Multiple sequence alignment - TraesCS2D01G326000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G326000 chr2D 100.000 2877 0 0 1 2877 419478923 419481799 0.000000e+00 5313.0
1 TraesCS2D01G326000 chr2D 91.692 999 58 10 810 1783 419673582 419674580 0.000000e+00 1362.0
2 TraesCS2D01G326000 chr2D 98.125 320 6 0 251 570 419474140 419474459 2.500000e-155 558.0
3 TraesCS2D01G326000 chr2D 77.593 781 142 23 2089 2847 340364376 340365145 2.630000e-120 442.0
4 TraesCS2D01G326000 chr2D 82.051 195 23 7 1885 2071 246704739 246704549 3.840000e-34 156.0
5 TraesCS2D01G326000 chr2A 91.437 1378 80 19 820 2164 570502713 570501341 0.000000e+00 1857.0
6 TraesCS2D01G326000 chr2A 89.590 999 71 12 810 1783 570268812 570267822 0.000000e+00 1238.0
7 TraesCS2D01G326000 chr2A 91.817 721 46 9 2160 2868 570500777 570500058 0.000000e+00 992.0
8 TraesCS2D01G326000 chr2A 82.839 775 97 14 2096 2847 570284644 570283883 0.000000e+00 662.0
9 TraesCS2D01G326000 chr2A 93.264 386 22 3 1 386 20034965 20034584 1.500000e-157 566.0
10 TraesCS2D01G326000 chr2A 78.768 617 107 20 2089 2695 143032383 143031781 2.690000e-105 392.0
11 TraesCS2D01G326000 chr2A 96.482 199 6 1 571 769 570503174 570502977 7.690000e-86 327.0
12 TraesCS2D01G326000 chr2B 90.653 1102 53 18 771 1841 491961646 491962728 0.000000e+00 1419.0
13 TraesCS2D01G326000 chr2B 90.443 994 75 5 810 1783 492087834 492088827 0.000000e+00 1291.0
14 TraesCS2D01G326000 chr2B 79.597 397 50 16 2427 2820 252287022 252287390 3.680000e-64 255.0
15 TraesCS2D01G326000 chr2B 100.000 29 0 0 2058 2086 564430128 564430156 1.000000e-03 54.7
16 TraesCS2D01G326000 chr6A 94.150 547 19 7 39 573 60737417 60736872 0.000000e+00 821.0
17 TraesCS2D01G326000 chr6A 95.298 319 14 1 252 570 60742290 60741973 3.310000e-139 505.0
18 TraesCS2D01G326000 chr6A 82.570 568 77 10 2285 2847 208112133 208111583 5.580000e-132 481.0
19 TraesCS2D01G326000 chr6A 90.728 302 17 2 273 574 515035430 515035140 2.690000e-105 392.0
20 TraesCS2D01G326000 chr6A 91.579 285 13 5 286 570 515048017 515047744 1.620000e-102 383.0
21 TraesCS2D01G326000 chr6A 93.304 224 13 2 1 222 515043294 515043071 2.140000e-86 329.0
22 TraesCS2D01G326000 chr6A 96.970 99 3 0 1 99 60737509 60737411 1.770000e-37 167.0
23 TraesCS2D01G326000 chr3B 94.805 385 15 4 1 385 704244455 704244076 1.910000e-166 595.0
24 TraesCS2D01G326000 chr3B 81.281 203 27 8 1885 2079 225173195 225173394 1.380000e-33 154.0
25 TraesCS2D01G326000 chr4B 91.414 396 24 7 1 393 564082899 564082511 4.220000e-148 534.0
26 TraesCS2D01G326000 chr4B 79.771 524 93 11 2097 2610 392145291 392144771 4.530000e-98 368.0
27 TraesCS2D01G326000 chrUn 96.285 323 12 0 249 571 48989147 48988825 5.460000e-147 531.0
28 TraesCS2D01G326000 chrUn 93.182 44 3 0 2834 2877 362465046 362465003 6.650000e-07 65.8
29 TraesCS2D01G326000 chrUn 97.059 34 0 1 1000 1033 33171779 33171747 4.000000e-04 56.5
30 TraesCS2D01G326000 chr3A 78.879 767 134 16 2096 2847 435036686 435037439 7.160000e-136 494.0
31 TraesCS2D01G326000 chr3A 77.734 768 137 29 2096 2847 490937204 490936455 9.460000e-120 440.0
32 TraesCS2D01G326000 chr3A 81.683 202 27 8 1885 2079 176148211 176148013 2.970000e-35 159.0
33 TraesCS2D01G326000 chr3A 82.234 197 22 10 1885 2072 537734737 537734545 1.070000e-34 158.0
34 TraesCS2D01G326000 chr3D 78.244 763 126 23 2097 2847 290265574 290266308 1.220000e-123 453.0
35 TraesCS2D01G326000 chr3D 84.615 208 21 9 1882 2082 396215548 396215751 2.260000e-46 196.0
36 TraesCS2D01G326000 chr3D 97.436 39 1 0 2839 2877 253553892 253553854 1.850000e-07 67.6
37 TraesCS2D01G326000 chr5B 88.556 367 29 9 3 369 383503589 383503942 1.580000e-117 433.0
38 TraesCS2D01G326000 chr5B 88.556 367 29 7 3 369 386382688 386383041 1.580000e-117 433.0
39 TraesCS2D01G326000 chr5D 85.156 384 43 7 2470 2843 386932430 386932809 5.820000e-102 381.0
40 TraesCS2D01G326000 chr5D 83.372 427 46 11 2429 2843 74780497 74780910 3.500000e-99 372.0
41 TraesCS2D01G326000 chr5D 83.406 229 22 10 1882 2096 445106181 445106407 6.290000e-47 198.0
42 TraesCS2D01G326000 chr5D 97.500 40 1 0 2835 2874 300758569 300758608 5.140000e-08 69.4
43 TraesCS2D01G326000 chr5D 93.182 44 3 0 2834 2877 543829250 543829207 6.650000e-07 65.8
44 TraesCS2D01G326000 chr1D 79.492 551 99 12 2097 2636 306850515 306851062 2.090000e-101 379.0
45 TraesCS2D01G326000 chr1B 84.496 387 39 14 1 385 353547712 353548079 2.110000e-96 363.0
46 TraesCS2D01G326000 chr7A 78.662 553 105 11 2091 2633 381617337 381617886 3.530000e-94 355.0
47 TraesCS2D01G326000 chr6D 80.660 424 71 10 2429 2847 373066462 373066879 4.630000e-83 318.0
48 TraesCS2D01G326000 chr6D 85.990 207 20 5 1885 2086 148175333 148175131 2.250000e-51 213.0
49 TraesCS2D01G326000 chr6D 88.095 168 19 1 1920 2086 439769428 439769261 6.290000e-47 198.0
50 TraesCS2D01G326000 chr4D 80.905 398 55 14 2468 2847 206175035 206175429 7.800000e-76 294.0
51 TraesCS2D01G326000 chr4D 82.927 82 14 0 1781 1862 326559906 326559825 1.110000e-09 75.0
52 TraesCS2D01G326000 chr5A 85.778 225 21 7 1882 2096 562386480 562386703 8.020000e-56 228.0
53 TraesCS2D01G326000 chr7B 82.743 226 30 7 2617 2840 202562665 202562447 2.930000e-45 193.0
54 TraesCS2D01G326000 chr7B 95.349 43 2 0 2835 2877 598190406 598190448 5.140000e-08 69.4
55 TraesCS2D01G326000 chr7B 86.667 60 5 3 2819 2877 183875637 183875580 2.390000e-06 63.9
56 TraesCS2D01G326000 chr7D 98.750 80 1 0 362 441 92441478 92441557 2.990000e-30 143.0
57 TraesCS2D01G326000 chr6B 93.333 45 2 1 2834 2877 718315289 718315245 6.650000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G326000 chr2D 419478923 419481799 2876 False 5313.000000 5313 100.000000 1 2877 1 chr2D.!!$F3 2876
1 TraesCS2D01G326000 chr2D 419673582 419674580 998 False 1362.000000 1362 91.692000 810 1783 1 chr2D.!!$F4 973
2 TraesCS2D01G326000 chr2D 340364376 340365145 769 False 442.000000 442 77.593000 2089 2847 1 chr2D.!!$F1 758
3 TraesCS2D01G326000 chr2A 570267822 570268812 990 True 1238.000000 1238 89.590000 810 1783 1 chr2A.!!$R3 973
4 TraesCS2D01G326000 chr2A 570500058 570503174 3116 True 1058.666667 1857 93.245333 571 2868 3 chr2A.!!$R5 2297
5 TraesCS2D01G326000 chr2A 570283883 570284644 761 True 662.000000 662 82.839000 2096 2847 1 chr2A.!!$R4 751
6 TraesCS2D01G326000 chr2A 143031781 143032383 602 True 392.000000 392 78.768000 2089 2695 1 chr2A.!!$R2 606
7 TraesCS2D01G326000 chr2B 491961646 491962728 1082 False 1419.000000 1419 90.653000 771 1841 1 chr2B.!!$F2 1070
8 TraesCS2D01G326000 chr2B 492087834 492088827 993 False 1291.000000 1291 90.443000 810 1783 1 chr2B.!!$F3 973
9 TraesCS2D01G326000 chr6A 60736872 60737509 637 True 494.000000 821 95.560000 1 573 2 chr6A.!!$R6 572
10 TraesCS2D01G326000 chr6A 208111583 208112133 550 True 481.000000 481 82.570000 2285 2847 1 chr6A.!!$R2 562
11 TraesCS2D01G326000 chr4B 392144771 392145291 520 True 368.000000 368 79.771000 2097 2610 1 chr4B.!!$R1 513
12 TraesCS2D01G326000 chr3A 435036686 435037439 753 False 494.000000 494 78.879000 2096 2847 1 chr3A.!!$F1 751
13 TraesCS2D01G326000 chr3A 490936455 490937204 749 True 440.000000 440 77.734000 2096 2847 1 chr3A.!!$R2 751
14 TraesCS2D01G326000 chr3D 290265574 290266308 734 False 453.000000 453 78.244000 2097 2847 1 chr3D.!!$F1 750
15 TraesCS2D01G326000 chr1D 306850515 306851062 547 False 379.000000 379 79.492000 2097 2636 1 chr1D.!!$F1 539
16 TraesCS2D01G326000 chr7A 381617337 381617886 549 False 355.000000 355 78.662000 2091 2633 1 chr7A.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.032815 GCAACGGGCTAGGATCTCTC 59.967 60.0 0.0 0.0 40.25 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2260 3166 0.524392 CTAGCTCCGCACTTGACTCG 60.524 60.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.513158 ACAGACTTGGAGATCGCCG 59.487 57.895 11.16 0.00 0.00 6.46
19 20 1.880340 CAGACTTGGAGATCGCCGC 60.880 63.158 11.16 0.54 0.00 6.53
20 21 2.956964 GACTTGGAGATCGCCGCG 60.957 66.667 11.16 6.39 0.00 6.46
21 22 3.701604 GACTTGGAGATCGCCGCGT 62.702 63.158 13.39 9.85 0.00 6.01
22 23 2.956964 CTTGGAGATCGCCGCGTC 60.957 66.667 13.39 9.70 0.00 5.19
23 24 4.847516 TTGGAGATCGCCGCGTCG 62.848 66.667 13.39 1.71 0.00 5.12
49 50 4.664677 GCCTACCGCCGCGATGAT 62.665 66.667 15.93 0.00 0.00 2.45
50 51 2.734723 CCTACCGCCGCGATGATG 60.735 66.667 15.93 0.00 0.00 3.07
51 52 2.335011 CTACCGCCGCGATGATGA 59.665 61.111 15.93 0.00 0.00 2.92
52 53 1.730902 CTACCGCCGCGATGATGAG 60.731 63.158 15.93 0.00 0.00 2.90
53 54 3.841379 TACCGCCGCGATGATGAGC 62.841 63.158 15.93 0.00 0.00 4.26
