Multiple sequence alignment - TraesCS2D01G328600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G328600 chr2D 100.000 2231 0 0 1 2231 421813833 421816063 0.000000e+00 4120
1 TraesCS2D01G328600 chr2D 83.152 184 28 3 1737 1918 402310979 402310797 4.930000e-37 165
2 TraesCS2D01G328600 chr2B 87.190 1491 84 31 131 1560 494277797 494279241 0.000000e+00 1596
3 TraesCS2D01G328600 chr2B 90.962 343 26 2 1630 1972 494279507 494279844 7.260000e-125 457
4 TraesCS2D01G328600 chr2B 90.972 288 11 1 1959 2231 494281159 494281446 7.520000e-100 374
5 TraesCS2D01G328600 chr2A 85.642 1588 128 37 12 1558 568300082 568301610 0.000000e+00 1578
6 TraesCS2D01G328600 chr2A 89.934 606 55 4 1630 2231 568301856 568302459 0.000000e+00 776
7 TraesCS2D01G328600 chr3D 87.500 184 20 3 1737 1918 580128512 580128330 2.240000e-50 209
8 TraesCS2D01G328600 chr3D 84.393 173 26 1 1743 1914 73730149 73729977 3.810000e-38 169
9 TraesCS2D01G328600 chr3D 84.393 173 26 1 1743 1914 73731668 73731496 3.810000e-38 169
10 TraesCS2D01G328600 chr6B 85.632 174 23 2 1743 1915 20018507 20018335 4.890000e-42 182
11 TraesCS2D01G328600 chr6B 83.243 185 28 3 1732 1914 594876826 594876643 1.370000e-37 167
12 TraesCS2D01G328600 chr1D 83.420 193 25 7 1737 1925 221084210 221084021 2.950000e-39 172
13 TraesCS2D01G328600 chr7B 79.126 206 29 12 1016 1214 700541779 700541977 1.800000e-26 130
14 TraesCS2D01G328600 chr7A 78.846 208 26 16 1016 1214 701369767 701369965 8.370000e-25 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G328600 chr2D 421813833 421816063 2230 False 4120 4120 100.000 1 2231 1 chr2D.!!$F1 2230
1 TraesCS2D01G328600 chr2B 494277797 494281446 3649 False 809 1596 89.708 131 2231 3 chr2B.!!$F1 2100
2 TraesCS2D01G328600 chr2A 568300082 568302459 2377 False 1177 1578 87.788 12 2231 2 chr2A.!!$F1 2219

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 364 0.386731 GTTTGGTCCCGACAAATGCG 60.387 55.0 0.0 0.0 39.68 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1321 0.039798 CGTACATGTATAGGCGGCGT 60.04 55.0 9.18 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.317040 TCCTTCATCGGATACTCCACC 58.683 52.381 0.00 0.00 35.91 4.61
22 23 2.039418 CCTTCATCGGATACTCCACCA 58.961 52.381 0.00 0.00 35.91 4.17
28 29 2.106332 GATACTCCACCACCGCCG 59.894 66.667 0.00 0.00 0.00 6.46
32 33 4.436998 CTCCACCACCGCCGTCTC 62.437 72.222 0.00 0.00 0.00 3.36
