Multiple sequence alignment - TraesCS2D01G324700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G324700 chr2D 100.000 3255 0 0 1 3255 417542831 417546085 0.000000e+00 6011.0
1 TraesCS2D01G324700 chr2D 79.348 276 42 5 1278 1539 53649287 53649561 2.580000e-41 180.0
2 TraesCS2D01G324700 chr2D 76.489 319 58 13 5 316 28003248 28003556 1.210000e-34 158.0
3 TraesCS2D01G324700 chr2A 94.005 2569 81 37 388 2915 572616717 572614181 0.000000e+00 3823.0
4 TraesCS2D01G324700 chr2A 93.561 264 11 4 2959 3222 572614184 572613927 3.940000e-104 388.0
5 TraesCS2D01G324700 chr2B 93.514 2467 72 42 683 3110 489418451 489420868 0.000000e+00 3589.0
6 TraesCS2D01G324700 chr2B 86.750 400 40 10 7 398 489364237 489364631 1.790000e-117 433.0
7 TraesCS2D01G324700 chr2B 91.722 302 15 5 389 690 489386620 489386911 8.410000e-111 411.0
8 TraesCS2D01G324700 chr2B 95.522 134 4 1 3124 3255 489420951 489421084 2.540000e-51 213.0
9 TraesCS2D01G324700 chr2B 80.534 262 34 7 1293 1539 83955107 83954848 5.550000e-43 185.0
10 TraesCS2D01G324700 chr4A 85.484 248 33 2 1287 1531 173630690 173630937 4.170000e-64 255.0
11 TraesCS2D01G324700 chr4D 85.081 248 34 2 1287 1531 305141322 305141569 1.940000e-62 250.0
12 TraesCS2D01G324700 chr4B 85.020 247 34 2 1287 1530 381374103 381374349 6.970000e-62 248.0
13 TraesCS2D01G324700 chr7D 79.751 321 53 9 2 319 22625504 22625193 4.230000e-54 222.0
14 TraesCS2D01G324700 chr7D 82.096 229 35 5 1296 1518 438368646 438368874 1.190000e-44 191.0
15 TraesCS2D01G324700 chr7D 81.043 211 34 6 2 208 509561336 509561128 2.600000e-36 163.0
16 TraesCS2D01G324700 chr7D 85.714 70 10 0 1036 1105 215096454 215096385 1.250000e-09 75.0
17 TraesCS2D01G324700 chr7A 82.743 226 33 5 1299 1518 489163234 489163459 2.560000e-46 196.0
18 TraesCS2D01G324700 chr7A 78.689 305 56 7 10 309 138528478 138528178 9.210000e-46 195.0
19 TraesCS2D01G324700 chr3A 77.778 324 64 8 2 321 363408582 363408263 3.310000e-45 193.0
20 TraesCS2D01G324700 chr7B 81.416 226 36 5 1299 1518 455272022 455271797 2.580000e-41 180.0
21 TraesCS2D01G324700 chr6B 76.490 302 67 4 14 313 514833458 514833159 9.350000e-36 161.0
22 TraesCS2D01G324700 chr5D 76.744 301 63 6 9 304 536382903 536383201 9.350000e-36 161.0
23 TraesCS2D01G324700 chr5D 81.333 150 22 3 1036 1182 384348078 384347932 2.050000e-22 117.0
24 TraesCS2D01G324700 chr5D 90.476 63 5 1 1035 1096 519277281 519277343 7.490000e-12 82.4
25 TraesCS2D01G324700 chr3B 76.707 249 54 4 38 284 367476044 367476290 5.660000e-28 135.0
26 TraesCS2D01G324700 chr3B 77.397 146 25 5 1035 1176 583392857 583392716 2.690000e-11 80.5
27 TraesCS2D01G324700 chr3B 90.909 55 5 0 1038 1092 22505935 22505881 1.250000e-09 75.0
28 TraesCS2D01G324700 chr5B 80.667 150 23 3 1036 1182 461141441 461141295 9.550000e-21 111.0
29 TraesCS2D01G324700 chr3D 78.082 146 24 5 1035 1176 445038185 445038044 5.790000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G324700 chr2D 417542831 417546085 3254 False 6011.0 6011 100.000 1 3255 1 chr2D.!!$F3 3254
1 TraesCS2D01G324700 chr2A 572613927 572616717 2790 True 2105.5 3823 93.783 388 3222 2 chr2A.!!$R1 2834
2 TraesCS2D01G324700 chr2B 489418451 489421084 2633 False 1901.0 3589 94.518 683 3255 2 chr2B.!!$F3 2572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 306 0.030399 GCCTAGGGTTAGGGGAGGAA 60.030 60.000 11.72 0.0 45.66 3.36 F
341 342 0.248289 GTGTTTAGGTCAGCCGCCTA 59.752 55.000 0.00 0.0 40.50 3.93 F
342 343 0.535335 TGTTTAGGTCAGCCGCCTAG 59.465 55.000 0.00 0.0 39.49 3.02 F
576 578 0.618458 TCCACTTGGGCCATAGTCAC 59.382 55.000 7.26 0.0 36.21 3.67 F
939 967 1.399791 GCCTGCTATGTGCTTCTGTTC 59.600 52.381 0.00 0.0 43.37 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1636 1678 0.179129 CCGGCGGTTAATACGACAGT 60.179 55.000 19.97 0.0 39.94 3.55 R
1637 1679 1.485032 GCCGGCGGTTAATACGACAG 61.485 60.000 28.82 0.0 39.94 3.51 R
1638 1680 1.519013 GCCGGCGGTTAATACGACA 60.519 57.895 28.82 0.0 39.94 4.35 R
2218 2273 1.737008 GGGCTCGTGGTCGAACTTC 60.737 63.158 0.33 0.0 45.61 3.01 R
2749 2814 0.734889 GCAAGACAGTAATGGCGCAT 59.265 50.000 10.83 0.0 0.00 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.178068 TACCGCCTCAAGAAGATGGC 59.822 55.000 0.00 0.00 37.26 4.40
20 21 1.078214 CCGCCTCAAGAAGATGGCA 60.078 57.895 0.00 0.00 39.22 4.92
21 22 1.094073 CCGCCTCAAGAAGATGGCAG 61.094 60.000 0.00 0.00 39.22 4.85
22 23 1.094073 CGCCTCAAGAAGATGGCAGG 61.094 60.000 0.00 0.00 39.22 4.85
23 24 0.254178 GCCTCAAGAAGATGGCAGGA 59.746 55.000 0.00 0.00 39.14 3.86
24 25 1.340405 GCCTCAAGAAGATGGCAGGAA 60.340 52.381 0.00 0.00 39.14 3.36
25 26 2.686118 GCCTCAAGAAGATGGCAGGAAT 60.686 50.000 0.00 0.00 39.14 3.01
26 27 3.212685 CCTCAAGAAGATGGCAGGAATC 58.787 50.000 0.00 0.00 0.00 2.52
27 28 3.117963 CCTCAAGAAGATGGCAGGAATCT 60.118 47.826 0.00 0.00 35.89 2.40
28 29 4.102210 CCTCAAGAAGATGGCAGGAATCTA 59.898 45.833 0.00 0.00 33.17 1.98
29 30 5.028549 TCAAGAAGATGGCAGGAATCTAC 57.971 43.478 0.00 0.00 33.17 2.59
30 31 3.742433 AGAAGATGGCAGGAATCTACG 57.258 47.619 0.00 0.00 33.17 3.51
31 32 2.139118 GAAGATGGCAGGAATCTACGC 58.861 52.381 0.00 0.00 33.17 4.42
32 33 0.394565 AGATGGCAGGAATCTACGCC 59.605 55.000 0.00 0.00 45.11 5.68
34 35 2.280186 GGCAGGAATCTACGCCGG 60.280 66.667 0.00 0.00 34.26 6.13
35 36 2.792947 GGCAGGAATCTACGCCGGA 61.793 63.158 5.05 0.00 34.26 5.14
36 37 1.300233 GCAGGAATCTACGCCGGAG 60.300 63.158 5.05 3.72 0.00 4.63
37 38 1.300233 CAGGAATCTACGCCGGAGC 60.300 63.158 5.05 0.00 0.00 4.70
38 39 1.455959 AGGAATCTACGCCGGAGCT 60.456 57.895 5.05 0.00 36.60 4.09
39 40 1.007154 GGAATCTACGCCGGAGCTC 60.007 63.158 5.05 4.71 36.60 4.09
40 41 1.007154 GAATCTACGCCGGAGCTCC 60.007 63.158 23.79 23.79 36.60 4.70
41 42 1.735376 GAATCTACGCCGGAGCTCCA 61.735 60.000 31.67 11.45 36.60 3.86
42 43 1.115930 AATCTACGCCGGAGCTCCAT 61.116 55.000 31.67 16.15 36.60 3.41
43 44 1.115930 ATCTACGCCGGAGCTCCATT 61.116 55.000 31.67 14.68 36.60 3.16
44 45 1.592669 CTACGCCGGAGCTCCATTG 60.593 63.158 31.67 21.31 36.60 2.82
45 46 2.016393 CTACGCCGGAGCTCCATTGA 62.016 60.000 31.67 11.85 36.60 2.57
46 47 2.292794 TACGCCGGAGCTCCATTGAC 62.293 60.000 31.67 14.40 36.60 3.18
47 48 2.586792 GCCGGAGCTCCATTGACT 59.413 61.111 31.67 0.00 35.50 3.41
48 49 1.823295 GCCGGAGCTCCATTGACTA 59.177 57.895 31.67 0.00 35.50 2.59
49 50 0.530870 GCCGGAGCTCCATTGACTAC 60.531 60.000 31.67 7.93 35.50 2.73
50 51 0.249073 CCGGAGCTCCATTGACTACG 60.249 60.000 31.67 14.16 37.51 3.51
51 52 0.456221 CGGAGCTCCATTGACTACGT 59.544 55.000 31.67 0.00 33.03 3.57
52 53 1.534175 CGGAGCTCCATTGACTACGTC 60.534 57.143 31.67 0.53 33.03 4.34