54 55 4.957684 CCGCCGCGATGATGAGCT 62.958 66.667 15.93 0.00 0.00 4.09
55 56 3.401411 CGCCGCGATGATGAGCTC 61.401 66.667 8.23 6.82 0.00 4.09
56 57 3.040763 GCCGCGATGATGAGCTCC 61.041 66.667 8.23 0.00 0.00 4.70
57 58 2.733301 CCGCGATGATGAGCTCCT 59.267 61.111 8.23 0.00 0.00 3.69
58 59 1.372748 CCGCGATGATGAGCTCCTC 60.373 63.158 8.23 11.90 0.00 3.71
59 60 1.361632 CGCGATGATGAGCTCCTCA 59.638 57.895 21.80 21.80 44.99 3.86
60 61 0.249197 CGCGATGATGAGCTCCTCAA 60.249 55.000 23.08 9.15 44.04 3.02
61 62 1.500108 GCGATGATGAGCTCCTCAAG 58.500 55.000 23.08 19.81 44.04 3.02
74 75 4.270245 CTCCTCAAGCTCTTTCTTCTGT 57.730 45.455 0.00 0.00 0.00 3.41
75 76 4.640364 CTCCTCAAGCTCTTTCTTCTGTT 58.360 43.478 0.00 0.00 0.00 3.16
76 77 4.384056 TCCTCAAGCTCTTTCTTCTGTTG 58.616 43.478 0.00 0.00 0.00 3.33
77 78 3.058363 CCTCAAGCTCTTTCTTCTGTTGC 60.058 47.826 0.00 0.00 0.00 4.17
78 79 3.813443 TCAAGCTCTTTCTTCTGTTGCT 58.187 40.909 0.00 0.00 0.00 3.91
79 80 3.562973 TCAAGCTCTTTCTTCTGTTGCTG 59.437 43.478 0.00 0.00 0.00 4.41
80 81 2.502295 AGCTCTTTCTTCTGTTGCTGG 58.498 47.619 0.00 0.00 0.00 4.85
81 82 2.158696 AGCTCTTTCTTCTGTTGCTGGT 60.159 45.455 0.00 0.00 0.00 4.00
82 83 2.031333 GCTCTTTCTTCTGTTGCTGGTG 60.031 50.000 0.00 0.00 0.00 4.17
83 84 2.551459 CTCTTTCTTCTGTTGCTGGTGG 59.449 50.000 0.00 0.00 0.00 4.61
84 85 1.610522 CTTTCTTCTGTTGCTGGTGGG 59.389 52.381 0.00 0.00 0.00 4.61
85 86 0.550914 TTCTTCTGTTGCTGGTGGGT 59.449 50.000 0.00 0.00 0.00 4.51
86 87 0.179020 TCTTCTGTTGCTGGTGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
87 88 0.179020 CTTCTGTTGCTGGTGGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
88 89 0.478072 TTCTGTTGCTGGTGGGTGAT 59.522 50.000 0.00 0.00 0.00 3.06
89 90 0.036732 TCTGTTGCTGGTGGGTGATC 59.963 55.000 0.00 0.00 0.00 2.92
90 91 1.300971 CTGTTGCTGGTGGGTGATCG 61.301 60.000 0.00 0.00 0.00 3.69
91 92 1.302511 GTTGCTGGTGGGTGATCGT 60.303 57.895 0.00 0.00 0.00 3.73
92 93 1.003839 TTGCTGGTGGGTGATCGTC 60.004 57.895 0.00 0.00 0.00 4.20
93 94 2.509336 GCTGGTGGGTGATCGTCG 60.509 66.667 0.00 0.00 0.00 5.12
94 95 2.509336 CTGGTGGGTGATCGTCGC 60.509 66.667 0.00 0.00 0.00 5.19
95 96 4.077184 TGGTGGGTGATCGTCGCC 62.077 66.667 8.53 8.53 46.03 5.54
100 101 4.124351 GGTGATCGTCGCCACGGA 62.124 66.667 3.49 0.00 46.03 4.69
101 102 2.879462 GTGATCGTCGCCACGGAC 60.879 66.667 3.49 0.00 46.70 4.79
118 119 4.344668 CGTGAGCGTCTCGTACAG 57.655 61.111 0.00 0.00 32.35 2.74
119 120 1.863880 CGTGAGCGTCTCGTACAGC 60.864 63.158 0.00 0.00 32.35 4.40
120 121 1.863880 GTGAGCGTCTCGTACAGCG 60.864 63.158 0.00 0.30 43.01 5.18
121 122 2.945066 GAGCGTCTCGTACAGCGC 60.945 66.667 0.00 0.00 43.68 5.92
122 123 4.477975 AGCGTCTCGTACAGCGCC 62.478 66.667 2.29 0.00 44.11 6.53
123 124 4.477975 GCGTCTCGTACAGCGCCT 62.478 66.667 2.29 0.00 39.98 5.52
124 125 2.178521 CGTCTCGTACAGCGCCTT 59.821 61.111 2.29 0.00 41.07 4.35
125 126 2.152699 CGTCTCGTACAGCGCCTTG 61.153 63.158 2.29 0.00 41.07 3.61
126 127 2.126071 TCTCGTACAGCGCCTTGC 60.126 61.111 2.29 0.00 46.98 4.01
147 148 1.554836 CTCTGCAGAGAGGTTCTCCA 58.445 55.000 35.69 0.06 44.42 3.86
148 149 2.109774 CTCTGCAGAGAGGTTCTCCAT 58.890 52.381 35.69 0.00 44.42 3.41
149 150 2.101249 CTCTGCAGAGAGGTTCTCCATC 59.899 54.545 35.69 0.00 44.42 3.51
150 151 1.829849 CTGCAGAGAGGTTCTCCATCA 59.170 52.381 8.42 0.00 44.42 3.07
151 152 1.829849 TGCAGAGAGGTTCTCCATCAG 59.170 52.381 2.60 0.00 44.42 2.90
152 153 1.473080 GCAGAGAGGTTCTCCATCAGC 60.473 57.143 2.60 0.00 44.42 4.26
153 154 2.109774 CAGAGAGGTTCTCCATCAGCT 58.890 52.381 2.60 0.00 44.42 4.24
154 155 2.101249 CAGAGAGGTTCTCCATCAGCTC 59.899 54.545 2.60 0.00 44.42 4.09
155 156 2.548464 AGAGGTTCTCCATCAGCTCT 57.452 50.000 0.00 0.00 41.93 4.09
156 157 2.387757 AGAGGTTCTCCATCAGCTCTC 58.612 52.381 0.00 0.00 42.93 3.20
157 158 1.066908 GAGGTTCTCCATCAGCTCTCG 59.933 57.143 0.00 0.00 35.13 4.04
158 159 0.529555 GGTTCTCCATCAGCTCTCGC 60.530 60.000 0.00 0.00 0.00 5.03
159 160 0.529555 GTTCTCCATCAGCTCTCGCC 60.530 60.000 0.00 0.00 36.60 5.54
160 161 2.009424 TTCTCCATCAGCTCTCGCCG 62.009 60.000 0.00 0.00 36.60 6.46
161 162 4.212913 TCCATCAGCTCTCGCCGC 62.213 66.667 0.00 0.00 36.60 6.53
200 201 4.436998 GCCCTCGTCTCCGTGGTG 62.437 72.222 3.00 0.00 44.29 4.17
201 202 2.675423 CCCTCGTCTCCGTGGTGA 60.675 66.667 3.00 0.00 44.29 4.02
202 203 2.052690 CCCTCGTCTCCGTGGTGAT 61.053 63.158 3.00 0.00 44.29 3.06
203 204 1.139734 CCTCGTCTCCGTGGTGATG 59.860 63.158 4.21 4.21 41.61 3.07
204 205 1.595993 CCTCGTCTCCGTGGTGATGT 61.596 60.000 9.35 0.00 41.61 3.06
205 206 0.243907 CTCGTCTCCGTGGTGATGTT 59.756 55.000 9.35 0.00 35.01 2.71
206 207 0.242825 TCGTCTCCGTGGTGATGTTC 59.757 55.000 9.35 0.00 35.01 3.18
207 208 0.736325 CGTCTCCGTGGTGATGTTCC 60.736 60.000 2.68 0.00 0.00 3.62
208 209 0.320374 GTCTCCGTGGTGATGTTCCA 59.680 55.000 0.00 0.00 0.00 3.53
209 210 1.052617 TCTCCGTGGTGATGTTCCAA 58.947 50.000 0.00 0.00 36.68 3.53
210 211 1.156736 CTCCGTGGTGATGTTCCAAC 58.843 55.000 0.00 0.00 36.68 3.77
211 212 0.601576 TCCGTGGTGATGTTCCAACG 60.602 55.000 0.00 0.00 36.68 4.10
212 213 1.206578 CGTGGTGATGTTCCAACGC 59.793 57.895 0.00 0.00 36.68 4.84
213 214 1.502990 CGTGGTGATGTTCCAACGCA 61.503 55.000 0.00 0.00 36.68 5.24
214 215 0.238289 GTGGTGATGTTCCAACGCAG 59.762 55.000 0.00 0.00 36.68 5.18
215 216 1.210155 GGTGATGTTCCAACGCAGC 59.790 57.895 0.00 0.00 0.00 5.25
216 217 1.154413 GTGATGTTCCAACGCAGCG 60.154 57.895 14.82 14.82 0.00 5.18
217 218 1.596752 TGATGTTCCAACGCAGCGT 60.597 52.632 16.61 16.61 43.97 5.07
218 219 1.154413 GATGTTCCAACGCAGCGTG 60.154 57.895 23.78 15.27 39.99 5.34
219 220 2.513065 GATGTTCCAACGCAGCGTGG 62.513 60.000 23.78 23.28 39.99 4.94
220 221 2.970324 GTTCCAACGCAGCGTGGA 60.970 61.111 24.58 25.35 39.99 4.02
221 222 2.031919 TTCCAACGCAGCGTGGAT 59.968 55.556 28.38 11.60 39.99 3.41
222 223 2.324330 TTCCAACGCAGCGTGGATG 61.324 57.895 28.38 20.79 39.99 3.51
223 224 3.803082 CCAACGCAGCGTGGATGG 61.803 66.667 24.58 22.03 39.99 3.51
224 225 3.049674 CAACGCAGCGTGGATGGT 61.050 61.111 23.78 0.33 39.99 3.55
225 226 3.049674 AACGCAGCGTGGATGGTG 61.050 61.111 23.78 0.00 39.99 4.17
227 228 4.758251 CGCAGCGTGGATGGTGGA 62.758 66.667 6.65 0.00 37.81 4.02
228 229 2.359850 GCAGCGTGGATGGTGGAA 60.360 61.111 0.54 0.00 37.81 3.53
229 230 1.971167 GCAGCGTGGATGGTGGAAA 60.971 57.895 0.54 0.00 37.81 3.13
230 231 1.523154 GCAGCGTGGATGGTGGAAAA 61.523 55.000 0.54 0.00 37.81 2.29
231 232 0.958091 CAGCGTGGATGGTGGAAAAA 59.042 50.000 0.00 0.00 33.81 1.94
232 233 1.545582 CAGCGTGGATGGTGGAAAAAT 59.454 47.619 0.00 0.00 33.81 1.82
233 234 2.029110 CAGCGTGGATGGTGGAAAAATT 60.029 45.455 0.00 0.00 33.81 1.82
234 235 2.632512 AGCGTGGATGGTGGAAAAATTT 59.367 40.909 0.00 0.00 0.00 1.82
235 236 2.736192 GCGTGGATGGTGGAAAAATTTG 59.264 45.455 0.00 0.00 0.00 2.32
236 237 3.324993 CGTGGATGGTGGAAAAATTTGG 58.675 45.455 0.00 0.00 0.00 3.28
237 238 3.073678 GTGGATGGTGGAAAAATTTGGC 58.926 45.455 0.00 0.00 0.00 4.52
238 239 2.978278 TGGATGGTGGAAAAATTTGGCT 59.022 40.909 0.00 0.00 0.00 4.75
239 240 3.007831 TGGATGGTGGAAAAATTTGGCTC 59.992 43.478 0.00 0.00 0.00 4.70
240 241 3.261643 GGATGGTGGAAAAATTTGGCTCT 59.738 43.478 0.00 0.00 0.00 4.09
241 242 3.749665 TGGTGGAAAAATTTGGCTCTG 57.250 42.857 0.00 0.00 0.00 3.35
242 243 3.303938 TGGTGGAAAAATTTGGCTCTGA 58.696 40.909 0.00 0.00 0.00 3.27
243 244 3.321682 TGGTGGAAAAATTTGGCTCTGAG 59.678 43.478 0.00 0.00 0.00 3.35
244 245 3.321968 GGTGGAAAAATTTGGCTCTGAGT 59.678 43.478 6.53 0.00 0.00 3.41
245 246 4.522789 GGTGGAAAAATTTGGCTCTGAGTA 59.477 41.667 6.53 0.00 0.00 2.59
246 247 5.461526 GTGGAAAAATTTGGCTCTGAGTAC 58.538 41.667 6.53 0.73 0.00 2.73
247 248 4.522789 TGGAAAAATTTGGCTCTGAGTACC 59.477 41.667 6.53 0.42 0.00 3.34
248 249 4.522789 GGAAAAATTTGGCTCTGAGTACCA 59.477 41.667 6.53 3.25 0.00 3.25
249 250 5.010617 GGAAAAATTTGGCTCTGAGTACCAA 59.989 40.000 11.32 11.32 41.61 3.67
250 251 6.295292 GGAAAAATTTGGCTCTGAGTACCAAT 60.295 38.462 14.81 6.38 42.77 3.16
251 252 6.670695 AAAATTTGGCTCTGAGTACCAATT 57.329 33.333 14.81 10.17 42.77 2.32
252 253 5.649782 AATTTGGCTCTGAGTACCAATTG 57.350 39.130 14.81 0.00 42.77 2.32
253 254 3.788227 TTGGCTCTGAGTACCAATTGT 57.212 42.857 11.32 0.00 38.52 2.71
254 255 3.788227 TGGCTCTGAGTACCAATTGTT 57.212 42.857 6.53 0.00 0.00 2.83
255 256 4.901197 TGGCTCTGAGTACCAATTGTTA 57.099 40.909 6.53 0.00 0.00 2.41
256 257 4.832248 TGGCTCTGAGTACCAATTGTTAG 58.168 43.478 6.53 0.00 0.00 2.34
257 258 3.623510 GGCTCTGAGTACCAATTGTTAGC 59.376 47.826 6.53 0.00 0.00 3.09
