 2.76 0.00 44.72 2.27
4386 7760 1.896465 CAGGAGTCCGAAGACCTCTTT 59.104 52.381 2.76 0.00 44.72 2.52
4387 7761 1.075698 TCAGGAGTCCGAAGACCTCTT 59.924 52.381 2.76 0.00 44.72 2.85
4388 7762 0.699399 TCAGGAGTCCGAAGACCTCT 59.301 55.000 2.76 0.00 44.72 3.69
4389 7763 1.474879 CTTCAGGAGTCCGAAGACCTC 59.525 57.143 26.45 0.00 44.72 3.85
4390 7764 1.551452 CTTCAGGAGTCCGAAGACCT 58.449 55.000 26.45 0.00 44.72 3.85
4391 7765 0.533032 CCTTCAGGAGTCCGAAGACC 59.467 60.000 29.59 0.30 44.72 3.85
4392 7766 0.108567 GCCTTCAGGAGTCCGAAGAC 60.109 60.000 29.59 21.36 36.79 3.01
4393 7767 1.258445 GGCCTTCAGGAGTCCGAAGA 61.258 60.000 29.59 17.37 36.79 2.87
4394 7768 1.219393 GGCCTTCAGGAGTCCGAAG 59.781 63.158 24.88 24.88 37.39 3.79
4395 7769 2.646175 CGGCCTTCAGGAGTCCGAA 61.646 63.158 2.76 9.58 39.65 4.30
4396 7770 3.068691 CGGCCTTCAGGAGTCCGA 61.069 66.667 2.76 1.34 39.65 4.55
4397 7771 2.564553 CTTCGGCCTTCAGGAGTCCG 62.565 65.000 2.76 0.00 38.96 4.79
4398 7772 1.219393 CTTCGGCCTTCAGGAGTCC 59.781 63.158 0.00 0.00 37.39 3.85
4399 7773 0.174617 CTCTTCGGCCTTCAGGAGTC 59.825 60.000 0.00 0.00 37.39 3.36
4400 7774 0.543174 ACTCTTCGGCCTTCAGGAGT 60.543 55.000 0.00 3.08 37.39 3.85
4401 7775 0.108424 CACTCTTCGGCCTTCAGGAG 60.108 60.000 0.00 2.39 37.39 3.69
4402 7776 1.975327 CACTCTTCGGCCTTCAGGA 59.025 57.895 0.00 0.00 37.39 3.86
4403 7777 1.743252 GCACTCTTCGGCCTTCAGG 60.743 63.158 0.00 0.00 38.53 3.86
4404 7778 2.097038 CGCACTCTTCGGCCTTCAG 61.097 63.158 0.00 0.00 0.00 3.02
4405 7779 2.048222 CGCACTCTTCGGCCTTCA 60.048 61.111 0.00 0.00 0.00 3.02
4406 7780 2.048127 ACGCACTCTTCGGCCTTC 60.048 61.111 0.00 0.00 0.00 3.46
4407 7781 2.357517 CACGCACTCTTCGGCCTT 60.358 61.111 0.00 0.00 0.00 4.35
4411 7785 2.811317 GAGGCACGCACTCTTCGG 60.811 66.667 0.00 0.00 32.28 4.30
4412 7786 3.175240 CGAGGCACGCACTCTTCG 61.175 66.667 0.00 0.00 32.83 3.79
4413 7787 1.664965 AACGAGGCACGCACTCTTC 60.665 57.895 3.72 0.00 46.94 2.87
4414 7788 1.956170 CAACGAGGCACGCACTCTT 60.956 57.895 3.72 0.00 46.94 2.85
4415 7789 2.356313 CAACGAGGCACGCACTCT 60.356 61.111 3.72 0.00 46.94 3.24
4416 7790 4.077188 GCAACGAGGCACGCACTC 62.077 66.667 3.72 0.00 46.94 3.51
4417 7791 4.908687 TGCAACGAGGCACGCACT 62.909 61.111 3.72 0.00 46.94 4.40