44 45 1.172812 GCCGTCTCCAGCACCTTTTT 61.173 55.000 0.00 0.00 0.00 1.94
81 82 4.412270 CGGCGGCGAAAAATGGCA 62.412 61.111 29.19 0.00 0.00 4.92
95 96 1.517538 ATGGCAGGAATTGGGGTGGA 61.518 55.000 0.00 0.00 0.00 4.02
100 101 1.452108 GGAATTGGGGTGGAGAGCG 60.452 63.158 0.00 0.00 0.00 5.03
121 122 0.478942 CGGGATGGTAGAGGAGAGGA 59.521 60.000 0.00 0.00 0.00 3.71
154 155 1.135228 GTTTTGCCGTGGAAACAGTGT 60.135 47.619 0.00 0.00 44.46 3.55
155 156 2.039818 TTTGCCGTGGAAACAGTGTA 57.960 45.000 0.00 0.00 44.46 2.90
173 174 0.607762 TAGCCAACTCCAAATGCGCA 60.608 50.000 14.96 14.96 0.00 6.09
202 203 1.826054 CAGTTTTGGGTGTGCCGGA 60.826 57.895 5.05 0.00 34.97 5.14
229 231 1.339151 GGAGTCTAAAGTGGCTGGTGG 60.339 57.143 0.00 0.00 0.00 4.61
249 261 0.538746 CGTAAAGCCCCCTGGTTTGT 60.539 55.000 0.00 0.00 44.08 2.83
252 264 1.590591 AAAGCCCCCTGGTTTGTTTT 58.409 45.000 0.00 0.00 42.81 2.43
263 275 1.849829 GGTTTGTTTTCGGTTTGCGAG 59.150 47.619 0.00 0.00 0.00 5.03
270 282 1.288350 TTCGGTTTGCGAGAAAACGA 58.712 45.000 14.31 14.31 40.29 3.85
277 289 0.462225 TGCGAGAAAACGAACACCCA 60.462 50.000 0.00 0.00 35.09 4.51
312 324 3.088532 ACAAATGCGATACACCATTGGT 58.911 40.909 1.37 1.37 35.62 3.67
329 341 2.181521 GTTGGTTTGTGGCGTCCGA 61.182 57.895 0.00 0.00 0.00 4.55
336 348 0.745128 TTGTGGCGTCCGAACAGTTT 60.745 50.000 0.00 0.00 0.00 2.66
342 354 1.226030 CGTCCGAACAGTTTGGTCCC 61.226 60.000 17.96 7.73 35.57 4.46
347 359 1.670791 GAACAGTTTGGTCCCGACAA 58.329 50.000 0.00 0.00 0.00 3.18
348 360 2.018515 GAACAGTTTGGTCCCGACAAA 58.981 47.619 0.00 0.00 35.62 2.83
349 361 2.358322 ACAGTTTGGTCCCGACAAAT 57.642 45.000 0.00 0.00 39.68 2.32
350 362 1.953686 ACAGTTTGGTCCCGACAAATG 59.046 47.619 0.00 0.00 39.68 2.32
351 363 0.958822 AGTTTGGTCCCGACAAATGC 59.041 50.000 0.00 0.00 39.68 3.56
352 364 0.386731 GTTTGGTCCCGACAAATGCG 60.387 55.000 0.00 0.00 39.68 4.73
392 412 3.619483 CGTTGAAGATGCCCGTATTTACA 59.381 43.478 0.00 0.00 0.00 2.41
414 434 4.659529 ACCGATATGATCAGGGAGTAGA 57.340 45.455 0.09 0.00 0.00 2.59
415 435 4.337145 ACCGATATGATCAGGGAGTAGAC 58.663 47.826 0.09 0.00 0.00 2.59
433 464 1.812571 GACCTAACTTGTGGTGCATGG 59.187 52.381 0.00 0.00 36.59 3.66
436 467 2.747446 CCTAACTTGTGGTGCATGGTAC 59.253 50.000 0.00 0.00 0.00 3.34
460 492 5.556915 TGAAATTAACGAAGAGACATGGGT 58.443 37.500 0.00 0.00 0.00 4.51
488 542 5.290493 ACTGTTTACACACAGAGATTCCA 57.710 39.130 7.82 0.00 46.29 3.53