258 259 4.253685 GCTCTGAGTACCAATTGTTAGCA 58.746 43.478 6.53 0.00 0.00 3.49
259 260 4.695455 GCTCTGAGTACCAATTGTTAGCAA 59.305 41.667 6.53 0.00 39.16 3.91
260 261 5.390991 GCTCTGAGTACCAATTGTTAGCAAC 60.391 44.000 6.53 0.00 37.44 4.17
261 262 4.688879 TCTGAGTACCAATTGTTAGCAACG 59.311 41.667 4.43 0.00 37.44 4.10
262 263 3.749088 TGAGTACCAATTGTTAGCAACGG 59.251 43.478 4.43 7.75 37.44 4.44
263 264 3.078837 AGTACCAATTGTTAGCAACGGG 58.921 45.455 12.44 10.69 37.44 5.28
264 265 0.601057 ACCAATTGTTAGCAACGGGC 59.399 50.000 12.44 0.00 45.30 6.13
273 274 4.760757 GCAACGGGCTAGGATCTC 57.239 61.111 0.00 0.00 40.25 2.75
274 275 2.128729 GCAACGGGCTAGGATCTCT 58.871 57.895 0.00 0.00 40.25 3.10
275 276 0.032815 GCAACGGGCTAGGATCTCTC 59.967 60.000 0.00 0.00 40.25 3.20
276 277 1.698506 CAACGGGCTAGGATCTCTCT 58.301 55.000 0.00 0.00 0.00 3.10
277 278 1.611491 CAACGGGCTAGGATCTCTCTC 59.389 57.143 0.00 0.00 0.00 3.20
278 279 1.145571 ACGGGCTAGGATCTCTCTCT 58.854 55.000 0.00 0.00 0.00 3.10
279 280 2.340731 ACGGGCTAGGATCTCTCTCTA 58.659 52.381 0.00 0.00 0.00 2.43
280 281 2.916934 ACGGGCTAGGATCTCTCTCTAT 59.083 50.000 0.00 0.00 0.00 1.98
281 282 3.332485 ACGGGCTAGGATCTCTCTCTATT 59.668 47.826 0.00 0.00 0.00 1.73
282 283 3.694072 CGGGCTAGGATCTCTCTCTATTG 59.306 52.174 0.00 0.00 0.00 1.90
283 284 4.566697 CGGGCTAGGATCTCTCTCTATTGA 60.567 50.000 0.00 0.00 0.00 2.57
284 285 4.705023 GGGCTAGGATCTCTCTCTATTGAC 59.295 50.000 0.00 0.00 0.00 3.18
285 286 4.394920 GGCTAGGATCTCTCTCTATTGACG 59.605 50.000 0.00 0.00 0.00 4.35
286 287 5.242434 GCTAGGATCTCTCTCTATTGACGA 58.758 45.833 0.00 0.00 0.00 4.20
287 288 5.703592 GCTAGGATCTCTCTCTATTGACGAA 59.296 44.000 0.00 0.00 0.00 3.85
288 289 6.348213 GCTAGGATCTCTCTCTATTGACGAAC 60.348 46.154 0.00 0.00 0.00 3.95
289 290 5.441500 AGGATCTCTCTCTATTGACGAACA 58.558 41.667 0.00 0.00 0.00 3.18
290 291 6.068010 AGGATCTCTCTCTATTGACGAACAT 58.932 40.000 0.00 0.00 0.00 2.71
291 292 6.206634 AGGATCTCTCTCTATTGACGAACATC 59.793 42.308 0.00 0.00 0.00 3.06
292 293 6.016693 GGATCTCTCTCTATTGACGAACATCA 60.017 42.308 0.00 0.00 0.00 3.07
293 294 6.125327 TCTCTCTCTATTGACGAACATCAC 57.875 41.667 0.00 0.00 0.00 3.06
294 295 5.883115 TCTCTCTCTATTGACGAACATCACT 59.117 40.000 0.00 0.00 0.00 3.41
295 296 6.037720 TCTCTCTCTATTGACGAACATCACTC 59.962 42.308 0.00 0.00 0.00 3.51
296 297 5.648092 TCTCTCTATTGACGAACATCACTCA 59.352 40.000 0.00 0.00 0.00 3.41
297 298 5.884771 TCTCTATTGACGAACATCACTCAG 58.115 41.667 0.00 0.00 0.00 3.35
298 299 5.648092 TCTCTATTGACGAACATCACTCAGA 59.352 40.000 0.00 0.00 0.00 3.27
299 300 6.319911 TCTCTATTGACGAACATCACTCAGAT 59.680 38.462 0.00 0.00 37.48 2.90
300 301 6.499172 TCTATTGACGAACATCACTCAGATC 58.501 40.000 0.00 0.00 33.72 2.75
301 302 4.790765 TTGACGAACATCACTCAGATCT 57.209 40.909 0.00 0.00 33.72 2.75
302 303 4.102035 TGACGAACATCACTCAGATCTG 57.898 45.455 17.07 17.07 33.72 2.90
303 304 3.507622 TGACGAACATCACTCAGATCTGT 59.492 43.478 21.92 0.90 33.72 3.41
304 305 4.700213 TGACGAACATCACTCAGATCTGTA 59.300 41.667 21.92 8.43 33.72 2.74
305 306 5.163713 TGACGAACATCACTCAGATCTGTAG 60.164 44.000 21.92 18.53 33.72 2.74
306 307 4.041049 CGAACATCACTCAGATCTGTAGC 58.959 47.826 21.92 3.91 33.72 3.58
307 308 4.202000 CGAACATCACTCAGATCTGTAGCT 60.202 45.833 21.92 0.00 33.72 3.32
308 309 4.916983 ACATCACTCAGATCTGTAGCTC 57.083 45.455 21.92 0.00 33.72 4.09
309 310 4.535781 ACATCACTCAGATCTGTAGCTCT 58.464 43.478 21.92 2.10 33.72 4.09
310 311 5.689835 ACATCACTCAGATCTGTAGCTCTA 58.310 41.667 21.92 0.19 33.72 2.43
311 312 6.306199 ACATCACTCAGATCTGTAGCTCTAT 58.694 40.000 21.92 5.86 33.72 1.98
312 313 6.777091 ACATCACTCAGATCTGTAGCTCTATT 59.223 38.462 21.92 0.00 33.72 1.73
313 314 7.287466 ACATCACTCAGATCTGTAGCTCTATTT 59.713 37.037 21.92 0.11 33.72 1.40
314 315 7.270757 TCACTCAGATCTGTAGCTCTATTTC 57.729 40.000 21.92 0.00 0.00 2.17
315 316 6.017523 TCACTCAGATCTGTAGCTCTATTTCG 60.018 42.308 21.92 0.00 0.00 3.46
316 317 6.017523 CACTCAGATCTGTAGCTCTATTTCGA 60.018 42.308 21.92 0.00 0.00 3.71
317 318 6.544197 ACTCAGATCTGTAGCTCTATTTCGAA 59.456 38.462 21.92 0.00 0.00 3.71
318 319 7.230510 ACTCAGATCTGTAGCTCTATTTCGAAT 59.769 37.037 21.92 0.00 0.00 3.34
319 320 7.946207 TCAGATCTGTAGCTCTATTTCGAATT 58.054 34.615 21.92 0.00 0.00 2.17
320 321 8.417106 TCAGATCTGTAGCTCTATTTCGAATTT 58.583 33.333 21.92 0.00 0.00 1.82
321 322 9.684448 CAGATCTGTAGCTCTATTTCGAATTTA 57.316 33.333 14.95 0.00 0.00 1.40
322 323 9.685828 AGATCTGTAGCTCTATTTCGAATTTAC 57.314 33.333 0.00 0.00 0.00 2.01
323 324 9.464714 GATCTGTAGCTCTATTTCGAATTTACA 57.535 33.333 0.00 0.51 0.00 2.41
324 325 9.817809 ATCTGTAGCTCTATTTCGAATTTACAA 57.182 29.630 0.00 0.00 0.00 2.41
325 326 9.302345 TCTGTAGCTCTATTTCGAATTTACAAG 57.698 33.333 0.00 0.00 0.00 3.16
326 327 7.906160 TGTAGCTCTATTTCGAATTTACAAGC 58.094 34.615 0.00 4.30 0.00 4.01
327 328 6.364945 AGCTCTATTTCGAATTTACAAGCC 57.635 37.500 0.00 0.00 0.00 4.35
328 329 5.006746 AGCTCTATTTCGAATTTACAAGCCG 59.993 40.000 0.00 0.00 0.00 5.52
329 330 5.728351 TCTATTTCGAATTTACAAGCCGG 57.272 39.130 0.00 0.00 0.00 6.13
330 331 3.775661 ATTTCGAATTTACAAGCCGGG 57.224 42.857 2.18 0.00 0.00 5.73
331 332 2.476126 TTCGAATTTACAAGCCGGGA 57.524 45.000 2.18 0.00 0.00 5.14
332 333 2.018542 TCGAATTTACAAGCCGGGAG 57.981 50.000 2.18 0.00 0.00 4.30
344 345 4.787735 CGGGAGGAAGGAGGAAGA 57.212 61.111 0.00 0.00 0.00 2.87
345 346 2.510664 CGGGAGGAAGGAGGAAGAG 58.489 63.158 0.00 0.00 0.00 2.85
346 347 0.033011 CGGGAGGAAGGAGGAAGAGA 60.033 60.000 0.00 0.00 0.00 3.10
347 348 1.788229 GGGAGGAAGGAGGAAGAGAG 58.212 60.000 0.00 0.00 0.00 3.20
348 349 1.007842 GGGAGGAAGGAGGAAGAGAGT 59.992 57.143 0.00 0.00 0.00 3.24
349 350 2.561069 GGGAGGAAGGAGGAAGAGAGTT 60.561 54.545 0.00 0.00 0.00 3.01
350 351 3.309994 GGGAGGAAGGAGGAAGAGAGTTA 60.310 52.174 0.00 0.00 0.00 2.24
351 352 3.702548 GGAGGAAGGAGGAAGAGAGTTAC 59.297 52.174 0.00 0.00 0.00 2.50
352 353 4.345854 GAGGAAGGAGGAAGAGAGTTACA 58.654 47.826 0.00 0.00 0.00 2.41
353 354 4.753186 AGGAAGGAGGAAGAGAGTTACAA 58.247 43.478 0.00 0.00 0.00 2.41
354 355 4.775253 AGGAAGGAGGAAGAGAGTTACAAG 59.225 45.833 0.00 0.00 0.00 3.16
355 356 4.500127 GAAGGAGGAAGAGAGTTACAAGC 58.500 47.826 0.00 0.00 0.00 4.01
356 357 3.511477 AGGAGGAAGAGAGTTACAAGCA 58.489 45.455 0.00 0.00 0.00 3.91
357 358 3.904339 AGGAGGAAGAGAGTTACAAGCAA 59.096 43.478 0.00 0.00 0.00 3.91
358 359 4.348168 AGGAGGAAGAGAGTTACAAGCAAA 59.652 41.667 0.00 0.00 0.00 3.68
359 360 4.452795 GGAGGAAGAGAGTTACAAGCAAAC 59.547 45.833 0.00 0.00 0.00 2.93
360 361 4.058817 AGGAAGAGAGTTACAAGCAAACG 58.941 43.478 0.00 0.00 32.00 3.60
361 362 3.186613 GGAAGAGAGTTACAAGCAAACGG 59.813 47.826 0.00 0.00 32.00 4.44
362 363 2.143925 AGAGAGTTACAAGCAAACGGC 58.856 47.619 0.00 0.00 45.30 5.68
380 381 2.594592 GGACTGCCGTGCCAAACT 60.595 61.111 0.00 0.00 0.00 2.66
381 382 2.639286 GACTGCCGTGCCAAACTG 59.361 61.111 0.00 0.00 0.00 3.16
382 383 2.906897 ACTGCCGTGCCAAACTGG 60.907 61.111 0.00 0.00 41.55 4.00
391 392 2.359975 CCAAACTGGCCGACCCTC 60.360 66.667 0.00 0.00 33.59 4.30
392 393 2.429930 CAAACTGGCCGACCCTCA 59.570 61.111 0.00 0.00 33.59 3.86
393 394 1.966451 CAAACTGGCCGACCCTCAC 60.966 63.158 0.00 0.00 33.59 3.51
394 395 2.448582 AAACTGGCCGACCCTCACA 61.449 57.895 0.00 0.00 33.59 3.58
395 396 1.990160 AAACTGGCCGACCCTCACAA 61.990 55.000 0.00 0.00 33.59 3.33
396 397 2.046892 CTGGCCGACCCTCACAAG 60.047 66.667 0.00 0.00 33.59 3.16
397 398 3.612247 CTGGCCGACCCTCACAAGG 62.612 68.421 0.00 0.00 42.95 3.61
398 399 3.319198 GGCCGACCCTCACAAGGA 61.319 66.667 0.00 0.00 46.67 3.36
399 400 2.747686 GCCGACCCTCACAAGGAA 59.252 61.111 0.00 0.00 46.67 3.36
400 401 1.376037 GCCGACCCTCACAAGGAAG 60.376 63.158 0.00 0.00 46.67 3.46
401 402 1.376037 CCGACCCTCACAAGGAAGC 60.376 63.158 0.00 0.00 46.67 3.86
402 403 1.674057 CGACCCTCACAAGGAAGCT 59.326 57.895 0.00 0.00 46.67 3.74
403 404 0.671781 CGACCCTCACAAGGAAGCTG 60.672 60.000 0.00 0.00 46.67 4.24
404 405 0.957888 GACCCTCACAAGGAAGCTGC 60.958 60.000 0.00 0.00 46.67 5.25
405 406 1.676967 CCCTCACAAGGAAGCTGCC 60.677 63.158 0.73 0.73 46.67 4.85
406 407 1.676967 CCTCACAAGGAAGCTGCCC 60.677 63.158 7.30 1.53 46.67 5.36
407 408 1.377994 CTCACAAGGAAGCTGCCCT 59.622 57.895 7.30 4.36 35.03 5.19
408 409 0.676151 CTCACAAGGAAGCTGCCCTC 60.676 60.000 7.30 0.00 32.57 4.30
409 410 1.676967 CACAAGGAAGCTGCCCTCC 60.677 63.158 7.30 9.75 32.57 4.30
410 411 1.849823 ACAAGGAAGCTGCCCTCCT 60.850 57.895 7.30 13.63 32.57 3.69
411 412 1.381851 CAAGGAAGCTGCCCTCCTT 59.618 57.895 21.76 21.76 42.72 3.36
412 413 0.620556 CAAGGAAGCTGCCCTCCTTA 59.379 55.000 25.03 0.00 40.27 2.69