53 54 1.202428 GGAGCTCCATTGACTACGTCC 60.202 57.143 28.43 0.00 35.64 4.79
54 55 1.476891 GAGCTCCATTGACTACGTCCA 59.523 52.381 0.87 0.00 0.00 4.02
55 56 1.899814 AGCTCCATTGACTACGTCCAA 59.100 47.619 0.00 0.00 0.00 3.53
56 57 2.000447 GCTCCATTGACTACGTCCAAC 59.000 52.381 0.00 0.00 0.00 3.77
57 58 2.618053 CTCCATTGACTACGTCCAACC 58.382 52.381 0.00 0.00 0.00 3.77
58 59 1.067425 TCCATTGACTACGTCCAACCG 60.067 52.381 0.00 0.00 0.00 4.44
59 60 1.355971 CATTGACTACGTCCAACCGG 58.644 55.000 0.00 0.00 0.00 5.28
60 61 1.067425 CATTGACTACGTCCAACCGGA 60.067 52.381 9.46 0.00 39.79 5.14
68 69 2.646719 TCCAACCGGACGAACTCG 59.353 61.111 9.46 0.00 46.33 4.18
69 70 1.898094 TCCAACCGGACGAACTCGA 60.898 57.895 9.46 0.00 43.39 4.04
70 71 1.443872 CCAACCGGACGAACTCGAG 60.444 63.158 9.46 11.84 43.02 4.04
71 72 1.577922 CAACCGGACGAACTCGAGA 59.422 57.895 21.68 0.00 43.02 4.04
72 73 0.454620 CAACCGGACGAACTCGAGAG 60.455 60.000 21.68 12.29 43.02 3.20
73 74 1.584380 AACCGGACGAACTCGAGAGG 61.584 60.000 21.68 9.91 43.02 3.69
74 75 2.039405 CCGGACGAACTCGAGAGGT 61.039 63.158 21.68 13.23 43.02 3.85
75 76 1.134901 CGGACGAACTCGAGAGGTG 59.865 63.158 21.68 8.24 43.02 4.00
76 77 1.575576 CGGACGAACTCGAGAGGTGT 61.576 60.000 21.68 11.55 43.02 4.16
77 78 0.168568 GGACGAACTCGAGAGGTGTC 59.831 60.000 21.68 18.85 43.02 3.67
78 79 0.179220 GACGAACTCGAGAGGTGTCG 60.179 60.000 21.68 19.45 43.02 4.35
79 80 0.602106 ACGAACTCGAGAGGTGTCGA 60.602 55.000 21.68 0.00 46.52 4.20
89 90 2.047560 GGTGTCGAACCCCGGAAG 60.048 66.667 0.73 0.00 44.02 3.46
90 91 2.576832 GGTGTCGAACCCCGGAAGA 61.577 63.158 0.73 0.00 44.02 2.87
91 92 1.373873 GTGTCGAACCCCGGAAGAC 60.374 63.158 0.73 5.40 39.14 3.01
92 93 1.833492 TGTCGAACCCCGGAAGACA 60.833 57.895 0.73 8.17 39.21 3.41
93 94 1.368579 GTCGAACCCCGGAAGACAA 59.631 57.895 0.73 0.00 39.14 3.18
94 95 0.249996 GTCGAACCCCGGAAGACAAA 60.250 55.000 0.73 0.00 39.14 2.83
95 96 0.249996 TCGAACCCCGGAAGACAAAC 60.250 55.000 0.73 0.00 39.14 2.93
96 97 0.250166 CGAACCCCGGAAGACAAACT 60.250 55.000 0.73 0.00 33.91 2.66
97 98 1.520494 GAACCCCGGAAGACAAACTC 58.480 55.000 0.73 0.00 0.00 3.01
98 99 0.250166 AACCCCGGAAGACAAACTCG 60.250 55.000 0.73 0.00 0.00 4.18
99 100 1.117142 ACCCCGGAAGACAAACTCGA 61.117 55.000 0.73 0.00 0.00 4.04
100 101 0.034337 CCCCGGAAGACAAACTCGAA 59.966 55.000 0.73 0.00 0.00 3.71
101 102 1.429463 CCCGGAAGACAAACTCGAAG 58.571 55.000 0.73 0.00 0.00 3.79
102 103 1.000506 CCCGGAAGACAAACTCGAAGA 59.999 52.381 0.73 0.00 0.00 2.87
103 104 2.547218 CCCGGAAGACAAACTCGAAGAA 60.547 50.000 0.73 0.00 34.09 2.52
104 105 2.731976 CCGGAAGACAAACTCGAAGAAG 59.268 50.000 0.00 0.00 34.09 2.85
105 106 3.552273 CCGGAAGACAAACTCGAAGAAGA 60.552 47.826 0.00 0.00 34.09 2.87
106 107 4.049186 CGGAAGACAAACTCGAAGAAGAA 58.951 43.478 0.00 0.00 34.09 2.52
107 108 4.149046 CGGAAGACAAACTCGAAGAAGAAG 59.851 45.833 0.00 0.00 34.09 2.85
108 109 4.084276 GGAAGACAAACTCGAAGAAGAAGC 60.084 45.833 0.00 0.00 34.09 3.86
109 110 4.060038 AGACAAACTCGAAGAAGAAGCA 57.940 40.909 0.00 0.00 34.09 3.91
110 111 3.804873 AGACAAACTCGAAGAAGAAGCAC 59.195 43.478 0.00 0.00 34.09 4.40
111 112 2.872858 ACAAACTCGAAGAAGAAGCACC 59.127 45.455 0.00 0.00 34.09 5.01
112 113 3.134458 CAAACTCGAAGAAGAAGCACCT 58.866 45.455 0.00 0.00 34.09 4.00
113 114 2.734276 ACTCGAAGAAGAAGCACCTC 57.266 50.000 0.00 0.00 34.09 3.85
114 115 1.273886 ACTCGAAGAAGAAGCACCTCC 59.726 52.381 0.00 0.00 34.09 4.30
115 116 1.273606 CTCGAAGAAGAAGCACCTCCA 59.726 52.381 0.00 0.00 34.09 3.86
116 117 1.902508 TCGAAGAAGAAGCACCTCCAT 59.097 47.619 0.00 0.00 0.00 3.41
117 118 2.093973 TCGAAGAAGAAGCACCTCCATC 60.094 50.000 0.00 0.00 0.00 3.51
118 119 2.637947 GAAGAAGAAGCACCTCCATCC 58.362 52.381 0.00 0.00 0.00 3.51
119 120 1.661463 AGAAGAAGCACCTCCATCCA 58.339 50.000 0.00 0.00 0.00 3.41
120 121 1.280421 AGAAGAAGCACCTCCATCCAC 59.720 52.381 0.00 0.00 0.00 4.02
121 122 0.329596 AAGAAGCACCTCCATCCACC 59.670 55.000 0.00 0.00 0.00 4.61
122 123 1.077429 GAAGCACCTCCATCCACCC 60.077 63.158 0.00 0.00 0.00 4.61
123 124 1.852157 AAGCACCTCCATCCACCCA 60.852 57.895 0.00 0.00 0.00 4.51
124 125 1.434513 AAGCACCTCCATCCACCCAA 61.435 55.000 0.00 0.00 0.00 4.12
125 126 1.379044 GCACCTCCATCCACCCAAG 60.379 63.158 0.00 0.00 0.00 3.61
126 127 1.379044 CACCTCCATCCACCCAAGC 60.379 63.158 0.00 0.00 0.00 4.01
127 128 1.852157 ACCTCCATCCACCCAAGCA 60.852 57.895 0.00 0.00 0.00 3.91
128 129 1.217057 ACCTCCATCCACCCAAGCAT 61.217 55.000 0.00 0.00 0.00 3.79
129 130 0.466922 CCTCCATCCACCCAAGCATC 60.467 60.000 0.00 0.00 0.00 3.91
130 131 0.816825 CTCCATCCACCCAAGCATCG 60.817 60.000 0.00 0.00 0.00 3.84
131 132 2.484062 CCATCCACCCAAGCATCGC 61.484 63.158 0.00 0.00 0.00 4.58
132 133 1.750018 CATCCACCCAAGCATCGCA 60.750 57.895 0.00 0.00 0.00 5.10
133 134 1.750399 ATCCACCCAAGCATCGCAC 60.750 57.895 0.00 0.00 0.00 5.34
134 135 3.443045 CCACCCAAGCATCGCACC 61.443 66.667 0.00 0.00 0.00 5.01
135 136 2.672651 CACCCAAGCATCGCACCA 60.673 61.111 0.00 0.00 0.00 4.17
136 137 2.360350 ACCCAAGCATCGCACCAG 60.360 61.111 0.00 0.00 0.00 4.00
137 138 3.818787 CCCAAGCATCGCACCAGC 61.819 66.667 0.00 0.00 37.42 4.85
138 139 3.057548 CCAAGCATCGCACCAGCA 61.058 61.111 0.00 0.00 42.27 4.41
139 140 2.628696 CCAAGCATCGCACCAGCAA 61.629 57.895 0.00 0.00 42.27 3.91
140 141 1.509463 CAAGCATCGCACCAGCAAT 59.491 52.632 0.00 0.00 42.27 3.56
141 142 0.800683 CAAGCATCGCACCAGCAATG 60.801 55.000 0.00 0.00 42.27 2.82
142 143 0.961857 AAGCATCGCACCAGCAATGA 60.962 50.000 0.00 0.00 37.35 2.57
143 144 1.226491 GCATCGCACCAGCAATGAC 60.226 57.895 0.00 0.00 37.35 3.06
144 145 1.651240 GCATCGCACCAGCAATGACT 61.651 55.000 0.00 0.00 37.35 3.41
145 146 1.655484 CATCGCACCAGCAATGACTA 58.345 50.000 0.00 0.00 37.35 2.59
146 147 2.009051 CATCGCACCAGCAATGACTAA 58.991 47.619 0.00 0.00 37.35 2.24
147 148 2.177394 TCGCACCAGCAATGACTAAA 57.823 45.000 0.00 0.00 42.27 1.85
148 149 2.499197 TCGCACCAGCAATGACTAAAA 58.501 42.857 0.00 0.00 42.27 1.52
149 150 2.881513 TCGCACCAGCAATGACTAAAAA 59.118 40.909 0.00 0.00 42.27 1.94
176 177 7.789026 TCCTAACCTAAATTACTAACAGGAGC 58.211 38.462 0.00 0.00 0.00 4.70
177 178 6.700520 CCTAACCTAAATTACTAACAGGAGCG 59.299 42.308 0.00 0.00 0.00 5.03
178 179 5.019785 ACCTAAATTACTAACAGGAGCGG 57.980 43.478 0.00 0.00 0.00 5.52
179 180 4.713321 ACCTAAATTACTAACAGGAGCGGA 59.287 41.667 0.00 0.00 0.00 5.54
180 181 5.163437 ACCTAAATTACTAACAGGAGCGGAG 60.163 44.000 0.00 0.00 0.00 4.63
181 182 5.068723 CCTAAATTACTAACAGGAGCGGAGA 59.931 44.000 0.00 0.00 0.00 3.71
182 183 4.388378 AATTACTAACAGGAGCGGAGAC 57.612 45.455 0.00 0.00 0.00 3.36
183 184 2.502142 TACTAACAGGAGCGGAGACA 57.498 50.000 0.00 0.00 0.00 3.41
