Multiple sequence alignment - TraesCS2D01G327900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G327900 chr2D 100.000 4658 0 0 1 4658 421137572 421142229 0.000000e+00 8602.0
1 TraesCS2D01G327900 chr2A 96.077 1912 53 9 2749 4656 547414834 547412941 0.000000e+00 3096.0
2 TraesCS2D01G327900 chr2A 95.766 1913 58 10 2749 4656 567378241 567380135 0.000000e+00 3062.0
3 TraesCS2D01G327900 chr2A 89.101 1991 131 38 658 2601 547416784 547414833 0.000000e+00 2396.0
4 TraesCS2D01G327900 chr2A 88.672 1995 138 40 658 2601 567376285 567378242 0.000000e+00 2351.0
5 TraesCS2D01G327900 chr2A 90.744 605 36 7 1 602 567373414 567374001 0.000000e+00 789.0
6 TraesCS2D01G327900 chr2A 90.397 604 39 6 1 602 547419553 547418967 0.000000e+00 776.0
7 TraesCS2D01G327900 chr2A 92.754 69 5 0 600 668 547417721 547417653 2.970000e-17 100.0
8 TraesCS2D01G327900 chr2A 93.182 44 2 1 1229 1272 290092837 290092879 3.890000e-06 63.9
9 TraesCS2D01G327900 chr2B 92.670 1337 75 16 1269 2601 493712484 493713801 0.000000e+00 1905.0
10 TraesCS2D01G327900 chr2B 96.784 1026 21 2 2749 3770 493713800 493714817 0.000000e+00 1701.0
11 TraesCS2D01G327900 chr2B 94.938 889 30 5 3771 4658 493715034 493715908 0.000000e+00 1378.0
12 TraesCS2D01G327900 chr2B 87.175 616 49 10 669 1264 493711825 493712430 0.000000e+00 673.0
13 TraesCS2D01G327900 chr2B 93.750 368 17 2 304 666 493658832 493659198 8.810000e-152 547.0
14 TraesCS2D01G327900 chr2B 100.000 30 0 0 1269 1298 767910981 767911010 6.510000e-04 56.5
15 TraesCS2D01G327900 chr3D 89.542 153 6 5 2599 2751 411617718 411617860 7.960000e-43 185.0
16 TraesCS2D01G327900 chr3D 98.246 57 1 0 2699 2755 13630707 13630763 2.970000e-17 100.0
17 TraesCS2D01G327900 chr3D 90.000 70 7 0 2701 2770 14846720 14846651 1.780000e-14 91.6
18 TraesCS2D01G327900 chr3D 96.875 32 0 1 1226 1256 251316007 251316038 8.000000e-03 52.8
19 TraesCS2D01G327900 chr7D 92.381 105 2 2 2600 2698 626357543 626357439 1.350000e-30 145.0
20 TraesCS2D01G327900 chr7B 93.137 102 2 2 2597 2698 15305770 15305674 1.350000e-30 145.0
21 TraesCS2D01G327900 chr6D 92.308 104 2 2 2599 2696 178852319 178852216 4.860000e-30 143.0
22 TraesCS2D01G327900 chr6D 83.333 96 8 4 2664 2751 47977927 47977832 1.070000e-11 82.4
23 TraesCS2D01G327900 chr6B 92.308 104 2 2 2599 2696 293966169 293966272 4.860000e-30 143.0
24 TraesCS2D01G327900 chr6B 97.368 38 1 0 1229 1266 711316989 711317026 1.080000e-06 65.8
25 TraesCS2D01G327900 chr6B 94.737 38 0 2 1269 1306 240044922 240044957 1.810000e-04 58.4
26 TraesCS2D01G327900 chr1B 93.069 101 1 3 2600 2700 159922636 159922542 4.860000e-30 143.0
27 TraesCS2D01G327900 chr1B 95.082 61 1 2 2701 2761 229263219 229263277 1.380000e-15 95.3
28 TraesCS2D01G327900 chr1B 95.556 45 1 1 1226 1269 48266481 48266437 2.330000e-08 71.3
29 TraesCS2D01G327900 chr1B 97.436 39 1 0 1230 1268 249625215 249625177 3.010000e-07 67.6
30 TraesCS2D01G327900 chr5D 90.741 108 4 2 2597 2698 2138573 2138680 6.280000e-29 139.0
31 TraesCS2D01G327900 chr5D 100.000 55 0 0 2699 2753 547057263 547057209 8.250000e-18 102.0
32 TraesCS2D01G327900 chr5D 94.118 34 2 0 1223 1256 113384572 113384605 8.000000e-03 52.8
33 TraesCS2D01G327900 chr5A 91.429 105 3 2 2600 2698 649239366 649239262 6.280000e-29 139.0
34 TraesCS2D01G327900 chr5A 95.122 41 2 0 1229 1269 410499907 410499867 1.080000e-06 65.8
35 TraesCS2D01G327900 chr5A 94.444 36 2 0 1229 1264 671984944 671984909 6.510000e-04 56.5
36 TraesCS2D01G327900 chr1A 90.741 108 4 2 2597 2698 361354246 361354353 6.280000e-29 139.0
37 TraesCS2D01G327900 chr1A 94.872 39 2 0 1230 1268 225514503 225514541 1.400000e-05 62.1
38 TraesCS2D01G327900 chr1A 92.308 39 2 1 1230 1267 21715573 21715535 2.000000e-03 54.7
39 TraesCS2D01G327900 chr4B 98.246 57 1 0 2697 2753 482659603 482659547 2.970000e-17 100.0
40 TraesCS2D01G327900 chr3B 98.214 56 1 0 2699 2754 539670626 539670681 1.070000e-16 99.0
41 TraesCS2D01G327900 chr3B 96.610 59 1 1 2699 2757 5945535 5945478 3.840000e-16 97.1
42 TraesCS2D01G327900 chr3B 100.000 33 0 0 1227 1259 597173735 597173703 1.400000e-05 62.1
43 TraesCS2D01G327900 chrUn 93.750 48 1 2 1226 1272 298717872 298717918 2.330000e-08 71.3
44 TraesCS2D01G327900 chrUn 93.750 48 1 2 1226 1272 476556762 476556808 2.330000e-08 71.3
45 TraesCS2D01G327900 chr5B 93.750 48 1 2 1226 1272 480799577 480799531 2.330000e-08 71.3
46 TraesCS2D01G327900 chr6A 95.349 43 1 1 1230 1272 445250735 445250694 3.010000e-07 67.6
47 TraesCS2D01G327900 chr6A 90.909 44 3 1 1229 1272 489860095 489860053 1.810000e-04 58.4
48 TraesCS2D01G327900 chr4A 91.837 49 3 1 1227 1274 467246606 467246558 3.010000e-07 67.6
49 TraesCS2D01G327900 chr7A 95.122 41 2 0 1229 1269 184254114 184254154 1.080000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G327900 chr2D 421137572 421142229 4657 False 8602.000000 8602 100.000000 1 4658 1 chr2D.!!$F1 4657
1 TraesCS2D01G327900 chr2A 567373414 567380135 6721 False 2067.333333 3062 91.727333 1 4656 3 chr2A.!!$F2 4655
2 TraesCS2D01G327900 chr2A 547412941 547419553 6612 True 1592.000000 3096 92.082250 1 4656 4 chr2A.!!$R1 4655
3 TraesCS2D01G327900 chr2B 493711825 493715908 4083 False 1414.250000 1905 92.891750 669 4658 4 chr2B.!!$F3 3989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 3170 0.034059 AGCTACCTATGCGATGCACC 59.966 55.0 0.00 0.0 43.04 5.01 F
1016 3281 0.037046 CCAATGGCCAAGGAAAGCAC 60.037 55.0 20.11 0.0 0.00 4.40 F
2626 4978 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 4602 0.037232 CTTCCCGTCCCTCTGTGTTC 60.037 60.0 0.00 0.0 0.00 3.18 R
2732 5084 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.0 0.00 0.0 0.00 3.46 R
4194 6768 1.388547 TGATGCGCAAGGAATTACCC 58.611 50.0 17.11 0.0 45.01 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.139058 TCCCTTCTTAGAATCCTGCGC 59.861 52.381 0.00 0.00 0.00 6.09
31 32 1.139853 CCCTTCTTAGAATCCTGCGCT 59.860 52.381 9.73 0.00 0.00 5.92
56 57 1.909986 AGGAGCCCTAAGGTGAAGTTC 59.090 52.381 0.00 0.00 34.57 3.01
156 157 7.936950 TTTGAAATACTCTGATCAGATAGCG 57.063 36.000 25.30 15.88 36.76 4.26
157 158 6.641169 TGAAATACTCTGATCAGATAGCGT 57.359 37.500 25.30 20.41 36.76 5.07
158 159 6.673106 TGAAATACTCTGATCAGATAGCGTC 58.327 40.000 25.30 18.72 36.76 5.19
159 160 6.263168 TGAAATACTCTGATCAGATAGCGTCA 59.737 38.462 25.30 20.72 36.76 4.35