413 414 1.213926 CAAGGAAGCTGCCCTCCTTAT 59.786 52.381 25.03 9.22 40.27 1.73
414 415 1.601248 AGGAAGCTGCCCTCCTTATT 58.399 50.000 7.30 0.00 0.00 1.40
415 416 1.925959 AGGAAGCTGCCCTCCTTATTT 59.074 47.619 7.30 0.00 0.00 1.40
416 417 3.123273 AGGAAGCTGCCCTCCTTATTTA 58.877 45.455 7.30 0.00 0.00 1.40
417 418 3.724209 AGGAAGCTGCCCTCCTTATTTAT 59.276 43.478 7.30 0.00 0.00 1.40
418 419 4.075682 GGAAGCTGCCCTCCTTATTTATC 58.924 47.826 0.00 0.00 0.00 1.75
419 420 3.797559 AGCTGCCCTCCTTATTTATCC 57.202 47.619 0.00 0.00 0.00 2.59
420 421 3.331120 AGCTGCCCTCCTTATTTATCCT 58.669 45.455 0.00 0.00 0.00 3.24
421 422 4.503398 AGCTGCCCTCCTTATTTATCCTA 58.497 43.478 0.00 0.00 0.00 2.94
422 423 4.287326 AGCTGCCCTCCTTATTTATCCTAC 59.713 45.833 0.00 0.00 0.00 3.18
423 424 4.565861 GCTGCCCTCCTTATTTATCCTACC 60.566 50.000 0.00 0.00 0.00 3.18
424 425 4.839589 TGCCCTCCTTATTTATCCTACCT 58.160 43.478 0.00 0.00 0.00 3.08
425 426 4.844655 TGCCCTCCTTATTTATCCTACCTC 59.155 45.833 0.00 0.00 0.00 3.85
426 427 4.844655 GCCCTCCTTATTTATCCTACCTCA 59.155 45.833 0.00 0.00 0.00 3.86
427 428 5.489278 GCCCTCCTTATTTATCCTACCTCAT 59.511 44.000 0.00 0.00 0.00 2.90
428 429 6.577239 GCCCTCCTTATTTATCCTACCTCATG 60.577 46.154 0.00 0.00 0.00 3.07
429 430 6.069963 CCCTCCTTATTTATCCTACCTCATGG 60.070 46.154 0.00 0.00 39.83 3.66
431 432 7.310734 CCTCCTTATTTATCCTACCTCATGGTC 60.311 44.444 0.00 0.00 44.78 4.02
432 433 6.500751 TCCTTATTTATCCTACCTCATGGTCC 59.499 42.308 0.00 0.00 44.78 4.46
433 434 6.272324 CCTTATTTATCCTACCTCATGGTCCA 59.728 42.308 0.00 0.00 44.78 4.02
434 435 7.037297 CCTTATTTATCCTACCTCATGGTCCAT 60.037 40.741 0.00 0.00 44.78 3.41
435 436 6.786843 ATTTATCCTACCTCATGGTCCATT 57.213 37.500 0.00 0.00 44.78 3.16
436 437 5.825593 TTATCCTACCTCATGGTCCATTC 57.174 43.478 0.00 0.00 44.78 2.67
437 438 2.408565 TCCTACCTCATGGTCCATTCC 58.591 52.381 0.00 0.00 44.78 3.01
438 439 2.022035 TCCTACCTCATGGTCCATTCCT 60.022 50.000 0.00 0.00 44.78 3.36
439 440 2.780010 CCTACCTCATGGTCCATTCCTT 59.220 50.000 0.00 0.00 44.78 3.36
440 441 2.814805 ACCTCATGGTCCATTCCTTG 57.185 50.000 0.00 0.00 44.78 3.61
441 442 1.341383 ACCTCATGGTCCATTCCTTGC 60.341 52.381 0.00 0.00 44.78 4.01
442 443 1.396653 CTCATGGTCCATTCCTTGCC 58.603 55.000 0.00 0.00 34.12 4.52
443 444 0.703488 TCATGGTCCATTCCTTGCCA 59.297 50.000 0.00 0.00 34.12 4.92
444 445 1.108776 CATGGTCCATTCCTTGCCAG 58.891 55.000 0.00 0.00 32.28 4.85
445 446 0.685458 ATGGTCCATTCCTTGCCAGC 60.685 55.000 0.00 0.00 32.28 4.85
446 447 2.409870 GGTCCATTCCTTGCCAGCG 61.410 63.158 0.00 0.00 0.00 5.18
447 448 1.675641 GTCCATTCCTTGCCAGCGT 60.676 57.895 0.00 0.00 0.00 5.07
448 449 0.392461 GTCCATTCCTTGCCAGCGTA 60.392 55.000 0.00 0.00 0.00 4.42
449 450 0.107703 TCCATTCCTTGCCAGCGTAG 60.108 55.000 0.00 0.00 0.00 3.51
469 470 4.552365 CGTGGATGGGCGCCTGAT 62.552 66.667 28.56 18.80 0.00 2.90
470 471 2.592861 GTGGATGGGCGCCTGATC 60.593 66.667 28.56 25.33 0.00 2.92
471 472 3.877450 TGGATGGGCGCCTGATCC 61.877 66.667 33.93 33.93 36.87 3.36
472 473 3.564218 GGATGGGCGCCTGATCCT 61.564 66.667 33.57 12.89 34.00 3.24
473 474 2.031768 GATGGGCGCCTGATCCTC 59.968 66.667 28.56 8.18 0.00 3.71
474 475 3.543536 GATGGGCGCCTGATCCTCC 62.544 68.421 28.56 7.32 0.00 4.30
478 479 4.899239 GCGCCTGATCCTCCGGTG 62.899 72.222 0.00 0.00 0.00 4.94
479 480 4.227134 CGCCTGATCCTCCGGTGG 62.227 72.222 16.75 16.75 0.00 4.61
480 481 3.866582 GCCTGATCCTCCGGTGGG 61.867 72.222 22.07 15.35 0.00 4.61
481 482 3.866582 CCTGATCCTCCGGTGGGC 61.867 72.222 22.07 14.67 0.00 5.36
482 483 3.866582 CTGATCCTCCGGTGGGCC 61.867 72.222 22.07 14.06 0.00 5.80
498 499 4.760047 CCCCGGCGTCAGTGGAAG 62.760 72.222 6.01 0.00 0.00 3.46
499 500 3.691342 CCCGGCGTCAGTGGAAGA 61.691 66.667 6.01 0.00 0.00 2.87
500 501 2.432628 CCGGCGTCAGTGGAAGAC 60.433 66.667 6.01 0.00 0.00 3.01
501 502 2.432628 CGGCGTCAGTGGAAGACC 60.433 66.667 0.00 0.00 32.41 3.85
502 503 2.932234 CGGCGTCAGTGGAAGACCT 61.932 63.158 0.00 0.00 37.04 3.85
503 504 1.371558 GGCGTCAGTGGAAGACCTT 59.628 57.895 0.00 0.00 37.04 3.50
504 505 0.951040 GGCGTCAGTGGAAGACCTTG 60.951 60.000 0.00 0.00 37.04 3.61
505 506 0.951040 GCGTCAGTGGAAGACCTTGG 60.951 60.000 0.00 0.00 37.04 3.61
506 507 0.951040 CGTCAGTGGAAGACCTTGGC 60.951 60.000 0.00 0.00 37.04 4.52
507 508 0.398318 GTCAGTGGAAGACCTTGGCT 59.602 55.000 0.00 0.00 37.04 4.75
508 509 1.140312 TCAGTGGAAGACCTTGGCTT 58.860 50.000 0.00 0.00 37.04 4.35
509 510 1.202806 TCAGTGGAAGACCTTGGCTTG 60.203 52.381 0.00 0.00 37.04 4.01
510 511 0.846693 AGTGGAAGACCTTGGCTTGT 59.153 50.000 0.00 0.00 37.04 3.16
511 512 1.215423 AGTGGAAGACCTTGGCTTGTT 59.785 47.619 0.00 0.00 37.04 2.83
512 513 1.338020 GTGGAAGACCTTGGCTTGTTG 59.662 52.381 0.00 0.00 37.04 3.33
513 514 1.214175 TGGAAGACCTTGGCTTGTTGA 59.786 47.619 0.00 0.00 37.04 3.18
514 515 1.609072 GGAAGACCTTGGCTTGTTGAC 59.391 52.381 0.00 0.00 26.99 3.18
515 516 2.576615 GAAGACCTTGGCTTGTTGACT 58.423 47.619 0.00 0.00 26.99 3.41
516 517 1.972872 AGACCTTGGCTTGTTGACTG 58.027 50.000 0.00 0.00 0.00 3.51
517 518 0.954452 GACCTTGGCTTGTTGACTGG 59.046 55.000 0.00 0.00 0.00 4.00
518 519 0.468029 ACCTTGGCTTGTTGACTGGG 60.468 55.000 0.00 0.00 0.00 4.45
519 520 0.468029 CCTTGGCTTGTTGACTGGGT 60.468 55.000 0.00 0.00 0.00 4.51
520 521 0.954452 CTTGGCTTGTTGACTGGGTC 59.046 55.000 0.00 0.00 0.00 4.46
521 522 0.550914 TTGGCTTGTTGACTGGGTCT 59.449 50.000 0.00 0.00 33.15 3.85
522 523 0.550914 TGGCTTGTTGACTGGGTCTT 59.449 50.000 0.00 0.00 33.15 3.01
523 524 0.954452 GGCTTGTTGACTGGGTCTTG 59.046 55.000 0.00 0.00 33.15 3.02
524 525 0.954452 GCTTGTTGACTGGGTCTTGG 59.046 55.000 0.00 0.00 33.15 3.61
525 526 0.954452 CTTGTTGACTGGGTCTTGGC 59.046 55.000 0.00 0.00 33.15 4.52
526 527 0.550914 TTGTTGACTGGGTCTTGGCT 59.449 50.000 0.00 0.00 33.15 4.75
527 528 0.179020 TGTTGACTGGGTCTTGGCTG 60.179 55.000 0.00 0.00 33.15 4.85
528 529 1.228245 TTGACTGGGTCTTGGCTGC 60.228 57.895 0.00 0.00 33.15 5.25
529 530 2.360475 GACTGGGTCTTGGCTGCC 60.360 66.667 12.87 12.87 0.00 4.85
530 531 3.927481 GACTGGGTCTTGGCTGCCC 62.927 68.421 17.53 0.00 42.64 5.36
531 532 3.655211 CTGGGTCTTGGCTGCCCT 61.655 66.667 17.53 0.00 42.77 5.19
532 533 3.933048 CTGGGTCTTGGCTGCCCTG 62.933 68.421 17.53 8.96 42.77 4.45
533 534 4.748144 GGGTCTTGGCTGCCCTGG 62.748 72.222 17.53 6.26 39.31 4.45
542 543 4.864334 CTGCCCTGGCCGTCATCC 62.864 72.222 5.57 0.00 41.09 3.51
544 545 4.554036 GCCCTGGCCGTCATCCTC 62.554 72.222 0.00 0.00 34.56 3.71
545 546 2.765807 CCCTGGCCGTCATCCTCT 60.766 66.667 0.00 0.00 0.00 3.69
546 547 2.503061 CCTGGCCGTCATCCTCTG 59.497 66.667 0.00 0.00 0.00 3.35
547 548 2.362369 CCTGGCCGTCATCCTCTGT 61.362 63.158 0.00 0.00 0.00 3.41
548 549 1.043116 CCTGGCCGTCATCCTCTGTA 61.043 60.000 0.00 0.00 0.00 2.74
549 550 0.824109 CTGGCCGTCATCCTCTGTAA 59.176 55.000 0.00 0.00 0.00 2.41
550 551 0.535335 TGGCCGTCATCCTCTGTAAC 59.465 55.000 0.00 0.00 0.00 2.50
551 552 0.179081 GGCCGTCATCCTCTGTAACC 60.179 60.000 0.00 0.00 0.00 2.85
552 553 0.527817 GCCGTCATCCTCTGTAACCG 60.528 60.000 0.00 0.00 0.00 4.44
553 554 0.102481 CCGTCATCCTCTGTAACCGG 59.898 60.000 0.00 0.00 0.00 5.28
554 555 0.527817 CGTCATCCTCTGTAACCGGC 60.528 60.000 0.00 0.00 0.00 6.13
555 556 0.824759 GTCATCCTCTGTAACCGGCT 59.175 55.000 0.00 0.00 0.00 5.52
556 557 1.112113 TCATCCTCTGTAACCGGCTC 58.888 55.000 0.00 0.00 0.00 4.70
557 558 0.249073 CATCCTCTGTAACCGGCTCG 60.249 60.000 0.00 0.00 0.00 5.03
567 568 2.499205 CCGGCTCGGTGATGCTAA 59.501 61.111 5.56 0.00 42.73 3.09
568 569 1.883084 CCGGCTCGGTGATGCTAAC 60.883 63.158 5.56 0.00 42.73 2.34
569 570 1.153647 CGGCTCGGTGATGCTAACA 60.154 57.895 0.00 0.00 0.00 2.41
579 580 3.437049 GGTGATGCTAACACACTTCCTTC 59.563 47.826 0.00 0.00 39.65 3.46
667 668 4.649088 AAAAAGAAAAACACTCCCCGAG 57.351 40.909 0.00 0.00 35.52 4.63
732 733 0.976073 CGGTACCCACCTGTCATCCT 60.976 60.000 6.25 0.00 43.33 3.24
747 748 2.846206 TCATCCTAATGGTCAGTGCCTT 59.154 45.455 5.39 0.00 33.42 4.35
748 749 2.787473 TCCTAATGGTCAGTGCCTTG 57.213 50.000 5.39 0.00 34.23 3.61
751 752 2.012673 CTAATGGTCAGTGCCTTGAGC 58.987 52.381 9.14 9.14 43.91 4.26
761 762 3.042481 GCCTTGAGCAAAGAACCCT 57.958 52.632 0.97 0.00 42.97 4.34
762 763 0.884514 GCCTTGAGCAAAGAACCCTC 59.115 55.000 0.97 0.00 42.97 4.30
765 766 2.958355 CCTTGAGCAAAGAACCCTCAAA 59.042 45.455 4.20 0.00 42.88 2.69
766 767 3.005155 CCTTGAGCAAAGAACCCTCAAAG 59.995 47.826 4.20 0.00 42.88 2.77
767 768 3.297134 TGAGCAAAGAACCCTCAAAGT 57.703 42.857 0.00 0.00 33.05 2.66
768 769 2.951642 TGAGCAAAGAACCCTCAAAGTG 59.048 45.455 0.00 0.00 33.05 3.16
