Multiple sequence alignment - TraesCS2D01G324500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G324500 chr2D 100.000 2162 0 0 1 2162 417213994 417211833 0.000000e+00 3993
1 TraesCS2D01G324500 chr2A 86.575 1810 125 65 380 2162 572704968 572706686 0.000000e+00 1888
2 TraesCS2D01G324500 chr2B 94.940 830 32 7 1340 2162 489031527 489030701 0.000000e+00 1291
3 TraesCS2D01G324500 chr2B 96.024 654 22 4 690 1342 489032300 489031650 0.000000e+00 1061
4 TraesCS2D01G324500 chr1B 85.758 330 36 7 1840 2162 41525426 41525751 2.660000e-89 339
5 TraesCS2D01G324500 chr1D 73.543 669 117 46 3 627 46460479 46459827 1.310000e-47 200
6 TraesCS2D01G324500 chr5D 83.486 218 27 8 209 423 450214155 450214366 6.090000e-46 195
7 TraesCS2D01G324500 chr5D 79.817 218 34 9 187 397 539863806 539863592 1.340000e-32 150
8 TraesCS2D01G324500 chr1A 76.145 415 72 22 8 411 46255160 46254762 2.190000e-45 193
9 TraesCS2D01G324500 chr7B 84.659 176 21 4 218 392 40289180 40289010 1.030000e-38 171
10 TraesCS2D01G324500 chr6D 80.569 211 34 6 190 397 60551316 60551110 2.870000e-34 156
11 TraesCS2D01G324500 chr7D 75.393 382 61 21 107 464 590816219 590816591 1.030000e-33 154
12 TraesCS2D01G324500 chr3B 77.600 250 46 8 217 462 148065511 148065268 2.240000e-30 143
13 TraesCS2D01G324500 chr4B 79.091 220 31 14 200 412 17453469 17453258 1.040000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G324500 chr2D 417211833 417213994 2161 True 3993 3993 100.000 1 2162 1 chr2D.!!$R1 2161
1 TraesCS2D01G324500 chr2A 572704968 572706686 1718 False 1888 1888 86.575 380 2162 1 chr2A.!!$F1 1782
2 TraesCS2D01G324500 chr2B 489030701 489032300 1599 True 1176 1291 95.482 690 2162 2 chr2B.!!$R1 1472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 930 0.175302 AGACTCGCAGAAGCATCCAG 59.825 55.0 0.0 0.0 42.27 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 2060 0.178938 TGGTAACACCCCTGTCCGTA 60.179 55.0 0.0 0.0 46.17 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.445275 AAACATATAACAGTGGAATTATCGCA 57.555 30.769 0.00 0.00 0.00 5.10
53 54 8.445275 AACATATAACAGTGGAATTATCGCAA 57.555 30.769 0.00 0.00 0.00 4.85
54 55 8.445275 ACATATAACAGTGGAATTATCGCAAA 57.555 30.769 0.00 0.00 0.00 3.68
55 56 8.898761 ACATATAACAGTGGAATTATCGCAAAA 58.101 29.630 0.00 0.00 0.00 2.44
56 57 9.729023 CATATAACAGTGGAATTATCGCAAAAA 57.271 29.630 0.00 0.00 0.00 1.94
82 83 9.586435 AACAAGTTTCCTAAGAAAGAATTTGTG 57.414 29.630 0.00 0.00 42.60 3.33
83 84 8.197439 ACAAGTTTCCTAAGAAAGAATTTGTGG 58.803 33.333 0.00 0.00 42.60 4.17
84 85 6.749139 AGTTTCCTAAGAAAGAATTTGTGGC 58.251 36.000 0.00 0.00 42.60 5.01
85 86 6.323739 AGTTTCCTAAGAAAGAATTTGTGGCA 59.676 34.615 0.00 0.00 42.60 4.92
86 87 6.916360 TTCCTAAGAAAGAATTTGTGGCAT 57.084 33.333 0.00 0.00 39.27 4.40