495 549 4.894784 ACACACAGAGATTCCAAACGTAT 58.105 39.130 0.00 0.00 0.00 3.06
496 550 4.690748 ACACACAGAGATTCCAAACGTATG 59.309 41.667 0.00 0.00 0.00 2.39
497 551 4.690748 CACACAGAGATTCCAAACGTATGT 59.309 41.667 0.00 0.00 0.00 2.29
498 552 5.867174 CACACAGAGATTCCAAACGTATGTA 59.133 40.000 0.00 0.00 0.00 2.29
688 742 2.960359 ATCCGGACCGCTCGATCTCA 62.960 60.000 6.12 0.00 0.00 3.27
702 756 2.940147 GATCTCAATCTCGATCGGGTG 58.060 52.381 15.95 7.10 0.00 4.61
712 766 2.203015 ATCGGGTGGCGGAAATCG 60.203 61.111 0.00 0.00 42.76 3.34
713 767 2.918230 GATCGGGTGGCGGAAATCGT 62.918 60.000 0.00 0.00 41.72 3.73
723 777 3.192922 GAAATCGTGGCCGTCCGG 61.193 66.667 9.08 0.24 38.57 5.14
813 875 2.988010 AGCTCTCTCACACACACAAA 57.012 45.000 0.00 0.00 0.00 2.83
817 879 3.261580 CTCTCTCACACACACAAACACA 58.738 45.455 0.00 0.00 0.00 3.72
819 881 1.729517 TCTCACACACACAAACACACG 59.270 47.619 0.00 0.00 0.00 4.49
821 883 1.125274 CACACACACAAACACACGCG 61.125 55.000 3.53 3.53 0.00 6.01
837 899 3.454573 CGCAAGCCACCATGCCAT 61.455 61.111 0.00 0.00 39.39 4.40
838 900 2.185867 GCAAGCCACCATGCCATG 59.814 61.111 0.00 0.00 36.56 3.66
839 901 2.185867 CAAGCCACCATGCCATGC 59.814 61.111 0.00 0.00 0.00 4.06
840 902 3.078836 AAGCCACCATGCCATGCC 61.079 61.111 0.00 0.00 0.00 4.40
888 950 2.270434 AATAGAGGGTGGCCTCTTCA 57.730 50.000 3.32 0.00 43.79 3.02
963 1025 4.683781 GCTAGCTAGCTAATCATCACACAC 59.316 45.833 33.71 3.53 45.62 3.82
965 1027 4.437239 AGCTAGCTAATCATCACACACAC 58.563 43.478 17.69 0.00 0.00 3.82
966 1028 4.161189 AGCTAGCTAATCATCACACACACT 59.839 41.667 17.69 0.00 0.00 3.55
967 1029 5.360999 AGCTAGCTAATCATCACACACACTA 59.639 40.000 17.69 0.00 0.00 2.74
1409 1482 9.586435 TTTATGTAGACATATCAAGTGTGAGTG 57.414 33.333 3.28 0.00 38.49 3.51
1410 1483 6.590234 TGTAGACATATCAAGTGTGAGTGT 57.410 37.500 0.00 0.00 38.53 3.55
1411 1484 6.389906 TGTAGACATATCAAGTGTGAGTGTG 58.610 40.000 3.23 0.00 36.94 3.82
1412 1485 5.474578 AGACATATCAAGTGTGAGTGTGT 57.525 39.130 3.23 0.00 36.94 3.72
1413 1486 5.233225 AGACATATCAAGTGTGAGTGTGTG 58.767 41.667 3.23 0.00 36.94 3.82
1414 1487 4.960938 ACATATCAAGTGTGAGTGTGTGT 58.039 39.130 0.00 0.00 37.14 3.72
1415 1488 4.751600 ACATATCAAGTGTGAGTGTGTGTG 59.248 41.667 0.00 0.00 37.14 3.82
1416 1489 2.760634 TCAAGTGTGAGTGTGTGTGT 57.239 45.000 0.00 0.00 0.00 3.72
1417 1490 2.345876 TCAAGTGTGAGTGTGTGTGTG 58.654 47.619 0.00 0.00 0.00 3.82
1418 1491 2.076100 CAAGTGTGAGTGTGTGTGTGT 58.924 47.619 0.00 0.00 0.00 3.72