769 770 2.294512 GAGCAAAGAACCCTCAAAGTGG 59.705 50.000 0.00 0.00 0.00 4.00
784 785 1.003233 GTGGGACTGAGCCAGAACC 60.003 63.158 8.91 9.86 35.18 3.62
793 794 4.097361 GCCAGAACCCGGTCCTCC 62.097 72.222 0.00 0.00 0.00 4.30
796 797 1.758592 CAGAACCCGGTCCTCCAAA 59.241 57.895 0.00 0.00 0.00 3.28
798 799 0.400594 AGAACCCGGTCCTCCAAAAG 59.599 55.000 0.00 0.00 0.00 2.27
803 804 2.158370 ACCCGGTCCTCCAAAAGAAAAT 60.158 45.455 0.00 0.00 0.00 1.82
805 806 4.264217 ACCCGGTCCTCCAAAAGAAAATAT 60.264 41.667 0.00 0.00 0.00 1.28
807 808 6.068670 CCCGGTCCTCCAAAAGAAAATATAT 58.931 40.000 0.00 0.00 0.00 0.86
808 809 7.147266 ACCCGGTCCTCCAAAAGAAAATATATA 60.147 37.037 0.00 0.00 0.00 0.86
829 1042 2.690840 ACTGAACCAGAACCCTACTGT 58.309 47.619 0.45 0.00 35.18 3.55
1439 1763 2.733593 GCTGCTCCGACGTTTCGT 60.734 61.111 0.00 0.00 44.28 3.85
1508 1832 0.108186 CATCGCTAGCAAGGTGACCA 60.108 55.000 16.45 0.00 0.00 4.02
1588 1912 4.273257 GAGGCCGCGCTAGAGGAC 62.273 72.222 5.56 0.00 46.80 3.85
1765 2089 5.083533 AGTCTCTTCAGTGGATGATCAAC 57.916 43.478 0.00 0.00 37.89 3.18
1775 2099 2.228582 TGGATGATCAACAAGTTTGGCG 59.771 45.455 0.00 0.00 0.00 5.69
1798 2122 5.098211 GTGCAATCTTAGGCATTTCAACTC 58.902 41.667 0.00 0.00 42.75 3.01
1803 2127 7.678218 GCAATCTTAGGCATTTCAACTCTAGTG 60.678 40.741 0.00 0.00 0.00 2.74
1805 2129 5.483937 TCTTAGGCATTTCAACTCTAGTGGA 59.516 40.000 0.00 0.00 0.00 4.02
1832 2156 3.895232 AGGCATAGTAGGTGAACAGTG 57.105 47.619 0.00 0.00 0.00 3.66
1843 2167 8.918202 AGTAGGTGAACAGTGATTTTTATGAA 57.082 30.769 0.00 0.00 0.00 2.57
1913 2244 4.045636 GAAGCAATTTCGCCCACATATT 57.954 40.909 0.00 0.00 0.00 1.28
1941 2276 6.039717 TGCCAATTTTAGATACAAGAGGATGC 59.960 38.462 0.00 0.00 0.00 3.91
1945 2280 8.636213 CAATTTTAGATACAAGAGGATGCCAAT 58.364 33.333 0.00 0.00 0.00 3.16
1953 2288 6.029346 ACAAGAGGATGCCAATTTTAGTTG 57.971 37.500 0.00 0.00 0.00 3.16
1963 2298 5.931146 TGCCAATTTTAGTTGTAAAGCATGG 59.069 36.000 0.00 0.00 33.88 3.66
1967 2302 7.290118 CAATTTTAGTTGTAAAGCATGGCAAC 58.710 34.615 0.00 0.00 40.83 4.17
1982 2317 2.364970 TGGCAACTTTCTGTTTGGATGG 59.635 45.455 0.00 0.00 36.63 3.51
1991 2326 2.293122 TCTGTTTGGATGGCAAGTTTCG 59.707 45.455 0.00 0.00 0.00 3.46
1992 2327 2.028130 TGTTTGGATGGCAAGTTTCGT 58.972 42.857 0.00 0.00 0.00 3.85
1993 2328 2.428890 TGTTTGGATGGCAAGTTTCGTT 59.571 40.909 0.00 0.00 0.00 3.85
2042 2378 6.200097 GGCAACTTTAGTGTAAAAACATGTGG 59.800 38.462 0.00 0.00 0.00 4.17
2044 2380 7.262048 CAACTTTAGTGTAAAAACATGTGGGT 58.738 34.615 0.00 0.00 0.00 4.51
2052 2388 4.394439 AAAAACATGTGGGTGGTGTTAC 57.606 40.909 0.00 0.00 35.19 2.50
2233 3137 7.998383 ACATATCAGATTAAACAATAGGTGGCA 59.002 33.333 0.00 0.00 0.00 4.92
2235 3139 4.640201 TCAGATTAAACAATAGGTGGCAGC 59.360 41.667 9.02 9.02 0.00 5.25
2260 3166 6.506513 CGTCGCAAGTCTACTCAAAATATGAC 60.507 42.308 0.00 0.00 39.48 3.06
2365 3273 7.714377 AGATTCTTCATGGTGATCAACAGATAC 59.286 37.037 19.98 7.79 0.00 2.24
2377 3289 5.241403 TCAACAGATACAATCCCAAGTGT 57.759 39.130 0.00 0.00 37.49 3.55
2399 3313 7.231722 AGTGTCTCGATAAATAGAGGTATGCTT 59.768 37.037 1.01 0.00 35.34 3.91
2439 3355 7.284944 TCCGAAAAAGTCTTTATAACCCACAAA 59.715 33.333 0.00 0.00 0.00 2.83
2441 3357 9.303537 CGAAAAAGTCTTTATAACCCACAAAAA 57.696 29.630 0.00 0.00 0.00 1.94
2476 3396 6.014840 AGACCGTCTTCAAGGTAGTATTTCAA 60.015 38.462 0.00 0.00 41.51 2.69
2580 3504 9.255029 ACCTTAAAAACTAAATATCTGCACCAT 57.745 29.630 0.00 0.00 0.00 3.55
2675 3641 7.044314 GCAGTTTTGTAGTGATTGTAACAACAC 60.044 37.037 0.00 0.00 34.37 3.32
2684 3650 5.514914 GTGATTGTAACAACACCAACAACAG 59.485 40.000 0.00 0.00 34.89 3.16
2734 3702 9.535270 GAAAGATCAATATACGAAAAGCATAGC 57.465 33.333 0.00 0.00 0.00 2.97
2868 4037 9.047947 ACTCCCTCTGTAAACAAATATAAGAGT 57.952 33.333 0.00 0.00 0.00 3.24
2869 4038 9.319143 CTCCCTCTGTAAACAAATATAAGAGTG 57.681 37.037 0.00 0.00 0.00 3.51
2871 4040 9.449719 CCCTCTGTAAACAAATATAAGAGTGTT 57.550 33.333 0.00 0.00 35.77 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.664677 ATCATCGCGGCGGTAGGC 62.665 66.667 23.46 0.00 42.51 3.93
33 34 2.734723 CATCATCGCGGCGGTAGG 60.735 66.667 23.46 5.92 0.00 3.18
34 35 1.730902 CTCATCATCGCGGCGGTAG 60.731 63.158 23.46 12.49 0.00 3.18
35 36 2.335011 CTCATCATCGCGGCGGTA 59.665 61.111 23.46 4.05 0.00 4.02
37 38 4.957684 AGCTCATCATCGCGGCGG 62.958 66.667 23.46 7.47 0.00 6.13
38 39 3.401411 GAGCTCATCATCGCGGCG 61.401 66.667 17.70 17.70 0.00 6.46
39 40 3.040763 GGAGCTCATCATCGCGGC 61.041 66.667 17.19 0.00 0.00 6.53
40 41 1.372748 GAGGAGCTCATCATCGCGG 60.373 63.158 22.87 0.00 0.00 6.46
41 42 0.249197 TTGAGGAGCTCATCATCGCG 60.249 55.000 29.73 0.00 41.73 5.87
42 43 1.500108 CTTGAGGAGCTCATCATCGC 58.500 55.000 29.73 7.75 41.73 4.58
53 54 4.270245 ACAGAAGAAAGAGCTTGAGGAG 57.730 45.455 0.00 0.00 0.00 3.69
54 55 4.384056 CAACAGAAGAAAGAGCTTGAGGA 58.616 43.478 0.00 0.00 0.00 3.71
55 56 3.058363 GCAACAGAAGAAAGAGCTTGAGG 60.058 47.826 0.00 0.00 0.00 3.86
56 57 3.814283 AGCAACAGAAGAAAGAGCTTGAG 59.186 43.478 0.00 0.00 0.00 3.02
57 58 3.562973 CAGCAACAGAAGAAAGAGCTTGA 59.437 43.478 0.00 0.00 0.00 3.02
58 59 3.304525 CCAGCAACAGAAGAAAGAGCTTG 60.305 47.826 0.00 0.00 0.00 4.01
59 60 2.883386 CCAGCAACAGAAGAAAGAGCTT 59.117 45.455 0.00 0.00 0.00 3.74
60 61 2.158696 ACCAGCAACAGAAGAAAGAGCT 60.159 45.455 0.00 0.00 0.00 4.09
61 62 2.031333 CACCAGCAACAGAAGAAAGAGC 60.031 50.000 0.00 0.00 0.00 4.09
62 63 2.551459 CCACCAGCAACAGAAGAAAGAG 59.449 50.000 0.00 0.00 0.00 2.85
63 64 2.575532 CCACCAGCAACAGAAGAAAGA 58.424 47.619 0.00 0.00 0.00 2.52
64 65 1.610522 CCCACCAGCAACAGAAGAAAG 59.389 52.381 0.00 0.00 0.00 2.62
65 66 1.064017 ACCCACCAGCAACAGAAGAAA 60.064 47.619 0.00 0.00 0.00 2.52
66 67 0.550914 ACCCACCAGCAACAGAAGAA 59.449 50.000 0.00 0.00 0.00 2.52
67 68 0.179020 CACCCACCAGCAACAGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
68 69 0.179020 TCACCCACCAGCAACAGAAG 60.179 55.000 0.00 0.00 0.00 2.85
69 70 0.478072 ATCACCCACCAGCAACAGAA 59.522 50.000 0.00 0.00 0.00 3.02
70 71 0.036732 GATCACCCACCAGCAACAGA 59.963 55.000 0.00 0.00 0.00 3.41
71 72 1.300971 CGATCACCCACCAGCAACAG 61.301 60.000 0.00 0.00 0.00 3.16
72 73 1.302431 CGATCACCCACCAGCAACA 60.302 57.895 0.00 0.00 0.00 3.33
73 74 1.298859 GACGATCACCCACCAGCAAC 61.299 60.000 0.00 0.00 0.00 4.17
74 75 1.003839 GACGATCACCCACCAGCAA 60.004 57.895 0.00 0.00 0.00 3.91
75 76 2.662596 GACGATCACCCACCAGCA 59.337 61.111 0.00 0.00 0.00 4.41
76 77 2.509336 CGACGATCACCCACCAGC 60.509 66.667 0.00 0.00 0.00 4.85
77 78 2.509336 GCGACGATCACCCACCAG 60.509 66.667 0.00 0.00 0.00 4.00
78 79 4.077184 GGCGACGATCACCCACCA 62.077 66.667 0.00 0.00 0.00 4.17
79 80 4.077184 TGGCGACGATCACCCACC 62.077 66.667 0.00 0.00 0.00 4.61
80 81 2.813908 GTGGCGACGATCACCCAC 60.814 66.667 0.00 2.00 40.71 4.61
102 103 4.059136 GCTGTACGAGACGCTCAC 57.941 61.111 7.47 0.70 0.00 3.51
128 129 1.554836 TGGAGAACCTCTCTGCAGAG 58.445 55.000 33.73 33.73 46.61 3.35
129 130 3.774144 TGGAGAACCTCTCTGCAGA 57.226 52.632 17.19 17.19 46.61 4.26
132 133 1.473080 GCTGATGGAGAACCTCTCTGC 60.473 57.143 3.81 0.00 42.95 4.26
133 134 2.101249 GAGCTGATGGAGAACCTCTCTG 59.899 54.545 0.00 0.00 42.95 3.35
134 135 2.024080 AGAGCTGATGGAGAACCTCTCT 60.024 50.000 0.00 0.00 42.95 3.10
135 136 2.362077 GAGAGCTGATGGAGAACCTCTC 59.638 54.545 0.00 0.00 42.66 3.20
136 137 2.387757 GAGAGCTGATGGAGAACCTCT 58.612 52.381 0.00 0.00 37.04 3.69
137 138 1.066908 CGAGAGCTGATGGAGAACCTC 59.933 57.143 0.00 0.00 37.04 3.85
138 139 1.110442 CGAGAGCTGATGGAGAACCT 58.890 55.000 0.00 0.00 37.04 3.50
139 140 3.657956 CGAGAGCTGATGGAGAACC 57.342 57.895 0.00 0.00 0.00 3.62
189 190 0.320374 TGGAACATCACCACGGAGAC 59.680 55.000 0.00 0.00 32.03 3.36
190 191 1.052617 TTGGAACATCACCACGGAGA 58.947 50.000 0.00 0.00 39.30 3.71
191 192 1.156736 GTTGGAACATCACCACGGAG 58.843 55.000 0.00 0.00 39.30 4.63
192 193 0.601576 CGTTGGAACATCACCACGGA 60.602 55.000 0.00 0.00 39.30 4.69
193 194 1.866237 CGTTGGAACATCACCACGG 59.134 57.895 0.00 0.00 39.30 4.94
194 195 1.206578 GCGTTGGAACATCACCACG 59.793 57.895 0.00 0.00 39.30 4.94
195 196 0.238289 CTGCGTTGGAACATCACCAC 59.762 55.000 0.00 0.00 39.30 4.16
196 197 1.514678 GCTGCGTTGGAACATCACCA 61.515 55.000 0.00 0.00 39.30 4.17
197 198 1.210155 GCTGCGTTGGAACATCACC 59.790 57.895 0.00 0.00 39.30 4.02
198 199 1.154413 CGCTGCGTTGGAACATCAC 60.154 57.895 14.93 0.00 39.30 3.06
199 200 1.596752 ACGCTGCGTTGGAACATCA 60.597 52.632 23.57 0.00 36.35 3.07
200 201 1.154413 CACGCTGCGTTGGAACATC 60.154 57.895 26.77 0.00 38.32 3.06
201 202 2.616330 CCACGCTGCGTTGGAACAT 61.616 57.895 26.77 0.00 38.32 2.71