184 185 1.853963 ACTAACAGGAGCGGAGACAT 58.146 50.000 0.00 0.00 0.00 3.06
185 186 1.751924 ACTAACAGGAGCGGAGACATC 59.248 52.381 0.00 0.00 0.00 3.06
186 187 0.738975 TAACAGGAGCGGAGACATCG 59.261 55.000 0.00 0.00 0.00 3.84
187 188 1.949847 AACAGGAGCGGAGACATCGG 61.950 60.000 0.00 0.00 0.00 4.18
188 189 2.121538 CAGGAGCGGAGACATCGGA 61.122 63.158 0.00 0.00 0.00 4.55
189 190 1.152652 AGGAGCGGAGACATCGGAT 60.153 57.895 0.00 0.00 0.00 4.18
190 191 0.757188 AGGAGCGGAGACATCGGATT 60.757 55.000 0.00 0.00 0.00 3.01
191 192 0.319125 GGAGCGGAGACATCGGATTC 60.319 60.000 0.00 0.00 0.00 2.52
192 193 0.319125 GAGCGGAGACATCGGATTCC 60.319 60.000 0.00 0.00 0.00 3.01
193 194 1.301009 GCGGAGACATCGGATTCCC 60.301 63.158 0.00 1.83 0.00 3.97
194 195 1.367840 CGGAGACATCGGATTCCCC 59.632 63.158 0.00 0.00 0.00 4.81
195 196 1.115930 CGGAGACATCGGATTCCCCT 61.116 60.000 0.00 0.00 0.00 4.79
196 197 1.132500 GGAGACATCGGATTCCCCTT 58.868 55.000 0.00 0.00 0.00 3.95
197 198 1.070914 GGAGACATCGGATTCCCCTTC 59.929 57.143 0.00 0.00 0.00 3.46
198 199 1.070914 GAGACATCGGATTCCCCTTCC 59.929 57.143 0.00 0.00 0.00 3.46
199 200 0.108774 GACATCGGATTCCCCTTCCC 59.891 60.000 0.00 0.00 0.00 3.97
200 201 1.071471 CATCGGATTCCCCTTCCCG 59.929 63.158 0.00 0.00 43.02 5.14
201 202 2.819284 ATCGGATTCCCCTTCCCGC 61.819 63.158 0.00 0.00 41.55 6.13
202 203 4.564110 CGGATTCCCCTTCCCGCC 62.564 72.222 0.00 0.00 35.29 6.13
203 204 3.416880 GGATTCCCCTTCCCGCCA 61.417 66.667 0.00 0.00 0.00 5.69
204 205 2.124278 GATTCCCCTTCCCGCCAC 60.124 66.667 0.00 0.00 0.00 5.01
205 206 3.716204 GATTCCCCTTCCCGCCACC 62.716 68.421 0.00 0.00 0.00 4.61
222 223 2.885644 CGGACATCGGAGTTGCGG 60.886 66.667 0.00 0.00 34.75 5.69
223 224 2.264794 GGACATCGGAGTTGCGGT 59.735 61.111 0.00 0.00 0.00 5.68
224 225 1.810030 GGACATCGGAGTTGCGGTC 60.810 63.158 0.00 0.00 0.00 4.79
225 226 1.080093 GACATCGGAGTTGCGGTCA 60.080 57.895 0.00 0.00 0.00 4.02
226 227 1.078759 GACATCGGAGTTGCGGTCAG 61.079 60.000 0.00 0.00 0.00 3.51
227 228 1.215382 CATCGGAGTTGCGGTCAGA 59.785 57.895 0.00 0.00 0.00 3.27
228 229 0.803768 CATCGGAGTTGCGGTCAGAG 60.804 60.000 0.00 0.00 0.00 3.35
229 230 1.949847 ATCGGAGTTGCGGTCAGAGG 61.950 60.000 0.00 0.00 0.00 3.69
230 231 2.266055 GGAGTTGCGGTCAGAGGG 59.734 66.667 0.00 0.00 0.00 4.30
231 232 2.266055 GAGTTGCGGTCAGAGGGG 59.734 66.667 0.00 0.00 0.00 4.79
232 233 3.316573 GAGTTGCGGTCAGAGGGGG 62.317 68.421 0.00 0.00 0.00 5.40
247 248 2.043953 GGGGGTGAATCCACTGGC 60.044 66.667 0.00 0.00 42.77 4.85
248 249 2.616458 GGGGGTGAATCCACTGGCT 61.616 63.158 0.00 0.00 42.77 4.75
249 250 1.077429 GGGGTGAATCCACTGGCTC 60.077 63.158 0.00 0.00 42.77 4.70
250 251 1.077429 GGGTGAATCCACTGGCTCC 60.077 63.158 0.00 0.00 42.77 4.70
251 252 1.566298 GGGTGAATCCACTGGCTCCT 61.566 60.000 0.00 0.00 42.77 3.69
252 253 0.107459 GGTGAATCCACTGGCTCCTC 60.107 60.000 0.00 0.00 42.77 3.71
253 254 0.460987 GTGAATCCACTGGCTCCTCG 60.461 60.000 0.00 0.00 40.10 4.63
254 255 1.144936 GAATCCACTGGCTCCTCGG 59.855 63.158 0.00 0.00 0.00 4.63
255 256 1.613630 AATCCACTGGCTCCTCGGT 60.614 57.895 0.00 0.00 0.00 4.69
256 257 1.903877 AATCCACTGGCTCCTCGGTG 61.904 60.000 0.00 0.00 42.14 4.94
257 258 2.805313 ATCCACTGGCTCCTCGGTGA 62.805 60.000 5.49 0.00 44.48 4.02
258 259 2.583441 CCACTGGCTCCTCGGTGAA 61.583 63.158 5.49 0.00 44.48 3.18
259 260 1.079543 CACTGGCTCCTCGGTGAAG 60.080 63.158 0.00 0.00 44.48 3.02
260 261 1.534235 ACTGGCTCCTCGGTGAAGT 60.534 57.895 0.00 0.00 0.00 3.01
261 262 1.079543 CTGGCTCCTCGGTGAAGTG 60.080 63.158 0.00 0.00 0.00 3.16
262 263 1.821061 CTGGCTCCTCGGTGAAGTGT 61.821 60.000 0.00 0.00 0.00 3.55
263 264 1.374758 GGCTCCTCGGTGAAGTGTG 60.375 63.158 0.00 0.00 0.00 3.82
264 265 1.666011 GCTCCTCGGTGAAGTGTGA 59.334 57.895 0.00 0.00 0.00 3.58
265 266 0.033504 GCTCCTCGGTGAAGTGTGAA 59.966 55.000 0.00 0.00 0.00 3.18
266 267 1.937108 GCTCCTCGGTGAAGTGTGAAG 60.937 57.143 0.00 0.00 0.00 3.02
267 268 0.679505 TCCTCGGTGAAGTGTGAAGG 59.320 55.000 0.00 0.00 0.00 3.46
268 269 0.679505 CCTCGGTGAAGTGTGAAGGA 59.320 55.000 0.00 0.00 0.00 3.36
269 270 1.070134 CCTCGGTGAAGTGTGAAGGAA 59.930 52.381 0.00 0.00 0.00 3.36
270 271 2.484770 CCTCGGTGAAGTGTGAAGGAAA 60.485 50.000 0.00 0.00 0.00 3.13
271 272 3.202906 CTCGGTGAAGTGTGAAGGAAAA 58.797 45.455 0.00 0.00 0.00 2.29
272 273 3.611970 TCGGTGAAGTGTGAAGGAAAAA 58.388 40.909 0.00 0.00 0.00 1.94
273 274 3.625764 TCGGTGAAGTGTGAAGGAAAAAG 59.374 43.478 0.00 0.00 0.00 2.27
274 275 3.377172 CGGTGAAGTGTGAAGGAAAAAGT 59.623 43.478 0.00 0.00 0.00 2.66
275 276 4.142469 CGGTGAAGTGTGAAGGAAAAAGTT 60.142 41.667 0.00 0.00 0.00 2.66
276 277 5.621329 CGGTGAAGTGTGAAGGAAAAAGTTT 60.621 40.000 0.00 0.00 0.00 2.66
277 278 5.576774 GGTGAAGTGTGAAGGAAAAAGTTTG 59.423 40.000 0.00 0.00 0.00 2.93
278 279 5.062183 GTGAAGTGTGAAGGAAAAAGTTTGC 59.938 40.000 0.00 0.00 0.00 3.68
279 280 4.123497 AGTGTGAAGGAAAAAGTTTGCC 57.877 40.909 0.00 0.00 35.99 4.52
280 281 3.513515 AGTGTGAAGGAAAAAGTTTGCCA 59.486 39.130 3.58 0.00 38.42 4.92
281 282 4.162131 AGTGTGAAGGAAAAAGTTTGCCAT 59.838 37.500 3.58 0.00 38.42 4.40
282 283 5.362430 AGTGTGAAGGAAAAAGTTTGCCATA 59.638 36.000 3.58 0.00 38.42 2.74
283 284 6.045955 GTGTGAAGGAAAAAGTTTGCCATAA 58.954 36.000 3.58 0.00 38.42 1.90
284 285 6.019075 GTGTGAAGGAAAAAGTTTGCCATAAC 60.019 38.462 3.58 0.00 38.42 1.89
285 286 5.465390 GTGAAGGAAAAAGTTTGCCATAACC 59.535 40.000 3.58 0.00 38.42 2.85
286 287 4.251543 AGGAAAAAGTTTGCCATAACCG 57.748 40.909 3.58 0.00 38.42 4.44
287 288 2.734606 GGAAAAAGTTTGCCATAACCGC 59.265 45.455 0.00 0.00 35.80 5.68
288 289 2.448926 AAAAGTTTGCCATAACCGCC 57.551 45.000 0.00 0.00 0.00 6.13
289 290 1.627864 AAAGTTTGCCATAACCGCCT 58.372 45.000 0.00 0.00 0.00 5.52
290 291 2.500392 AAGTTTGCCATAACCGCCTA 57.500 45.000 0.00 0.00 0.00 3.93
291 292 2.038387 AGTTTGCCATAACCGCCTAG 57.962 50.000 0.00 0.00 0.00 3.02
293 294 0.106918 TTTGCCATAACCGCCTAGGG 60.107 55.000 11.72 0.14 46.96 3.53
294 295 1.276140 TTGCCATAACCGCCTAGGGT 61.276 55.000 11.72 0.00 46.96 4.34
303 304 4.315349 GCCTAGGGTTAGGGGAGG 57.685 66.667 11.72 0.00 45.66 4.30
304 305 1.630442 GCCTAGGGTTAGGGGAGGA 59.370 63.158 11.72 0.00 45.66 3.71
305 306 0.030399 GCCTAGGGTTAGGGGAGGAA 60.030 60.000 11.72 0.00 45.66 3.36
306 307 1.627195 GCCTAGGGTTAGGGGAGGAAA 60.627 57.143 11.72 0.00 45.66 3.13
307 308 2.125233 CCTAGGGTTAGGGGAGGAAAC 58.875 57.143 0.00 0.00 42.44 2.78
308 309 2.563596 CCTAGGGTTAGGGGAGGAAACA 60.564 54.545 0.00 0.00 42.44 2.83
309 310 2.143231 AGGGTTAGGGGAGGAAACAA 57.857 50.000 0.00 0.00 0.00 2.83
310 311 1.993301 AGGGTTAGGGGAGGAAACAAG 59.007 52.381 0.00 0.00 0.00 3.16
