AutoCloner

Multiple sequence alignment - TraesCS2D01G325800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G325800	chr2D	100.000	2858	0	0	1	2858	419053022	419050165	0.000000e+00	5278.0
1	TraesCS2D01G325800	chr2D	84.368	467	46	10	3	460	557101119	557101567	1.570000e-117	433.0
2	TraesCS2D01G325800	chr2D	83.830	470	49	7	3	463	633373087	633372636	3.400000e-114	422.0
3	TraesCS2D01G325800	chr2D	83.617	470	50	12	3	463	607130044	607129593	1.580000e-112	416.0
4	TraesCS2D01G325800	chr2B	95.683	2270	71	13	498	2748	491355606	491353345	0.000000e+00	3624.0
5	TraesCS2D01G325800	chr2B	92.537	402	18	6	2466	2858	491353526	491353128	1.490000e-157	566.0
6	TraesCS2D01G325800	chr2B	91.257	183	14	2	2567	2748	491353636	491353455	6.110000e-62	248.0
7	TraesCS2D01G325800	chr2B	83.732	209	26	5	263	463	238556799	238556591	1.050000e-44	191.0
8	TraesCS2D01G325800	chr2B	95.652	69	2	1	2677	2744	491353636	491353568	3.010000e-20	110.0
9	TraesCS2D01G325800	chr2A	94.943	2116	65	15	763	2858	570723975	570726068	0.000000e+00	3277.0
10	TraesCS2D01G325800	chr2A	92.135	178	5	4	2466	2634	570725789	570725966	2.840000e-60	243.0
11	TraesCS2D01G325800	chr2A	91.061	179	14	2	2567	2744	570725679	570725856	1.020000e-59	241.0
12	TraesCS2D01G325800	chr2A	82.075	212	24	6	263	463	27761573	27761365	4.900000e-38	169.0
13	TraesCS2D01G325800	chr2A	92.500	80	4	2	2671	2748	570725672	570725751	2.330000e-21	113.0
14	TraesCS2D01G325800	chr2A	85.294	68	2	5	2466	2525	570725899	570725966	2.380000e-06	63.9
15	TraesCS2D01G325800	chr6D	99.399	499	3	0	1	499	240290622	240291120	0.000000e+00	905.0
16	TraesCS2D01G325800	chr6D	82.976	840	131	12	1006	1839	237427474	237428307	0.000000e+00	749.0
17	TraesCS2D01G325800	chr6D	82.619	840	134	12	1006	1839	316825669	316824836	0.000000e+00	732.0
18	TraesCS2D01G325800	chr6A	83.214	840	129	12	1006	1839	306047578	306046745	0.000000e+00	760.0
19	TraesCS2D01G325800	chr6A	94.737	38	2	0	462	499	59504220	59504183	3.080000e-05	60.2
20	TraesCS2D01G325800	chr6B	82.857	840	132	12	1006	1839	364901730	364902563	0.000000e+00	743.0
21	TraesCS2D01G325800	chr6B	82.233	833	136	12	1006	1832	507620691	507621517	0.000000e+00	708.0
22	TraesCS2D01G325800	chr5A	87.500	456	34	14	1	452	130125197	130125633	3.290000e-139	505.0
23	TraesCS2D01G325800	chr5A	98.039	51	1	0	450	500	130125661	130125711	3.920000e-14	89.8
24	TraesCS2D01G325800	chr4D	84.468	470	46	10	3	463	488436014	488435563	3.380000e-119	438.0
25	TraesCS2D01G325800	chr3B	87.595	395	24	6	2109	2479	467900895	467900502	4.370000e-118	435.0