202 203 3.276091 CCACGCTGCGTTGGAACA 61.276 61.111 26.77 0.00 38.32 3.18
203 204 2.325082 ATCCACGCTGCGTTGGAAC 61.325 57.895 33.20 0.00 39.18 3.62
204 205 2.031919 ATCCACGCTGCGTTGGAA 59.968 55.556 33.20 22.94 39.18 3.53
205 206 2.741985 CATCCACGCTGCGTTGGA 60.742 61.111 32.36 32.36 38.32 3.53
206 207 3.803082 CCATCCACGCTGCGTTGG 61.803 66.667 26.77 25.46 38.32 3.77
207 208 3.049674 ACCATCCACGCTGCGTTG 61.050 61.111 26.77 22.46 38.32 4.10
208 209 3.049674 CACCATCCACGCTGCGTT 61.050 61.111 26.77 8.72 38.32 4.84
210 211 4.758251 TCCACCATCCACGCTGCG 62.758 66.667 21.91 21.91 0.00 5.18
211 212 1.523154 TTTTCCACCATCCACGCTGC 61.523 55.000 0.00 0.00 0.00 5.25
212 213 0.958091 TTTTTCCACCATCCACGCTG 59.042 50.000 0.00 0.00 0.00 5.18
213 214 1.923356 ATTTTTCCACCATCCACGCT 58.077 45.000 0.00 0.00 0.00 5.07
214 215 2.736192 CAAATTTTTCCACCATCCACGC 59.264 45.455 0.00 0.00 0.00 5.34
215 216 3.324993 CCAAATTTTTCCACCATCCACG 58.675 45.455 0.00 0.00 0.00 4.94
216 217 3.073678 GCCAAATTTTTCCACCATCCAC 58.926 45.455 0.00 0.00 0.00 4.02
217 218 2.978278 AGCCAAATTTTTCCACCATCCA 59.022 40.909 0.00 0.00 0.00 3.41
218 219 3.261643 AGAGCCAAATTTTTCCACCATCC 59.738 43.478 0.00 0.00 0.00 3.51
219 220 4.021192 TCAGAGCCAAATTTTTCCACCATC 60.021 41.667 0.00 0.00 0.00 3.51
220 221 3.903090 TCAGAGCCAAATTTTTCCACCAT 59.097 39.130 0.00 0.00 0.00 3.55
221 222 3.303938 TCAGAGCCAAATTTTTCCACCA 58.696 40.909 0.00 0.00 0.00 4.17
222 223 3.321968 ACTCAGAGCCAAATTTTTCCACC 59.678 43.478 0.00 0.00 0.00 4.61
223 224 4.590850 ACTCAGAGCCAAATTTTTCCAC 57.409 40.909 0.00 0.00 0.00 4.02
224 225 4.522789 GGTACTCAGAGCCAAATTTTTCCA 59.477 41.667 0.00 0.00 0.00 3.53
225 226 4.522789 TGGTACTCAGAGCCAAATTTTTCC 59.477 41.667 0.00 0.00 0.00 3.13
226 227 5.705609 TGGTACTCAGAGCCAAATTTTTC 57.294 39.130 0.00 0.00 0.00 2.29
227 228 6.670695 ATTGGTACTCAGAGCCAAATTTTT 57.329 33.333 12.16 0.00 44.26 1.94
228 229 6.041979 ACAATTGGTACTCAGAGCCAAATTTT 59.958 34.615 10.83 2.29 44.26 1.82
229 230 5.539955 ACAATTGGTACTCAGAGCCAAATTT 59.460 36.000 10.83 2.86 44.26 1.82
230 231 5.079643 ACAATTGGTACTCAGAGCCAAATT 58.920 37.500 10.83 5.67 44.26 1.82
231 232 4.666512 ACAATTGGTACTCAGAGCCAAAT 58.333 39.130 10.83 3.29 44.26 2.32
232 233 4.098914 ACAATTGGTACTCAGAGCCAAA 57.901 40.909 10.83 0.00 44.26 3.28
233 234 3.788227 ACAATTGGTACTCAGAGCCAA 57.212 42.857 10.83 10.90 45.02 4.52
234 235 3.788227 AACAATTGGTACTCAGAGCCA 57.212 42.857 10.83 0.00 0.00 4.75
235 236 3.623510 GCTAACAATTGGTACTCAGAGCC 59.376 47.826 10.83 0.00 0.00 4.70
236 237 4.253685 TGCTAACAATTGGTACTCAGAGC 58.746 43.478 10.83 8.51 0.00 4.09
237 238 5.163953 CGTTGCTAACAATTGGTACTCAGAG 60.164 44.000 10.83 0.00 38.27 3.35
238 239 4.688879 CGTTGCTAACAATTGGTACTCAGA 59.311 41.667 10.83 0.00 38.27 3.27
239 240 4.142902 CCGTTGCTAACAATTGGTACTCAG 60.143 45.833 10.83 0.00 38.27 3.35
240 241 3.749088 CCGTTGCTAACAATTGGTACTCA 59.251 43.478 10.83 3.65 38.27 3.41
241 242 3.126343 CCCGTTGCTAACAATTGGTACTC 59.874 47.826 10.83 0.95 38.27 2.59
242 243 3.078837 CCCGTTGCTAACAATTGGTACT 58.921 45.455 10.83 0.00 38.27 2.73
243 244 2.414957 GCCCGTTGCTAACAATTGGTAC 60.415 50.000 10.83 3.52 38.27 3.34
244 245 1.813786 GCCCGTTGCTAACAATTGGTA 59.186 47.619 10.83 6.73 38.27 3.25
245 246 0.601057 GCCCGTTGCTAACAATTGGT 59.399 50.000 10.83 5.65 38.27 3.67
246 247 3.416955 GCCCGTTGCTAACAATTGG 57.583 52.632 10.83 0.00 38.27 3.16
256 257 0.032815 GAGAGATCCTAGCCCGTTGC 59.967 60.000 0.00 0.00 41.71 4.17
257 258 1.611491 GAGAGAGATCCTAGCCCGTTG 59.389 57.143 0.00 0.00 0.00 4.10
258 259 1.497286 AGAGAGAGATCCTAGCCCGTT 59.503 52.381 0.00 0.00 0.00 4.44
259 260 1.145571 AGAGAGAGATCCTAGCCCGT 58.854 55.000 0.00 0.00 0.00 5.28
260 261 3.644966 ATAGAGAGAGATCCTAGCCCG 57.355 52.381 0.00 0.00 0.00 6.13
261 262 4.705023 GTCAATAGAGAGAGATCCTAGCCC 59.295 50.000 0.00 0.00 0.00 5.19
262 263 4.394920 CGTCAATAGAGAGAGATCCTAGCC 59.605 50.000 0.00 0.00 0.00 3.93
263 264 5.242434 TCGTCAATAGAGAGAGATCCTAGC 58.758 45.833 0.00 0.00 0.00 3.42
264 265 6.708502 TGTTCGTCAATAGAGAGAGATCCTAG 59.291 42.308 0.00 0.00 0.00 3.02
265 266 6.592870 TGTTCGTCAATAGAGAGAGATCCTA 58.407 40.000 0.00 0.00 0.00 2.94
266 267 5.441500 TGTTCGTCAATAGAGAGAGATCCT 58.558 41.667 0.00 0.00 0.00 3.24
267 268 5.759506 TGTTCGTCAATAGAGAGAGATCC 57.240 43.478 0.00 0.00 0.00 3.36
268 269 6.855914 GTGATGTTCGTCAATAGAGAGAGATC 59.144 42.308 0.00 0.00 0.00 2.75
269 270 6.545666 AGTGATGTTCGTCAATAGAGAGAGAT 59.454 38.462 0.00 0.00 0.00 2.75
270 271 5.883115 AGTGATGTTCGTCAATAGAGAGAGA 59.117 40.000 0.00 0.00 0.00 3.10
271 272 6.130298 AGTGATGTTCGTCAATAGAGAGAG 57.870 41.667 0.00 0.00 0.00 3.20
272 273 5.648092 TGAGTGATGTTCGTCAATAGAGAGA 59.352 40.000 0.00 0.00 0.00 3.10
273 274 5.884771 TGAGTGATGTTCGTCAATAGAGAG 58.115 41.667 0.00 0.00 0.00 3.20
274 275 5.648092 TCTGAGTGATGTTCGTCAATAGAGA 59.352 40.000 0.00 0.00 0.00 3.10
275 276 5.884771 TCTGAGTGATGTTCGTCAATAGAG 58.115 41.667 0.00 0.00 0.00 2.43
276 277 5.897377 TCTGAGTGATGTTCGTCAATAGA 57.103 39.130 0.00 0.00 0.00 1.98
277 278 6.417339 CAGATCTGAGTGATGTTCGTCAATAG 59.583 42.308 18.34 0.00 35.14 1.73
278 279 6.127619 ACAGATCTGAGTGATGTTCGTCAATA 60.128 38.462 29.27 0.00 35.14 1.90
279 280 5.107824 CAGATCTGAGTGATGTTCGTCAAT 58.892 41.667 18.34 0.00 35.14 2.57
280 281 4.021981 ACAGATCTGAGTGATGTTCGTCAA 60.022 41.667 29.27 0.00 35.14 3.18
281 282 3.507622 ACAGATCTGAGTGATGTTCGTCA 59.492 43.478 29.27 0.00 35.14 4.35
282 283 4.103365 ACAGATCTGAGTGATGTTCGTC 57.897 45.455 29.27 0.00 35.14 4.20
283 284 4.439426 GCTACAGATCTGAGTGATGTTCGT 60.439 45.833 29.27 4.55 35.14 3.85
284 285 4.041049 GCTACAGATCTGAGTGATGTTCG 58.959 47.826 29.27 1.51 35.14 3.95
285 286 5.067674 AGAGCTACAGATCTGAGTGATGTTC 59.932 44.000 29.27 16.30 39.62 3.18
286 287 4.955450 AGAGCTACAGATCTGAGTGATGTT 59.045 41.667 29.27 6.58 39.62 2.71
287 288 4.535781 AGAGCTACAGATCTGAGTGATGT 58.464 43.478 29.27 12.13 39.62 3.06
288 289 6.822667 ATAGAGCTACAGATCTGAGTGATG 57.177 41.667 29.27 12.05 41.41 3.07
289 290 7.308529 CGAAATAGAGCTACAGATCTGAGTGAT 60.309 40.741 29.27 15.86 41.41 3.06
290 291 6.017523 CGAAATAGAGCTACAGATCTGAGTGA 60.018 42.308 29.27 9.99 41.41 3.41
291 292 6.017523 TCGAAATAGAGCTACAGATCTGAGTG 60.018 42.308 29.27 17.49 41.41 3.51
292 293 6.058833 TCGAAATAGAGCTACAGATCTGAGT 58.941 40.000 29.27 10.40 41.41 3.41
293 294 6.552859 TCGAAATAGAGCTACAGATCTGAG 57.447 41.667 29.27 20.52 41.41 3.35
294 295 6.944234 TTCGAAATAGAGCTACAGATCTGA 57.056 37.500 29.27 11.66 41.41 3.27
295 296 8.586570 AAATTCGAAATAGAGCTACAGATCTG 57.413 34.615 21.37 21.37 41.41 2.90
296 297 9.685828 GTAAATTCGAAATAGAGCTACAGATCT 57.314 33.333 0.00 2.17 43.91 2.75
297 298 9.464714 TGTAAATTCGAAATAGAGCTACAGATC 57.535 33.333 0.00 0.00 0.00 2.75
298 299 9.817809 TTGTAAATTCGAAATAGAGCTACAGAT 57.182 29.630 0.00 0.00 0.00 2.90
299 300 9.302345 CTTGTAAATTCGAAATAGAGCTACAGA 57.698 33.333 0.00 0.00 0.00 3.41
300 301 8.058915 GCTTGTAAATTCGAAATAGAGCTACAG 58.941 37.037 0.00 0.00 0.00 2.74
301 302 7.011109 GGCTTGTAAATTCGAAATAGAGCTACA 59.989 37.037 0.00 0.00 0.00 2.74
302 303 7.345943 GGCTTGTAAATTCGAAATAGAGCTAC 58.654 38.462 0.00 0.00 0.00 3.58
303 304 6.200286 CGGCTTGTAAATTCGAAATAGAGCTA 59.800 38.462 0.00 0.00 0.00 3.32
304 305 5.006746 CGGCTTGTAAATTCGAAATAGAGCT 59.993 40.000 0.00 0.00 0.00 4.09
305 306 5.198274 CGGCTTGTAAATTCGAAATAGAGC 58.802 41.667 0.00 10.55 0.00 4.09
306 307 5.277345 CCCGGCTTGTAAATTCGAAATAGAG 60.277 44.000 0.00 1.84 0.00 2.43
307 308 4.573201 CCCGGCTTGTAAATTCGAAATAGA 59.427 41.667 0.00 0.00 0.00 1.98
308 309 4.573201 TCCCGGCTTGTAAATTCGAAATAG 59.427 41.667 0.00 0.00 0.00 1.73
309 310 4.515361 TCCCGGCTTGTAAATTCGAAATA 58.485 39.130 0.00 0.00 0.00 1.40
310 311 3.349022 TCCCGGCTTGTAAATTCGAAAT 58.651 40.909 0.00 0.00 0.00 2.17
311 312 2.745281 CTCCCGGCTTGTAAATTCGAAA 59.255 45.455 0.00 0.00 0.00 3.46
312 313 2.352388 CTCCCGGCTTGTAAATTCGAA 58.648 47.619 0.00 0.00 0.00 3.71
313 314 1.406341 CCTCCCGGCTTGTAAATTCGA 60.406 52.381 0.00 0.00 0.00 3.71
314 315 1.014352 CCTCCCGGCTTGTAAATTCG 58.986 55.000 0.00 0.00 0.00 3.34
315 316 2.413310 TCCTCCCGGCTTGTAAATTC 57.587 50.000 0.00 0.00 0.00 2.17
316 317 2.620627 CCTTCCTCCCGGCTTGTAAATT 60.621 50.000 0.00 0.00 0.00 1.82
317 318 1.064685 CCTTCCTCCCGGCTTGTAAAT 60.065 52.381 0.00 0.00 0.00 1.40
318 319 0.326927 CCTTCCTCCCGGCTTGTAAA 59.673 55.000 0.00 0.00 0.00 2.01
319 320 0.545787 TCCTTCCTCCCGGCTTGTAA 60.546 55.000 0.00 0.00 0.00 2.41
320 321 0.976073 CTCCTTCCTCCCGGCTTGTA 60.976 60.000 0.00 0.00 0.00 2.41
321 322 2.203938 TCCTTCCTCCCGGCTTGT 60.204 61.111 0.00 0.00 0.00 3.16