311 312 1.990327 GGGTTAGGGGAGGAAACAAGA 59.010 52.381 0.00 0.00 0.00 3.02
312 313 2.026169 GGGTTAGGGGAGGAAACAAGAG 60.026 54.545 0.00 0.00 0.00 2.85
313 314 2.026169 GGTTAGGGGAGGAAACAAGAGG 60.026 54.545 0.00 0.00 0.00 3.69
314 315 2.910977 GTTAGGGGAGGAAACAAGAGGA 59.089 50.000 0.00 0.00 0.00 3.71
315 316 2.133858 AGGGGAGGAAACAAGAGGAA 57.866 50.000 0.00 0.00 0.00 3.36
316 317 1.988846 AGGGGAGGAAACAAGAGGAAG 59.011 52.381 0.00 0.00 0.00 3.46
317 318 1.705745 GGGGAGGAAACAAGAGGAAGT 59.294 52.381 0.00 0.00 0.00 3.01
318 319 2.290387 GGGGAGGAAACAAGAGGAAGTC 60.290 54.545 0.00 0.00 0.00 3.01
319 320 2.372172 GGGAGGAAACAAGAGGAAGTCA 59.628 50.000 0.00 0.00 0.00 3.41
320 321 3.009584 GGGAGGAAACAAGAGGAAGTCAT 59.990 47.826 0.00 0.00 0.00 3.06
321 322 4.006319 GGAGGAAACAAGAGGAAGTCATG 58.994 47.826 0.00 0.00 0.00 3.07
322 323 4.006319 GAGGAAACAAGAGGAAGTCATGG 58.994 47.826 0.00 0.00 0.00 3.66
323 324 3.395941 AGGAAACAAGAGGAAGTCATGGT 59.604 43.478 0.00 0.00 0.00 3.55
324 325 3.503748 GGAAACAAGAGGAAGTCATGGTG 59.496 47.826 0.00 0.00 0.00 4.17
325 326 3.864789 AACAAGAGGAAGTCATGGTGT 57.135 42.857 0.00 0.00 0.00 4.16
326 327 3.864789 ACAAGAGGAAGTCATGGTGTT 57.135 42.857 0.00 0.00 0.00 3.32
327 328 4.170468 ACAAGAGGAAGTCATGGTGTTT 57.830 40.909 0.00 0.00 0.00 2.83
328 329 5.304686 ACAAGAGGAAGTCATGGTGTTTA 57.695 39.130 0.00 0.00 0.00 2.01
329 330 5.308825 ACAAGAGGAAGTCATGGTGTTTAG 58.691 41.667 0.00 0.00 0.00 1.85
330 331 4.559862 AGAGGAAGTCATGGTGTTTAGG 57.440 45.455 0.00 0.00 0.00 2.69
331 332 3.910627 AGAGGAAGTCATGGTGTTTAGGT 59.089 43.478 0.00 0.00 0.00 3.08
332 333 4.020128 AGAGGAAGTCATGGTGTTTAGGTC 60.020 45.833 0.00 0.00 0.00 3.85
333 334 3.650942 AGGAAGTCATGGTGTTTAGGTCA 59.349 43.478 0.00 0.00 0.00 4.02
334 335 4.003648 GGAAGTCATGGTGTTTAGGTCAG 58.996 47.826 0.00 0.00 0.00 3.51
335 336 3.059352 AGTCATGGTGTTTAGGTCAGC 57.941 47.619 0.00 0.00 0.00 4.26
336 337 2.084546 GTCATGGTGTTTAGGTCAGCC 58.915 52.381 0.00 0.00 33.13 4.85
337 338 1.086696 CATGGTGTTTAGGTCAGCCG 58.913 55.000 0.00 0.00 40.50 5.52
338 339 0.676782 ATGGTGTTTAGGTCAGCCGC 60.677 55.000 0.00 0.00 40.50 6.53
339 340 2.038837 GGTGTTTAGGTCAGCCGCC 61.039 63.158 0.00 0.00 40.50 6.13
340 341 1.003718 GTGTTTAGGTCAGCCGCCT 60.004 57.895 0.00 0.00 40.50 5.52
341 342 0.248289 GTGTTTAGGTCAGCCGCCTA 59.752 55.000 0.00 0.00 40.50 3.93
342 343 0.535335 TGTTTAGGTCAGCCGCCTAG 59.465 55.000 0.00 0.00 39.49 3.02
343 344 0.822164 GTTTAGGTCAGCCGCCTAGA 59.178 55.000 0.00 0.00 39.49 2.43
344 345 1.112113 TTTAGGTCAGCCGCCTAGAG 58.888 55.000 0.00 0.00 39.49 2.43
345 346 1.392710 TTAGGTCAGCCGCCTAGAGC 61.393 60.000 0.00 0.00 39.49 4.09
363 364 1.959747 GCGCTAGCGTATTATCGACA 58.040 50.000 35.21 0.00 42.09 4.35
364 365 2.516923 GCGCTAGCGTATTATCGACAT 58.483 47.619 35.21 0.00 42.09 3.06
365 366 2.526688 GCGCTAGCGTATTATCGACATC 59.473 50.000 35.21 12.41 42.09 3.06
366 367 3.728268 GCGCTAGCGTATTATCGACATCT 60.728 47.826 35.21 0.00 42.09 2.90
367 368 4.404324 CGCTAGCGTATTATCGACATCTT 58.596 43.478 28.66 0.00 34.35 2.40
368 369 5.557388 CGCTAGCGTATTATCGACATCTTA 58.443 41.667 28.66 0.00 34.35 2.10
369 370 5.448479 CGCTAGCGTATTATCGACATCTTAC 59.552 44.000 28.66 0.00 34.35 2.34
370 371 6.312487 GCTAGCGTATTATCGACATCTTACA 58.688 40.000 0.00 0.00 0.00 2.41
371 372 6.967767 GCTAGCGTATTATCGACATCTTACAT 59.032 38.462 0.00 0.00 0.00 2.29
372 373 7.485277 GCTAGCGTATTATCGACATCTTACATT 59.515 37.037 0.00 0.00 0.00 2.71
373 374 9.983804 CTAGCGTATTATCGACATCTTACATTA 57.016 33.333 0.00 0.00 0.00 1.90
375 376 9.343103 AGCGTATTATCGACATCTTACATTAAG 57.657 33.333 0.00 0.00 37.13 1.85
376 377 9.125906 GCGTATTATCGACATCTTACATTAAGT 57.874 33.333 0.00 0.00 37.10 2.24
384 385 9.569167 TCGACATCTTACATTAAGTTACAGAAG 57.431 33.333 0.00 0.00 37.10 2.85
385 386 8.808529 CGACATCTTACATTAAGTTACAGAAGG 58.191 37.037 0.00 0.00 37.10 3.46
386 387 9.654663 GACATCTTACATTAAGTTACAGAAGGT 57.345 33.333 0.00 0.00 37.10 3.50
441 442 5.308014 TCTGCAGTGTTTGTTGTCAGATAT 58.692 37.500 14.67 0.00 0.00 1.63
444 445 7.443879 TCTGCAGTGTTTGTTGTCAGATATAAA 59.556 33.333 14.67 0.00 0.00 1.40
445 446 7.935520 TGCAGTGTTTGTTGTCAGATATAAAA 58.064 30.769 0.00 0.00 0.00 1.52
446 447 8.409371 TGCAGTGTTTGTTGTCAGATATAAAAA 58.591 29.630 0.00 0.00 0.00 1.94
492 493 1.608336 TCCGATCGGTCCTTGGTGT 60.608 57.895 32.15 0.00 36.47 4.16
498 499 1.666872 CGGTCCTTGGTGTCGGTTC 60.667 63.158 0.00 0.00 0.00 3.62
504 505 1.202651 CCTTGGTGTCGGTTCAGAACT 60.203 52.381 13.13 0.00 0.00 3.01
507 508 3.823281 TGGTGTCGGTTCAGAACTAAA 57.177 42.857 13.13 0.00 0.00 1.85
509 510 3.064931 GGTGTCGGTTCAGAACTAAAGG 58.935 50.000 13.13 0.00 0.00 3.11
511 512 3.988517 GTGTCGGTTCAGAACTAAAGGAG 59.011 47.826 13.13 0.00 0.00 3.69
523 524 4.722361 ACTAAAGGAGTTCTCCGATGAC 57.278 45.455 12.43 0.00 33.13 3.06
524 525 2.656560 AAAGGAGTTCTCCGATGACG 57.343 50.000 12.43 0.00 39.43 4.35
546 547 9.481340 TGACGGAGAATTATATCAAAATCAGAG 57.519 33.333 0.00 0.00 0.00 3.35
566 568 5.182001 CAGAGAAACAATTACTCCACTTGGG 59.818 44.000 0.00 0.00 35.41 4.12
575 577 0.911769 CTCCACTTGGGCCATAGTCA 59.088 55.000 7.26 2.43 36.21 3.41
576 578 0.618458 TCCACTTGGGCCATAGTCAC 59.382 55.000 7.26 0.00 36.21 3.67
579 581 2.359900 CACTTGGGCCATAGTCACTTC 58.640 52.381 7.26 0.00 0.00 3.01
590 598 6.238759 GGCCATAGTCACTTCCATTAATTGAC 60.239 42.308 0.00 8.54 44.19 3.18
617 625 8.584157 TCTGTAATTAATTTTGGTGAGTGCAAT 58.416 29.630 5.91 0.00 0.00 3.56
618 626 8.531622 TGTAATTAATTTTGGTGAGTGCAATG 57.468 30.769 5.91 0.00 0.00 2.82
619 627 6.484818 AATTAATTTTGGTGAGTGCAATGC 57.515 33.333 0.00 0.00 0.00 3.56
620 628 3.472283 AATTTTGGTGAGTGCAATGCA 57.528 38.095 2.72 2.72 35.60 3.96
621 629 2.975732 TTTTGGTGAGTGCAATGCAA 57.024 40.000 10.44 0.00 41.47 4.08
649 657 2.159043 CCGATGTAGAAGCATCACCACT 60.159 50.000 6.83 0.00 43.92 4.00
893 918 2.928801 TCTCTCTCTCTCATCCCTCG 57.071 55.000 0.00 0.00 0.00 4.63
939 967 1.399791 GCCTGCTATGTGCTTCTGTTC 59.600 52.381 0.00 0.00 43.37 3.18
960 988 3.956199 TCCATCCATGATTCAAGCTTTCC 59.044 43.478 0.00 0.00 0.00 3.13
1009 1039 2.957402 AAAGGAAGTGATGGAGCACA 57.043 45.000 0.00 0.00 41.19 4.57
1466 1497 1.516603 GCTCGTCTTCTACACCGGC 60.517 63.158 0.00 0.00 0.00 6.13
1614 1645 5.712004 CAACATCTTTTCACCATGCATGTA 58.288 37.500 24.58 7.67 0.00 2.29
1634 1676 6.769608 TGTATTGCTTGTGATCGATCATAC 57.230 37.500 29.53 23.46 39.30 2.39
1635 1677 6.515832 TGTATTGCTTGTGATCGATCATACT 58.484 36.000 29.53 13.25 39.30 2.12
1636 1678 7.657336 TGTATTGCTTGTGATCGATCATACTA 58.343 34.615 29.53 16.18 39.30 1.82
1637 1679 7.595130 TGTATTGCTTGTGATCGATCATACTAC 59.405 37.037 29.53 21.03 39.30 2.73
