AutoCloner

Multiple sequence alignment - TraesCS2D01G327200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G327200	chr2D	100.000	2990	0	0	1	2990	420557490	420560479	0.000000e+00	5522.0
1	TraesCS2D01G327200	chr2D	84.497	845	110	15	11	846	201435304	201434472	0.000000e+00	815.0
2	TraesCS2D01G327200	chr2D	83.063	862	122	20	1	848	561246693	561245842	0.000000e+00	761.0
3	TraesCS2D01G327200	chr2D	87.193	570	60	7	304	863	420528793	420529359	1.170000e-178	636.0
4	TraesCS2D01G327200	chr2A	95.210	2025	76	8	972	2990	569366100	569364091	0.000000e+00	3182.0
5	TraesCS2D01G327200	chr2A	83.372	860	109	26	3	846	770678889	770679730	0.000000e+00	765.0
6	TraesCS2D01G327200	chr2A	83.140	860	111	29	3	846	770673280	770674121	0.000000e+00	754.0
7	TraesCS2D01G327200	chr2B	93.346	1578	74	17	867	2421	492975507	492977076	0.000000e+00	2303.0
8	TraesCS2D01G327200	chr2B	83.043	861	125	18	1	848	655704185	655703333	0.000000e+00	761.0
9	TraesCS2D01G327200	chr2B	81.871	855	123	24	1	846	261119598	261120429	0.000000e+00	691.0
10	TraesCS2D01G327200	chr2B	82.497	817	116	22	1	805	261124360	261125161	0.000000e+00	691.0
11	TraesCS2D01G327200	chr2B	88.033	610	35	15	2411	2990	492985144	492985745	0.000000e+00	688.0
12	TraesCS2D01G327200	chr2B	82.212	416	62	9	4	413	417444509	417444100	6.130000e-92	348.0
13	TraesCS2D01G327200	chr2B	97.297	37	0	1	2156	2192	492976767	492976732	8.950000e-06	62.1
14	TraesCS2D01G327200	chr1A	82.746	823	119	20	1	815	140304367	140303560	0.000000e+00	712.0
15	TraesCS2D01G327200	chr7D	84.672	548	68	12	304	846	254434628	254434092	1.580000e-147	532.0
16	TraesCS2D01G327200	chr7D	88.123	261	28	1	2733	2990	626294869	626294609	1.040000e-79	307.0
17	TraesCS2D01G327200	chr4A	83.725	553	78	12	304	848	214104716	214105264	2.060000e-141	512.0
18	TraesCS2D01G327200	chr4A	92.593	81	5	1	1869	1948	46577492	46577572	6.770000e-22	115.0
19	TraesCS2D01G327200	chr5B	83.755	554	74	13	304	848	33735204	33735750	7.390000e-141	510.0
20	TraesCS2D01G327200	chr3D	88.189	254	27	1	2733	2983	2384900	2385153	1.740000e-77	300.0
21	TraesCS2D01G327200	chrUn	87.795	254	28	1	2734	2984	304964450	304964703	8.110000e-76	294.0
22	TraesCS2D01G327200	chr6B	87.308	260	30	1	2734	2990	7915442	7915183	8.110000e-76	294.0
23	TraesCS2D01G327200	chr4B	87.308	260	30	1	2734	2990	259079223	259078964	8.110000e-76	294.0
24	TraesCS2D01G327200	chr4B	87.308	260	30	1	2734	2990	654022190	654021931	8.110000e-76	294.0