87 88 6.916360 TCCTAAGAAAGAATTTGTGGCATT 57.084 33.333 0.00 0.00 39.27 3.56
88 89 7.301868 TCCTAAGAAAGAATTTGTGGCATTT 57.698 32.000 0.00 0.00 39.27 2.32
89 90 7.734942 TCCTAAGAAAGAATTTGTGGCATTTT 58.265 30.769 0.00 0.00 39.27 1.82
90 91 7.656948 TCCTAAGAAAGAATTTGTGGCATTTTG 59.343 33.333 0.00 0.00 39.27 2.44
91 92 7.442062 CCTAAGAAAGAATTTGTGGCATTTTGT 59.558 33.333 0.00 0.00 39.27 2.83
92 93 7.628769 AAGAAAGAATTTGTGGCATTTTGTT 57.371 28.000 0.00 0.00 39.27 2.83
93 94 8.729805 AAGAAAGAATTTGTGGCATTTTGTTA 57.270 26.923 0.00 0.00 39.27 2.41
94 95 8.141835 AGAAAGAATTTGTGGCATTTTGTTAC 57.858 30.769 0.00 0.00 39.27 2.50
95 96 6.859420 AAGAATTTGTGGCATTTTGTTACC 57.141 33.333 0.00 0.00 0.00 2.85
96 97 5.304778 AGAATTTGTGGCATTTTGTTACCC 58.695 37.500 0.00 0.00 0.00 3.69
97 98 4.972751 ATTTGTGGCATTTTGTTACCCT 57.027 36.364 0.00 0.00 0.00 4.34
98 99 4.762289 TTTGTGGCATTTTGTTACCCTT 57.238 36.364 0.00 0.00 0.00 3.95
99 100 3.742433 TGTGGCATTTTGTTACCCTTG 57.258 42.857 0.00 0.00 0.00 3.61
100 101 3.300388 TGTGGCATTTTGTTACCCTTGA 58.700 40.909 0.00 0.00 0.00 3.02
101 102 3.706594 TGTGGCATTTTGTTACCCTTGAA 59.293 39.130 0.00 0.00 0.00 2.69
102 103 4.202202 TGTGGCATTTTGTTACCCTTGAAG 60.202 41.667 0.00 0.00 0.00 3.02
103 104 4.038642 GTGGCATTTTGTTACCCTTGAAGA 59.961 41.667 0.00 0.00 0.00 2.87
104 105 4.651503 TGGCATTTTGTTACCCTTGAAGAA 59.348 37.500 0.00 0.00 0.00 2.52
105 106 5.221422 TGGCATTTTGTTACCCTTGAAGAAG 60.221 40.000 0.00 0.00 0.00 2.85
106 107 5.010617 GGCATTTTGTTACCCTTGAAGAAGA 59.989 40.000 0.00 0.00 0.00 2.87
107 108 6.462347 GGCATTTTGTTACCCTTGAAGAAGAA 60.462 38.462 0.00 0.00 0.00 2.52
108 109 6.983890 GCATTTTGTTACCCTTGAAGAAGAAA 59.016 34.615 0.00 0.00 0.00 2.52
109 110 7.169813 GCATTTTGTTACCCTTGAAGAAGAAAG 59.830 37.037 0.00 0.00 0.00 2.62
110 111 6.709018 TTTGTTACCCTTGAAGAAGAAAGG 57.291 37.500 0.00 0.00 42.29 3.11
111 112 5.640158 TGTTACCCTTGAAGAAGAAAGGA 57.360 39.130 3.01 0.00 44.93 3.36
112 113 6.008696 TGTTACCCTTGAAGAAGAAAGGAA 57.991 37.500 3.01 0.00 44.93 3.36
113 114 5.826208 TGTTACCCTTGAAGAAGAAAGGAAC 59.174 40.000 3.01 1.95 44.93 3.62
114 115 4.797912 ACCCTTGAAGAAGAAAGGAACT 57.202 40.909 3.01 0.00 44.93 3.01
115 116 4.720046 ACCCTTGAAGAAGAAAGGAACTC 58.280 43.478 3.01 0.00 44.93 3.01
116 117 4.166144 ACCCTTGAAGAAGAAAGGAACTCA 59.834 41.667 3.01 0.00 44.93 3.41
117 118 5.133221 CCCTTGAAGAAGAAAGGAACTCAA 58.867 41.667 3.01 0.00 44.93 3.02
118 119 5.772169 CCCTTGAAGAAGAAAGGAACTCAAT 59.228 40.000 3.01 0.00 44.93 2.57
119 120 6.942576 CCCTTGAAGAAGAAAGGAACTCAATA 59.057 38.462 3.01 0.00 44.93 1.90
120 121 7.448469 CCCTTGAAGAAGAAAGGAACTCAATAA 59.552 37.037 3.01 0.00 44.93 1.40
121 122 9.018582 CCTTGAAGAAGAAAGGAACTCAATAAT 57.981 33.333 0.00 0.00 44.93 1.28