201 202 1.904287 CATTTGTCTTTCCGTCCCCA 58.096 50.000 0.00 0.00 0.00 4.96
263 265 3.151022 GGAGCCCAGAGGAGGACG 61.151 72.222 0.00 0.00 33.47 4.79
276 278 1.078426 AGGACGGCAAGCACATACC 60.078 57.895 0.00 0.00 0.00 2.73
306 308 6.332735 AGGCTTTCCTTGACTACATTTTTC 57.667 37.500 0.00 0.00 40.66 2.29
307 309 6.071320 AGGCTTTCCTTGACTACATTTTTCT 58.929 36.000 0.00 0.00 40.66 2.52
362 364 2.169352 CCATGAATCTCAACCGTCCTCT 59.831 50.000 0.00 0.00 0.00 3.69
374 376 1.067142 CCGTCCTCTTCGAATCCAACA 60.067 52.381 0.00 0.00 0.00 3.33
378 380 2.303022 TCCTCTTCGAATCCAACAGCTT 59.697 45.455 0.00 0.00 0.00 3.74
379 381 2.417933 CCTCTTCGAATCCAACAGCTTG 59.582 50.000 0.00 0.00 0.00 4.01
388 390 0.954452 CCAACAGCTTGAGACCAACC 59.046 55.000 0.00 0.00 0.00 3.77
392 394 2.301346 ACAGCTTGAGACCAACCAAAG 58.699 47.619 0.00 0.00 0.00 2.77
452 454 4.286808 TGAACCTTTGGAGATCATGTGAGA 59.713 41.667 0.00 0.00 0.00 3.27
453 455 4.916041 ACCTTTGGAGATCATGTGAGAA 57.084 40.909 0.00 0.00 0.00 2.87
457 459 5.996513 CCTTTGGAGATCATGTGAGAATAGG 59.003 44.000 0.00 0.00 0.00 2.57
462 464 6.718912 TGGAGATCATGTGAGAATAGGTCTAG 59.281 42.308 0.00 0.00 36.41 2.43
476 478 1.066358 GGTCTAGAAAAGTCCCCACCG 60.066 57.143 0.00 0.00 0.00 4.94
494 496 1.081892 CGTCATCAAGGAAGTGGCAG 58.918 55.000 0.00 0.00 0.00 4.85
500 502 4.834496 TCATCAAGGAAGTGGCAGAAAAAT 59.166 37.500 0.00 0.00 0.00 1.82
511 513 5.306678 AGTGGCAGAAAAATATCACCCAAAA 59.693 36.000 0.00 0.00 0.00 2.44
551 553 4.838986 AGGCAGTCTAAACTCTAAACTCCA 59.161 41.667 0.00 0.00 31.71 3.86
552 554 5.046950 AGGCAGTCTAAACTCTAAACTCCAG 60.047 44.000 0.00 0.00 31.71 3.86
554 556 6.071503 GGCAGTCTAAACTCTAAACTCCAGTA 60.072 42.308 0.00 0.00 31.71 2.74
555 557 7.363968 GGCAGTCTAAACTCTAAACTCCAGTAT 60.364 40.741 0.00 0.00 31.71 2.12
556 558 8.684520 GCAGTCTAAACTCTAAACTCCAGTATA 58.315 37.037 0.00 0.00 31.71 1.47
592 595 9.811995 AAGTAAATCAGTAAAGGGAAAAACAAC 57.188 29.630 0.00 0.00 0.00 3.32
602 605 4.866921 AGGGAAAAACAACGAAGCATAAC 58.133 39.130 0.00 0.00 0.00 1.89
604 607 3.666797 GGAAAAACAACGAAGCATAACCG 59.333 43.478 0.00 0.00 0.00 4.44
606 609 1.519408 AACAACGAAGCATAACCGCT 58.481 45.000 0.00 0.00 46.67 5.52
607 610 0.796312 ACAACGAAGCATAACCGCTG 59.204 50.000 0.00 0.00 42.89 5.18
608 611 1.075542 CAACGAAGCATAACCGCTGA 58.924 50.000 0.00 0.00 42.89 4.26
652 2003 1.980772 AGCAACCAAGGAGCATGCC 60.981 57.895 15.66 5.80 37.73 4.40
654 2005 1.304713 CAACCAAGGAGCATGCCCT 60.305 57.895 15.66 17.53 35.03 5.19
789 3022 3.686241 TCGAGATTGCTTTCATTCCACAG 59.314 43.478 0.00 0.00 0.00 3.66
790 3023 3.730061 CGAGATTGCTTTCATTCCACAGC 60.730 47.826 0.00 0.00 0.00 4.40
840 3102 4.446889 CCCTTAAATCCTCTGATTCCTGGG 60.447 50.000 0.00 0.00 40.34 4.45
852 3114 3.326588 TGATTCCTGGGAGAAGAACGAAA 59.673 43.478 0.00 0.00 0.00 3.46
853 3115 3.402628 TTCCTGGGAGAAGAACGAAAG 57.597 47.619 0.00 0.00 0.00 2.62
857 3119 3.306780 CCTGGGAGAAGAACGAAAGCTTA 60.307 47.826 0.00 0.00 0.00 3.09
881 3146 7.092137 ACCACAAAGGAAGTAAACAAAGTAC 57.908 36.000 0.00 0.00 41.22 2.73
888 3153 3.872560 AGTAAACAAAGTACGCACAGC 57.127 42.857 0.00 0.00 0.00 4.40
890 3155 4.624015 AGTAAACAAAGTACGCACAGCTA 58.376 39.130 0.00 0.00 0.00 3.32
891 3156 3.872560 AAACAAAGTACGCACAGCTAC 57.127 42.857 0.00 0.00 0.00 3.58
903 3168 0.752658 ACAGCTACCTATGCGATGCA 59.247 50.000 0.00 0.00 44.86 3.96
904 3169 1.143305 CAGCTACCTATGCGATGCAC 58.857 55.000 0.00 0.00 43.04 4.57
905 3170 0.034059 AGCTACCTATGCGATGCACC 59.966 55.000 0.00 0.00 43.04 5.01
906 3171 1.284982 GCTACCTATGCGATGCACCG 61.285 60.000 0.00 0.00 43.04 4.94
907 3172 0.667487 CTACCTATGCGATGCACCGG 60.667 60.000 0.82 0.00 43.04 5.28
908 3173 1.396607 TACCTATGCGATGCACCGGT 61.397 55.000 0.82 0.00 43.04 5.28
910 3175 1.227234 CTATGCGATGCACCGGTCA 60.227 57.895 2.59 6.66 43.04 4.02
911 3176 1.217585 CTATGCGATGCACCGGTCAG 61.218 60.000 2.59 0.00 43.04 3.51
912 3177 1.955495 TATGCGATGCACCGGTCAGT 61.955 55.000 2.59 0.00 43.04 3.41
915 3180 2.982130 GATGCACCGGTCAGTCCT 59.018 61.111 2.59 0.00 0.00 3.85
916 3181 1.153549 GATGCACCGGTCAGTCCTC 60.154 63.158 2.59 0.00 0.00 3.71
917 3182 1.888436 GATGCACCGGTCAGTCCTCA 61.888 60.000 2.59 0.00 0.00 3.86
920 3185 2.200370 ACCGGTCAGTCCTCACCA 59.800 61.111 0.00 0.00 32.33 4.17
921 3186 1.908793 ACCGGTCAGTCCTCACCAG 60.909 63.158 0.00 0.00 32.33 4.00
922 3187 2.262915 CGGTCAGTCCTCACCAGC 59.737 66.667 0.00 0.00 32.33 4.85
923 3188 2.665603 GGTCAGTCCTCACCAGCC 59.334 66.667 0.00 0.00 32.33 4.85
924 3189 2.217038 GGTCAGTCCTCACCAGCCA 61.217 63.158 0.00 0.00 32.33 4.75
925 3190 1.754745 GTCAGTCCTCACCAGCCAA 59.245 57.895 0.00 0.00 0.00 4.52
926 3191 0.603975 GTCAGTCCTCACCAGCCAAC 60.604 60.000 0.00 0.00 0.00 3.77
927 3192 1.053835 TCAGTCCTCACCAGCCAACA 61.054 55.000 0.00 0.00 0.00 3.33
928 3193 0.886490 CAGTCCTCACCAGCCAACAC 60.886 60.000 0.00 0.00 0.00 3.32
929 3194 1.600916 GTCCTCACCAGCCAACACC 60.601 63.158 0.00 0.00 0.00 4.16
932 3197 1.152984 CTCACCAGCCAACACCACA 60.153 57.895 0.00 0.00 0.00 4.17
935 3200 2.912025 CCAGCCAACACCACACCC 60.912 66.667 0.00 0.00 0.00 4.61
936 3201 2.912025 CAGCCAACACCACACCCC 60.912 66.667 0.00 0.00 0.00 4.95
941 3206 1.536676 CAACACCACACCCCTCCTT 59.463 57.895 0.00 0.00 0.00 3.36
949 3214 2.105477 CCACACCCCTCCTTCATATGAG 59.895 54.545 5.39 0.75 0.00 2.90
965 3230 2.930826 TGAGAGGGTTTGTGACTTCC 57.069 50.000 0.00 0.00 0.00 3.46
988 3253 3.002791 AGTTCATACAGTGATGCAACCG 58.997 45.455 0.00 0.00 36.54 4.44
1016 3281 0.037046 CCAATGGCCAAGGAAAGCAC 60.037 55.000 20.11 0.00 0.00 4.40
1029 3294 2.155279 GAAAGCACTCCTCCTCCAAAC 58.845 52.381 0.00 0.00 0.00 2.93
1067 3332 4.553323 CCCATCAGAAACTCAAGCAAAAG 58.447 43.478 0.00 0.00 0.00 2.27
1119 3384 2.182825 CTAAGCGCAGTCGTATTCGTT 58.817 47.619 11.47 0.00 38.14 3.85
1145 3410 3.981071 TTCCTCGGCATATTATCCTGG 57.019 47.619 0.00 0.00 0.00 4.45
1149 3414 1.278985 TCGGCATATTATCCTGGGCAG 59.721 52.381 0.00 0.00 0.00 4.85
1162 3427 0.704076 TGGGCAGGTTTTCTATGGCT 59.296 50.000 0.00 0.00 39.31 4.75
1166 3431 3.206964 GGCAGGTTTTCTATGGCTCTAC 58.793 50.000 0.00 0.00 36.63 2.59
1188 3453 6.482898 ACAGAGCTGACTCATAATTCTCAT 57.517 37.500 4.21 0.00 46.09 2.90
1244 3509 2.180086 AGCATATACTCCCTCTGTCCCA 59.820 50.000 0.00 0.00 0.00 4.37
1264 3529 5.694006 TCCCAAATTACTTGTCGCAAAAATG 59.306 36.000 0.00 0.00 32.65 2.32