25	TraesCS2D01G327200	chr5A	87.698	252	28	1	2736	2984	423144628	423144879	1.050000e-74	291.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G327200	chr2D	420557490	420560479	2989	False	5522	5522	100.000	1	2990	1	chr2D.!!$F2	2989
1	TraesCS2D01G327200	chr2D	201434472	201435304	832	True	815	815	84.497	11	846	1	chr2D.!!$R1	835
2	TraesCS2D01G327200	chr2D	561245842	561246693	851	True	761	761	83.063	1	848	1	chr2D.!!$R2	847
3	TraesCS2D01G327200	chr2D	420528793	420529359	566	False	636	636	87.193	304	863	1	chr2D.!!$F1	559
4	TraesCS2D01G327200	chr2A	569364091	569366100	2009	True	3182	3182	95.210	972	2990	1	chr2A.!!$R1	2018
5	TraesCS2D01G327200	chr2A	770678889	770679730	841	False	765	765	83.372	3	846	1	chr2A.!!$F2	843
6	TraesCS2D01G327200	chr2A	770673280	770674121	841	False	754	754	83.140	3	846	1	chr2A.!!$F1	843
7	TraesCS2D01G327200	chr2B	492975507	492977076	1569	False	2303	2303	93.346	867	2421	1	chr2B.!!$F1	1554
8	TraesCS2D01G327200	chr2B	655703333	655704185	852	True	761	761	83.043	1	848	1	chr2B.!!$R3	847
9	TraesCS2D01G327200	chr2B	261119598	261125161	5563	False	691	691	82.184	1	846	2	chr2B.!!$F3	845
10	TraesCS2D01G327200	chr2B	492985144	492985745	601	False	688	688	88.033	2411	2990	1	chr2B.!!$F2	579
11	TraesCS2D01G327200	chr1A	140303560	140304367	807	True	712	712	82.746	1	815	1	chr1A.!!$R1	814
12	TraesCS2D01G327200	chr7D	254434092	254434628	536	True	532	532	84.672	304	846	1	chr7D.!!$R1	542
13	TraesCS2D01G327200	chr4A	214104716	214105264	548	False	512	512	83.725	304	848	1	chr4A.!!$F2	544
14	TraesCS2D01G327200	chr5B	33735204	33735750	546	False	510	510	83.755	304	848	1	chr5B.!!$F1	544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
877	904	0.108804	AACACCGTCATCGCTGTAGG	60.109	55.0	2.26	2.26	35.25	3.18	F
942	1511	0.247736	GCTCAGGACTCAACACCGAT	59.752	55.0	0.00	0.00	0.00	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1758	2843	1.521681	CTTTCCGGCGATCACCTCC	60.522	63.158	9.30	0.0	0.00	4.30	R
2125	3405	3.069443	AGCTCTGCCTAGCATAGAACTTC	59.931	47.826	9.75	0.0	42.77	3.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
60	61	4.825085	TGAAGATGGTTTAAAACGGAGCTT	59.175	37.500	0.00	0.00	0.00	3.74
81	85	8.409358	AGCTTGGAAATAGTTATGACAAGTTT	57.591	30.769	0.00	0.00	36.96	2.66
116	121	6.545666	TGTGTTGACACCAGATTAAAGAATGT	59.454	34.615	11.42	0.00	45.88	2.71
121	126	5.305585	ACACCAGATTAAAGAATGTCACGT	58.694	37.500	0.00	0.00	0.00	4.49
124	129	7.606456	ACACCAGATTAAAGAATGTCACGTAAT	59.394	33.333	0.00	0.00	0.00	1.89
153	158	9.881773	AATTAAGATGGCCTCTTATGGAAAATA	57.118	29.630	19.17	7.76	44.12	1.40
162	167	7.706607	GGCCTCTTATGGAAAATATTTCAACAC	59.293	37.037	0.10	0.00	0.00	3.32