173 174 7.305813 TGTAAGTAACAATGAACTAGGGACA 57.694 36.000 0.00 0.00 34.29 4.02
174 175 7.913789 TGTAAGTAACAATGAACTAGGGACAT 58.086 34.615 0.00 0.00 34.29 3.06
175 176 8.038944 TGTAAGTAACAATGAACTAGGGACATC 58.961 37.037 0.00 0.00 34.29 3.06
176 177 5.661458 AGTAACAATGAACTAGGGACATCG 58.339 41.667 0.00 0.00 0.00 3.84
177 178 4.819105 AACAATGAACTAGGGACATCGA 57.181 40.909 0.00 0.00 0.00 3.59
178 179 5.359194 AACAATGAACTAGGGACATCGAT 57.641 39.130 0.00 0.00 0.00 3.59
179 180 6.479972 AACAATGAACTAGGGACATCGATA 57.520 37.500 0.00 0.00 0.00 2.92
180 181 5.844004 ACAATGAACTAGGGACATCGATAC 58.156 41.667 0.00 0.00 0.00 2.24
181 182 5.598830 ACAATGAACTAGGGACATCGATACT 59.401 40.000 0.00 0.00 0.00 2.12
182 183 6.776116 ACAATGAACTAGGGACATCGATACTA 59.224 38.462 0.00 0.00 0.00 1.82
183 184 6.821031 ATGAACTAGGGACATCGATACTAC 57.179 41.667 0.00 0.00 0.00 2.73
184 185 5.687780 TGAACTAGGGACATCGATACTACA 58.312 41.667 0.00 0.00 0.00 2.74
185 186 6.304624 TGAACTAGGGACATCGATACTACAT 58.695 40.000 0.00 0.00 0.00 2.29
186 187 6.776116 TGAACTAGGGACATCGATACTACATT 59.224 38.462 0.00 0.00 0.00 2.71
187 188 7.287005 TGAACTAGGGACATCGATACTACATTT 59.713 37.037 0.00 0.00 0.00 2.32
188 189 7.598759 ACTAGGGACATCGATACTACATTTT 57.401 36.000 0.00 0.00 0.00 1.82
189 190 8.701908 ACTAGGGACATCGATACTACATTTTA 57.298 34.615 0.00 0.00 0.00 1.52
190 191 9.139734 ACTAGGGACATCGATACTACATTTTAA 57.860 33.333 0.00 0.00 0.00 1.52
191 192 9.627395 CTAGGGACATCGATACTACATTTTAAG 57.373 37.037 0.00 0.00 0.00 1.85
192 193 8.246430 AGGGACATCGATACTACATTTTAAGA 57.754 34.615 0.00 0.00 0.00 2.10
193 194 8.701895 AGGGACATCGATACTACATTTTAAGAA 58.298 33.333 0.00 0.00 0.00 2.52
194 195 8.979574 GGGACATCGATACTACATTTTAAGAAG 58.020 37.037 0.00 0.00 0.00 2.85
195 196 9.745880 GGACATCGATACTACATTTTAAGAAGA 57.254 33.333 0.00 0.00 0.00 2.87
233 234 6.983474 AAAAATAAAACTTGCACACAGCTT 57.017 29.167 0.00 0.00 45.94 3.74
234 235 6.983474 AAAATAAAACTTGCACACAGCTTT 57.017 29.167 0.00 0.00 45.94 3.51
235 236 8.485976 AAAAATAAAACTTGCACACAGCTTTA 57.514 26.923 0.00 0.00 45.94 1.85
236 237 7.463469 AAATAAAACTTGCACACAGCTTTAC 57.537 32.000 0.00 0.00 45.94 2.01
237 238 4.448537 AAAACTTGCACACAGCTTTACA 57.551 36.364 0.00 0.00 45.94 2.41
238 239 3.420839 AACTTGCACACAGCTTTACAC 57.579 42.857 0.00 0.00 45.94 2.90
239 240 2.643551 ACTTGCACACAGCTTTACACT 58.356 42.857 0.00 0.00 45.94 3.55
240 241 3.804036 ACTTGCACACAGCTTTACACTA 58.196 40.909 0.00 0.00 45.94 2.74
241 242 4.196193 ACTTGCACACAGCTTTACACTAA 58.804 39.130 0.00 0.00 45.94 2.24
242 243 4.638421 ACTTGCACACAGCTTTACACTAAA 59.362 37.500 0.00 0.00 45.94 1.85
243 244 5.124776 ACTTGCACACAGCTTTACACTAAAA 59.875 36.000 0.00 0.00 45.94 1.52
244 245 5.766150 TGCACACAGCTTTACACTAAAAT 57.234 34.783 0.00 0.00 45.94 1.82