1265 3530 5.107143 CCCAAATTACTTGTCGCAAAAATGG 60.107 40.000 0.00 0.00 32.65 3.16
1266 3531 5.694006 CCAAATTACTTGTCGCAAAAATGGA 59.306 36.000 0.00 0.00 32.65 3.41
1302 3616 6.041296 GGACGGAGGGAGTATTTATTTACTCA 59.959 42.308 12.27 0.00 46.54 3.41
1364 3678 4.006319 AGATTTCTCTAGCACTTGTTGGC 58.994 43.478 0.00 0.00 0.00 4.52
1458 3772 4.636206 GCTCAAATAGTACAGTTGGGAAGG 59.364 45.833 8.79 0.00 34.53 3.46
1461 3775 6.001460 TCAAATAGTACAGTTGGGAAGGTTG 58.999 40.000 0.00 0.00 33.03 3.77
1462 3776 5.578157 AATAGTACAGTTGGGAAGGTTGT 57.422 39.130 0.00 0.00 0.00 3.32
1463 3777 3.208747 AGTACAGTTGGGAAGGTTGTG 57.791 47.619 0.00 0.00 0.00 3.33
1541 3857 1.102154 TTGCAGCGTATTTCATGGGG 58.898 50.000 0.00 0.00 0.00 4.96
1672 4008 2.437413 GAGACCTTTTGCCTCCGAAAT 58.563 47.619 0.00 0.00 0.00 2.17
1704 4040 8.478877 CCCTTCAAAGAGTCACAGTACTATTAT 58.521 37.037 0.00 0.00 30.97 1.28
1743 4088 4.812653 AGGATACCTCGTAGGGTACAAAT 58.187 43.478 0.00 0.00 43.58 2.32
1761 4106 6.573664 ACAAATAGTATGAAGCACAGCAAA 57.426 33.333 0.00 0.00 0.00 3.68
1768 4113 3.865011 TGAAGCACAGCAAACTTTTCA 57.135 38.095 0.00 0.00 0.00 2.69
1776 4121 3.763897 ACAGCAAACTTTTCACTCCAACT 59.236 39.130 0.00 0.00 0.00 3.16
1794 4139 8.041323 ACTCCAACTAATTCATAGTGATTTCGT 58.959 33.333 0.00 0.00 44.22 3.85
1810 4155 4.768130 TTTCGTTGTTTTTCAGGTCACA 57.232 36.364 0.00 0.00 0.00 3.58
1831 4176 5.791974 CACAAAGACAATGAAATAGACTGCG 59.208 40.000 0.00 0.00 0.00 5.18
1920 4265 5.794894 ACGATACCAGATTCAAAGAACTGT 58.205 37.500 0.00 0.00 0.00 3.55
2040 4385 2.634453 CCAAGGGAAGACATTGGCTTTT 59.366 45.455 6.15 0.00 37.28 2.27
2043 4388 1.620323 GGGAAGACATTGGCTTTTGCT 59.380 47.619 6.15 0.00 46.54 3.91
2123 4468 4.557205 AGTAAGCAGTGTTTAGTTCCGAG 58.443 43.478 0.00 0.00 0.00 4.63
2129 4474 3.123621 CAGTGTTTAGTTCCGAGACATGC 59.876 47.826 0.00 0.00 0.00 4.06
2136 4481 4.471904 AGTTCCGAGACATGCTATGAAA 57.528 40.909 0.00 0.00 0.00 2.69
2141 4486 7.552687 AGTTCCGAGACATGCTATGAAAAATAA 59.447 33.333 0.00 0.00 0.00 1.40
2187 4532 4.036027 CACTGATCCTGACATTAACATGCC 59.964 45.833 0.00 0.00 33.05 4.40
2255 4600 2.700897 GGTAGGCAGGCATTCTTAGAGA 59.299 50.000 0.00 0.00 0.00 3.10
2256 4601 3.134804 GGTAGGCAGGCATTCTTAGAGAA 59.865 47.826 0.00 0.00 38.78 2.87
2257 4602 3.557228 AGGCAGGCATTCTTAGAGAAG 57.443 47.619 0.00 0.00 37.69 2.85
2258 4603 3.110705 AGGCAGGCATTCTTAGAGAAGA 58.889 45.455 0.00 0.00 37.69 2.87
2271 4616 1.889829 AGAGAAGAACACAGAGGGACG 59.110 52.381 0.00 0.00 0.00 4.79
2535 4880 4.089493 CGTGTAACATTCAGTACGTTGGAG 59.911 45.833 0.00 0.00 35.74 3.86
2549 4894 2.932614 CGTTGGAGCTCCATACTTTCAG 59.067 50.000 35.42 17.37 46.97 3.02
2561 4906 4.956075 CCATACTTTCAGGGGTTTTATGCT 59.044 41.667 0.00 0.00 0.00 3.79
2604 4956 7.894753 ACCACTTAGTCTACCTTAATACTCC 57.105 40.000 0.00 0.00 0.00 3.85
2605 4957 6.838090 ACCACTTAGTCTACCTTAATACTCCC 59.162 42.308 0.00 0.00 0.00 4.30
2606 4958 7.068061 CCACTTAGTCTACCTTAATACTCCCT 58.932 42.308 0.00 0.00 0.00 4.20
2607 4959 7.231115 CCACTTAGTCTACCTTAATACTCCCTC 59.769 44.444 0.00 0.00 0.00 4.30
2608 4960 7.231115 CACTTAGTCTACCTTAATACTCCCTCC 59.769 44.444 0.00 0.00 0.00 4.30
2609 4961 4.727677 AGTCTACCTTAATACTCCCTCCG 58.272 47.826 0.00 0.00 0.00 4.63
2610 4962 4.167697 AGTCTACCTTAATACTCCCTCCGT 59.832 45.833 0.00 0.00 0.00 4.69
2611 4963 4.518590 GTCTACCTTAATACTCCCTCCGTC 59.481 50.000 0.00 0.00 0.00 4.79
2612 4964 2.675583 ACCTTAATACTCCCTCCGTCC 58.324 52.381 0.00 0.00 0.00 4.79
2613 4965 1.612463 CCTTAATACTCCCTCCGTCCG 59.388 57.143 0.00 0.00 0.00 4.79
2614 4966 2.579873 CTTAATACTCCCTCCGTCCGA 58.420 52.381 0.00 0.00 0.00 4.55
2615 4967 2.734755 TAATACTCCCTCCGTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
2616 4968 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
2617 4969 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2618 4970 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
2619 4971 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
2620 4972 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
2621 4973 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
2622 4974 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
2623 4975 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
2624 4976 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
2625 4977 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
2626 4978 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
2627 4979 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
2628 4980 1.605753 GTCCGAAAAAGCTTGTCCCT 58.394 50.000 0.00 0.00 0.00 4.20
2629 4981 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
2630 4982 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
2631 4983 1.266989 CCGAAAAAGCTTGTCCCTCAC 59.733 52.381 0.00 0.00 0.00 3.51
2632 4984 1.266989 CGAAAAAGCTTGTCCCTCACC 59.733 52.381 0.00 0.00 0.00 4.02
2633 4985 2.587522 GAAAAAGCTTGTCCCTCACCT 58.412 47.619 0.00 0.00 0.00 4.00
2634 4986 2.278332 AAAAGCTTGTCCCTCACCTC 57.722 50.000 0.00 0.00 0.00 3.85
2635 4987 1.140312 AAAGCTTGTCCCTCACCTCA 58.860 50.000 0.00 0.00 0.00 3.86
2636 4988 1.140312 AAGCTTGTCCCTCACCTCAA 58.860 50.000 0.00 0.00 0.00 3.02
2637 4989 1.140312 AGCTTGTCCCTCACCTCAAA 58.860 50.000 0.00 0.00 0.00 2.69
2638 4990 1.707427 AGCTTGTCCCTCACCTCAAAT 59.293 47.619 0.00 0.00 0.00 2.32
2639 4991 1.815003 GCTTGTCCCTCACCTCAAATG 59.185 52.381 0.00 0.00 0.00 2.32
2640 4992 2.440409 CTTGTCCCTCACCTCAAATGG 58.560 52.381 0.00 0.00 0.00 3.16
2641 4993 1.741028 TGTCCCTCACCTCAAATGGA 58.259 50.000 0.00 0.00 0.00 3.41
2642 4994 2.278245 TGTCCCTCACCTCAAATGGAT 58.722 47.619 0.00 0.00 0.00 3.41
2643 4995 2.025981 TGTCCCTCACCTCAAATGGATG 60.026 50.000 0.00 0.00 0.00 3.51
2644 4996 2.025887 GTCCCTCACCTCAAATGGATGT 60.026 50.000 0.00 0.00 0.00 3.06
2645 4997 3.199946 GTCCCTCACCTCAAATGGATGTA 59.800 47.826 0.00 0.00 0.00 2.29
2646 4998 4.047166 TCCCTCACCTCAAATGGATGTAT 58.953 43.478 0.00 0.00 0.00 2.29
2647 4999 4.103153 TCCCTCACCTCAAATGGATGTATC 59.897 45.833 0.00 0.00 0.00 2.24
2648 5000 4.103785 CCCTCACCTCAAATGGATGTATCT 59.896 45.833 0.00 0.00 0.00 1.98
2649 5001 5.307976 CCCTCACCTCAAATGGATGTATCTA 59.692 44.000 0.00 0.00 0.00 1.98
2650 5002 6.462500 CCTCACCTCAAATGGATGTATCTAG 58.538 44.000 0.00 0.00 0.00 2.43
2651 5003 5.858381 TCACCTCAAATGGATGTATCTAGC 58.142 41.667 0.00 0.00 0.00 3.42