1638 1680 5.774498 TGCTTGTGATCGATCATACTACT 57.226 39.130 29.53 0.00 39.30 2.57
1645 1694 6.649557 TGTGATCGATCATACTACTGTCGTAT 59.350 38.462 29.53 0.00 39.30 3.06
1651 1700 6.735510 CGATCATACTACTGTCGTATTAACCG 59.264 42.308 2.54 2.14 0.00 4.44
1773 1822 1.652012 CAAAGAAAAGCGGCGTGGA 59.348 52.632 9.37 0.00 0.00 4.02
1795 1844 2.186532 TGATCGAGGAGATAGGGTCG 57.813 55.000 0.00 0.00 40.26 4.79
2218 2273 0.898320 TCTCTTCTTCCTTCGGCCAG 59.102 55.000 2.24 0.00 0.00 4.85
2584 2648 4.158764 GCAGGTCGATCAGTTAGGCTATAT 59.841 45.833 0.00 0.00 0.00 0.86
2586 2650 6.459024 GCAGGTCGATCAGTTAGGCTATATAG 60.459 46.154 5.30 5.30 0.00 1.31
2941 3006 2.685897 ACCGCAACAACACATAACAACT 59.314 40.909 0.00 0.00 0.00 3.16
2951 3016 4.299155 ACACATAACAACTCTCGTGTCAG 58.701 43.478 0.00 0.00 32.37 3.51
2956 3021 2.408050 ACAACTCTCGTGTCAGCAATC 58.592 47.619 0.00 0.00 0.00 2.67
3020 3085 2.287849 TGATTCGATGATCAGCTCCGTC 60.288 50.000 9.64 2.91 32.50 4.79
3107 3172 5.825532 TGGTGGATCCAGTTCATGAAAATA 58.174 37.500 16.81 0.00 41.93 1.40
3108 3173 5.652014 TGGTGGATCCAGTTCATGAAAATAC 59.348 40.000 16.81 0.00 41.93 1.89
3109 3174 5.888161 GGTGGATCCAGTTCATGAAAATACT 59.112 40.000 16.81 0.14 35.97 2.12
3111 3176 7.253422 GTGGATCCAGTTCATGAAAATACTTG 58.747 38.462 16.81 0.00 0.00 3.16
3114 3179 8.956426 GGATCCAGTTCATGAAAATACTTGTTA 58.044 33.333 10.35 0.00 0.00 2.41
3134 3269 7.780008 TGTTATATAGTGTGTGTATGTTGCC 57.220 36.000 0.00 0.00 0.00 4.52
3228 3365 0.663153 GAGAGAGAGAGAGCGCTTCC 59.337 60.000 13.26 6.62 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.178068 GCCATCTTCTTGAGGCGGTA 59.822 55.000 0.00 0.00 37.41 4.02
1 2 1.078143 GCCATCTTCTTGAGGCGGT 60.078 57.895 0.00 0.00 37.41 5.68
2 3 3.819188 GCCATCTTCTTGAGGCGG 58.181 61.111 0.00 0.00 37.41 6.13
5 6 2.795231 TTCCTGCCATCTTCTTGAGG 57.205 50.000 0.00 0.00 0.00 3.86
6 7 4.153673 AGATTCCTGCCATCTTCTTGAG 57.846 45.455 0.00 0.00 0.00 3.02
7 8 4.442052 CGTAGATTCCTGCCATCTTCTTGA 60.442 45.833 0.00 0.00 32.94 3.02
8 9 3.806521 CGTAGATTCCTGCCATCTTCTTG 59.193 47.826 0.00 0.00 32.94 3.02
9 10 3.742640 GCGTAGATTCCTGCCATCTTCTT 60.743 47.826 0.00 0.00 32.94 2.52
10 11 2.224161 GCGTAGATTCCTGCCATCTTCT 60.224 50.000 0.00 0.00 32.94 2.85
11 12 2.139118 GCGTAGATTCCTGCCATCTTC 58.861 52.381 0.00 0.00 32.94 2.87
12 13 1.202698 GGCGTAGATTCCTGCCATCTT 60.203 52.381 6.55 0.00 46.76 2.40
13 14 0.394565 GGCGTAGATTCCTGCCATCT 59.605 55.000 6.55 0.00 46.76 2.90
14 15 2.919971 GGCGTAGATTCCTGCCATC 58.080 57.895 6.55 0.00 46.76 3.51
17 18 2.280186 CCGGCGTAGATTCCTGCC 60.280 66.667 6.01 2.23 44.09 4.85
18 19 1.300233 CTCCGGCGTAGATTCCTGC 60.300 63.158 6.01 0.00 0.00 4.85
19 20 1.300233 GCTCCGGCGTAGATTCCTG 60.300 63.158 2.79 0.00 0.00 3.86
20 21 1.455959 AGCTCCGGCGTAGATTCCT 60.456 57.895 2.79 0.00 44.37 3.36
21 22 1.007154 GAGCTCCGGCGTAGATTCC 60.007 63.158 2.79 0.00 44.37 3.01
22 23 1.007154 GGAGCTCCGGCGTAGATTC 60.007 63.158 19.06 0.00 44.37 2.52
23 24 1.115930 ATGGAGCTCCGGCGTAGATT 61.116 55.000 27.43 1.13 44.37 2.40
24 25 1.115930 AATGGAGCTCCGGCGTAGAT 61.116 55.000 27.43 10.88 44.37 1.98
25 26 1.756950 AATGGAGCTCCGGCGTAGA 60.757 57.895 27.43 8.79 44.37 2.59
26 27 1.592669 CAATGGAGCTCCGGCGTAG 60.593 63.158 27.43 10.28 44.37 3.51
27 28 2.055633 TCAATGGAGCTCCGGCGTA 61.056 57.895 27.43 10.38 44.37 4.42
28 29 3.390521 TCAATGGAGCTCCGGCGT 61.391 61.111 27.43 10.87 44.37 5.68
29 30 2.016393 TAGTCAATGGAGCTCCGGCG 62.016 60.000 27.43 17.34 44.37 6.46
30 31 0.530870 GTAGTCAATGGAGCTCCGGC 60.531 60.000 27.43 15.14 39.43 6.13
31 32 0.249073 CGTAGTCAATGGAGCTCCGG 60.249 60.000 27.43 18.90 39.43 5.14
32 33 0.456221 ACGTAGTCAATGGAGCTCCG 59.544 55.000 27.43 13.83 29.74 4.63
51 52 1.859427 CTCGAGTTCGTCCGGTTGGA 61.859 60.000 3.62 0.00 39.15 3.53
52 53 1.443872 CTCGAGTTCGTCCGGTTGG 60.444 63.158 3.62 0.00 40.80 3.77
53 54 0.454620 CTCTCGAGTTCGTCCGGTTG 60.455 60.000 13.13 0.00 40.80 3.77
54 55 1.584380 CCTCTCGAGTTCGTCCGGTT 61.584 60.000 13.13 0.00 40.80 4.44
55 56 2.039405 CCTCTCGAGTTCGTCCGGT 61.039 63.158 13.13 0.00 40.80 5.28
56 57 2.039405 ACCTCTCGAGTTCGTCCGG 61.039 63.158 13.13 0.00 40.80 5.14
57 58 1.134901 CACCTCTCGAGTTCGTCCG 59.865 63.158 13.13 0.00 40.80 4.79
58 59 0.168568 GACACCTCTCGAGTTCGTCC 59.831 60.000 13.13 0.00 40.80 4.79
59 60 0.179220 CGACACCTCTCGAGTTCGTC 60.179 60.000 13.13 13.28 40.80 4.20
60 61 0.602106 TCGACACCTCTCGAGTTCGT 60.602 55.000 13.13 5.81 37.76 3.85
61 62 0.516001 TTCGACACCTCTCGAGTTCG 59.484 55.000 13.13 13.18 43.34 3.95
62 63 1.401278 GGTTCGACACCTCTCGAGTTC 60.401 57.143 13.13 1.96 43.34 3.01
63 64 0.597072 GGTTCGACACCTCTCGAGTT 59.403 55.000 13.13 0.00 43.34 3.01
64 65 1.242665 GGGTTCGACACCTCTCGAGT 61.243 60.000 13.13 0.00 46.38 4.18
65 66 1.507174 GGGTTCGACACCTCTCGAG 59.493 63.158 5.93 5.93 46.38 4.04
66 67 1.975407 GGGGTTCGACACCTCTCGA 60.975 63.158 13.94 0.00 44.00 4.04
67 68 2.572284 GGGGTTCGACACCTCTCG 59.428 66.667 13.94 0.00 44.00 4.04
68 69 2.572284 CGGGGTTCGACACCTCTC 59.428 66.667 12.77 5.66 45.48 3.20
69 70 2.995574 CCGGGGTTCGACACCTCT 60.996 66.667 12.77 0.00 45.48 3.69
70 71 2.502692 CTTCCGGGGTTCGACACCTC 62.503 65.000 0.00 10.45 46.38 3.85
71 72 2.524887 TTCCGGGGTTCGACACCT 60.525 61.111 0.00 0.00 46.38 4.00
72 73 2.047560 CTTCCGGGGTTCGACACC 60.048 66.667 0.00 7.90 46.46 4.16
73 74 1.373873 GTCTTCCGGGGTTCGACAC 60.374 63.158 0.00 0.00 42.43 3.67
74 75 1.401318 TTGTCTTCCGGGGTTCGACA 61.401 55.000 0.00 4.89 42.43 4.35
75 76 0.249996 TTTGTCTTCCGGGGTTCGAC 60.250 55.000 0.00 2.12 42.43 4.20
76 77 0.249996 GTTTGTCTTCCGGGGTTCGA 60.250 55.000 0.00 0.00 42.43 3.71
77 78 0.250166 AGTTTGTCTTCCGGGGTTCG 60.250 55.000 0.00 0.00 38.88 3.95
78 79 1.520494 GAGTTTGTCTTCCGGGGTTC 58.480 55.000 0.00 0.00 0.00 3.62
79 80 0.250166 CGAGTTTGTCTTCCGGGGTT 60.250 55.000 0.00 0.00 0.00 4.11
80 81 1.117142 TCGAGTTTGTCTTCCGGGGT 61.117 55.000 0.00 0.00 0.00 4.95
81 82 0.034337 TTCGAGTTTGTCTTCCGGGG 59.966 55.000 0.00 0.00 0.00 5.73
82 83 1.000506 TCTTCGAGTTTGTCTTCCGGG 59.999 52.381 0.00 0.00 0.00 5.73
83 84 2.433868 TCTTCGAGTTTGTCTTCCGG 57.566 50.000 0.00 0.00 0.00 5.14
84 85 3.639538 TCTTCTTCGAGTTTGTCTTCCG 58.360 45.455 0.00 0.00 0.00 4.30
85 86 4.084276 GCTTCTTCTTCGAGTTTGTCTTCC 60.084 45.833 0.00 0.00 0.00 3.46
86 87 4.508124 TGCTTCTTCTTCGAGTTTGTCTTC 59.492 41.667 0.00 0.00 0.00 2.87
87 88 4.271291 GTGCTTCTTCTTCGAGTTTGTCTT 59.729 41.667 0.00 0.00 0.00 3.01
88 89 3.804873 GTGCTTCTTCTTCGAGTTTGTCT 59.195 43.478 0.00 0.00 0.00 3.41
89 90 3.059529 GGTGCTTCTTCTTCGAGTTTGTC 60.060 47.826 0.00 0.00 0.00 3.18
90 91 2.872858 GGTGCTTCTTCTTCGAGTTTGT 59.127 45.455 0.00 0.00 0.00 2.83