26	TraesCS2D01G325800	chr3B	84.211	209	25	5	263	463	678829685	678829477	2.250000e-46	196.0
27	TraesCS2D01G325800	chrUn	84.043	470	48	7	3	463	31823168	31822717	7.320000e-116	427.0
28	TraesCS2D01G325800	chrUn	100.000	31	0	0	469	499	96707514	96707544	1.110000e-04	58.4
29	TraesCS2D01G325800	chr5D	84.255	470	41	9	3	460	448500649	448501097	7.320000e-116	427.0
30	TraesCS2D01G325800	chr5D	90.909	44	2	2	456	499	556721084	556721125	1.110000e-04	58.4
31	TraesCS2D01G325800	chr1D	83.940	467	48	10	3	460	406702411	406702859	3.400000e-114	422.0
32	TraesCS2D01G325800	chr5B	83.227	471	51	8	3	463	521832351	521831899	9.530000e-110	407.0
33	TraesCS2D01G325800	chr5B	94.737	38	2	0	462	499	112262636	112262673	3.080000e-05	60.2
34	TraesCS2D01G325800	chr5B	100.000	28	0	0	470	497	356198842	356198815	5.000000e-03	52.8
35	TraesCS2D01G325800	chr4B	82.297	209	29	5	263	463	77598866	77599074	1.050000e-39	174.0
36	TraesCS2D01G325800	chr7D	91.765	85	6	1	418	501	540410199	540410115	1.800000e-22	117.0
37	TraesCS2D01G325800	chr7D	94.872	39	2	0	462	500	608768160	608768198	8.550000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G325800	chr2D	419050165	419053022	2857	True	5278.00	5278	100.00000	1	2858	1	chr2D.!!$R1	2857
1	TraesCS2D01G325800	chr2B	491353128	491355606	2478	True	1137.00	3624	93.78225	498	2858	4	chr2B.!!$R2	2360
2	TraesCS2D01G325800	chr2A	570723975	570726068	2093	False	787.58	3277	91.18660	763	2858	5	chr2A.!!$F1	2095
3	TraesCS2D01G325800	chr6D	237427474	237428307	833	False	749.00	749	82.97600	1006	1839	1	chr6D.!!$F1	833
4	TraesCS2D01G325800	chr6D	316824836	316825669	833	True	732.00	732	82.61900	1006	1839	1	chr6D.!!$R1	833
5	TraesCS2D01G325800	chr6A	306046745	306047578	833	True	760.00	760	83.21400	1006	1839	1	chr6A.!!$R2	833
6	TraesCS2D01G325800	chr6B	364901730	364902563	833	False	743.00	743	82.85700	1006	1839	1	chr6B.!!$F1	833
7	TraesCS2D01G325800	chr6B	507620691	507621517	826	False	708.00	708	82.23300	1006	1832	1	chr6B.!!$F2	826
8	TraesCS2D01G325800	chr5A	130125197	130125711	514	False	297.40	505	92.76950	1	500	2	chr5A.!!$F1	499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
121	122	0.034896	GAGCTGGAGGTTGAACCGAA	59.965	55.0	8.98	0.0	44.9	4.3	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2118	2168	0.440758	CCGCAGCGTTCGAAACAATA	59.559	50.0	15.05	0.0	0.0	1.9	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	9.240159	CAAACAACCACAAAAGTAGGTTATAAC	57.760	33.333	7.09	7.09	43.43	1.89
56	57	1.961277	CGGCCTCAAACGAGTTGCT	60.961	57.895	0.00	0.00	37.13	3.91