163	168	8.250332	GCCTCTTATGGAAAATATTTCAACACA	58.750	33.333	0.10	0.00	0.00	3.72
262	267	3.706086	AGGCAAAACAAGGTCAGAAACAT	59.294	39.130	0.00	0.00	0.00	2.71
271	276	3.754965	AGGTCAGAAACATAAGCTGCAA	58.245	40.909	1.02	0.00	0.00	4.08
417	422	3.405170	CGAGTTGATCCGGAAAATTGG	57.595	47.619	9.01	0.58	0.00	3.16
422	427	4.020307	AGTTGATCCGGAAAATTGGCAAAT	60.020	37.500	9.01	0.00	0.00	2.32
497	502	4.577693	GTCCTTTTTCTTGTACGGGAAGTT	59.422	41.667	0.00	0.00	0.00	2.66
518	523	6.296026	AGTTCAGCCGCCTCATAAATAAATA	58.704	36.000	0.00	0.00	0.00	1.40
556	561	6.084939	CGATTAAACAACACACAATCGAACAG	59.915	38.462	8.84	0.00	46.68	3.16
563	568	5.947228	ACACACAATCGAACAGATCAATT	57.053	34.783	0.00	0.00	38.98	2.32
569	574	9.214957	ACACAATCGAACAGATCAATTTACTAA	57.785	29.630	0.00	0.00	38.98	2.24
636	648	5.381174	TTCTCGTTCTTCATCCGTTCTTA	57.619	39.130	0.00	0.00	0.00	2.10
652	664	2.200081	TCTTAATCTTGGAGGGCAGCT	58.800	47.619	0.00	0.00	0.00	4.24
711	725	4.891727	CCATAGCCGCCGCTCGTT	62.892	66.667	1.83	0.00	43.95	3.85
726	740	1.977685	CGTTTAGACGGGGTCCCTT	59.022	57.895	8.15	0.00	45.32	3.95
729	743	0.178897	TTTAGACGGGGTCCCTTCCA	60.179	55.000	8.15	0.00	35.25	3.53
760	777	3.257375	GGGTTTCGGGTTCTAAAAAGCAT	59.743	43.478	0.00	0.00	32.30	3.79
772	790	1.173043	AAAAGCATCCGCCGAATTGA	58.827	45.000	0.00	0.00	39.83	2.57
808	827	4.675976	TTCGGTTAAGTCTCCTTCAACA	57.324	40.909	0.00	0.00	31.89	3.33
829	848	0.940126	GAGCTACAATGCATCACCCG	59.060	55.000	0.00	0.00	34.99	5.28
830	849	0.464373	AGCTACAATGCATCACCCGG	60.464	55.000	0.00	0.00	34.99	5.73
831	850	2.024918	CTACAATGCATCACCCGGC	58.975	57.895	0.00	0.00	0.00	6.13
834	853	2.824041	AATGCATCACCCGGCGTC	60.824	61.111	6.01	0.00	0.00	5.19
835	854	3.620419	AATGCATCACCCGGCGTCA	62.620	57.895	6.01	0.00	0.00	4.35
836	855	3.620419	ATGCATCACCCGGCGTCAA	62.620	57.895	6.01	0.00	0.00	3.18
851	878	1.523934	CGTCAAAGGTACACGTGTTCC	59.476	52.381	30.65	30.65	35.94	3.62
863	890	4.134623	TGTTCCTGTGCGAACACC	57.865	55.556	0.00	0.00	45.49	4.16
864	891	1.885388	TGTTCCTGTGCGAACACCG	60.885	57.895	0.00	0.00	45.49	4.94
877	904	0.108804	AACACCGTCATCGCTGTAGG	60.109	55.000	2.26	2.26	35.25	3.18
926	969	1.970352	CTCCCAAGCCCTCTCTGCTC	61.970	65.000	0.00	0.00	38.34	4.26
929	972	1.221293	CAAGCCCTCTCTGCTCAGG	59.779	63.158	0.00	0.00	38.34	3.86
930	973	1.079987	AAGCCCTCTCTGCTCAGGA	59.920	57.895	0.00	0.00	38.34	3.86
942	1511	0.247736	GCTCAGGACTCAACACCGAT	59.752	55.000	0.00	0.00	0.00	4.18
943	1512	1.737363	GCTCAGGACTCAACACCGATC	60.737	57.143	0.00	0.00	0.00	3.69