91 92 3.134458 AGGTGCTTCTTCTTCGAGTTTG 58.866 45.455 0.00 0.00 0.00 2.93
92 93 3.394719 GAGGTGCTTCTTCTTCGAGTTT 58.605 45.455 0.00 0.00 0.00 2.66
93 94 2.289133 GGAGGTGCTTCTTCTTCGAGTT 60.289 50.000 0.00 0.00 0.00 3.01
94 95 1.273886 GGAGGTGCTTCTTCTTCGAGT 59.726 52.381 0.00 0.00 0.00 4.18
95 96 1.273606 TGGAGGTGCTTCTTCTTCGAG 59.726 52.381 0.00 0.00 0.00 4.04
96 97 1.338107 TGGAGGTGCTTCTTCTTCGA 58.662 50.000 0.00 0.00 0.00 3.71
97 98 2.275318 GATGGAGGTGCTTCTTCTTCG 58.725 52.381 0.00 0.00 0.00 3.79
98 99 2.026822 TGGATGGAGGTGCTTCTTCTTC 60.027 50.000 0.00 0.00 0.00 2.87
99 100 1.988107 TGGATGGAGGTGCTTCTTCTT 59.012 47.619 0.00 0.00 0.00 2.52
100 101 1.280421 GTGGATGGAGGTGCTTCTTCT 59.720 52.381 0.00 0.00 0.00 2.85
101 102 1.680249 GGTGGATGGAGGTGCTTCTTC 60.680 57.143 0.00 0.00 0.00 2.87
102 103 0.329596 GGTGGATGGAGGTGCTTCTT 59.670 55.000 0.00 0.00 0.00 2.52
103 104 1.566298 GGGTGGATGGAGGTGCTTCT 61.566 60.000 0.00 0.00 0.00 2.85
104 105 1.077429 GGGTGGATGGAGGTGCTTC 60.077 63.158 0.00 0.00 0.00 3.86
105 106 1.434513 TTGGGTGGATGGAGGTGCTT 61.435 55.000 0.00 0.00 0.00 3.91
106 107 1.852157 TTGGGTGGATGGAGGTGCT 60.852 57.895 0.00 0.00 0.00 4.40
107 108 1.379044 CTTGGGTGGATGGAGGTGC 60.379 63.158 0.00 0.00 0.00 5.01
108 109 1.379044 GCTTGGGTGGATGGAGGTG 60.379 63.158 0.00 0.00 0.00 4.00
109 110 1.217057 ATGCTTGGGTGGATGGAGGT 61.217 55.000 0.00 0.00 0.00 3.85
110 111 0.466922 GATGCTTGGGTGGATGGAGG 60.467 60.000 0.00 0.00 0.00 4.30
111 112 0.816825 CGATGCTTGGGTGGATGGAG 60.817 60.000 0.00 0.00 0.00 3.86
112 113 1.224315 CGATGCTTGGGTGGATGGA 59.776 57.895 0.00 0.00 0.00 3.41
113 114 2.484062 GCGATGCTTGGGTGGATGG 61.484 63.158 0.00 0.00 0.00 3.51
114 115 1.750018 TGCGATGCTTGGGTGGATG 60.750 57.895 0.00 0.00 0.00 3.51
115 116 1.750399 GTGCGATGCTTGGGTGGAT 60.750 57.895 0.00 0.00 0.00 3.41
116 117 2.359850 GTGCGATGCTTGGGTGGA 60.360 61.111 0.00 0.00 0.00 4.02
117 118 3.443045 GGTGCGATGCTTGGGTGG 61.443 66.667 0.00 0.00 0.00 4.61
118 119 2.672651 TGGTGCGATGCTTGGGTG 60.673 61.111 0.00 0.00 0.00 4.61
119 120 2.360350 CTGGTGCGATGCTTGGGT 60.360 61.111 0.00 0.00 0.00 4.51
120 121 3.818787 GCTGGTGCGATGCTTGGG 61.819 66.667 0.00 0.00 0.00 4.12
121 122 1.940883 ATTGCTGGTGCGATGCTTGG 61.941 55.000 0.00 0.00 41.48 3.61
122 123 1.509463 ATTGCTGGTGCGATGCTTG 59.491 52.632 0.00 0.00 41.48 4.01
123 124 4.007457 ATTGCTGGTGCGATGCTT 57.993 50.000 0.00 0.00 41.48 3.91
127 128 2.401583 TTAGTCATTGCTGGTGCGAT 57.598 45.000 0.00 0.00 43.70 4.58
128 129 2.177394 TTTAGTCATTGCTGGTGCGA 57.823 45.000 0.00 0.00 43.34 5.10
129 130 2.987413 TTTTAGTCATTGCTGGTGCG 57.013 45.000 0.00 0.00 43.34 5.34
150 151 8.430431 GCTCCTGTTAGTAATTTAGGTTAGGAT 58.570 37.037 0.00 0.00 30.94 3.24
151 152 7.417116 CGCTCCTGTTAGTAATTTAGGTTAGGA 60.417 40.741 9.35 0.00 0.00 2.94
152 153 6.700520 CGCTCCTGTTAGTAATTTAGGTTAGG 59.299 42.308 9.35 0.00 0.00 2.69
153 154 6.700520 CCGCTCCTGTTAGTAATTTAGGTTAG 59.299 42.308 9.35 4.24 0.00 2.34
154 155 6.380846 TCCGCTCCTGTTAGTAATTTAGGTTA 59.619 38.462 9.35 0.00 0.00 2.85
155 156 5.188359 TCCGCTCCTGTTAGTAATTTAGGTT 59.812 40.000 9.35 0.00 0.00 3.50
156 157 4.713321 TCCGCTCCTGTTAGTAATTTAGGT 59.287 41.667 9.35 0.00 0.00 3.08
157 158 5.068723 TCTCCGCTCCTGTTAGTAATTTAGG 59.931 44.000 5.06 5.06 0.00 2.69
158 159 5.978322 GTCTCCGCTCCTGTTAGTAATTTAG 59.022 44.000 0.00 0.00 0.00 1.85
159 160 5.419788 TGTCTCCGCTCCTGTTAGTAATTTA 59.580 40.000 0.00 0.00 0.00 1.40
160 161 4.222145 TGTCTCCGCTCCTGTTAGTAATTT 59.778 41.667 0.00 0.00 0.00 1.82
161 162 3.767673 TGTCTCCGCTCCTGTTAGTAATT 59.232 43.478 0.00 0.00 0.00 1.40
162 163 3.362706 TGTCTCCGCTCCTGTTAGTAAT 58.637 45.455 0.00 0.00 0.00 1.89
163 164 2.799017 TGTCTCCGCTCCTGTTAGTAA 58.201 47.619 0.00 0.00 0.00 2.24
164 165 2.502142 TGTCTCCGCTCCTGTTAGTA 57.498 50.000 0.00 0.00 0.00 1.82
165 166 1.751924 GATGTCTCCGCTCCTGTTAGT 59.248 52.381 0.00 0.00 0.00 2.24
166 167 1.268794 CGATGTCTCCGCTCCTGTTAG 60.269 57.143 0.00 0.00 0.00 2.34
167 168 0.738975 CGATGTCTCCGCTCCTGTTA 59.261 55.000 0.00 0.00 0.00 2.41
168 169 1.513158 CGATGTCTCCGCTCCTGTT 59.487 57.895 0.00 0.00 0.00 3.16
169 170 2.418910 CCGATGTCTCCGCTCCTGT 61.419 63.158 0.00 0.00 0.00 4.00
170 171 1.459455 ATCCGATGTCTCCGCTCCTG 61.459 60.000 0.00 0.00 0.00 3.86
171 172 0.757188 AATCCGATGTCTCCGCTCCT 60.757 55.000 0.00 0.00 0.00 3.69
172 173 0.319125 GAATCCGATGTCTCCGCTCC 60.319 60.000 0.00 0.00 0.00 4.70
173 174 0.319125 GGAATCCGATGTCTCCGCTC 60.319 60.000 0.00 0.00 0.00 5.03
174 175 1.742768 GGAATCCGATGTCTCCGCT 59.257 57.895 0.00 0.00 0.00 5.52
175 176 1.301009 GGGAATCCGATGTCTCCGC 60.301 63.158 0.00 0.00 0.00 5.54
176 177 1.115930 AGGGGAATCCGATGTCTCCG 61.116 60.000 0.00 0.00 39.61 4.63
177 178 1.070914 GAAGGGGAATCCGATGTCTCC 59.929 57.143 0.00 2.74 41.52 3.71
178 179 1.070914 GGAAGGGGAATCCGATGTCTC 59.929 57.143 0.00 0.00 41.52 3.36
179 180 1.132500 GGAAGGGGAATCCGATGTCT 58.868 55.000 0.00 0.00 41.52 3.41
180 181 0.108774 GGGAAGGGGAATCCGATGTC 59.891 60.000 0.00 0.00 41.52 3.06
181 182 1.696097 CGGGAAGGGGAATCCGATGT 61.696 60.000 0.00 0.00 44.69 3.06
182 183 1.071471 CGGGAAGGGGAATCCGATG 59.929 63.158 0.00 0.00 44.69 3.84
183 184 2.819284 GCGGGAAGGGGAATCCGAT 61.819 63.158 4.71 0.00 44.69 4.18
184 185 3.476419 GCGGGAAGGGGAATCCGA 61.476 66.667 4.71 0.00 44.69 4.55
185 186 4.564110 GGCGGGAAGGGGAATCCG 62.564 72.222 0.00 0.00 44.70 4.18
186 187 3.416880 TGGCGGGAAGGGGAATCC 61.417 66.667 0.00 0.00 36.16 3.01
187 188 2.124278 GTGGCGGGAAGGGGAATC 60.124 66.667 0.00 0.00 0.00 2.52
188 189 3.739613 GGTGGCGGGAAGGGGAAT 61.740 66.667 0.00 0.00 0.00 3.01
194 195 4.096003 ATGTCCGGTGGCGGGAAG 62.096 66.667 0.00 0.00 34.72 3.46
195 196 4.090588 GATGTCCGGTGGCGGGAA 62.091 66.667 0.00 0.00 34.72 3.97
205 206 2.885644 CCGCAACTCCGATGTCCG 60.886 66.667 0.00 0.00 38.18 4.79
206 207 1.810030 GACCGCAACTCCGATGTCC 60.810 63.158 0.00 0.00 0.00 4.02
207 208 1.078759 CTGACCGCAACTCCGATGTC 61.079 60.000 0.00 0.00 0.00 3.06
208 209 1.079819 CTGACCGCAACTCCGATGT 60.080 57.895 0.00 0.00 0.00 3.06
209 210 0.803768 CTCTGACCGCAACTCCGATG 60.804 60.000 0.00 0.00 0.00 3.84
210 211 1.513158 CTCTGACCGCAACTCCGAT 59.487 57.895 0.00 0.00 0.00 4.18
211 212 2.636412 CCTCTGACCGCAACTCCGA 61.636 63.158 0.00 0.00 0.00 4.55
212 213 2.125912 CCTCTGACCGCAACTCCG 60.126 66.667 0.00 0.00 0.00 4.63
213 214 2.266055 CCCTCTGACCGCAACTCC 59.734 66.667 0.00 0.00 0.00 3.85
214 215 2.266055 CCCCTCTGACCGCAACTC 59.734 66.667 0.00 0.00 0.00 3.01
215 216 3.322466 CCCCCTCTGACCGCAACT 61.322 66.667 0.00 0.00 0.00 3.16
230 231 2.043953 GCCAGTGGATTCACCCCC 60.044 66.667 15.20 0.00 44.64 5.40