67	68	6.658831	TCAAACGAGTTGCTTATTCTTTCAG	58.341	36.000	0.00	0.00	37.13	3.02
85	86	4.271696	TCAGATCTTCACAACGGAATGT	57.728	40.909	0.00	0.00	0.00	2.71
97	98	1.024046	CGGAATGTCGGTGCAATGGA	61.024	55.000	0.00	0.00	0.00	3.41
98	99	1.392589	GGAATGTCGGTGCAATGGAT	58.607	50.000	0.00	0.00	0.00	3.41
99	100	2.571212	GGAATGTCGGTGCAATGGATA	58.429	47.619	0.00	0.00	0.00	2.59
119	120	1.376037	GGAGCTGGAGGTTGAACCG	60.376	63.158	8.98	0.00	44.90	4.44
121	122	0.034896	GAGCTGGAGGTTGAACCGAA	59.965	55.000	8.98	0.00	44.90	4.30
149	151	4.906618	ACATAACCGTGATGAACCTCTTT	58.093	39.130	2.58	0.00	0.00	2.52
150	152	5.313712	ACATAACCGTGATGAACCTCTTTT	58.686	37.500	2.58	0.00	0.00	2.27
249	251	1.745653	TGCCACGTGTCATTGTTTTCA	59.254	42.857	15.65	0.00	0.00	2.69
260	262	8.787884	CGTGTCATTGTTTTCAACATATACATG	58.212	33.333	0.00	0.00	42.94	3.21
262	264	9.623350	TGTCATTGTTTTCAACATATACATGTG	57.377	29.630	9.11	0.00	44.83	3.21
263	265	9.624697	GTCATTGTTTTCAACATATACATGTGT	57.375	29.630	9.11	4.04	44.83	3.72
282	284	9.109393	ACATGTGTATGTAACATATTTGACTCC	57.891	33.333	0.00	0.00	45.45	3.85
283	285	8.559536	CATGTGTATGTAACATATTTGACTCCC	58.440	37.037	0.00	0.00	37.79	4.30
284	286	7.625469	TGTGTATGTAACATATTTGACTCCCA	58.375	34.615	0.00	0.00	41.10	4.37
285	287	8.103935	TGTGTATGTAACATATTTGACTCCCAA	58.896	33.333	0.00	0.00	41.10	4.12
286	288	8.395633	GTGTATGTAACATATTTGACTCCCAAC	58.604	37.037	0.00	0.00	41.10	3.77
287	289	8.325787	TGTATGTAACATATTTGACTCCCAACT	58.674	33.333	0.00	0.00	31.07	3.16
288	290	9.174166	GTATGTAACATATTTGACTCCCAACTT	57.826	33.333	0.00	0.00	33.85	2.66
289	291	7.447374	TGTAACATATTTGACTCCCAACTTG	57.553	36.000	0.00	0.00	33.85	3.16
290	292	5.982890	AACATATTTGACTCCCAACTTGG	57.017	39.130	0.12	0.12	37.25	3.61
291	293	4.998051	ACATATTTGACTCCCAACTTGGT	58.002	39.130	7.06	0.00	35.17	3.67
292	294	4.766891	ACATATTTGACTCCCAACTTGGTG	59.233	41.667	7.06	2.30	35.17	4.17
326	339	7.563556	TGGAGAGAATACATATTGTACTGGTCA	59.436	37.037	0.00	0.00	35.42	4.02
408	424	6.791887	ATAATGTCAATAAGATGGTGCTCG	57.208	37.500	0.00	0.00	0.00	5.03
507	553	5.606505	GGGCATTCACCTAGTTTTTCAAAA	58.393	37.500	0.00	0.00	0.00	2.44
508	554	6.052360	GGGCATTCACCTAGTTTTTCAAAAA	58.948	36.000	0.00	0.00	0.00	1.94
589	635	4.089351	CAGAAAAACGAACGCAAAAAGTGT	59.911	37.500	0.00	0.00	44.39	3.55
743	791	4.192317	ACAAGCACGAGTTTCTTTCTTCT	58.808	39.130	0.00	0.00	0.00	2.85
744	792	4.636206	ACAAGCACGAGTTTCTTTCTTCTT	59.364	37.500	0.00	0.00	0.00	2.52
745	793	5.201181	CAAGCACGAGTTTCTTTCTTCTTC	58.799	41.667	0.00	0.00	0.00	2.87
746	794	4.698575	AGCACGAGTTTCTTTCTTCTTCT	58.301	39.130	0.00	0.00	0.00	2.85