4418 7792 4.374702 CTGCAACGAGGCACGCAC 62.375 66.667 3.72 0.00 46.94 5.34
4422 7796 4.395583 GCAGCTGCAACGAGGCAC 62.396 66.667 33.36 0.00 39.25 5.01
4432 7806 1.814586 CTAGCCAGAGTGCAGCTGC 60.815 63.158 31.89 31.89 37.45 5.25
4433 7807 1.814586 GCTAGCCAGAGTGCAGCTG 60.815 63.158 10.11 10.11 37.45 4.24
4434 7808 1.988956 AGCTAGCCAGAGTGCAGCT 60.989 57.895 12.13 2.73 39.34 4.24
4435 7809 1.814586 CAGCTAGCCAGAGTGCAGC 60.815 63.158 12.13 0.00 36.37 5.25
4436 7810 1.153409 CCAGCTAGCCAGAGTGCAG 60.153 63.158 12.13 0.00 0.00 4.41
4437 7811 2.984623 CCAGCTAGCCAGAGTGCA 59.015 61.111 12.13 0.00 0.00 4.57
4438 7812 2.513435 GCCAGCTAGCCAGAGTGC 60.513 66.667 12.13 1.49 0.00 4.40
4439 7813 0.743701 CAAGCCAGCTAGCCAGAGTG 60.744 60.000 12.13 2.12 0.00 3.51
4440 7814 1.601171 CAAGCCAGCTAGCCAGAGT 59.399 57.895 12.13 0.00 0.00 3.24
4441 7815 1.818785 GCAAGCCAGCTAGCCAGAG 60.819 63.158 12.13 0.00 0.00 3.35
4442 7816 2.270205 GCAAGCCAGCTAGCCAGA 59.730 61.111 12.13 0.00 0.00 3.86
4443 7817 2.113433 CAGCAAGCCAGCTAGCCAG 61.113 63.158 12.13 3.90 44.54 4.85
4444 7818 2.045634 CAGCAAGCCAGCTAGCCA 60.046 61.111 12.13 0.00 44.54 4.75
4445 7819 3.516212 GCAGCAAGCCAGCTAGCC 61.516 66.667 12.13 0.00 44.54 3.93
4468 7842 0.244450 TTACAAAGGCTGCTGCATGC 59.756 50.000 17.89 11.82 41.91 4.06
4469 7843 1.730121 CGTTACAAAGGCTGCTGCATG 60.730 52.381 17.89 14.34 41.91 4.06
4470 7844 0.523072 CGTTACAAAGGCTGCTGCAT 59.477 50.000 17.89 7.53 41.91 3.96
4471 7845 0.817634 ACGTTACAAAGGCTGCTGCA 60.818 50.000 17.89 0.88 41.91 4.41
4472 7846 0.385974 CACGTTACAAAGGCTGCTGC 60.386 55.000 7.10 7.10 38.76 5.25
4473 7847 1.225855 TCACGTTACAAAGGCTGCTG 58.774 50.000 0.00 0.00 0.00 4.41
4474 7848 2.185004 ATCACGTTACAAAGGCTGCT 57.815 45.000 0.00 0.00 0.00 4.24
4475 7849 2.989422 AATCACGTTACAAAGGCTGC 57.011 45.000 0.00 0.00 0.00 5.25
4476 7850 4.092968 GGACTAATCACGTTACAAAGGCTG 59.907 45.833 0.00 0.00 0.00 4.85
4477 7851 4.251268 GGACTAATCACGTTACAAAGGCT 58.749 43.478 0.00 0.00 0.00 4.58
4478 7852 3.998341 TGGACTAATCACGTTACAAAGGC 59.002 43.478 0.00 0.00 0.00 4.35
4479 7853 5.106830 GGTTGGACTAATCACGTTACAAAGG 60.107 44.000 0.00 0.00 0.00 3.11