231 232 1.077429 GAGCCAGTGGATTCACCCC 60.077 63.158 15.20 0.00 44.64 4.95
232 233 1.077429 GGAGCCAGTGGATTCACCC 60.077 63.158 15.20 0.00 44.64 4.61
233 234 0.107459 GAGGAGCCAGTGGATTCACC 60.107 60.000 15.20 4.12 44.64 4.02
234 235 0.460987 CGAGGAGCCAGTGGATTCAC 60.461 60.000 15.20 2.46 43.93 3.18
235 236 1.617018 CCGAGGAGCCAGTGGATTCA 61.617 60.000 15.20 0.00 0.00 2.57
236 237 1.144936 CCGAGGAGCCAGTGGATTC 59.855 63.158 15.20 5.10 0.00 2.52
237 238 1.613630 ACCGAGGAGCCAGTGGATT 60.614 57.895 15.20 0.00 0.00 3.01
238 239 2.039624 ACCGAGGAGCCAGTGGAT 59.960 61.111 15.20 6.44 0.00 3.41
239 240 2.997315 CACCGAGGAGCCAGTGGA 60.997 66.667 15.20 0.00 0.00 4.02
240 241 2.513026 CTTCACCGAGGAGCCAGTGG 62.513 65.000 4.20 4.20 0.00 4.00
241 242 1.079543 CTTCACCGAGGAGCCAGTG 60.080 63.158 0.00 0.00 0.00 3.66
242 243 1.534235 ACTTCACCGAGGAGCCAGT 60.534 57.895 0.00 0.00 0.00 4.00
243 244 1.079543 CACTTCACCGAGGAGCCAG 60.080 63.158 0.00 0.00 0.00 4.85
244 245 1.837051 ACACTTCACCGAGGAGCCA 60.837 57.895 0.00 0.00 0.00 4.75
245 246 1.374758 CACACTTCACCGAGGAGCC 60.375 63.158 0.00 0.00 0.00 4.70
246 247 0.033504 TTCACACTTCACCGAGGAGC 59.966 55.000 0.00 0.00 0.00 4.70
247 248 1.337260 CCTTCACACTTCACCGAGGAG 60.337 57.143 0.00 0.00 0.00 3.69
248 249 0.679505 CCTTCACACTTCACCGAGGA 59.320 55.000 0.00 0.00 0.00 3.71
249 250 0.679505 TCCTTCACACTTCACCGAGG 59.320 55.000 0.00 0.00 0.00 4.63
250 251 2.526304 TTCCTTCACACTTCACCGAG 57.474 50.000 0.00 0.00 0.00 4.63
251 252 2.992124 TTTCCTTCACACTTCACCGA 57.008 45.000 0.00 0.00 0.00 4.69
252 253 3.377172 ACTTTTTCCTTCACACTTCACCG 59.623 43.478 0.00 0.00 0.00 4.94
253 254 4.983671 ACTTTTTCCTTCACACTTCACC 57.016 40.909 0.00 0.00 0.00 4.02
254 255 5.062183 GCAAACTTTTTCCTTCACACTTCAC 59.938 40.000 0.00 0.00 0.00 3.18
255 256 5.167845 GCAAACTTTTTCCTTCACACTTCA 58.832 37.500 0.00 0.00 0.00 3.02
256 257 4.566759 GGCAAACTTTTTCCTTCACACTTC 59.433 41.667 0.00 0.00 0.00 3.01
257 258 4.020662 TGGCAAACTTTTTCCTTCACACTT 60.021 37.500 0.00 0.00 0.00 3.16
258 259 3.513515 TGGCAAACTTTTTCCTTCACACT 59.486 39.130 0.00 0.00 0.00 3.55
259 260 3.855858 TGGCAAACTTTTTCCTTCACAC 58.144 40.909 0.00 0.00 0.00 3.82
260 261 4.751767 ATGGCAAACTTTTTCCTTCACA 57.248 36.364 0.00 0.00 0.00 3.58
261 262 5.465390 GGTTATGGCAAACTTTTTCCTTCAC 59.535 40.000 0.00 0.00 0.00 3.18
262 263 5.606505 GGTTATGGCAAACTTTTTCCTTCA 58.393 37.500 0.00 0.00 0.00 3.02
263 264 4.684242 CGGTTATGGCAAACTTTTTCCTTC 59.316 41.667 0.00 0.00 0.00 3.46
264 265 4.627058 CGGTTATGGCAAACTTTTTCCTT 58.373 39.130 0.00 0.00 0.00 3.36
265 266 3.554129 GCGGTTATGGCAAACTTTTTCCT 60.554 43.478 0.00 0.00 0.00 3.36
266 267 2.734606 GCGGTTATGGCAAACTTTTTCC 59.265 45.455 0.00 0.00 0.00 3.13
267 268 2.734606 GGCGGTTATGGCAAACTTTTTC 59.265 45.455 0.00 0.00 0.00 2.29
268 269 2.367241 AGGCGGTTATGGCAAACTTTTT 59.633 40.909 0.00 0.00 36.77 1.94
269 270 1.967779 AGGCGGTTATGGCAAACTTTT 59.032 42.857 0.00 0.00 36.77 2.27
270 271 1.627864 AGGCGGTTATGGCAAACTTT 58.372 45.000 0.00 0.00 36.77 2.66
271 272 2.365582 CTAGGCGGTTATGGCAAACTT 58.634 47.619 0.00 0.00 36.77 2.66
272 273 1.408266 CCTAGGCGGTTATGGCAAACT 60.408 52.381 0.00 0.00 36.77 2.66
273 274 1.021968 CCTAGGCGGTTATGGCAAAC 58.978 55.000 0.00 0.00 36.77 2.93
274 275 0.106918 CCCTAGGCGGTTATGGCAAA 60.107 55.000 2.05 0.00 36.77 3.68
275 276 1.276140 ACCCTAGGCGGTTATGGCAA 61.276 55.000 2.05 0.00 36.77 4.52
276 277 1.276140 AACCCTAGGCGGTTATGGCA 61.276 55.000 2.05 0.00 44.50 4.92
277 278 0.760572 TAACCCTAGGCGGTTATGGC 59.239 55.000 2.05 0.00 44.50 4.40
278 279 1.346722 CCTAACCCTAGGCGGTTATGG 59.653 57.143 2.05 7.44 45.22 2.74
279 280 1.346722 CCCTAACCCTAGGCGGTTATG 59.653 57.143 2.05 4.94 45.22 1.90
280 281 1.725803 CCCTAACCCTAGGCGGTTAT 58.274 55.000 2.05 0.00 45.22 1.89
281 282 0.398948 CCCCTAACCCTAGGCGGTTA 60.399 60.000 2.05 6.85 44.50 2.85
283 284 2.041197 CCCCTAACCCTAGGCGGT 60.041 66.667 2.05 0.00 43.25 5.68
284 285 1.837499 CTCCCCTAACCCTAGGCGG 60.837 68.421 2.05 0.35 43.25 6.13
285 286 1.837499 CCTCCCCTAACCCTAGGCG 60.837 68.421 2.05 0.00 43.25 5.52
286 287 0.030399 TTCCTCCCCTAACCCTAGGC 60.030 60.000 2.05 0.00 43.25 3.93
287 288 2.125233 GTTTCCTCCCCTAACCCTAGG 58.875 57.143 0.06 0.06 44.10 3.02
288 289 2.841795 TGTTTCCTCCCCTAACCCTAG 58.158 52.381 0.00 0.00 0.00 3.02
289 290 3.181392 TCTTGTTTCCTCCCCTAACCCTA 60.181 47.826 0.00 0.00 0.00 3.53
290 291 1.993301 CTTGTTTCCTCCCCTAACCCT 59.007 52.381 0.00 0.00 0.00 4.34
291 292 1.990327 TCTTGTTTCCTCCCCTAACCC 59.010 52.381 0.00 0.00 0.00 4.11
292 293 2.026169 CCTCTTGTTTCCTCCCCTAACC 60.026 54.545 0.00 0.00 0.00 2.85
293 294 2.910977 TCCTCTTGTTTCCTCCCCTAAC 59.089 50.000 0.00 0.00 0.00 2.34
294 295 3.285290 TCCTCTTGTTTCCTCCCCTAA 57.715 47.619 0.00 0.00 0.00 2.69
295 296 3.182152 CTTCCTCTTGTTTCCTCCCCTA 58.818 50.000 0.00 0.00 0.00 3.53
296 297 1.988846 CTTCCTCTTGTTTCCTCCCCT 59.011 52.381 0.00 0.00 0.00 4.79
297 298 1.705745 ACTTCCTCTTGTTTCCTCCCC 59.294 52.381 0.00 0.00 0.00 4.81
298 299 2.372172 TGACTTCCTCTTGTTTCCTCCC 59.628 50.000 0.00 0.00 0.00 4.30
299 300 3.771577 TGACTTCCTCTTGTTTCCTCC 57.228 47.619 0.00 0.00 0.00 4.30
300 301 4.006319 CCATGACTTCCTCTTGTTTCCTC 58.994 47.826 0.00 0.00 0.00 3.71
301 302 3.395941 ACCATGACTTCCTCTTGTTTCCT 59.604 43.478 0.00 0.00 0.00 3.36
302 303 3.503748 CACCATGACTTCCTCTTGTTTCC 59.496 47.826 0.00 0.00 0.00 3.13
303 304 4.137543 ACACCATGACTTCCTCTTGTTTC 58.862 43.478 0.00 0.00 0.00 2.78
304 305 4.170468 ACACCATGACTTCCTCTTGTTT 57.830 40.909 0.00 0.00 0.00 2.83
305 306 3.864789 ACACCATGACTTCCTCTTGTT 57.135 42.857 0.00 0.00 0.00 2.83
306 307 3.864789 AACACCATGACTTCCTCTTGT 57.135 42.857 0.00 0.00 0.00 3.16
307 308 4.697352 CCTAAACACCATGACTTCCTCTTG 59.303 45.833 0.00 0.00 0.00 3.02
308 309 4.351111 ACCTAAACACCATGACTTCCTCTT 59.649 41.667 0.00 0.00 0.00 2.85
309 310 3.910627 ACCTAAACACCATGACTTCCTCT 59.089 43.478 0.00 0.00 0.00 3.69
310 311 4.254492 GACCTAAACACCATGACTTCCTC 58.746 47.826 0.00 0.00 0.00 3.71
311 312 3.650942 TGACCTAAACACCATGACTTCCT 59.349 43.478 0.00 0.00 0.00 3.36
312 313 4.003648 CTGACCTAAACACCATGACTTCC 58.996 47.826 0.00 0.00 0.00 3.46
313 314 3.437049 GCTGACCTAAACACCATGACTTC 59.563 47.826 0.00 0.00 0.00 3.01
314 315 3.412386 GCTGACCTAAACACCATGACTT 58.588 45.455 0.00 0.00 0.00 3.01
315 316 2.290323 GGCTGACCTAAACACCATGACT 60.290 50.000 0.00 0.00 0.00 3.41
316 317 2.084546 GGCTGACCTAAACACCATGAC 58.915 52.381 0.00 0.00 0.00 3.06
317 318 1.338674 CGGCTGACCTAAACACCATGA 60.339 52.381 0.00 0.00 0.00 3.07
318 319 1.086696 CGGCTGACCTAAACACCATG 58.913 55.000 0.00 0.00 0.00 3.66