749	797	5.006746	GCACGAGTTTCTTTCTTCTTCTCAA	59.993	40.000	0.00	0.00	0.00	3.02
819	867	0.962356	GGCCACCACCTGTCATTCAG	60.962	60.000	0.00	0.00	43.27	3.02
942	992	2.106683	CCCGCACCCAGACGAAATC	61.107	63.158	0.00	0.00	0.00	2.17
1326	1376	3.103911	GACGTCGTCAACCTGCCG	61.104	66.667	20.28	0.00	32.09	5.69
1443	1493	4.803426	CAGCTCCTCACCGACCGC	62.803	72.222	0.00	0.00	0.00	5.68
2099	2149	7.709947	TGCTAGTTACGTACTTATGCTTATGT	58.290	34.615	0.00	4.01	38.33	2.29
2118	2168	7.909641	GCTTATGTTGTTTGCTTGTTTGATTTT	59.090	29.630	0.00	0.00	0.00	1.82
2296	2354	3.931907	TGTCTGGTTGCATATTAGGCT	57.068	42.857	1.68	0.00	0.00	4.58
2414	2473	4.067896	CTGGGTATGATATGCCAGTGAAC	58.932	47.826	0.00	0.00	36.67	3.18
2415	2474	3.716353	TGGGTATGATATGCCAGTGAACT	59.284	43.478	0.00	0.00	36.67	3.01
2460	2519	4.820173	TGATTCAGATCAATGGTGCTCATC	59.180	41.667	0.00	0.00	39.29	2.92
2496	2555	2.498644	GCTTTAGCTTCTTGGGAGGT	57.501	50.000	0.00	0.00	38.21	3.85
2497	2556	2.796557	GCTTTAGCTTCTTGGGAGGTT	58.203	47.619	0.00	0.00	38.21	3.50
2498	2557	2.750166	GCTTTAGCTTCTTGGGAGGTTC	59.250	50.000	0.00	0.00	38.21	3.62
2571	2639	2.368439	TGCCAGTGAATGATAGGTTGC	58.632	47.619	0.00	0.00	0.00	4.17
2635	2703	5.182001	ACTTGCCTTTGCTTCTATACTGTTG	59.818	40.000	0.00	0.00	38.71	3.33
2669	2737	5.735285	TCTAGATAATGAGATGCCAGTGG	57.265	43.478	4.20	4.20	0.00	4.00
2674	2742	2.634815	ATGAGATGCCAGTGGATGAC	57.365	50.000	15.20	0.43	0.00	3.06
2844	3025	8.829373	AGCCCTATTTGTGATAATTTTCTTCT	57.171	30.769	0.00	0.00	0.00	2.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
67	68	2.348666	CCGACATTCCGTTGTGAAGATC	59.651	50.000	0.00	0.00	0.00	2.75
85	86	1.543208	GCTCCATATCCATTGCACCGA	60.543	52.381	0.00	0.00	0.00	4.69
97	98	2.173569	GGTTCAACCTCCAGCTCCATAT	59.826	50.000	0.00	0.00	34.73	1.78
98	99	1.559682	GGTTCAACCTCCAGCTCCATA	59.440	52.381	0.00	0.00	34.73	2.74
99	100	0.329596	GGTTCAACCTCCAGCTCCAT	59.670	55.000	0.00	0.00	34.73	3.41
119	120	7.280205	AGGTTCATCACGGTTATGTTATTCTTC	59.720	37.037	2.52	0.00	0.00	2.87
121	122	6.650120	AGGTTCATCACGGTTATGTTATTCT	58.350	36.000	2.52	0.00	0.00	2.40
149	151	5.359576	ACCTTCAACTCTGCATTGTTGTAAA	59.640	36.000	22.66	14.25	42.71	2.01
150	152	4.887071	ACCTTCAACTCTGCATTGTTGTAA	59.113	37.500	22.66	16.72	42.71	2.41
191	193	8.899427	ATTCTATGGCATCGATGAATATAAGG	57.101	34.615	29.20	12.54	0.00	2.69
260	262	8.395633	GTTGGGAGTCAAATATGTTACATACAC	58.604	37.037	7.26	2.96	37.00	2.90
262	264	8.732746	AGTTGGGAGTCAAATATGTTACATAC	57.267	34.615	7.26	0.00	37.08	2.39