1419 1492 1.725641 AGTGTGAGTGTGTGTGTGTG 58.274 50.000 0.00 0.00 0.00 3.82
1420 1493 1.001974 AGTGTGAGTGTGTGTGTGTGT 59.998 47.619 0.00 0.00 0.00 3.72
1421 1494 1.128507 GTGTGAGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
1422 1495 1.270571 TGTGAGTGTGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
1423 1496 1.128507 GTGAGTGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
1424 1497 1.270571 TGAGTGTGTGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
1425 1498 1.128507 GAGTGTGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
1461 1534 9.424319 GTGATCATATGTTATGTATCTTCGGTT 57.576 33.333 0.00 0.00 0.00 4.44
1496 1569 5.272397 GTGCGTGAGTACTATCTAGGTTTC 58.728 45.833 0.00 0.00 43.79 2.78
1523 1596 2.677836 TGTTCTGTCGAATAATGCAGCC 59.322 45.455 0.00 0.00 0.00 4.85
1564 1637 6.443934 TTTAATGAAATCATGTACGGGTGG 57.556 37.500 0.00 0.00 36.56 4.61
1565 1638 3.644966 ATGAAATCATGTACGGGTGGT 57.355 42.857 0.00 0.00 34.83 4.16
1566 1639 2.705730 TGAAATCATGTACGGGTGGTG 58.294 47.619 0.00 0.00 0.00 4.17
1570 1643 0.034198 TCATGTACGGGTGGTGTGTG 59.966 55.000 0.00 0.00 0.00 3.82
1573 1646 1.144496 GTACGGGTGGTGTGTGTGT 59.856 57.895 0.00 0.00 0.00 3.72
1574 1647 0.877213 GTACGGGTGGTGTGTGTGTC 60.877 60.000 0.00 0.00 0.00 3.67
1794 2080 4.396166 CCGGAAGTACAAAGCATCTCAAAT 59.604 41.667 0.00 0.00 0.00 2.32
1799 2085 9.937175 GGAAGTACAAAGCATCTCAAATATAAC 57.063 33.333 0.00 0.00 0.00 1.89
1842 2128 4.113354 GAGACCATCGAATGAACACTACC 58.887 47.826 0.00 0.00 0.00 3.18
1848 2134 0.739813 GAATGAACACTACCGCCGCT 60.740 55.000 0.00 0.00 0.00 5.52
1900 2186 2.790791 CCTCTACCGGAGCTGGCTG 61.791 68.421 9.46 0.00 40.57 4.85
1946 2233 1.453155 ATCATGTTTCAGACGGTGGC 58.547 50.000 0.00 0.00 0.00 5.01
2007 3622 6.629128 TGTAAAATGGAGCAAATGGTATGTG 58.371 36.000 0.00 0.00 0.00 3.21
2161 3791 9.249457 TGTCTTAAGATGATTCTACATAAAGCG 57.751 33.333 8.75 0.00 0.00 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.223377 CGTACAAAAAGGTGCTGGAGAC 59.777 50.000 0.00 0.00 0.00 3.36
32 33 0.596082 CCCGTACAAAAAGGTGCTGG 59.404 55.000 0.00 0.00 0.00 4.85
34 35 1.601166 GACCCGTACAAAAAGGTGCT 58.399 50.000 0.00 0.00 31.10 4.40
38 39 1.201414 GCATGGACCCGTACAAAAAGG 59.799 52.381 0.00 0.00 0.00 3.11
44 45 4.460683 GCCGCATGGACCCGTACA 62.461 66.667 0.00 0.00 37.49 2.90
68 69 2.001872 CAATTCCTGCCATTTTTCGCC 58.998 47.619 0.00 0.00 0.00 5.54