4480 7854 5.389098 CGGTTGGACTAATCACGTTACAAAG 60.389 44.000 0.00 0.00 0.00 2.77
4481 7855 4.448395 CGGTTGGACTAATCACGTTACAAA 59.552 41.667 0.00 0.00 0.00 2.83
4482 7856 3.989167 CGGTTGGACTAATCACGTTACAA 59.011 43.478 0.00 0.00 0.00 2.41
4483 7857 3.255395 TCGGTTGGACTAATCACGTTACA 59.745 43.478 0.00 0.00 0.00 2.41
4484 7858 3.836949 TCGGTTGGACTAATCACGTTAC 58.163 45.455 0.00 0.00 0.00 2.50
4485 7859 4.487948 CTTCGGTTGGACTAATCACGTTA 58.512 43.478 0.00 0.00 0.00 3.18
4486 7860 3.323243 CTTCGGTTGGACTAATCACGTT 58.677 45.455 0.00 0.00 0.00 3.99
4487 7861 2.353406 CCTTCGGTTGGACTAATCACGT 60.353 50.000 0.00 0.00 0.00 4.49
4488 7862 2.268298 CCTTCGGTTGGACTAATCACG 58.732 52.381 0.00 0.00 0.00 4.35
4489 7863 2.007608 GCCTTCGGTTGGACTAATCAC 58.992 52.381 0.00 0.00 0.00 3.06
4490 7864 1.065709 GGCCTTCGGTTGGACTAATCA 60.066 52.381 0.00 0.00 0.00 2.57
4491 7865 1.664873 GGCCTTCGGTTGGACTAATC 58.335 55.000 0.00 0.00 0.00 1.75
4492 7866 0.255033 GGGCCTTCGGTTGGACTAAT 59.745 55.000 0.84 0.00 31.96 1.73
4493 7867 1.128809 TGGGCCTTCGGTTGGACTAA 61.129 55.000 4.53 0.00 31.96 2.24
4494 7868 1.536907 TGGGCCTTCGGTTGGACTA 60.537 57.895 4.53 0.00 31.96 2.59
4495 7869 2.852075 TGGGCCTTCGGTTGGACT 60.852 61.111 4.53 0.00 31.96 3.85
4496 7870 2.671963 GTGGGCCTTCGGTTGGAC 60.672 66.667 4.53 0.00 0.00 4.02
4497 7871 2.075355 AATGTGGGCCTTCGGTTGGA 62.075 55.000 4.53 0.00 0.00 3.53
4498 7872 0.322997 TAATGTGGGCCTTCGGTTGG 60.323 55.000 4.53 0.00 0.00 3.77
4499 7873 1.094785 CTAATGTGGGCCTTCGGTTG 58.905 55.000 4.53 0.00 0.00 3.77
4500 7874 0.679960 GCTAATGTGGGCCTTCGGTT 60.680 55.000 4.53 0.65 0.00 4.44
4501 7875 1.077716 GCTAATGTGGGCCTTCGGT 60.078 57.895 4.53 0.00 0.00 4.69
4502 7876 1.097547 CAGCTAATGTGGGCCTTCGG 61.098 60.000 4.53 0.00 0.00 4.30
4503 7877 0.107703 TCAGCTAATGTGGGCCTTCG 60.108 55.000 4.53 0.00 0.00 3.79
4504 7878 2.128771 TTCAGCTAATGTGGGCCTTC 57.871 50.000 4.53 0.00 0.00 3.46
4505 7879 2.762327 CAATTCAGCTAATGTGGGCCTT 59.238 45.455 4.53 0.00 0.00 4.35
4506 7880 2.025037 TCAATTCAGCTAATGTGGGCCT 60.025 45.455 4.53 0.00 0.00 5.19
4507 7881 2.378038 TCAATTCAGCTAATGTGGGCC 58.622 47.619 0.00 0.00 0.00 5.80
4508 7882 4.098349 TCAATCAATTCAGCTAATGTGGGC 59.902 41.667 0.00 0.00 0.00 5.36