263	265	9.173021	CAAGTTGGGAGTCAAATATGTTACATA	57.827	33.333	7.56	7.56	37.08	2.29
264	266	7.122650	CCAAGTTGGGAGTCAAATATGTTACAT	59.877	37.037	14.64	2.58	37.08	2.29
265	267	6.432783	CCAAGTTGGGAGTCAAATATGTTACA	59.567	38.462	14.64	0.00	37.08	2.41
266	268	6.433093	ACCAAGTTGGGAGTCAAATATGTTAC	59.567	38.462	25.59	0.00	43.37	2.50
267	269	6.432783	CACCAAGTTGGGAGTCAAATATGTTA	59.567	38.462	25.59	0.00	43.37	2.41
268	270	5.243730	CACCAAGTTGGGAGTCAAATATGTT	59.756	40.000	25.59	0.00	43.37	2.71
269	271	4.766891	CACCAAGTTGGGAGTCAAATATGT	59.233	41.667	25.59	0.00	43.37	2.29
270	272	4.158394	CCACCAAGTTGGGAGTCAAATATG	59.842	45.833	25.59	10.36	43.37	1.78
271	273	4.202673	ACCACCAAGTTGGGAGTCAAATAT	60.203	41.667	25.59	0.00	43.37	1.28
272	274	3.139397	ACCACCAAGTTGGGAGTCAAATA	59.861	43.478	25.59	0.00	43.37	1.40
273	275	2.091333	ACCACCAAGTTGGGAGTCAAAT	60.091	45.455	25.59	0.00	43.37	2.32
274	276	1.286553	ACCACCAAGTTGGGAGTCAAA	59.713	47.619	25.59	0.00	43.37	2.69
275	277	0.923358	ACCACCAAGTTGGGAGTCAA	59.077	50.000	25.59	0.00	43.37	3.18
276	278	0.182537	CACCACCAAGTTGGGAGTCA	59.817	55.000	25.59	0.00	43.37	3.41
277	279	0.537371	CCACCACCAAGTTGGGAGTC	60.537	60.000	25.59	0.00	43.37	3.36
278	280	1.286305	ACCACCACCAAGTTGGGAGT	61.286	55.000	25.59	18.40	43.37	3.85
279	281	0.823356	CACCACCACCAAGTTGGGAG	60.823	60.000	25.59	17.76	43.37	4.30
280	282	1.228793	CACCACCACCAAGTTGGGA	59.771	57.895	25.59	0.00	43.37	4.37
281	283	1.832167	CCACCACCACCAAGTTGGG	60.832	63.158	25.59	14.07	43.37	4.12
282	284	1.076339	ACCACCACCACCAAGTTGG	60.076	57.895	20.76	20.76	45.02	3.77
283	285	1.391157	CCACCACCACCACCAAGTTG	61.391	60.000	0.00	0.00	0.00	3.16
284	286	1.076339	CCACCACCACCACCAAGTT	60.076	57.895	0.00	0.00	0.00	2.66
285	287	1.994885	CTCCACCACCACCACCAAGT	61.995	60.000	0.00	0.00	0.00	3.16
286	288	1.228245	CTCCACCACCACCACCAAG	60.228	63.158	0.00	0.00	0.00	3.61
287	289	1.694525	TCTCCACCACCACCACCAA	60.695	57.895	0.00	0.00	0.00	3.67
288	290	2.040359	TCTCCACCACCACCACCA	60.040	61.111	0.00	0.00	0.00	4.17
289	291	1.415672	TTCTCTCCACCACCACCACC	61.416	60.000	0.00	0.00	0.00	4.61
290	292	0.693049	ATTCTCTCCACCACCACCAC	59.307	55.000	0.00	0.00	0.00	4.16
291	293	1.906574	GTATTCTCTCCACCACCACCA	59.093	52.381	0.00	0.00	0.00	4.17
292	294	1.906574	TGTATTCTCTCCACCACCACC	59.093	52.381	0.00	0.00	0.00	4.61
351	367	9.244292	GTTCCTCTCTAATTTATTTCAACCCTT	57.756	33.333	0.00	0.00	0.00	3.95
387	403	4.769688	TCGAGCACCATCTTATTGACATT	58.230	39.130	0.00	0.00	0.00	2.71
388	404	4.406648	TCGAGCACCATCTTATTGACAT	57.593	40.909	0.00	0.00	0.00	3.06