2652 5004 5.366477 TCACCTCAAATGGATGTATCTAGCA 59.634 40.000 0.00 0.00 0.00 3.49
2653 5005 5.468072 CACCTCAAATGGATGTATCTAGCAC 59.532 44.000 0.00 0.00 0.00 4.40
2654 5006 5.367937 ACCTCAAATGGATGTATCTAGCACT 59.632 40.000 0.00 0.00 0.00 4.40
2655 5007 6.554982 ACCTCAAATGGATGTATCTAGCACTA 59.445 38.462 0.00 0.00 0.00 2.74
2656 5008 7.071196 ACCTCAAATGGATGTATCTAGCACTAA 59.929 37.037 0.00 0.00 0.00 2.24
2657 5009 7.386299 CCTCAAATGGATGTATCTAGCACTAAC 59.614 40.741 0.00 0.00 0.00 2.34
2658 5010 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
2659 5011 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
2660 5012 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
2661 5013 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
2662 5014 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
2663 5015 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
2675 5027 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
2676 5028 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
2677 5029 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
2678 5030 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
2679 5031 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
2680 5032 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
2681 5033 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
2682 5034 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
2683 5035 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
2684 5036 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
2685 5037 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
2686 5038 5.369404 TGCTAGATACATCCATTTGAGGGAA 59.631 40.000 0.00 0.00 38.09 3.97
2687 5039 6.126507 TGCTAGATACATCCATTTGAGGGAAA 60.127 38.462 0.00 0.00 38.09 3.13
2688 5040 6.772716 GCTAGATACATCCATTTGAGGGAAAA 59.227 38.462 0.00 0.00 38.09 2.29
2689 5041 7.040823 GCTAGATACATCCATTTGAGGGAAAAG 60.041 40.741 0.00 0.00 38.09 2.27
2690 5042 5.595952 AGATACATCCATTTGAGGGAAAAGC 59.404 40.000 0.00 0.00 38.09 3.51
2691 5043 3.782992 ACATCCATTTGAGGGAAAAGCT 58.217 40.909 0.00 0.00 38.09 3.74
2692 5044 4.162651 ACATCCATTTGAGGGAAAAGCTT 58.837 39.130 0.00 0.00 38.09 3.74
2693 5045 4.594491 ACATCCATTTGAGGGAAAAGCTTT 59.406 37.500 5.69 5.69 38.09 3.51
2694 5046 5.072193 ACATCCATTTGAGGGAAAAGCTTTT 59.928 36.000 24.08 24.08 38.09 2.27
2695 5047 5.628797 TCCATTTGAGGGAAAAGCTTTTT 57.371 34.783 24.58 10.01 0.00 1.94
2696 5048 5.610398 TCCATTTGAGGGAAAAGCTTTTTC 58.390 37.500 24.58 22.39 0.00 2.29
2697 5049 4.448732 CCATTTGAGGGAAAAGCTTTTTCG 59.551 41.667 24.58 8.66 0.00 3.46
2698 5050 4.729227 TTTGAGGGAAAAGCTTTTTCGT 57.271 36.364 24.58 23.37 0.00 3.85
2699 5051 5.838531 TTTGAGGGAAAAGCTTTTTCGTA 57.161 34.783 24.58 8.40 0.00 3.43
2700 5052 5.432885 TTGAGGGAAAAGCTTTTTCGTAG 57.567 39.130 24.58 0.00 0.00 3.51
2701 5053 4.457466 TGAGGGAAAAGCTTTTTCGTAGT 58.543 39.130 24.58 8.97 0.00 2.73
2702 5054 4.274950 TGAGGGAAAAGCTTTTTCGTAGTG 59.725 41.667 24.58 0.00 0.00 2.74
2703 5055 3.004419 AGGGAAAAGCTTTTTCGTAGTGC 59.996 43.478 24.58 9.46 0.00 4.40
2704 5056 3.004419 GGGAAAAGCTTTTTCGTAGTGCT 59.996 43.478 24.58 0.00 35.30 4.40
2705 5057 4.214758 GGGAAAAGCTTTTTCGTAGTGCTA 59.785 41.667 24.58 0.00 33.28 3.49
2706 5058 5.383130 GGAAAAGCTTTTTCGTAGTGCTAG 58.617 41.667 24.58 0.00 33.28 3.42
2707 5059 5.178809 GGAAAAGCTTTTTCGTAGTGCTAGA 59.821 40.000 24.58 0.00 33.28 2.43
2708 5060 6.128254 GGAAAAGCTTTTTCGTAGTGCTAGAT 60.128 38.462 24.58 0.00 33.28 1.98
2709 5061 7.064253 GGAAAAGCTTTTTCGTAGTGCTAGATA 59.936 37.037 24.58 0.00 33.28 1.98
2710 5062 6.889019 AAGCTTTTTCGTAGTGCTAGATAC 57.111 37.500 0.00 0.00 33.28 2.24
2711 5063 5.962433 AGCTTTTTCGTAGTGCTAGATACA 58.038 37.500 0.00 0.00 31.71 2.29
2712 5064 6.574350 AGCTTTTTCGTAGTGCTAGATACAT 58.426 36.000 0.00 0.00 31.71 2.29
2713 5065 6.697892 AGCTTTTTCGTAGTGCTAGATACATC 59.302 38.462 0.00 0.00 31.71 3.06
2714 5066 6.074249 GCTTTTTCGTAGTGCTAGATACATCC 60.074 42.308 0.00 0.00 0.00 3.51
2715 5067 6.459670 TTTTCGTAGTGCTAGATACATCCA 57.540 37.500 0.00 0.00 0.00 3.41
2716 5068 6.650427 TTTCGTAGTGCTAGATACATCCAT 57.350 37.500 0.00 0.00 0.00 3.41
2717 5069 6.650427 TTCGTAGTGCTAGATACATCCATT 57.350 37.500 0.00 0.00 0.00 3.16
2718 5070 6.650427 TCGTAGTGCTAGATACATCCATTT 57.350 37.500 0.00 0.00 0.00 2.32
2719 5071 6.447162 TCGTAGTGCTAGATACATCCATTTG 58.553 40.000 0.00 0.00 0.00 2.32
2720 5072 6.264518 TCGTAGTGCTAGATACATCCATTTGA 59.735 38.462 0.00 0.00 0.00 2.69
2721 5073 6.584184 CGTAGTGCTAGATACATCCATTTGAG 59.416 42.308 0.00 0.00 0.00 3.02
2722 5074 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
2723 5075 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
2724 5076 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
2725 5077 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
2726 5078 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
2727 5079 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
2728 5080 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
2729 5081 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
2730 5082 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
2731 5083 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
2732 5084 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
2733 5085 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
2734 5086 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
2735 5087 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
2736 5088 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
2737 5089 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
2738 5090 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
2739 5091 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
2740 5092 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
2741 5093 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
2742 5094 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
2743 5095 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
2744 5096 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
2745 5097 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
2746 5098 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
2747 5099 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