75 76 0.618393 CCACCCCAATTCCTGCCATT 60.618 55.000 0.00 0.00 0.00 3.16
77 78 2.153898 CTCCACCCCAATTCCTGCCA 62.154 60.000 0.00 0.00 0.00 4.92
80 81 0.394899 GCTCTCCACCCCAATTCCTG 60.395 60.000 0.00 0.00 0.00 3.86
81 82 1.915078 CGCTCTCCACCCCAATTCCT 61.915 60.000 0.00 0.00 0.00 3.36
95 96 3.227276 CTACCATCCCGCCGCTCT 61.227 66.667 0.00 0.00 0.00 4.09
100 101 1.152525 TCTCCTCTACCATCCCGCC 60.153 63.158 0.00 0.00 0.00 6.13
105 106 4.735369 TCTCAATCCTCTCCTCTACCATC 58.265 47.826 0.00 0.00 0.00 3.51
121 122 1.977854 GGCAAAACCCCCTTTCTCAAT 59.022 47.619 0.00 0.00 0.00 2.57
154 155 0.607762 TGCGCATTTGGAGTTGGCTA 60.608 50.000 5.66 0.00 0.00 3.93
155 156 1.870055 CTGCGCATTTGGAGTTGGCT 61.870 55.000 12.24 0.00 0.00 4.75
189 190 4.263572 CACCTCCGGCACACCCAA 62.264 66.667 0.00 0.00 0.00 4.12
202 203 1.893801 CCACTTTAGACTCCGACACCT 59.106 52.381 0.00 0.00 0.00 4.00
215 217 0.397187 TTACGCCACCAGCCACTTTA 59.603 50.000 0.00 0.00 38.78 1.85
229 231 1.605451 AAACCAGGGGGCTTTACGC 60.605 57.895 0.00 0.00 37.90 4.42
249 261 2.095532 TCGTTTTCTCGCAAACCGAAAA 59.904 40.909 0.00 0.00 46.81 2.29
252 264 1.004715 GTTCGTTTTCTCGCAAACCGA 60.005 47.619 0.00 0.00 45.15 4.69
263 275 2.557317 TCAGTCTGGGTGTTCGTTTTC 58.443 47.619 0.00 0.00 0.00 2.29
270 282 1.672356 GCGCATCAGTCTGGGTGTT 60.672 57.895 0.30 0.00 0.00 3.32
277 289 1.736126 CATTTGTCTGCGCATCAGTCT 59.264 47.619 12.24 0.00 43.32 3.24
312 324 1.451567 TTCGGACGCCACAAACCAA 60.452 52.632 0.00 0.00 0.00 3.67
329 341 2.131776 TTTGTCGGGACCAAACTGTT 57.868 45.000 0.00 0.00 0.00 3.16
336 348 2.359354 CCGCATTTGTCGGGACCA 60.359 61.111 0.00 0.00 42.99 4.02
342 354 2.408032 CCAAAATTGTCCGCATTTGTCG 59.592 45.455 0.00 0.00 32.29 4.35
347 359 1.347062 ACCCCAAAATTGTCCGCATT 58.653 45.000 0.00 0.00 0.00 3.56
348 360 2.099405 CTACCCCAAAATTGTCCGCAT 58.901 47.619 0.00 0.00 0.00 4.73
349 361 1.540267 CTACCCCAAAATTGTCCGCA 58.460 50.000 0.00 0.00 0.00 5.69
350 362 0.815095 CCTACCCCAAAATTGTCCGC 59.185 55.000 0.00 0.00 0.00 5.54
351 363 0.815095 GCCTACCCCAAAATTGTCCG 59.185 55.000 0.00 0.00 0.00 4.79
352 364 0.815095 CGCCTACCCCAAAATTGTCC 59.185 55.000 0.00 0.00 0.00 4.02
353 365 1.541379 ACGCCTACCCCAAAATTGTC 58.459 50.000 0.00 0.00 0.00 3.18
354 366 1.616374 CAACGCCTACCCCAAAATTGT 59.384 47.619 0.00 0.00 0.00 2.71
355 367 1.889829 TCAACGCCTACCCCAAAATTG 59.110 47.619 0.00 0.00 0.00 2.32
356 368 2.296073 TCAACGCCTACCCCAAAATT 57.704 45.000 0.00 0.00 0.00 1.82