985	1554	0.540597	AAGCCCCCTTCTTTCAGTGC	60.541	55.000	0.00	0.00	0.00	4.40
992	1561	3.077359	CCCTTCTTTCAGTGCGATTTCT	58.923	45.455	0.00	0.00	0.00	2.52
1065	1634	0.687757	CCCTTCGAGTCCTCCCATCA	60.688	60.000	0.00	0.00	0.00	3.07
1090	1659	4.640690	ACCGCCTCTCCACCACCT	62.641	66.667	0.00	0.00	0.00	4.00
1249	1818	4.130281	GTTTCTCCGCCGCGTTCG	62.130	66.667	12.58	8.30	0.00	3.95
1848	3080	0.118346	TTAAGGGGCTGGAGTGGAGA	59.882	55.000	0.00	0.00	0.00	3.71
2040	3273	3.517100	TGGGATCCTTCAGAGTTCAGAAG	59.483	47.826	12.58	7.16	38.66	2.85
2125	3405	4.033358	GTGCAAGGATGAGTAGTTCAATCG	59.967	45.833	0.00	0.00	39.77	3.34
2190	3472	6.079424	ACTCTCTCTGAACTTGTGTAAGAC	57.921	41.667	0.00	0.00	37.36	3.01
2247	3529	3.131396	GTGTGTCCTTTGTCGTTGAGAT	58.869	45.455	0.00	0.00	0.00	2.75
2248	3530	3.184581	GTGTGTCCTTTGTCGTTGAGATC	59.815	47.826	0.00	0.00	0.00	2.75
2249	3531	2.408704	GTGTCCTTTGTCGTTGAGATCG	59.591	50.000	0.00	0.00	0.00	3.69
2250	3532	1.993370	GTCCTTTGTCGTTGAGATCGG	59.007	52.381	0.00	0.00	0.00	4.18
2251	3533	1.890489	TCCTTTGTCGTTGAGATCGGA	59.110	47.619	0.00	0.00	0.00	4.55
2252	3534	2.094700	TCCTTTGTCGTTGAGATCGGAG	60.095	50.000	0.00	0.00	0.00	4.63
2253	3535	2.094700	CCTTTGTCGTTGAGATCGGAGA	60.095	50.000	0.00	0.00	45.75	3.71
2263	3552	6.039382	TCGTTGAGATCGGAGATCATTTCTAA	59.961	38.462	11.94	0.00	45.12	2.10
2275	3564	9.050601	GGAGATCATTTCTAATCCTTTGTACTG	57.949	37.037	0.00	0.00	33.74	2.74
2374	3663	5.066117	TGTTAATACTGAGTAGAGTGAGCGG	59.934	44.000	0.00	0.00	0.00	5.52
2489	3778	4.157656	GGTAGAACTGCCATTTGTTGCATA	59.842	41.667	4.17	0.00	36.79	3.14
2519	3808	8.532977	CCACAAACTTGGTCTTTATTTTATGG	57.467	34.615	0.00	0.00	0.00	2.74
2520	3809	8.364142	CCACAAACTTGGTCTTTATTTTATGGA	58.636	33.333	0.00	0.00	0.00	3.41
2521	3810	9.410556	CACAAACTTGGTCTTTATTTTATGGAG	57.589	33.333	0.00	0.00	0.00	3.86
2522	3811	9.143155	ACAAACTTGGTCTTTATTTTATGGAGT	57.857	29.630	0.00	0.00	0.00	3.85
2563	3852	3.305064	GCTTATGCCGAAAAGTTGGTCAA	60.305	43.478	0.00	0.00	0.00	3.18
2564	3853	4.618227	GCTTATGCCGAAAAGTTGGTCAAT	60.618	41.667	0.00	0.00	0.00	2.57
2781	5295	4.521130	TCGGCTATTATTGCTACTCCTG	57.479	45.455	0.00	0.00	0.00	3.86
2797	5311	6.920758	GCTACTCCTGTAGTACTTGATGATTG	59.079	42.308	0.00	0.00	45.84	2.67
2854	5495	5.917541	AAATGCAATTCAAAGAGCACTTG	57.082	34.783	0.00	0.00	40.14	3.16
2926	5801	5.170748	GCAGGTAAATCAATCAACCAAAGG	58.829	41.667	0.00	0.00	34.29	3.11

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
9	10	8.372877	TCCATCTTGATCTTCTTAAAGAGAGT	57.627	34.615	0.00	0.00	44.53	3.24
92	96	6.970484	ACATTCTTTAATCTGGTGTCAACAC	58.030	36.000	4.67	4.67	45.72	3.32