2748 5100 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
2749 5101 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
2864 5220 6.751514 AGTGAGTAATCTGACTCTGTACAG 57.248 41.667 17.17 17.17 45.21 2.74
3141 5497 8.912787 TCAGAACAAATTATCTCTACGAAGAC 57.087 34.615 0.00 0.00 0.00 3.01
3150 5506 2.746362 TCTCTACGAAGACGGGAAACTC 59.254 50.000 0.00 0.00 44.46 3.01
3219 5575 5.451937 CGTCATTTCAGCTATTCAGAGGGTA 60.452 44.000 0.00 0.00 0.00 3.69
3222 5578 7.172361 GTCATTTCAGCTATTCAGAGGGTATTC 59.828 40.741 0.00 0.00 0.00 1.75
3386 5742 3.189287 GGAACAGCAATGACCAGTACAAG 59.811 47.826 0.00 0.00 0.00 3.16
3423 5779 0.036010 ATGTCCAGGTTGAGGAAGCG 60.036 55.000 0.00 0.00 36.80 4.68
3725 6081 9.088987 TCTTTTCCTTCTTTTTACTATGCCAAT 57.911 29.630 0.00 0.00 0.00 3.16
3726 6082 9.710900 CTTTTCCTTCTTTTTACTATGCCAATT 57.289 29.630 0.00 0.00 0.00 2.32
3728 6084 9.487790 TTTCCTTCTTTTTACTATGCCAATTTG 57.512 29.630 0.00 0.00 0.00 2.32
3729 6085 7.096551 TCCTTCTTTTTACTATGCCAATTTGC 58.903 34.615 0.00 0.00 0.00 3.68
3730 6086 6.313658 CCTTCTTTTTACTATGCCAATTTGCC 59.686 38.462 0.00 0.00 0.00 4.52
3731 6087 6.352016 TCTTTTTACTATGCCAATTTGCCA 57.648 33.333 0.00 0.00 0.00 4.92
3732 6088 6.763355 TCTTTTTACTATGCCAATTTGCCAA 58.237 32.000 0.00 0.00 0.00 4.52
3751 6107 4.279420 GCCAAAGTCAAACCTCATTTCTCT 59.721 41.667 0.00 0.00 0.00 3.10
3826 6399 5.261216 TGACCTGTACACATGATCACTAGA 58.739 41.667 0.00 0.00 0.00 2.43
3827 6400 5.358160 TGACCTGTACACATGATCACTAGAG 59.642 44.000 0.00 0.00 0.00 2.43
3857 6430 8.095792 TGTATGTGGAAAGTTTACGAAGGATAA 58.904 33.333 0.00 0.00 0.00 1.75
3882 6455 9.588096 AAAACCAGAAAATCTACTTACTCCAAT 57.412 29.630 0.00 0.00 0.00 3.16
3952 6525 6.384224 TGTTCAAACATCAATTCTGATCAGC 58.616 36.000 18.36 0.00 40.49 4.26
3981 6554 9.319143 GCATATTAGCTATACAATAGGTCAAGG 57.681 37.037 0.00 0.00 0.00 3.61
4194 6768 4.821805 ACATCACTACCAACAGAAACTTGG 59.178 41.667 0.00 0.00 43.49 3.61
4344 6918 6.837992 ACAATGAAGATATACACGCGTTTTT 58.162 32.000 10.22 0.00 0.00 1.94
4571 7145 2.498481 ACCACATTCATTTGGAGGCATG 59.502 45.455 0.00 0.00 36.28 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.385751 TCGGAGCGCAGGATTCTAAG 59.614 55.000 11.47 0.00 0.00 2.18
20 21 1.884926 CCTTCGGAGCGCAGGATTC 60.885 63.158 11.47 0.00 42.47 2.52
31 32 0.976073 CACCTTAGGGCTCCTTCGGA 60.976 60.000 2.32 0.00 34.61 4.55
144 145 5.073428 AGGATTAGTGACGCTATCTGATCA 58.927 41.667 0.00 0.00 0.00 2.92
148 149 3.823873 AGGAGGATTAGTGACGCTATCTG 59.176 47.826 0.00 0.00 0.00 2.90
149 150 4.076394 GAGGAGGATTAGTGACGCTATCT 58.924 47.826 0.00 0.00 0.00 1.98
150 151 4.076394 AGAGGAGGATTAGTGACGCTATC 58.924 47.826 0.00 0.00 0.00 2.08
151 152 4.076394 GAGAGGAGGATTAGTGACGCTAT 58.924 47.826 0.00 0.00 0.00 2.97
153 154 2.303175 GAGAGGAGGATTAGTGACGCT 58.697 52.381 0.00 0.00 0.00 5.07
154 155 1.002251 CGAGAGGAGGATTAGTGACGC 60.002 57.143 0.00 0.00 0.00 5.19
156 157 3.254657 CCATCGAGAGGAGGATTAGTGAC 59.745 52.174 0.47 0.00 0.00 3.67
157 158 3.117474 ACCATCGAGAGGAGGATTAGTGA 60.117 47.826 13.15 0.00 0.00 3.41
158 159 3.226777 ACCATCGAGAGGAGGATTAGTG 58.773 50.000 13.15 0.00 0.00 2.74
159 160 3.492337 GACCATCGAGAGGAGGATTAGT 58.508 50.000 13.15 0.00 0.00 2.24
201 202 3.394836 GAGCTTCCCTGGCCGACT 61.395 66.667 0.00 0.00 0.00 4.18
263 265 1.154035 GCAACGGTATGTGCTTGCC 60.154 57.895 0.00 0.00 34.21 4.52
329 331 0.254178 ATTCATGGCTCCGCTCAAGT 59.746 50.000 0.00 0.00 0.00 3.16
346 348 2.168496 TCGAAGAGGACGGTTGAGATT 58.832 47.619 0.00 0.00 0.00 2.40
362 364 3.067106 GTCTCAAGCTGTTGGATTCGAA 58.933 45.455 0.00 0.00 34.09 3.71
378 380 1.691196 CTTGCCTTTGGTTGGTCTCA 58.309 50.000 0.00 0.00 0.00 3.27
379 381 0.961753 CCTTGCCTTTGGTTGGTCTC 59.038 55.000 0.00 0.00 0.00 3.36
388 390 3.447742 GTTGAACAGTTCCTTGCCTTTG 58.552 45.455 10.93 0.00 0.00 2.77
392 394 0.317854 GCGTTGAACAGTTCCTTGCC 60.318 55.000 10.93 0.00 0.00 4.52
436 438 5.901853 AGACCTATTCTCACATGATCTCCAA 59.098 40.000 0.00 0.00 0.00 3.53
441 443 9.474920 CTTTTCTAGACCTATTCTCACATGATC 57.525 37.037 0.00 0.00 35.55 2.92
452 454 4.473922 GGTGGGGACTTTTCTAGACCTATT 59.526 45.833 0.00 0.00 38.55 1.73
453 455 4.038633 GGTGGGGACTTTTCTAGACCTAT 58.961 47.826 0.00 0.00 38.55 2.57
457 459 1.622312 ACGGTGGGGACTTTTCTAGAC 59.378 52.381 0.00 0.00 0.00 2.59
462 464 1.271163 TGATGACGGTGGGGACTTTTC 60.271 52.381 0.00 0.00 0.00 2.29
476 478 2.479566 TCTGCCACTTCCTTGATGAC 57.520 50.000 0.00 0.00 0.00 3.06
500 502 7.500992 TGTGCTTTTATTGTTTTTGGGTGATA 58.499 30.769 0.00 0.00 0.00 2.15
511 513 4.141959 ACTGCCTGTTGTGCTTTTATTGTT 60.142 37.500 0.00 0.00 0.00 2.83
565 568 9.810545 TTGTTTTTCCCTTTACTGATTTACTTG 57.189 29.630 0.00 0.00 0.00 3.16
568 571 8.130469 TCGTTGTTTTTCCCTTTACTGATTTAC 58.870 33.333 0.00 0.00 0.00 2.01
569 572 8.223177 TCGTTGTTTTTCCCTTTACTGATTTA 57.777 30.769 0.00 0.00 0.00 1.40
571 574 6.702716 TCGTTGTTTTTCCCTTTACTGATT 57.297 33.333 0.00 0.00 0.00 2.57
592 595 1.792949 GGTATCAGCGGTTATGCTTCG 59.207 52.381 0.00 0.00 44.46 3.79
604 607 1.004440 GATGGGCCGAGGTATCAGC 60.004 63.158 0.00 0.00 0.00 4.26
606 609 0.832135 GGAGATGGGCCGAGGTATCA 60.832 60.000 0.00 0.00 0.00 2.15
607 610 0.832135 TGGAGATGGGCCGAGGTATC 60.832 60.000 0.00 0.00 0.00 2.24
608 611 0.399949 TTGGAGATGGGCCGAGGTAT 60.400 55.000 0.00 0.00 0.00 2.73
618 1969 0.179065 TGCTGCGATCTTGGAGATGG 60.179 55.000 0.00 0.00 34.53 3.51
790 3023 1.486726 AGGTTCCCCGCTCTTAATGAG 59.513 52.381 0.00 0.00 45.33 2.90
826 3088 2.756907 TCTTCTCCCAGGAATCAGAGG 58.243 52.381 0.00 0.00 0.00 3.69
829 3091 2.497675 TCGTTCTTCTCCCAGGAATCAG 59.502 50.000 0.00 0.00 0.00 2.90
840 3102 4.056050 TGTGGTAAGCTTTCGTTCTTCTC 58.944 43.478 3.20 0.00 0.00 2.87
852 3114 5.442391 TGTTTACTTCCTTTGTGGTAAGCT 58.558 37.500 0.00 0.00 37.07 3.74
853 3115 5.761165 TGTTTACTTCCTTTGTGGTAAGC 57.239 39.130 0.00 0.00 37.07 3.09
857 3119 6.183360 CGTACTTTGTTTACTTCCTTTGTGGT 60.183 38.462 0.00 0.00 37.07 4.16
888 3153 0.667487 CCGGTGCATCGCATAGGTAG 60.667 60.000 15.51 0.00 41.91 3.18
890 3155 2.108976 CCGGTGCATCGCATAGGT 59.891 61.111 15.51 0.00 41.91 3.08
891 3156 1.956170 GACCGGTGCATCGCATAGG 60.956 63.158 14.63 1.86 41.91 2.57
903 3168 1.908793 CTGGTGAGGACTGACCGGT 60.909 63.158 6.92 6.92 44.74 5.28
904 3169 2.973899 CTGGTGAGGACTGACCGG 59.026 66.667 0.00 0.00 44.74 5.28
905 3170 2.262915 GCTGGTGAGGACTGACCG 59.737 66.667 3.56 0.43 44.74 4.79