392 412 4.767928 GTCTACTCCCTGATCATATCGGTT 59.232 45.833 0.00 0.00 33.74 4.44
414 434 1.144913 ACCATGCACCACAAGTTAGGT 59.855 47.619 0.00 0.00 39.10 3.08
415 435 1.909700 ACCATGCACCACAAGTTAGG 58.090 50.000 0.00 0.00 0.00 2.69
433 464 7.201530 CCCATGTCTCTTCGTTAATTTCAGTAC 60.202 40.741 0.00 0.00 0.00 2.73
436 467 5.643777 ACCCATGTCTCTTCGTTAATTTCAG 59.356 40.000 0.00 0.00 0.00 3.02
460 492 9.472361 GAATCTCTGTGTGTAAACAGTAAACTA 57.528 33.333 2.35 0.00 46.33 2.24
495 549 5.372343 TCCATTCTACCTACCTACGTACA 57.628 43.478 0.00 0.00 0.00 2.90
496 550 5.121454 CGATCCATTCTACCTACCTACGTAC 59.879 48.000 0.00 0.00 0.00 3.67
497 551 5.012046 TCGATCCATTCTACCTACCTACGTA 59.988 44.000 0.00 0.00 0.00 3.57
498 552 4.070716 CGATCCATTCTACCTACCTACGT 58.929 47.826 0.00 0.00 0.00 3.57
688 742 2.417516 CGCCACCCGATCGAGATT 59.582 61.111 18.66 0.00 40.02 2.40
723 777 2.966590 GATCGGGGAGATCGAGGC 59.033 66.667 0.00 0.00 45.35 4.70
746 800 1.449778 GGTCCTCGGCCACTAAAGC 60.450 63.158 2.24 0.00 0.00 3.51
821 883 2.185867 CATGGCATGGTGGCTTGC 59.814 61.111 19.80 0.00 44.10 4.01
888 950 1.972872 CTTGTGCTCAAGGAAGGTGT 58.027 50.000 18.64 0.00 45.02 4.16
966 1028 9.362539 CGCTACCTCTCTTGTTAATTAAGTTTA 57.637 33.333 0.00 0.00 0.00 2.01
967 1029 7.148457 GCGCTACCTCTCTTGTTAATTAAGTTT 60.148 37.037 0.00 0.00 0.00 2.66
975 1039 1.897133 TGGCGCTACCTCTCTTGTTAA 59.103 47.619 7.64 0.00 40.22 2.01
987 1051 2.353803 CCTTCCCATATACTGGCGCTAC 60.354 54.545 7.64 0.00 44.46 3.58
990 1054 0.685097 TCCTTCCCATATACTGGCGC 59.315 55.000 0.00 0.00 44.46 6.53
991 1055 1.276421 CCTCCTTCCCATATACTGGCG 59.724 57.143 0.00 0.00 44.46 5.69
1246 1319 0.239082 TACATGTATAGGCGGCGTCG 59.761 55.000 4.29 4.29 39.81 5.12
1247 1320 1.694639 GTACATGTATAGGCGGCGTC 58.305 55.000 9.18 1.71 0.00 5.19
1248 1321 0.039798 CGTACATGTATAGGCGGCGT 60.040 55.000 9.18 0.00 0.00 5.68
1346 1419 1.214589 CTGGCTAGGCACGTACGTT 59.785 57.895 20.23 7.31 0.00 3.99
1402 1475 1.270571 ACACACACACACACACTCACA 60.271 47.619 0.00 0.00 0.00 3.58
1403 1476 1.128507 CACACACACACACACACTCAC 59.871 52.381 0.00 0.00 0.00 3.51
1404 1477 1.270571 ACACACACACACACACACTCA 60.271 47.619 0.00 0.00 0.00 3.41
1405 1478 1.128507 CACACACACACACACACACTC 59.871 52.381 0.00 0.00 0.00 3.51
1406 1479 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