322 323 2.586792 CTCCTTCCTCCCGGCTTG 59.413 66.667 0.00 0.00 0.00 4.01
323 324 2.689034 CCTCCTTCCTCCCGGCTT 60.689 66.667 0.00 0.00 0.00 4.35
324 325 3.254035 TTCCTCCTTCCTCCCGGCT 62.254 63.158 0.00 0.00 0.00 5.52
325 326 2.687566 TTCCTCCTTCCTCCCGGC 60.688 66.667 0.00 0.00 0.00 6.13
326 327 1.001760 TCTTCCTCCTTCCTCCCGG 59.998 63.158 0.00 0.00 0.00 5.73
327 328 0.033011 TCTCTTCCTCCTTCCTCCCG 60.033 60.000 0.00 0.00 0.00 5.14
328 329 1.007842 ACTCTCTTCCTCCTTCCTCCC 59.992 57.143 0.00 0.00 0.00 4.30
329 330 2.543037 ACTCTCTTCCTCCTTCCTCC 57.457 55.000 0.00 0.00 0.00 4.30
330 331 4.345854 TGTAACTCTCTTCCTCCTTCCTC 58.654 47.826 0.00 0.00 0.00 3.71
331 332 4.405756 TGTAACTCTCTTCCTCCTTCCT 57.594 45.455 0.00 0.00 0.00 3.36
332 333 4.621983 GCTTGTAACTCTCTTCCTCCTTCC 60.622 50.000 0.00 0.00 0.00 3.46
333 334 4.021016 TGCTTGTAACTCTCTTCCTCCTTC 60.021 45.833 0.00 0.00 0.00 3.46
334 335 3.904339 TGCTTGTAACTCTCTTCCTCCTT 59.096 43.478 0.00 0.00 0.00 3.36
335 336 3.511477 TGCTTGTAACTCTCTTCCTCCT 58.489 45.455 0.00 0.00 0.00 3.69
336 337 3.963428 TGCTTGTAACTCTCTTCCTCC 57.037 47.619 0.00 0.00 0.00 4.30
337 338 4.150804 CGTTTGCTTGTAACTCTCTTCCTC 59.849 45.833 0.00 0.00 0.00 3.71
338 339 4.058817 CGTTTGCTTGTAACTCTCTTCCT 58.941 43.478 0.00 0.00 0.00 3.36
339 340 3.186613 CCGTTTGCTTGTAACTCTCTTCC 59.813 47.826 0.00 0.00 0.00 3.46
340 341 3.364068 GCCGTTTGCTTGTAACTCTCTTC 60.364 47.826 0.00 0.00 36.87 2.87
341 342 2.548480 GCCGTTTGCTTGTAACTCTCTT 59.452 45.455 0.00 0.00 36.87 2.85
342 343 2.143925 GCCGTTTGCTTGTAACTCTCT 58.856 47.619 0.00 0.00 36.87 3.10
343 344 1.136336 CGCCGTTTGCTTGTAACTCTC 60.136 52.381 0.00 0.00 38.05 3.20
344 345 0.865769 CGCCGTTTGCTTGTAACTCT 59.134 50.000 0.00 0.00 38.05 3.24
345 346 0.110373 CCGCCGTTTGCTTGTAACTC 60.110 55.000 0.00 0.00 38.05 3.01
346 347 0.533308 TCCGCCGTTTGCTTGTAACT 60.533 50.000 0.00 0.00 38.05 2.24
347 348 0.385098 GTCCGCCGTTTGCTTGTAAC 60.385 55.000 0.00 0.00 38.05 2.50
348 349 0.533308 AGTCCGCCGTTTGCTTGTAA 60.533 50.000 0.00 0.00 38.05 2.41
349 350 1.070105 AGTCCGCCGTTTGCTTGTA 59.930 52.632 0.00 0.00 38.05 2.41
350 351 2.203153 AGTCCGCCGTTTGCTTGT 60.203 55.556 0.00 0.00 38.05 3.16
351 352 2.252260 CAGTCCGCCGTTTGCTTG 59.748 61.111 0.00 0.00 38.05 4.01
352 353 3.660111 GCAGTCCGCCGTTTGCTT 61.660 61.111 0.00 0.00 38.05 3.91
363 364 2.594592 AGTTTGGCACGGCAGTCC 60.595 61.111 0.00 0.00 0.00 3.85
364 365 2.639286 CAGTTTGGCACGGCAGTC 59.361 61.111 0.00 0.00 0.00 3.51
365 366 2.906897 CCAGTTTGGCACGGCAGT 60.907 61.111 0.00 0.00 0.00 4.40
374 375 2.359975 GAGGGTCGGCCAGTTTGG 60.360 66.667 9.07 0.00 41.55 3.28
375 376 1.966451 GTGAGGGTCGGCCAGTTTG 60.966 63.158 9.07 0.00 36.17 2.93
376 377 1.990160 TTGTGAGGGTCGGCCAGTTT 61.990 55.000 9.07 0.00 36.17 2.66
377 378 2.397413 CTTGTGAGGGTCGGCCAGTT 62.397 60.000 9.07 0.00 36.17 3.16
378 379 2.847234 TTGTGAGGGTCGGCCAGT 60.847 61.111 9.07 0.00 36.17 4.00
379 380 2.046892 CTTGTGAGGGTCGGCCAG 60.047 66.667 9.07 0.00 36.17 4.85
380 381 3.636231 CCTTGTGAGGGTCGGCCA 61.636 66.667 9.07 0.00 39.55 5.36
381 382 2.804828 CTTCCTTGTGAGGGTCGGCC 62.805 65.000 0.00 0.00 43.72 6.13
382 383 1.376037 CTTCCTTGTGAGGGTCGGC 60.376 63.158 0.00 0.00 43.72 5.54
383 384 1.376037 GCTTCCTTGTGAGGGTCGG 60.376 63.158 0.00 0.00 43.72 4.79
384 385 0.671781 CAGCTTCCTTGTGAGGGTCG 60.672 60.000 0.00 0.00 43.72 4.79
385 386 0.957888 GCAGCTTCCTTGTGAGGGTC 60.958 60.000 0.00 0.00 43.72 4.46
386 387 1.073897 GCAGCTTCCTTGTGAGGGT 59.926 57.895 0.00 0.00 43.72 4.34
387 388 1.676967 GGCAGCTTCCTTGTGAGGG 60.677 63.158 0.00 0.00 43.72 4.30
388 389 1.676967 GGGCAGCTTCCTTGTGAGG 60.677 63.158 1.39 0.00 45.02 3.86
389 390 0.676151 GAGGGCAGCTTCCTTGTGAG 60.676 60.000 1.39 0.00 34.21 3.51
390 391 1.376466 GAGGGCAGCTTCCTTGTGA 59.624 57.895 1.39 0.00 34.21 3.58
391 392 1.676967 GGAGGGCAGCTTCCTTGTG 60.677 63.158 1.39 0.00 34.21 3.33
392 393 1.849823 AGGAGGGCAGCTTCCTTGT 60.850 57.895 11.85 0.00 40.96 3.16
393 394 3.085223 AGGAGGGCAGCTTCCTTG 58.915 61.111 11.85 0.00 40.96 3.61
394 395 3.928584 AAGGAGGGCAGCTTCCTT 58.071 55.556 19.94 19.94 46.40 3.36
395 396 1.601248 AATAAGGAGGGCAGCTTCCT 58.399 50.000 11.85 11.85 45.65 3.36
396 397 2.443958 AAATAAGGAGGGCAGCTTCC 57.556 50.000 8.07 8.07 0.00 3.46
397 398 4.075682 GGATAAATAAGGAGGGCAGCTTC 58.924 47.826 0.00 0.00 0.00 3.86
398 399 3.724209 AGGATAAATAAGGAGGGCAGCTT 59.276 43.478 0.00 0.00 0.00 3.74
399 400 3.331120 AGGATAAATAAGGAGGGCAGCT 58.669 45.455 0.00 0.00 0.00 4.24
400 401 3.797559 AGGATAAATAAGGAGGGCAGC 57.202 47.619 0.00 0.00 0.00 5.25
401 402 4.846940 AGGTAGGATAAATAAGGAGGGCAG 59.153 45.833 0.00 0.00 0.00 4.85
402 403 4.839589 AGGTAGGATAAATAAGGAGGGCA 58.160 43.478 0.00 0.00 0.00 5.36
403 404 4.844655 TGAGGTAGGATAAATAAGGAGGGC 59.155 45.833 0.00 0.00 0.00 5.19
404 405 6.069963 CCATGAGGTAGGATAAATAAGGAGGG 60.070 46.154 0.00 0.00 0.00 4.30
405 406 6.951971 CCATGAGGTAGGATAAATAAGGAGG 58.048 44.000 0.00 0.00 0.00 4.30
422 423 1.396653 GCAAGGAATGGACCATGAGG 58.603 55.000 8.02 0.00 42.21 3.86
423 424 1.341285 TGGCAAGGAATGGACCATGAG 60.341 52.381 8.02 0.00 31.29 2.90
424 425 0.703488 TGGCAAGGAATGGACCATGA 59.297 50.000 8.02 0.00 31.29 3.07
425 426 1.108776 CTGGCAAGGAATGGACCATG 58.891 55.000 8.02 0.00 0.00 3.66
426 427 0.685458 GCTGGCAAGGAATGGACCAT 60.685 55.000 0.00 0.00 0.00 3.55
427 428 1.304381 GCTGGCAAGGAATGGACCA 60.304 57.895 0.00 0.00 0.00 4.02
428 429 2.409870 CGCTGGCAAGGAATGGACC 61.410 63.158 0.00 0.00 0.00 4.46
429 430 0.392461 TACGCTGGCAAGGAATGGAC 60.392 55.000 0.00 0.00 0.00 4.02
430 431 0.107703 CTACGCTGGCAAGGAATGGA 60.108 55.000 0.00 0.00 0.00 3.41
431 432 1.718757 GCTACGCTGGCAAGGAATGG 61.719 60.000 0.00 0.00 0.00 3.16
432 433 1.723870 GCTACGCTGGCAAGGAATG 59.276 57.895 0.00 0.00 0.00 2.67
433 434 1.815421 CGCTACGCTGGCAAGGAAT 60.815 57.895 0.00 0.00 0.00 3.01
434 435 2.434185 CGCTACGCTGGCAAGGAA 60.434 61.111 0.00 0.00 0.00 3.36
452 453 4.552365 ATCAGGCGCCCATCCACG 62.552 66.667 26.15 2.92 0.00 4.94
453 454 2.592861 GATCAGGCGCCCATCCAC 60.593 66.667 26.15 6.50 0.00 4.02
454 455 3.877450 GGATCAGGCGCCCATCCA 61.877 66.667 35.04 14.72 36.78 3.41
455 456 3.543536 GAGGATCAGGCGCCCATCC 62.544 68.421 33.91 33.91 37.01 3.51
456 457 2.031768 GAGGATCAGGCGCCCATC 59.968 66.667 26.15 23.92 33.17 3.51
457 458 3.564218 GGAGGATCAGGCGCCCAT 61.564 66.667 26.15 16.45 36.25 4.00
481 482 4.760047 CTTCCACTGACGCCGGGG 62.760 72.222 18.33 18.33 0.00 5.73
482 483 3.691342 TCTTCCACTGACGCCGGG 61.691 66.667 2.18 0.00 0.00 5.73
483 484 2.432628 GTCTTCCACTGACGCCGG 60.433 66.667 0.00 0.00 0.00 6.13
484 485 2.432628 GGTCTTCCACTGACGCCG 60.433 66.667 0.00 0.00 35.45 6.46
485 486 0.951040 CAAGGTCTTCCACTGACGCC 60.951 60.000 0.00 0.00 35.45 5.68
486 487 0.951040 CCAAGGTCTTCCACTGACGC 60.951 60.000 0.00 0.00 35.45 5.19
487 488 0.951040 GCCAAGGTCTTCCACTGACG 60.951 60.000 0.00 0.00 35.45 4.35
488 489 0.398318 AGCCAAGGTCTTCCACTGAC 59.602 55.000 0.00 0.00 35.89 3.51
489 490 1.140312 AAGCCAAGGTCTTCCACTGA 58.860 50.000 0.00 0.00 35.89 3.41
490 491 1.242076 CAAGCCAAGGTCTTCCACTG 58.758 55.000 0.00 0.00 35.89 3.66
491 492 0.846693 ACAAGCCAAGGTCTTCCACT 59.153 50.000 0.00 0.00 35.89 4.00
492 493 1.338020 CAACAAGCCAAGGTCTTCCAC 59.662 52.381 0.00 0.00 35.89 4.02
493 494 1.214175 TCAACAAGCCAAGGTCTTCCA 59.786 47.619 0.00 0.00 35.89 3.53
494 495 1.609072 GTCAACAAGCCAAGGTCTTCC 59.391 52.381 0.00 0.00 0.00 3.46
495 496 2.291741 CAGTCAACAAGCCAAGGTCTTC 59.708 50.000 0.00 0.00 0.00 2.87
496 497 2.301346 CAGTCAACAAGCCAAGGTCTT 58.699 47.619 0.00 0.00 0.00 3.01
497 498 1.477558 CCAGTCAACAAGCCAAGGTCT 60.478 52.381 0.00 0.00 0.00 3.85
498 499 0.954452 CCAGTCAACAAGCCAAGGTC 59.046 55.000 0.00 0.00 0.00 3.85
499 500 0.468029 CCCAGTCAACAAGCCAAGGT 60.468 55.000 0.00 0.00 0.00 3.50
500 501 0.468029 ACCCAGTCAACAAGCCAAGG 60.468 55.000 0.00 0.00 0.00 3.61
501 502 0.954452 GACCCAGTCAACAAGCCAAG 59.046 55.000 0.00 0.00 32.09 3.61
502 503 0.550914 AGACCCAGTCAACAAGCCAA 59.449 50.000 0.00 0.00 34.60 4.52
503 504 0.550914 AAGACCCAGTCAACAAGCCA 59.449 50.000 0.00 0.00 34.60 4.75
504 505 0.954452 CAAGACCCAGTCAACAAGCC 59.046 55.000 0.00 0.00 34.60 4.35
505 506 0.954452 CCAAGACCCAGTCAACAAGC 59.046 55.000 0.00 0.00 34.60 4.01
506 507 0.954452 GCCAAGACCCAGTCAACAAG 59.046 55.000 0.00 0.00 34.60 3.16
507 508 0.550914 AGCCAAGACCCAGTCAACAA 59.449 50.000 0.00 0.00 34.60 2.83
508 509 0.179020 CAGCCAAGACCCAGTCAACA 60.179 55.000 0.00 0.00 34.60 3.33
509 510 1.518903 GCAGCCAAGACCCAGTCAAC 61.519 60.000 0.00 0.00 34.60 3.18