906 3171 1.768684 TTGGCTGGTGAGGACTGACC 61.769 60.000 0.66 0.66 39.35 4.02
907 3172 0.603975 GTTGGCTGGTGAGGACTGAC 60.604 60.000 0.00 0.00 0.00 3.51
908 3173 1.053835 TGTTGGCTGGTGAGGACTGA 61.054 55.000 0.00 0.00 0.00 3.41
910 3175 1.451936 GTGTTGGCTGGTGAGGACT 59.548 57.895 0.00 0.00 0.00 3.85
911 3176 1.600916 GGTGTTGGCTGGTGAGGAC 60.601 63.158 0.00 0.00 0.00 3.85
912 3177 2.075566 TGGTGTTGGCTGGTGAGGA 61.076 57.895 0.00 0.00 0.00 3.71
915 3180 1.453015 GTGTGGTGTTGGCTGGTGA 60.453 57.895 0.00 0.00 0.00 4.02
916 3181 2.489275 GGTGTGGTGTTGGCTGGTG 61.489 63.158 0.00 0.00 0.00 4.17
917 3182 2.123897 GGTGTGGTGTTGGCTGGT 60.124 61.111 0.00 0.00 0.00 4.00
920 3185 3.103213 AGGGGTGTGGTGTTGGCT 61.103 61.111 0.00 0.00 0.00 4.75
921 3186 2.597510 GAGGGGTGTGGTGTTGGC 60.598 66.667 0.00 0.00 0.00 4.52
922 3187 2.006805 AAGGAGGGGTGTGGTGTTGG 62.007 60.000 0.00 0.00 0.00 3.77
923 3188 0.537371 GAAGGAGGGGTGTGGTGTTG 60.537 60.000 0.00 0.00 0.00 3.33
924 3189 0.991355 TGAAGGAGGGGTGTGGTGTT 60.991 55.000 0.00 0.00 0.00 3.32
925 3190 0.772124 ATGAAGGAGGGGTGTGGTGT 60.772 55.000 0.00 0.00 0.00 4.16
926 3191 1.285280 TATGAAGGAGGGGTGTGGTG 58.715 55.000 0.00 0.00 0.00 4.17
927 3192 1.846439 CATATGAAGGAGGGGTGTGGT 59.154 52.381 0.00 0.00 0.00 4.16
928 3193 2.105477 CTCATATGAAGGAGGGGTGTGG 59.895 54.545 6.90 0.00 29.74 4.17
929 3194 3.041211 TCTCATATGAAGGAGGGGTGTG 58.959 50.000 6.90 0.00 34.26 3.82
935 3200 4.164988 ACAAACCCTCTCATATGAAGGAGG 59.835 45.833 24.59 24.59 43.42 4.30
936 3201 5.104776 TCACAAACCCTCTCATATGAAGGAG 60.105 44.000 24.22 19.07 34.79 3.69
941 3206 5.338381 GGAAGTCACAAACCCTCTCATATGA 60.338 44.000 5.07 5.07 0.00 2.15
949 3214 4.202326 TGAACTAGGAAGTCACAAACCCTC 60.202 45.833 0.00 0.00 33.75 4.30
954 3219 6.929049 CACTGTATGAACTAGGAAGTCACAAA 59.071 38.462 0.00 0.00 33.75 2.83
965 3230 4.268644 CGGTTGCATCACTGTATGAACTAG 59.731 45.833 0.00 0.00 41.93 2.57
988 3253 2.421529 CCTTGGCCATTGGTAGGTCTAC 60.422 54.545 6.09 0.00 35.40 2.59
1016 3281 1.211457 CATGGAGGTTTGGAGGAGGAG 59.789 57.143 0.00 0.00 0.00 3.69
1029 3294 0.261402 TGGGGTTTATGCCATGGAGG 59.739 55.000 18.40 0.00 41.84 4.30
1119 3384 5.071788 AGGATAATATGCCGAGGAAACAAGA 59.928 40.000 0.00 0.00 0.00 3.02
1145 3410 2.426842 AGAGCCATAGAAAACCTGCC 57.573 50.000 0.00 0.00 0.00 4.85
1162 3427 6.830838 TGAGAATTATGAGTCAGCTCTGTAGA 59.169 38.462 0.00 0.00 42.13 2.59
1166 3431 6.514063 TGATGAGAATTATGAGTCAGCTCTG 58.486 40.000 0.00 0.00 42.13 3.35
1172 3437 5.737349 GCCGTCTGATGAGAATTATGAGTCA 60.737 44.000 0.00 0.00 0.00 3.41
1173 3438 4.683781 GCCGTCTGATGAGAATTATGAGTC 59.316 45.833 0.00 0.00 0.00 3.36
1174 3439 4.502259 GGCCGTCTGATGAGAATTATGAGT 60.502 45.833 0.00 0.00 0.00 3.41
1238 3503 2.852449 TGCGACAAGTAATTTGGGACA 58.148 42.857 0.00 0.00 41.25 4.02
1244 3509 8.303876 ACTATCCATTTTTGCGACAAGTAATTT 58.696 29.630 0.00 0.00 0.00 1.82
1264 3529 2.230750 CCTCCGTCCCGAATTACTATCC 59.769 54.545 0.00 0.00 0.00 2.59
1265 3530 2.230750 CCCTCCGTCCCGAATTACTATC 59.769 54.545 0.00 0.00 0.00 2.08
1266 3531 2.158415 TCCCTCCGTCCCGAATTACTAT 60.158 50.000 0.00 0.00 0.00 2.12
1302 3616 6.318648 ACTGACGGCATTACATGAAACATAAT 59.681 34.615 0.00 0.00 0.00 1.28
1319 3633 3.486875 GGCACATAAATGTAACTGACGGC 60.487 47.826 0.00 0.00 39.39 5.68
1398 3712 8.162085 ACATTGAGCTGGTATCTTATGATTCAT 58.838 33.333 4.28 4.28 34.32 2.57
1458 3772 4.615912 GCTTGGTAATCATGTCACCACAAC 60.616 45.833 13.11 5.09 41.95 3.32
1461 3775 2.423538 GGCTTGGTAATCATGTCACCAC 59.576 50.000 13.11 5.66 41.95 4.16
1462 3776 2.308570 AGGCTTGGTAATCATGTCACCA 59.691 45.455 10.47 10.47 40.55 4.17
1463 3777 2.684881 CAGGCTTGGTAATCATGTCACC 59.315 50.000 0.00 0.00 0.00 4.02
1516 3832 4.439153 CCATGAAATACGCTGCAACTGATT 60.439 41.667 0.00 0.00 0.00 2.57
1623 3939 9.290988 TGCATAAAAGGTCTTTATGTCTTAACA 57.709 29.630 15.15 4.82 41.80 2.41
1626 3942 8.956426 CCTTGCATAAAAGGTCTTTATGTCTTA 58.044 33.333 15.15 2.40 41.65 2.10
1629 3945 7.336931 TCTCCTTGCATAAAAGGTCTTTATGTC 59.663 37.037 15.15 9.99 45.94 3.06
1636 3952 3.589288 AGGTCTCCTTGCATAAAAGGTCT 59.411 43.478 2.14 0.00 45.94 3.85
1637 3953 3.956744 AGGTCTCCTTGCATAAAAGGTC 58.043 45.455 2.14 0.00 45.94 3.85
1639 3955 5.473039 CAAAAGGTCTCCTTGCATAAAAGG 58.527 41.667 1.62 0.00 43.92 3.11
1640 3956 4.925646 GCAAAAGGTCTCCTTGCATAAAAG 59.074 41.667 1.62 0.00 43.92 2.27
1641 3957 4.262420 GGCAAAAGGTCTCCTTGCATAAAA 60.262 41.667 12.51 0.00 43.92 1.52
1642 3958 3.258123 GGCAAAAGGTCTCCTTGCATAAA 59.742 43.478 12.51 0.00 43.92 1.40
1643 3959 2.825532 GGCAAAAGGTCTCCTTGCATAA 59.174 45.455 12.51 0.00 43.92 1.90
1644 3960 2.041620 AGGCAAAAGGTCTCCTTGCATA 59.958 45.455 12.51 0.00 43.92 3.14
1645 3961 1.203100 AGGCAAAAGGTCTCCTTGCAT 60.203 47.619 12.51 4.79 43.92 3.96
1647 3963 0.884514 GAGGCAAAAGGTCTCCTTGC 59.115 55.000 1.62 3.22 43.92 4.01
1672 4008 5.071788 ACTGTGACTCTTTGAAGGGTTGATA 59.928 40.000 0.00 0.00 40.57 2.15
1704 4040 9.688091 GAGGTATCCTCTACTCATATGACATTA 57.312 37.037 0.00 0.00 46.41 1.90
1728 4065 6.862090 GCTTCATACTATTTGTACCCTACGAG 59.138 42.308 0.00 0.00 33.45 4.18
1730 4067 6.420008 GTGCTTCATACTATTTGTACCCTACG 59.580 42.308 0.00 0.00 33.45 3.51
1738 4083 6.207417 AGTTTGCTGTGCTTCATACTATTTGT 59.793 34.615 0.00 0.00 0.00 2.83
1743 4088 6.262049 TGAAAAGTTTGCTGTGCTTCATACTA 59.738 34.615 0.00 0.00 0.00 1.82
1761 4106 9.003658 CACTATGAATTAGTTGGAGTGAAAAGT 57.996 33.333 0.00 0.00 39.19 2.66
1768 4113 8.041323 ACGAAATCACTATGAATTAGTTGGAGT 58.959 33.333 0.00 0.00 39.19 3.85
1794 4139 5.713792 TGTCTTTGTGACCTGAAAAACAA 57.286 34.783 0.00 0.00 44.75 2.83
1810 4155 6.820656 AGATCGCAGTCTATTTCATTGTCTTT 59.179 34.615 0.00 0.00 0.00 2.52
1831 4176 2.100252 CCCATGTGCCATTGAACAGATC 59.900 50.000 0.00 0.00 0.00 2.75
1920 4265 4.282957 TCCATTTGCTTTCCATACTTTGCA 59.717 37.500 0.00 0.00 0.00 4.08
1971 4316 0.106519 ACCTTGCCATATCACAGCCC 60.107 55.000 0.00 0.00 0.00 5.19
2040 4385 1.851304 GTCCAATTGAATCCCCAGCA 58.149 50.000 7.12 0.00 0.00 4.41
2043 4388 0.995803 TCCGTCCAATTGAATCCCCA 59.004 50.000 7.12 0.00 0.00 4.96
2123 4468 7.042523 GGGCATTGTTATTTTTCATAGCATGTC 60.043 37.037 0.00 0.00 0.00 3.06
2136 4481 9.365906 TGATAAGTGATATGGGCATTGTTATTT 57.634 29.630 0.00 0.00 0.00 1.40
2141 4486 5.072741 GGTGATAAGTGATATGGGCATTGT 58.927 41.667 0.00 0.00 0.00 2.71