116	121	6.119536	AGGCCATCTTAATTGAATTACGTGA	58.880	36.000	5.01	0.00	0.00	4.35
162	167	1.653679	CGACGAGACGCACAACTTTTG	60.654	52.381	0.00	0.00	0.00	2.44
163	168	0.575390	CGACGAGACGCACAACTTTT	59.425	50.000	0.00	0.00	0.00	2.27
197	202	9.862149	ACCTCGGATTAGGACAATTTTTATATT	57.138	29.630	0.00	0.00	39.15	1.28
212	217	3.050619	GTTGCATACGACCTCGGATTAG	58.949	50.000	0.00	0.00	40.60	1.73
262	267	3.188460	GTCCGAAATGACTTTGCAGCTTA	59.812	43.478	0.00	0.00	32.39	3.09
271	276	3.181454	ACTTGGTCAGTCCGAAATGACTT	60.181	43.478	1.48	0.00	42.92	3.01
285	290	3.138304	CCGAGTCAAATCAACTTGGTCA	58.862	45.455	1.97	0.00	41.59	4.02
290	295	4.058817	GTCTCACCGAGTCAAATCAACTT	58.941	43.478	0.00	0.00	0.00	2.66
324	329	9.041354	ACTCTCTGTATCCTTCTGTAATTTTCT	57.959	33.333	0.00	0.00	0.00	2.52
417	422	4.511826	CCTAACTCGGACAGGAATATTTGC	59.488	45.833	0.00	0.00	0.00	3.68
422	427	4.891756	CCTAACCTAACTCGGACAGGAATA	59.108	45.833	0.00	0.00	33.30	1.75
478	483	4.035909	GCTGAACTTCCCGTACAAGAAAAA	59.964	41.667	0.00	0.00	0.00	1.94
497	502	6.530120	TCTTATTTATTTATGAGGCGGCTGA	58.470	36.000	19.63	9.11	0.00	4.26
524	529	0.791422	TGTTGTTTAATCGGCCGTCG	59.209	50.000	27.15	0.00	40.90	5.12
636	648	1.423161	GGATAGCTGCCCTCCAAGATT	59.577	52.381	11.93	0.00	0.00	2.40
652	664	1.137479	CGCCCTAAAACCTCGTGGATA	59.863	52.381	11.17	0.00	37.04	2.59
683	697	2.452064	GGCTATGGGCTGCCCTACA	61.452	63.158	35.80	18.79	45.70	2.74
711	725	0.616679	CTGGAAGGGACCCCGTCTAA	60.617	60.000	18.15	8.34	42.80	2.10
726	740	1.605453	GAAACCCCATACGCCTGGA	59.395	57.895	0.00	0.00	38.69	3.86
729	743	2.587889	CCGAAACCCCATACGCCT	59.412	61.111	0.00	0.00	0.00	5.52
760	777	2.813474	CGCAGTCAATTCGGCGGA	60.813	61.111	7.21	0.00	45.07	5.54
808	827	2.579873	GGGTGATGCATTGTAGCTCAT	58.420	47.619	0.00	0.00	34.99	2.90
829	848	0.877213	ACACGTGTACCTTTGACGCC	60.877	55.000	21.98	0.00	36.56	5.68
830	849	0.932399	AACACGTGTACCTTTGACGC	59.068	50.000	23.69	0.00	36.56	5.19
831	850	1.523934	GGAACACGTGTACCTTTGACG	59.476	52.381	23.69	1.54	39.03	4.35
834	853	2.286833	CACAGGAACACGTGTACCTTTG	59.713	50.000	23.69	17.27	32.55	2.77
835	854	2.557317	CACAGGAACACGTGTACCTTT	58.443	47.619	23.69	5.39	32.55	3.11
836	855	1.808891	GCACAGGAACACGTGTACCTT	60.809	52.381	23.69	10.63	35.51	3.50
863	890	0.248661	CCTGTCCTACAGCGATGACG	60.249	60.000	8.12	0.00	44.63	4.35
864	891	0.103208	CCCTGTCCTACAGCGATGAC	59.897	60.000	8.12	0.00	44.63	3.06
926	969	2.001812	CTGATCGGTGTTGAGTCCTG	57.998	55.000	0.00	0.00	0.00	3.86
929	972	1.337260	ACTGCTGATCGGTGTTGAGTC	60.337	52.381	2.89	0.00	31.81	3.36