4509 7883 5.840243 TCAATCAATTCAGCTAATGTGGG 57.160 39.130 0.00 0.00 0.00 4.61
4510 7884 6.017687 TCGATCAATCAATTCAGCTAATGTGG 60.018 38.462 0.00 0.00 0.00 4.17
4511 7885 6.951643 TCGATCAATCAATTCAGCTAATGTG 58.048 36.000 0.00 0.00 0.00 3.21
4512 7886 7.741027 ATCGATCAATCAATTCAGCTAATGT 57.259 32.000 0.00 0.00 0.00 2.71
4513 7887 7.749570 GGAATCGATCAATCAATTCAGCTAATG 59.250 37.037 0.00 0.00 33.07 1.90
4514 7888 7.094463 GGGAATCGATCAATCAATTCAGCTAAT 60.094 37.037 0.00 0.00 33.07 1.73
4515 7889 6.205464 GGGAATCGATCAATCAATTCAGCTAA 59.795 38.462 0.00 0.00 33.07 3.09
4516 7890 5.702670 GGGAATCGATCAATCAATTCAGCTA 59.297 40.000 0.00 0.00 33.07 3.32
4517 7891 4.518211 GGGAATCGATCAATCAATTCAGCT 59.482 41.667 0.00 0.00 33.07 4.24
4533 7907 2.023181 CAACGCGCATGGGAATCG 59.977 61.111 14.90 10.18 0.00 3.34
4573 9309 1.375853 GCATACATGCGGCCTGTTGA 61.376 55.000 15.89 0.00 44.67 3.18
4602 9340 4.702131 GCTGAGTTGGGAAGTGTATTTCAT 59.298 41.667 0.00 0.00 0.00 2.57
4617 9355 0.890996 GGTGGGGAGTTGCTGAGTTG 60.891 60.000 0.00 0.00 0.00 3.16
4619 9357 1.770110 TGGTGGGGAGTTGCTGAGT 60.770 57.895 0.00 0.00 0.00 3.41
4668 9407 1.262882 GTGTTACAGCCGCGTACTAC 58.737 55.000 4.92 0.00 0.00 2.73
4692 9431 2.443416 AGTGCATGGTCGACAGTAGTA 58.557 47.619 18.91 0.49 0.00 1.82
4698 9437 3.654201 GCAAGTGCATGGTCGACA 58.346 55.556 18.91 3.91 41.59 4.35
4723 9462 1.412079 AGTGCAGGATTGTTTTGCCA 58.588 45.000 0.00 0.00 37.03 4.92
4726 9465 5.940192 TGTACTAGTGCAGGATTGTTTTG 57.060 39.130 9.84 0.00 0.00 2.44
4736 9475 7.586664 CACATACGTATACTTGTACTAGTGCAG 59.413 40.741 18.57 10.47 0.00 4.41
4748 9487 5.981315 GTGCATGTACCACATACGTATACTT 59.019 40.000 7.96 0.00 36.53 2.24
4778 9517 8.136057 TGTCTACGTATACTAGTTTAGTGCTC 57.864 38.462 11.78 0.00 39.81 4.26
4791 9531 4.902448 CGTACATGCACTGTCTACGTATAC 59.098 45.833 4.25 4.25 39.39 1.47
4802 9542 1.969809 ATGCGCACGTACATGCACTG 61.970 55.000 14.90 0.00 46.47 3.66
4806 9546 1.580893 CACATGCGCACGTACATGC 60.581 57.895 14.90 3.27 46.08 4.06
4811 9551 1.446445 GGTACCACATGCGCACGTA 60.446 57.895 14.90 8.37 0.00 3.57
4814 9554 2.736682 GACGGTACCACATGCGCAC 61.737 63.158 14.90 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.