2255 4600 0.471211 TCCCGTCCCTCTGTGTTCTT 60.471 55.000 0.00 0.00 0.00 2.52
2256 4601 0.471211 TTCCCGTCCCTCTGTGTTCT 60.471 55.000 0.00 0.00 0.00 3.01
2257 4602 0.037232 CTTCCCGTCCCTCTGTGTTC 60.037 60.000 0.00 0.00 0.00 3.18
2258 4603 0.763223 ACTTCCCGTCCCTCTGTGTT 60.763 55.000 0.00 0.00 0.00 3.32
2271 4616 2.826128 GGGAACATTTCTTGGACTTCCC 59.174 50.000 0.00 0.00 39.59 3.97
2505 4850 5.119588 CGTACTGAATGTTACACGGTTTCAT 59.880 40.000 0.45 0.00 0.00 2.57
2535 4880 2.808906 AACCCCTGAAAGTATGGAGC 57.191 50.000 0.00 0.00 0.00 4.70
2549 4894 6.602009 ACTCAATAACTGTAGCATAAAACCCC 59.398 38.462 0.00 0.00 0.00 4.95
2578 4923 9.413734 GGAGTATTAAGGTAGACTAAGTGGTTA 57.586 37.037 0.00 0.00 0.00 2.85
2601 4953 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
2602 4954 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
2603 4955 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
2604 4956 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
2605 4957 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
2606 4958 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
2607 4959 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
2608 4960 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
2609 4961 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
2610 4962 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
2611 4963 1.266989 GTGAGGGACAAGCTTTTTCGG 59.733 52.381 0.00 0.00 0.00 4.30
2612 4964 1.266989 GGTGAGGGACAAGCTTTTTCG 59.733 52.381 0.00 0.00 0.00 3.46
2613 4965 2.554462 GAGGTGAGGGACAAGCTTTTTC 59.446 50.000 0.00 0.00 0.00 2.29
2614 4966 2.091885 TGAGGTGAGGGACAAGCTTTTT 60.092 45.455 0.00 0.00 0.00 1.94
2615 4967 1.494721 TGAGGTGAGGGACAAGCTTTT 59.505 47.619 0.00 0.00 0.00 2.27
2616 4968 1.140312 TGAGGTGAGGGACAAGCTTT 58.860 50.000 0.00 0.00 0.00 3.51
2617 4969 1.140312 TTGAGGTGAGGGACAAGCTT 58.860 50.000 0.00 0.00 0.00 3.74
2618 4970 1.140312 TTTGAGGTGAGGGACAAGCT 58.860 50.000 0.00 0.00 0.00 3.74
2619 4971 1.815003 CATTTGAGGTGAGGGACAAGC 59.185 52.381 0.00 0.00 0.00 4.01
2620 4972 2.040278 TCCATTTGAGGTGAGGGACAAG 59.960 50.000 0.00 0.00 0.00 3.16
2621 4973 2.061848 TCCATTTGAGGTGAGGGACAA 58.938 47.619 0.00 0.00 0.00 3.18
2622 4974 1.741028 TCCATTTGAGGTGAGGGACA 58.259 50.000 0.00 0.00 0.00 4.02
2623 4975 2.025887 ACATCCATTTGAGGTGAGGGAC 60.026 50.000 0.00 0.00 36.45 4.46
2624 4976 2.278245 ACATCCATTTGAGGTGAGGGA 58.722 47.619 0.00 0.00 36.45 4.20
2625 4977 2.814805 ACATCCATTTGAGGTGAGGG 57.185 50.000 0.00 0.00 36.45 4.30
2626 4978 5.301835 AGATACATCCATTTGAGGTGAGG 57.698 43.478 0.00 0.00 38.68 3.86
2627 4979 5.931146 GCTAGATACATCCATTTGAGGTGAG 59.069 44.000 0.00 0.00 38.68 3.51
2628 4980 5.366477 TGCTAGATACATCCATTTGAGGTGA 59.634 40.000 0.00 0.00 38.68 4.02
2629 4981 5.468072 GTGCTAGATACATCCATTTGAGGTG 59.532 44.000 0.00 0.00 38.68 4.00
2630 4982 5.367937 AGTGCTAGATACATCCATTTGAGGT 59.632 40.000 0.00 0.00 41.66 3.85
2631 4983 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
2632 4984 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
2633 4985 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
2634 4986 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
2635 4987 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
2636 4988 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
2637 4989 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
2638 4990 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
2639 4991 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
2651 5003 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
2652 5004 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
2653 5005 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
2654 5006 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
2655 5007 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
2656 5008 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
2657 5009 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
2658 5010 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
2659 5011 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
2660 5012 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
2661 5013 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
2662 5014 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
2663 5015 5.489792 TCCCTCAAATGGATGTATCTAGC 57.510 43.478 0.00 0.00 0.00 3.42
2664 5016 7.040823 GCTTTTCCCTCAAATGGATGTATCTAG 60.041 40.741 0.00 0.00 0.00 2.43
2665 5017 6.772716 GCTTTTCCCTCAAATGGATGTATCTA 59.227 38.462 0.00 0.00 0.00 1.98
2666 5018 5.595952 GCTTTTCCCTCAAATGGATGTATCT 59.404 40.000 0.00 0.00 0.00 1.98
2667 5019 5.595952 AGCTTTTCCCTCAAATGGATGTATC 59.404 40.000 0.00 0.00 0.00 2.24
2668 5020 5.522641 AGCTTTTCCCTCAAATGGATGTAT 58.477 37.500 0.00 0.00 0.00 2.29
2669 5021 4.934356 AGCTTTTCCCTCAAATGGATGTA 58.066 39.130 0.00 0.00 0.00 2.29
2670 5022 3.782992 AGCTTTTCCCTCAAATGGATGT 58.217 40.909 0.00 0.00 0.00 3.06
2671 5023 4.813750 AAGCTTTTCCCTCAAATGGATG 57.186 40.909 0.00 0.00 0.00 3.51
2672 5024 5.830799 AAAAGCTTTTCCCTCAAATGGAT 57.169 34.783 18.74 0.00 0.00 3.41
2673 5025 5.610398 GAAAAAGCTTTTCCCTCAAATGGA 58.390 37.500 24.04 0.00 0.00 3.41
2674 5026 4.448732 CGAAAAAGCTTTTCCCTCAAATGG 59.551 41.667 24.04 4.46 0.00 3.16
2675 5027 5.049828 ACGAAAAAGCTTTTCCCTCAAATG 58.950 37.500 24.04 8.55 0.00 2.32
2676 5028 5.276461 ACGAAAAAGCTTTTCCCTCAAAT 57.724 34.783 24.04 6.55 0.00 2.32
2677 5029 4.729227 ACGAAAAAGCTTTTCCCTCAAA 57.271 36.364 24.04 0.00 0.00 2.69
2678 5030 4.885325 ACTACGAAAAAGCTTTTCCCTCAA 59.115 37.500 24.04 8.85 0.00 3.02
2679 5031 4.274950 CACTACGAAAAAGCTTTTCCCTCA 59.725 41.667 24.04 8.56 0.00 3.86
2680 5032 4.784329 CACTACGAAAAAGCTTTTCCCTC 58.216 43.478 24.04 16.63 0.00 4.30
2681 5033 3.004419 GCACTACGAAAAAGCTTTTCCCT 59.996 43.478 24.04 9.57 0.00 4.20
2682 5034 3.004419 AGCACTACGAAAAAGCTTTTCCC 59.996 43.478 24.04 17.07 29.98 3.97
2683 5035 4.224715 AGCACTACGAAAAAGCTTTTCC 57.775 40.909 24.04 11.72 29.98 3.13
2684 5036 6.224420 TCTAGCACTACGAAAAAGCTTTTC 57.776 37.500 24.04 15.80 36.80 2.29
2685 5037 6.803154 ATCTAGCACTACGAAAAAGCTTTT 57.197 33.333 18.74 18.74 36.80 2.27
2686 5038 6.872020 TGTATCTAGCACTACGAAAAAGCTTT 59.128 34.615 5.69 5.69 36.80 3.51
2687 5039 6.395629 TGTATCTAGCACTACGAAAAAGCTT 58.604 36.000 0.00 0.00 36.80 3.74