1407 1480 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1408 1481 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1409 1482 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1410 1483 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1411 1484 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1412 1485 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
1413 1486 1.533299 TCAACACACACACACACACAC 59.467 47.619 0.00 0.00 0.00 3.82
1414 1487 1.884235 TCAACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
1415 1488 2.161410 ACATCAACACACACACACACAC 59.839 45.455 0.00 0.00 0.00 3.82
1416 1489 2.161211 CACATCAACACACACACACACA 59.839 45.455 0.00 0.00 0.00 3.72
1417 1490 2.418280 TCACATCAACACACACACACAC 59.582 45.455 0.00 0.00 0.00 3.82
1418 1491 2.704572 TCACATCAACACACACACACA 58.295 42.857 0.00 0.00 0.00 3.72
1419 1492 3.312146 TGATCACATCAACACACACACAC 59.688 43.478 0.00 0.00 36.11 3.82
1420 1493 3.539604 TGATCACATCAACACACACACA 58.460 40.909 0.00 0.00 36.11 3.72
1421 1494 4.754372 ATGATCACATCAACACACACAC 57.246 40.909 0.00 0.00 43.50 3.82
1422 1495 5.939296 ACATATGATCACATCAACACACACA 59.061 36.000 10.38 0.00 43.50 3.72
1423 1496 6.426980 ACATATGATCACATCAACACACAC 57.573 37.500 10.38 0.00 43.50 3.82
1424 1497 8.614346 CATAACATATGATCACATCAACACACA 58.386 33.333 10.38 0.00 43.50 3.72
1425 1498 8.615211 ACATAACATATGATCACATCAACACAC 58.385 33.333 10.38 0.00 43.50 3.82
1491 1564 3.374745 TCGACAGAACACTTACGAAACC 58.625 45.455 0.00 0.00 0.00 3.27
1496 1569 5.061684 TGCATTATTCGACAGAACACTTACG 59.938 40.000 0.00 0.00 39.48 3.18
1523 1596 6.830324 TCATTAAATCCCTTGTCATCTCTTGG 59.170 38.462 0.00 0.00 0.00 3.61
1607 1736 4.614946 TGCAGTTCATGTATCGAGATCAG 58.385 43.478 0.00 0.00 0.00 2.90
1799 2085 9.065871 GGTCTCGAAATCTCAATGTAATTTTTG 57.934 33.333 0.00 0.00 31.22 2.44
1832 2118 0.961857 TCTAGCGGCGGTAGTGTTCA 60.962 55.000 35.95 20.08 35.44 3.18
1835 2121 1.509923 GTTCTAGCGGCGGTAGTGT 59.490 57.895 35.95 0.00 35.44 3.55
1848 2134 2.483745 CGTCAGCGGCTCGTTCTA 59.516 61.111 0.00 0.00 0.00 2.10
1895 2181 1.296392 CATCGACAAGGTCCAGCCA 59.704 57.895 0.00 0.00 40.61 4.75
1900 2186 4.650754 ATAGTGTACATCGACAAGGTCC 57.349 45.455 0.00 0.00 0.00 4.46
1946 2233 3.331150 TGCCCTGTGTAGAAAATGTACG 58.669 45.455 0.00 0.00 0.00 3.67
2007 3622 7.875316 TCGTGCTAAATCTTCTTCTATATGC 57.125 36.000 0.00 0.00 0.00 3.14
2071 3686 9.702253 AGAACTGTCTCTCTAATAAGGTAATCA 57.298 33.333 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.