407	423	5.971792	TCATTAATCTACTTCGCTGACTTCG	59.028	40.000	0.00	0.00	0.00	3.79
408	424	6.199342	GGTCATTAATCTACTTCGCTGACTTC	59.801	42.308	0.00	0.00	33.88	3.01
454	500	6.169557	TGCTACGGGACAACAAAGATATAT	57.830	37.500	0.00	0.00	0.00	0.86
558	604	4.627900	TGCGTTCGTTTTTCTGCTCATATA	59.372	37.500	0.00	0.00	0.00	0.86
563	609	2.099633	TTGCGTTCGTTTTTCTGCTC	57.900	45.000	0.00	0.00	0.00	4.26
568	614	4.555718	ACACTTTTTGCGTTCGTTTTTC	57.444	36.364	0.00	0.00	0.00	2.29
611	659	2.590007	GCGGATACAGGCCTGCAG	60.590	66.667	33.06	17.70	0.00	4.41
653	701	6.961360	ACTTTACTTGGAAAAGAAGAAGGG	57.039	37.500	2.79	0.00	37.38	3.95
708	756	0.251916	TGCTTGTACCGGAGAATGGG	59.748	55.000	9.46	0.00	0.00	4.00
743	791	7.996385	AGAAACCTTTTTCGAGAAATTGAGAA	58.004	30.769	1.11	0.00	45.15	2.87
744	792	7.568199	AGAAACCTTTTTCGAGAAATTGAGA	57.432	32.000	1.11	0.00	45.15	3.27
745	793	8.634475	AAAGAAACCTTTTTCGAGAAATTGAG	57.366	30.769	1.11	0.00	45.15	3.02
746	794	8.466798	AGAAAGAAACCTTTTTCGAGAAATTGA	58.533	29.630	1.11	0.00	45.15	2.57
749	797	8.687242	AGAAGAAAGAAACCTTTTTCGAGAAAT	58.313	29.630	1.11	0.00	45.15	2.17
819	867	2.682494	TAGACGGTGGGGTCTGGC	60.682	66.667	5.53	0.00	46.34	4.85
932	980	1.269309	CCTAGCGAGGGATTTCGTCTG	60.269	57.143	4.68	0.00	42.38	3.51
1326	1376	0.461961	CGAGGGAGGTGAAGATGGTC	59.538	60.000	0.00	0.00	0.00	4.02
1913	1963	8.888419	AGATATCATTGTCTCTCCAAACCATAT	58.112	33.333	5.32	0.00	0.00	1.78
2118	2168	0.440758	CCGCAGCGTTCGAAACAATA	59.559	50.000	15.05	0.00	0.00	1.90
2414	2473	6.539826	TCAAACATCACAGCATCAACCTATAG	59.460	38.462	0.00	0.00	0.00	1.31
2415	2474	6.413892	TCAAACATCACAGCATCAACCTATA	58.586	36.000	0.00	0.00	0.00	1.31
2450	2509	1.977854	ACAACCAGTAGATGAGCACCA	59.022	47.619	0.00	0.00	0.00	4.17
2460	2519	7.292129	GCTAAAGCTAGTAAACAACCAGTAG	57.708	40.000	0.00	0.00	38.21	2.57
2492	2551	3.570125	AGCAAAGGCAAGTTAAGAACCTC	59.430	43.478	0.00	0.00	44.61	3.85
2493	2552	3.566351	AGCAAAGGCAAGTTAAGAACCT	58.434	40.909	0.00	0.00	44.61	3.50
2495	2554	5.188327	AGAAGCAAAGGCAAGTTAAGAAC	57.812	39.130	0.00	0.00	44.61	3.01
2496	2555	7.883311	ACTATAGAAGCAAAGGCAAGTTAAGAA	59.117	33.333	6.78	0.00	44.61	2.52
2497	2556	7.334421	CACTATAGAAGCAAAGGCAAGTTAAGA	59.666	37.037	6.78	0.00	44.61	2.10
2498	2557	7.119846	ACACTATAGAAGCAAAGGCAAGTTAAG	59.880	37.037	6.78	0.00	44.61	1.85
2551	2619	2.025981	AGCAACCTATCATTCACTGGCA	60.026	45.455	0.00	0.00	0.00	4.92
2659	2727	0.254178	ACCTGTCATCCACTGGCATC	59.746	55.000	0.00	0.00	46.01	3.91
2669	2737	6.803154	AAAGCTAGTAAACAACCTGTCATC	57.197	37.500	0.00	0.00	0.00	2.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.