319 320 0.676782 GCGGCTGACCTAAACACCAT 60.677 55.000 0.00 0.00 0.00 3.55
320 321 1.302192 GCGGCTGACCTAAACACCA 60.302 57.895 0.00 0.00 0.00 4.17
321 322 2.038837 GGCGGCTGACCTAAACACC 61.039 63.158 0.00 0.00 0.00 4.16
322 323 0.248289 TAGGCGGCTGACCTAAACAC 59.752 55.000 23.55 0.00 36.83 3.32
323 324 0.535335 CTAGGCGGCTGACCTAAACA 59.465 55.000 23.55 0.00 39.29 2.83
324 325 0.822164 TCTAGGCGGCTGACCTAAAC 59.178 55.000 23.55 0.00 39.29 2.01
325 326 1.112113 CTCTAGGCGGCTGACCTAAA 58.888 55.000 23.55 0.00 39.29 1.85
326 327 1.392710 GCTCTAGGCGGCTGACCTAA 61.393 60.000 23.55 0.00 39.29 2.69
327 328 1.828660 GCTCTAGGCGGCTGACCTA 60.829 63.158 23.55 13.12 38.81 3.08
328 329 3.151022 GCTCTAGGCGGCTGACCT 61.151 66.667 23.55 12.34 41.57 3.85
337 338 0.241481 AATACGCTAGCGCTCTAGGC 59.759 55.000 35.63 13.74 42.00 3.93
338 339 3.544440 CGATAATACGCTAGCGCTCTAGG 60.544 52.174 35.63 16.38 42.00 3.02
339 340 3.306434 TCGATAATACGCTAGCGCTCTAG 59.694 47.826 35.63 20.40 44.03 2.43
340 341 3.061831 GTCGATAATACGCTAGCGCTCTA 59.938 47.826 35.63 23.08 44.19 2.43
341 342 2.074576 TCGATAATACGCTAGCGCTCT 58.925 47.619 35.63 21.72 44.19 4.09
342 343 2.167591 GTCGATAATACGCTAGCGCTC 58.832 52.381 35.63 21.70 44.19 5.03
343 344 1.534163 TGTCGATAATACGCTAGCGCT 59.466 47.619 35.63 24.05 44.19 5.92
344 345 1.959747 TGTCGATAATACGCTAGCGC 58.040 50.000 35.63 17.72 44.19 5.92
345 346 4.004772 AGATGTCGATAATACGCTAGCG 57.995 45.455 34.27 34.27 46.03 4.26
346 347 6.312487 TGTAAGATGTCGATAATACGCTAGC 58.688 40.000 4.06 4.06 0.00 3.42
347 348 8.897457 AATGTAAGATGTCGATAATACGCTAG 57.103 34.615 0.00 0.00 0.00 3.42
349 350 9.343103 CTTAATGTAAGATGTCGATAATACGCT 57.657 33.333 0.00 0.00 38.02 5.07
350 351 9.125906 ACTTAATGTAAGATGTCGATAATACGC 57.874 33.333 2.11 0.00 39.09 4.42
358 359 9.569167 CTTCTGTAACTTAATGTAAGATGTCGA 57.431 33.333 2.11 0.00 39.09 4.20
359 360 8.808529 CCTTCTGTAACTTAATGTAAGATGTCG 58.191 37.037 2.11 0.00 39.09 4.35
360 361 9.654663 ACCTTCTGTAACTTAATGTAAGATGTC 57.345 33.333 2.11 0.00 39.09 3.06
361 362 9.436957 CACCTTCTGTAACTTAATGTAAGATGT 57.563 33.333 2.11 0.00 39.09 3.06
362 363 9.436957 ACACCTTCTGTAACTTAATGTAAGATG 57.563 33.333 2.11 0.00 39.09 2.90
374 375 9.227777 GGACAAAATATTACACCTTCTGTAACT 57.772 33.333 0.00 0.00 46.08 2.24
375 376 9.005777 TGGACAAAATATTACACCTTCTGTAAC 57.994 33.333 0.00 0.00 46.08 2.50
377 378 9.391006 GATGGACAAAATATTACACCTTCTGTA 57.609 33.333 0.00 0.00 33.91 2.74
378 379 8.109634 AGATGGACAAAATATTACACCTTCTGT 58.890 33.333 13.28 0.00 36.82 3.41
379 380 8.511604 AGATGGACAAAATATTACACCTTCTG 57.488 34.615 13.28 0.00 32.17 3.02
380 381 8.552296 AGAGATGGACAAAATATTACACCTTCT 58.448 33.333 13.63 13.63 34.67 2.85
381 382 8.738645 AGAGATGGACAAAATATTACACCTTC 57.261 34.615 0.00 0.00 0.00 3.46
382 383 9.838339 CTAGAGATGGACAAAATATTACACCTT 57.162 33.333 0.00 0.00 0.00 3.50
383 384 8.993424 ACTAGAGATGGACAAAATATTACACCT 58.007 33.333 0.00 0.00 0.00 4.00
384 385 9.046296 CACTAGAGATGGACAAAATATTACACC 57.954 37.037 0.00 0.00 0.00 4.16
385 386 8.552034 GCACTAGAGATGGACAAAATATTACAC 58.448 37.037 0.00 0.00 0.00 2.90
386 387 8.264347 TGCACTAGAGATGGACAAAATATTACA 58.736 33.333 0.00 0.00 0.00 2.41
417 418 3.544684 TCTGACAACAAACACTGCAGAT 58.455 40.909 23.35 4.88 0.00 2.90
492 493 4.950205 AACTCCTTTAGTTCTGAACCGA 57.050 40.909 16.48 2.92 45.64 4.69
517 518 8.925700 TGATTTTGATATAATTCTCCGTCATCG 58.074 33.333 0.00 0.00 0.00 3.84
520 521 9.481340 CTCTGATTTTGATATAATTCTCCGTCA 57.519 33.333 0.00 0.00 0.00 4.35
521 522 9.698309 TCTCTGATTTTGATATAATTCTCCGTC 57.302 33.333 0.00 0.00 0.00 4.79
546 547 3.056821 GGCCCAAGTGGAGTAATTGTTTC 60.057 47.826 0.00 0.00 37.39 2.78
550 551 2.214376 TGGCCCAAGTGGAGTAATTG 57.786 50.000 0.00 0.00 37.39 2.32
566 568 6.942532 TCAATTAATGGAAGTGACTATGGC 57.057 37.500 0.00 0.00 37.23 4.40
590 598 7.592938 TGCACTCACCAAAATTAATTACAGAG 58.407 34.615 0.01 7.58 0.00 3.35
617 625 3.597675 TACATCGGGCGTGCTTGCA 62.598 57.895 3.25 0.00 36.28 4.08
618 626 2.813179 CTACATCGGGCGTGCTTGC 61.813 63.158 0.00 0.00 0.00 4.01
619 627 0.739462 TTCTACATCGGGCGTGCTTG 60.739 55.000 0.00 0.00 0.00 4.01
620 628 0.460284 CTTCTACATCGGGCGTGCTT 60.460 55.000 0.00 0.00 0.00 3.91
621 629 1.141881 CTTCTACATCGGGCGTGCT 59.858 57.895 0.00 0.00 0.00 4.40
649 657 2.289195 ACGTGGCGATTTAAGGAACTCA 60.289 45.455 0.00 0.00 38.49 3.41
939 967 3.702548 TGGAAAGCTTGAATCATGGATGG 59.297 43.478 0.00 0.00 0.00 3.51
960 988 8.272545 TCTAGAAATCAACCAAACAGATCATG 57.727 34.615 0.00 0.00 0.00 3.07
1009 1039 4.756458 GTGCTGCTCCTGCTCGCT 62.756 66.667 0.00 0.00 40.48 4.93
1614 1645 6.644181 CAGTAGTATGATCGATCACAAGCAAT 59.356 38.462 29.49 14.67 40.03 3.56
1634 1676 2.378806 CGGCGGTTAATACGACAGTAG 58.621 52.381 0.00 0.00 39.94 2.57
1635 1677 1.065401 CCGGCGGTTAATACGACAGTA 59.935 52.381 19.97 0.00 39.94 2.74
1636 1678 0.179129 CCGGCGGTTAATACGACAGT 60.179 55.000 19.97 0.00 39.94 3.55
1637 1679 1.485032 GCCGGCGGTTAATACGACAG 61.485 60.000 28.82 0.00 39.94 3.51
1638 1680 1.519013 GCCGGCGGTTAATACGACA 60.519 57.895 28.82 0.00 39.94 4.35
1773 1822 3.621214 CGACCCTATCTCCTCGATCATCT 60.621 52.174 0.00 0.00 33.48 2.90
2218 2273 1.737008 GGGCTCGTGGTCGAACTTC 60.737 63.158 0.33 0.00 45.61 3.01
2604 2669 9.919348 GCTAGCTACTCGTAACATAGTTATATC 57.081 37.037 7.70 0.00 0.00 1.63
2749 2814 0.734889 GCAAGACAGTAATGGCGCAT 59.265 50.000 10.83 0.00 0.00 4.73
2941 3006 0.969149 ACCAGATTGCTGACACGAGA 59.031 50.000 0.00 0.00 45.17 4.04
3020 3085 0.596083 GACCCACTCGATCAGATGCG 60.596 60.000 0.00 0.00 0.00 4.73
3107 3172 8.879759 GCAACATACACACACTATATAACAAGT 58.120 33.333 0.00 0.00 0.00 3.16
3108 3173 8.335356 GGCAACATACACACACTATATAACAAG 58.665 37.037 0.00 0.00 0.00 3.16
3109 3174 8.044309 AGGCAACATACACACACTATATAACAA 58.956 33.333 0.00 0.00 41.41 2.83
3111 3176 7.709182 TCAGGCAACATACACACACTATATAAC 59.291 37.037 0.00 0.00 41.41 1.89
3114 3179 6.233905 TCAGGCAACATACACACACTATAT 57.766 37.500 0.00 0.00 41.41 0.86
3115 3180 5.669164 TCAGGCAACATACACACACTATA 57.331 39.130 0.00 0.00 41.41 1.31
3116 3181 4.551702 TCAGGCAACATACACACACTAT 57.448 40.909 0.00 0.00 41.41 2.12
3118 3183 2.928801 TCAGGCAACATACACACACT 57.071 45.000 0.00 0.00 41.41 3.55
3119 3184 5.586243 AGATAATCAGGCAACATACACACAC 59.414 40.000 0.00 0.00 41.41 3.82
3120 3185 5.744171 AGATAATCAGGCAACATACACACA 58.256 37.500 0.00 0.00 41.41 3.72
3121 3186 6.683974 AAGATAATCAGGCAACATACACAC 57.316 37.500 0.00 0.00 41.41 3.82
3122 3187 8.839343 CAATAAGATAATCAGGCAACATACACA 58.161 33.333 0.00 0.00 41.41 3.72
3228 3365 1.612676 CCATGGACATGCATGGTAGG 58.387 55.000 29.41 18.73 42.42 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.