930	973	0.681733	ACTGCTGATCGGTGTTGAGT	59.318	50.000	2.89	0.00	31.81	3.41
970	1539	1.826385	AATCGCACTGAAAGAAGGGG	58.174	50.000	0.00	0.00	37.43	4.79
985	1554	2.945668	GGGACATGGGAAAGAGAAATCG	59.054	50.000	0.00	0.00	0.00	3.34
992	1561	2.674754	GCCGGGACATGGGAAAGA	59.325	61.111	2.18	0.00	0.00	2.52
1015	1584	3.554692	GCGTCGCCGGAGATTGTG	61.555	66.667	12.23	3.27	33.68	3.33
1039	1608	0.114560	AGGACTCGAAGGGTTGAGGA	59.885	55.000	0.00	0.00	36.53	3.71
1090	1659	3.319198	GGTTGCCGGAGTGGAGGA	61.319	66.667	5.05	0.00	42.00	3.71
1758	2843	1.521681	CTTTCCGGCGATCACCTCC	60.522	63.158	9.30	0.00	0.00	4.30
1848	3080	4.822350	TCTTCCTCGTCGTCATCTTCATAT	59.178	41.667	0.00	0.00	0.00	1.78
2040	3273	4.513442	TGGTGTAGCATAATCCACACTTC	58.487	43.478	3.97	0.00	40.82	3.01
2125	3405	3.069443	AGCTCTGCCTAGCATAGAACTTC	59.931	47.826	9.75	0.00	42.77	3.01
2190	3472	3.220110	CAAGGGATCAGGATTGGTCATG	58.780	50.000	0.00	0.00	36.09	3.07
2247	3529	6.889198	ACAAAGGATTAGAAATGATCTCCGA	58.111	36.000	0.00	0.00	39.71	4.55
2248	3530	7.928706	AGTACAAAGGATTAGAAATGATCTCCG	59.071	37.037	0.00	0.00	39.71	4.63
2249	3531	9.050601	CAGTACAAAGGATTAGAAATGATCTCC	57.949	37.037	0.00	0.00	39.71	3.71
2250	3532	9.050601	CCAGTACAAAGGATTAGAAATGATCTC	57.949	37.037	0.00	0.00	39.71	2.75
2251	3533	8.552296	ACCAGTACAAAGGATTAGAAATGATCT	58.448	33.333	6.09	0.00	42.48	2.75
2252	3534	8.738645	ACCAGTACAAAGGATTAGAAATGATC	57.261	34.615	6.09	0.00	0.00	2.92
2253	3535	9.533831	AAACCAGTACAAAGGATTAGAAATGAT	57.466	29.630	6.09	0.00	0.00	2.45
2263	3552	9.321562	CGTATATAACAAACCAGTACAAAGGAT	57.678	33.333	6.09	0.00	0.00	3.24
2374	3663	6.971184	CAGTAAAGAAATGGATCATTCAGTGC	59.029	38.462	0.00	0.00	32.43	4.40
2417	3706	8.458573	AATCCAGTAAACATTGTTTCACTGTA	57.541	30.769	27.39	21.14	33.23	2.74
2430	3719	8.740123	TGAACTTGTAAGAAATCCAGTAAACA	57.260	30.769	0.00	0.00	0.00	2.83
2518	3807	5.111293	CCATTTGTGCCATCAAAATACTCC	58.889	41.667	3.65	0.00	40.05	3.85
2519	3808	4.567959	GCCATTTGTGCCATCAAAATACTC	59.432	41.667	3.65	0.00	40.05	2.59
2520	3809	4.223477	AGCCATTTGTGCCATCAAAATACT	59.777	37.500	3.65	0.33	40.05	2.12
2521	3810	4.506758	AGCCATTTGTGCCATCAAAATAC	58.493	39.130	3.65	0.00	40.05	1.89
2522	3811	4.822685	AGCCATTTGTGCCATCAAAATA	57.177	36.364	3.65	0.00	40.05	1.40
2781	5295	5.023533	TCCCTGCAATCATCAAGTACTAC	57.976	43.478	0.00	0.00	0.00	2.73
2854	5495	5.576384	TGAATTTGTTCTGAACACAACTTGC	59.424	36.000	21.95	9.15	41.97	4.01
2926	5801	3.475566	TCCAGACCTGCTGCATAATAC	57.524	47.619	1.31	0.00	43.50	1.89

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.