2688 5040 5.962433 TGTATCTAGCACTACGAAAAAGCT 58.038 37.500 0.00 0.00 39.22 3.74
2689 5041 6.074249 GGATGTATCTAGCACTACGAAAAAGC 60.074 42.308 0.00 0.00 0.00 3.51
2690 5042 6.978659 TGGATGTATCTAGCACTACGAAAAAG 59.021 38.462 0.00 0.00 0.00 2.27
2691 5043 6.869695 TGGATGTATCTAGCACTACGAAAAA 58.130 36.000 0.00 0.00 0.00 1.94
2692 5044 6.459670 TGGATGTATCTAGCACTACGAAAA 57.540 37.500 0.00 0.00 0.00 2.29
2693 5045 6.650427 ATGGATGTATCTAGCACTACGAAA 57.350 37.500 0.00 0.00 0.00 3.46
2694 5046 6.650427 AATGGATGTATCTAGCACTACGAA 57.350 37.500 0.00 0.00 0.00 3.85
2695 5047 6.264518 TCAAATGGATGTATCTAGCACTACGA 59.735 38.462 0.00 0.00 0.00 3.43
2696 5048 6.447162 TCAAATGGATGTATCTAGCACTACG 58.553 40.000 0.00 0.00 0.00 3.51
2697 5049 6.870965 CCTCAAATGGATGTATCTAGCACTAC 59.129 42.308 0.00 0.00 0.00 2.73
2698 5050 6.014242 CCCTCAAATGGATGTATCTAGCACTA 60.014 42.308 0.00 0.00 0.00 2.74
2699 5051 5.221803 CCCTCAAATGGATGTATCTAGCACT 60.222 44.000 0.00 0.00 0.00 4.40
2700 5052 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
2701 5053 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
2702 5054 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
2703 5055 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
2704 5056 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
2705 5057 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
2706 5058 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
2707 5059 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
2708 5060 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
2709 5061 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
2710 5062 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
2711 5063 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
2712 5064 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
2713 5065 4.309933 GAAAAAGCTTGTCCCTCAAATGG 58.690 43.478 0.00 0.00 35.48 3.16
2714 5066 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
2715 5067 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
2716 5068 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
2717 5069 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
2718 5070 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
2719 5071 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
2720 5072 1.605753 GTCCGAAAAAGCTTGTCCCT 58.394 50.000 0.00 0.00 0.00 4.20
2721 5073 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
2722 5074 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
2723 5075 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
2724 5076 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
2725 5077 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
2726 5078 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
2727 5079 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
2728 5080 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
2729 5081 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
2730 5082 1.547372 CTACTCCCTCCGTCCGAAAAA 59.453 52.381 0.00 0.00 0.00 1.94
2731 5083 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
2732 5084 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2733 5085 0.038744 AACTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
2734 5086 0.911769 TAACTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
2735 5087 1.403323 GTTAACTACTCCCTCCGTCCG 59.597 57.143 0.00 0.00 0.00 4.79
2736 5088 2.426381 CTGTTAACTACTCCCTCCGTCC 59.574 54.545 7.22 0.00 0.00 4.79
2737 5089 3.087781 ACTGTTAACTACTCCCTCCGTC 58.912 50.000 7.22 0.00 0.00 4.79
2738 5090 3.166560 ACTGTTAACTACTCCCTCCGT 57.833 47.619 7.22 0.00 0.00 4.69
2739 5091 4.012374 TGTACTGTTAACTACTCCCTCCG 58.988 47.826 7.22 0.00 0.00 4.63
2740 5092 5.259632 TCTGTACTGTTAACTACTCCCTCC 58.740 45.833 7.22 0.00 0.00 4.30
2741 5093 6.830873 TTCTGTACTGTTAACTACTCCCTC 57.169 41.667 7.22 0.00 0.00 4.30
2742 5094 7.234988 ACATTTCTGTACTGTTAACTACTCCCT 59.765 37.037 7.22 0.00 32.49 4.20
2743 5095 7.384477 ACATTTCTGTACTGTTAACTACTCCC 58.616 38.462 7.22 0.00 32.49 4.30
2864 5220 3.133003 TGGAGCTTCTACCTGCATTAGTC 59.867 47.826 0.00 0.00 0.00 2.59
3141 5497 0.953471 TGCAACCGATGAGTTTCCCG 60.953 55.000 0.00 0.00 0.00 5.14
3219 5575 3.961408 AGTTACTGATAGCCGTCCTGAAT 59.039 43.478 0.00 0.00 0.00 2.57
3222 5578 3.130516 TCAAGTTACTGATAGCCGTCCTG 59.869 47.826 0.00 0.00 0.00 3.86
3295 5651 1.464219 GCCATTTTCAAAATGTGCCGG 59.536 47.619 19.35 0.00 0.00 6.13
3386 5742 6.180472 TGGACATCTCTTATTTCCCTTTCAC 58.820 40.000 0.00 0.00 0.00 3.18
3423 5779 4.900635 TTTCTCCTTTTGTGCTCTGTTC 57.099 40.909 0.00 0.00 0.00 3.18
3650 6006 3.349927 CAGAAGTTCCTGCATCATTGGA 58.650 45.455 0.00 0.00 0.00 3.53
3725 6081 4.751767 AATGAGGTTTGACTTTGGCAAA 57.248 36.364 12.79 12.79 33.22 3.68
3726 6082 4.405358 AGAAATGAGGTTTGACTTTGGCAA 59.595 37.500 0.00 0.00 0.00 4.52
3727 6083 3.960102 AGAAATGAGGTTTGACTTTGGCA 59.040 39.130 0.00 0.00 0.00 4.92
3728 6084 4.279420 AGAGAAATGAGGTTTGACTTTGGC 59.721 41.667 0.00 0.00 0.00 4.52
3729 6085 5.300286 ACAGAGAAATGAGGTTTGACTTTGG 59.700 40.000 0.00 0.00 0.00 3.28
3730 6086 6.382869 ACAGAGAAATGAGGTTTGACTTTG 57.617 37.500 0.00 0.00 0.00 2.77
3731 6087 7.410120 AAACAGAGAAATGAGGTTTGACTTT 57.590 32.000 0.00 0.00 31.10 2.66
3732 6088 7.340487 AGAAAACAGAGAAATGAGGTTTGACTT 59.660 33.333 0.00 0.00 32.51 3.01
3751 6107 8.031864 TGAATCTAAAAACTGTTGCAGAAAACA 58.968 29.630 2.91 0.00 37.71 2.83
3826 6399 6.460781 TCGTAAACTTTCCACATACATGACT 58.539 36.000 0.00 0.00 0.00 3.41
3827 6400 6.715344 TCGTAAACTTTCCACATACATGAC 57.285 37.500 0.00 0.00 0.00 3.06
3903 6476 5.415077 TCGTAACTCTGGTTGTTTGGAAAAA 59.585 36.000 0.00 0.00 36.92 1.94
3908 6481 3.813166 ACATCGTAACTCTGGTTGTTTGG 59.187 43.478 0.00 0.00 36.92 3.28
3914 6487 5.120399 TGTTTGAACATCGTAACTCTGGTT 58.880 37.500 0.00 0.00 35.35 3.67
3952 6525 8.406297 TGACCTATTGTATAGCTAATATGCTCG 58.594 37.037 0.00 0.00 42.97 5.03
4194 6768 1.388547 TGATGCGCAAGGAATTACCC 58.611 50.000 17.11 0.00 45.01 3.69
4344 6918 2.040145 TCTGGTTGTCAAGATGGATGCA 59.960 45.455 0.00 0.00 0.00 3.96
4438 7012 7.654116 TGTTCGCGATATTGGATTCTATTGTTA 59.346 33.333 10.88 0.00 0.00 2.41
4542 7116 5.009631 TCCAAATGAATGTGGTACCTTGAG 58.990 41.667 14.36 1.76 36.23 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.