510 511 1.228245 GCAGCCAAGACCCAGTCAA 60.228 57.895 0.00 0.00 34.60 3.18
511 512 2.431683 GCAGCCAAGACCCAGTCA 59.568 61.111 0.00 0.00 34.60 3.41
512 513 2.360475 GGCAGCCAAGACCCAGTC 60.360 66.667 6.55 0.00 0.00 3.51
513 514 3.971702 GGGCAGCCAAGACCCAGT 61.972 66.667 15.19 0.00 43.64 4.00
514 515 3.655211 AGGGCAGCCAAGACCCAG 61.655 66.667 15.19 0.00 46.88 4.45
515 516 3.970410 CAGGGCAGCCAAGACCCA 61.970 66.667 15.19 0.00 46.88 4.51
516 517 4.748144 CCAGGGCAGCCAAGACCC 62.748 72.222 15.19 0.00 44.62 4.46
525 526 4.864334 GGATGACGGCCAGGGCAG 62.864 72.222 14.59 10.97 44.11 4.85
527 528 4.554036 GAGGATGACGGCCAGGGC 62.554 72.222 2.24 1.81 41.06 5.19
528 529 2.765807 AGAGGATGACGGCCAGGG 60.766 66.667 2.24 0.00 0.00 4.45
529 530 1.043116 TACAGAGGATGACGGCCAGG 61.043 60.000 2.24 0.00 0.00 4.45
530 531 0.824109 TTACAGAGGATGACGGCCAG 59.176 55.000 2.24 0.00 0.00 4.85
531 532 0.535335 GTTACAGAGGATGACGGCCA 59.465 55.000 2.24 0.00 0.00 5.36
532 533 0.179081 GGTTACAGAGGATGACGGCC 60.179 60.000 0.00 0.00 0.00 6.13
533 534 0.527817 CGGTTACAGAGGATGACGGC 60.528 60.000 0.00 0.00 0.00 5.68
534 535 0.102481 CCGGTTACAGAGGATGACGG 59.898 60.000 0.00 0.00 32.58 4.79
535 536 0.527817 GCCGGTTACAGAGGATGACG 60.528 60.000 1.90 0.00 0.00 4.35
536 537 0.824759 AGCCGGTTACAGAGGATGAC 59.175 55.000 1.90 0.00 0.00 3.06
537 538 1.112113 GAGCCGGTTACAGAGGATGA 58.888 55.000 1.90 0.00 0.00 2.92
538 539 0.249073 CGAGCCGGTTACAGAGGATG 60.249 60.000 1.90 0.00 0.00 3.51
539 540 1.392710 CCGAGCCGGTTACAGAGGAT 61.393 60.000 1.90 0.00 42.73 3.24
540 541 2.050350 CCGAGCCGGTTACAGAGGA 61.050 63.158 1.90 0.00 42.73 3.71
541 542 2.494918 CCGAGCCGGTTACAGAGG 59.505 66.667 1.90 0.00 42.73 3.69
551 552 1.153647 TGTTAGCATCACCGAGCCG 60.154 57.895 0.00 0.00 0.00 5.52
552 553 0.391130 TGTGTTAGCATCACCGAGCC 60.391 55.000 0.00 0.00 35.25 4.70
553 554 0.721718 GTGTGTTAGCATCACCGAGC 59.278 55.000 0.00 0.00 35.25 5.03
554 555 2.370281 AGTGTGTTAGCATCACCGAG 57.630 50.000 8.06 0.00 35.25 4.63
555 556 2.611971 GGAAGTGTGTTAGCATCACCGA 60.612 50.000 8.06 0.00 35.25 4.69
556 557 1.732259 GGAAGTGTGTTAGCATCACCG 59.268 52.381 8.06 0.00 35.25 4.94
557 558 3.059352 AGGAAGTGTGTTAGCATCACC 57.941 47.619 8.06 0.00 35.25 4.02
558 559 3.123621 CGAAGGAAGTGTGTTAGCATCAC 59.876 47.826 4.82 4.82 36.48 3.06
559 560 3.244078 ACGAAGGAAGTGTGTTAGCATCA 60.244 43.478 0.00 0.00 0.00 3.07
560 561 3.326747 ACGAAGGAAGTGTGTTAGCATC 58.673 45.455 0.00 0.00 0.00 3.91
561 562 3.402628 ACGAAGGAAGTGTGTTAGCAT 57.597 42.857 0.00 0.00 0.00 3.79
562 563 2.902705 ACGAAGGAAGTGTGTTAGCA 57.097 45.000 0.00 0.00 0.00 3.49
563 564 5.169295 AGATAACGAAGGAAGTGTGTTAGC 58.831 41.667 0.00 0.00 33.05 3.09
564 565 6.310711 GGAAGATAACGAAGGAAGTGTGTTAG 59.689 42.308 0.00 0.00 0.00 2.34
565 566 6.014840 AGGAAGATAACGAAGGAAGTGTGTTA 60.015 38.462 0.00 0.00 0.00 2.41
566 567 4.995487 GGAAGATAACGAAGGAAGTGTGTT 59.005 41.667 0.00 0.00 0.00 3.32
567 568 4.283722 AGGAAGATAACGAAGGAAGTGTGT 59.716 41.667 0.00 0.00 0.00 3.72
568 569 4.822026 AGGAAGATAACGAAGGAAGTGTG 58.178 43.478 0.00 0.00 0.00 3.82
569 570 4.773149 AGAGGAAGATAACGAAGGAAGTGT 59.227 41.667 0.00 0.00 0.00 3.55
579 580 6.549952 AGTACGTTGTTAGAGGAAGATAACG 58.450 40.000 0.00 0.00 43.32 3.18
667 668 1.425428 GTCGTGCTGTTATGCTGGC 59.575 57.895 0.00 0.00 0.00 4.85
732 733 2.113860 GCTCAAGGCACTGACCATTA 57.886 50.000 0.00 0.00 40.86 1.90
747 748 2.951642 CACTTTGAGGGTTCTTTGCTCA 59.048 45.455 0.00 0.00 0.00 4.26
748 749 2.294512 CCACTTTGAGGGTTCTTTGCTC 59.705 50.000 0.00 0.00 0.00 4.26
751 752 2.623416 GTCCCACTTTGAGGGTTCTTTG 59.377 50.000 0.00 0.00 46.82 2.77
760 761 0.397941 TGGCTCAGTCCCACTTTGAG 59.602 55.000 0.00 0.00 40.93 3.02
761 762 0.397941 CTGGCTCAGTCCCACTTTGA 59.602 55.000 0.00 0.00 0.00 2.69
762 763 0.397941 TCTGGCTCAGTCCCACTTTG 59.602 55.000 2.68 0.00 32.61 2.77
765 766 1.484444 GGTTCTGGCTCAGTCCCACT 61.484 60.000 2.68 0.00 32.61 4.00
766 767 1.003233 GGTTCTGGCTCAGTCCCAC 60.003 63.158 2.68 0.00 32.61 4.61
767 768 2.224159 GGGTTCTGGCTCAGTCCCA 61.224 63.158 20.70 0.00 41.79 4.37
768 769 2.671682 GGGTTCTGGCTCAGTCCC 59.328 66.667 15.63 15.63 38.52 4.46
769 770 2.266055 CGGGTTCTGGCTCAGTCC 59.734 66.667 2.68 6.43 32.61 3.85
776 777 4.097361 GGAGGACCGGGTTCTGGC 62.097 72.222 14.13 0.00 0.00 4.85
784 785 8.565416 GTTATATATTTTCTTTTGGAGGACCGG 58.435 37.037 0.00 0.00 39.42 5.28
798 799 9.628500 AGGGTTCTGGTTCAGTTATATATTTTC 57.372 33.333 0.00 0.00 32.61 2.29
803 804 7.842743 ACAGTAGGGTTCTGGTTCAGTTATATA 59.157 37.037 0.00 0.00 37.25 0.86
805 806 6.021030 ACAGTAGGGTTCTGGTTCAGTTATA 58.979 40.000 0.00 0.00 37.25 0.98
807 808 4.228824 ACAGTAGGGTTCTGGTTCAGTTA 58.771 43.478 0.00 0.00 37.25 2.24
808 809 3.046374 ACAGTAGGGTTCTGGTTCAGTT 58.954 45.455 0.00 0.00 37.25 3.16
1334 1652 2.032528 CCCACACACGGTGCAGAT 59.967 61.111 8.30 0.00 46.50 2.90
1439 1763 2.659016 CTCAGAAGCCAGCGACCA 59.341 61.111 0.00 0.00 0.00 4.02
1508 1832 2.433318 GTTGCTCTCTTCCGCGCT 60.433 61.111 5.56 0.00 0.00 5.92
1588 1912 1.904032 GCACCTCTCCTTCTCCAGG 59.096 63.158 0.00 0.00 45.64 4.45
1765 2089 2.138596 AAGATTGCACGCCAAACTTG 57.861 45.000 9.92 0.00 42.68 3.16
1775 2099 5.064441 AGTTGAAATGCCTAAGATTGCAC 57.936 39.130 0.00 0.00 40.88 4.57
1798 2122 4.148838 ACTATGCCTAGCTCTTCCACTAG 58.851 47.826 0.00 0.00 36.45 2.57
1803 2127 3.257127 CACCTACTATGCCTAGCTCTTCC 59.743 52.174 0.00 0.00 0.00 3.46
1805 2129 4.186077 TCACCTACTATGCCTAGCTCTT 57.814 45.455 0.00 0.00 0.00 2.85
1876 2200 2.161410 TGCTTCGTGCCACATGTTTATC 59.839 45.455 0.00 0.00 42.00 1.75
1903 2234 5.641783 AAAATTGGCAAAAATATGTGGGC 57.358 34.783 3.01 0.00 0.00 5.36
1913 2244 8.415950 TCCTCTTGTATCTAAAATTGGCAAAA 57.584 30.769 3.01 0.00 0.00 2.44
1931 2266 6.029346 ACAACTAAAATTGGCATCCTCTTG 57.971 37.500 0.00 0.00 33.63 3.02
1941 2276 5.931146 TGCCATGCTTTACAACTAAAATTGG 59.069 36.000 0.00 0.00 33.63 3.16
1953 2288 4.243007 ACAGAAAGTTGCCATGCTTTAC 57.757 40.909 0.00 0.00 35.35 2.01
1963 2298 2.224018 TGCCATCCAAACAGAAAGTTGC 60.224 45.455 0.00 0.00 41.19 4.17
1967 2302 4.326504 AACTTGCCATCCAAACAGAAAG 57.673 40.909 0.00 0.00 31.94 2.62
2008 2343 3.374678 ACACTAAAGTTGCCGTCGAAAAA 59.625 39.130 0.00 0.00 0.00 1.94
2013 2348 4.455917 TTTTACACTAAAGTTGCCGTCG 57.544 40.909 0.00 0.00 0.00 5.12
2014 2349 5.571277 TGTTTTTACACTAAAGTTGCCGTC 58.429 37.500 0.00 0.00 0.00 4.79
2015 2350 5.564048 TGTTTTTACACTAAAGTTGCCGT 57.436 34.783 0.00 0.00 0.00 5.68
2016 2351 5.974751 ACATGTTTTTACACTAAAGTTGCCG 59.025 36.000 0.00 0.00 0.00 5.69
2017 2352 6.200097 CCACATGTTTTTACACTAAAGTTGCC 59.800 38.462 0.00 0.00 0.00 4.52
2042 2378 2.081462 GTGGCATGTAGTAACACCACC 58.919 52.381 6.93 0.00 42.70 4.61
2044 2380 3.244735 ACATGTGGCATGTAGTAACACCA 60.245 43.478 12.42 0.00 38.78 4.17
2070 2406 0.818040 AAAGGGATGCCGATAACCGC 60.818 55.000 0.00 0.00 36.84 5.68
2072 2408 2.758423 ACAAAAAGGGATGCCGATAACC 59.242 45.455 0.00 0.00 0.00 2.85
2129 2465 7.411486 AGTACTCTGCTTGATAATACTGTGT 57.589 36.000 0.00 0.00 0.00 3.72
2222 3126 2.813179 GCGACGCTGCCACCTATTG 61.813 63.158 13.73 0.00 0.00 1.90
2233 3137 0.596577 TTGAGTAGACTTGCGACGCT 59.403 50.000 22.08 0.00 0.00 5.07
2235 3139 5.515270 TCATATTTTGAGTAGACTTGCGACG 59.485 40.000 0.00 0.00 0.00 5.12
2260 3166 0.524392 CTAGCTCCGCACTTGACTCG 60.524 60.000 0.00 0.00 0.00 4.18
2365 3273 7.210174 TCTATTTATCGAGACACTTGGGATTG 58.790 38.462 0.00 0.00 0.00 2.67
2377 3289 6.153000 GGGAAGCATACCTCTATTTATCGAGA 59.847 42.308 0.00 0.00 0.00 4.04
2415 3329 8.859517 TTTTGTGGGTTATAAAGACTTTTTCG 57.140 30.769 5.61 0.00 0.00 3.46
2439 3355 0.535797 GACGGTCTCGATCCCCTTTT 59.464 55.000 0.00 0.00 40.11 2.27
2441 3357 0.324460 AAGACGGTCTCGATCCCCTT 60.324 55.000 11.71 0.00 40.11 3.95
2455 3371 5.929992 TGGTTGAAATACTACCTTGAAGACG 59.070 40.000 0.00 0.00 43.05 4.18
2476 3396 9.889128 CCCTTGTATTGAATCAATAAATTTGGT 57.111 29.630 16.34 0.00 37.94 3.67
2597 3521 7.883391 ACTGTTGCTACTACTATCATACTGT 57.117 36.000 0.00 0.00 0.00 3.55
2598 3522 9.058174 ACTACTGTTGCTACTACTATCATACTG 57.942 37.037 0.00 0.00 0.00 2.74
2642 3589 5.591643 ATCACTACAAAACTGCTACGTTG 57.408 39.130 0.00 0.00 0.00 4.10
2675 3641 1.653114 CGTTGTTGTTGCTGTTGTTGG 59.347 47.619 0.00 0.00 0.00 3.77
2684 3650 5.679792 CCTAAGTTACTTTCGTTGTTGTTGC 59.320 40.000 1.94 0.00 0.00 4.17
2708 3674 9.535270 GCTATGCTTTTCGTATATTGATCTTTC 57.465 33.333 0.00 0.00 0.00 2.62
2734 3702 6.492429 ACAAATATCCATCACTGATCCAATGG 59.508 38.462 0.00 0.00 40.05 3.16
2782 3750 0.243907 TCGCTCTAGGTTGTGACTGC 59.756 55.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.