245 246 6.142818 TGCACACAGCTTTACACTAAAATT 57.857 33.333 0.00 0.00 45.94 1.82
246 247 5.976534 TGCACACAGCTTTACACTAAAATTG 59.023 36.000 0.00 0.00 45.94 2.32
247 248 5.107875 GCACACAGCTTTACACTAAAATTGC 60.108 40.000 0.00 0.00 41.15 3.56
248 249 5.976534 CACACAGCTTTACACTAAAATTGCA 59.023 36.000 0.00 0.00 0.00 4.08
249 250 6.475076 CACACAGCTTTACACTAAAATTGCAA 59.525 34.615 0.00 0.00 0.00 4.08
250 251 6.475402 ACACAGCTTTACACTAAAATTGCAAC 59.525 34.615 0.00 0.00 0.00 4.17
251 252 6.697019 CACAGCTTTACACTAAAATTGCAACT 59.303 34.615 0.00 0.00 0.00 3.16
252 253 7.222611 CACAGCTTTACACTAAAATTGCAACTT 59.777 33.333 0.00 0.00 0.00 2.66
253 254 7.763985 ACAGCTTTACACTAAAATTGCAACTTT 59.236 29.630 11.04 11.04 0.00 2.66
254 255 8.603181 CAGCTTTACACTAAAATTGCAACTTTT 58.397 29.630 11.54 15.43 0.00 2.27
255 256 9.161629 AGCTTTACACTAAAATTGCAACTTTTT 57.838 25.926 11.54 12.78 0.00 1.94
256 257 9.209297 GCTTTACACTAAAATTGCAACTTTTTG 57.791 29.630 11.54 15.62 35.62 2.44
260 261 8.996024 ACACTAAAATTGCAACTTTTTGTAGT 57.004 26.923 11.54 9.07 32.44 2.73
261 262 9.430623 ACACTAAAATTGCAACTTTTTGTAGTT 57.569 25.926 11.54 7.21 38.87 2.24
297 298 7.684062 AATCATGTAATAGTGCATTTTTCGC 57.316 32.000 0.00 0.00 0.00 4.70
298 299 6.188400 TCATGTAATAGTGCATTTTTCGCA 57.812 33.333 0.00 0.00 36.94 5.10
299 300 6.794374 TCATGTAATAGTGCATTTTTCGCAT 58.206 32.000 0.00 0.00 42.32 4.73
300 301 7.924940 TCATGTAATAGTGCATTTTTCGCATA 58.075 30.769 0.00 0.00 42.32 3.14
301 302 8.567104 TCATGTAATAGTGCATTTTTCGCATAT 58.433 29.630 0.00 0.00 42.32 1.78
302 303 9.824534 CATGTAATAGTGCATTTTTCGCATATA 57.175 29.630 0.00 0.00 42.32 0.86
310 311 9.195411 AGTGCATTTTTCGCATATATTTTATGG 57.805 29.630 0.00 0.00 42.32 2.74
311 312 8.977505 GTGCATTTTTCGCATATATTTTATGGT 58.022 29.630 0.00 0.00 42.32 3.55
342 343 7.068692 GTGTATACATTTACACTCACCCAAC 57.931 40.000 9.18 0.00 45.48 3.77
343 344 6.651643 GTGTATACATTTACACTCACCCAACA 59.348 38.462 9.18 0.00 45.48 3.33
344 345 7.335924 GTGTATACATTTACACTCACCCAACAT 59.664 37.037 9.18 0.00 45.48 2.71
345 346 7.551262 TGTATACATTTACACTCACCCAACATC 59.449 37.037 0.08 0.00 0.00 3.06
346 347 4.079253 ACATTTACACTCACCCAACATCC 58.921 43.478 0.00 0.00 0.00 3.51
347 348 2.871096 TTACACTCACCCAACATCCC 57.129 50.000 0.00 0.00 0.00 3.85
348 349 1.735926 TACACTCACCCAACATCCCA 58.264 50.000 0.00 0.00 0.00 4.37
349 350 0.850100 ACACTCACCCAACATCCCAA 59.150 50.000 0.00 0.00 0.00 4.12
350 351 1.216678 ACACTCACCCAACATCCCAAA 59.783 47.619 0.00 0.00 0.00 3.28
351 352 2.315176 CACTCACCCAACATCCCAAAA 58.685 47.619 0.00 0.00 0.00 2.44
352 353 2.697751 CACTCACCCAACATCCCAAAAA 59.302 45.455 0.00 0.00 0.00 1.94
353 354 3.324556 CACTCACCCAACATCCCAAAAAT 59.675 43.478 0.00 0.00 0.00 1.82
354 355 4.526262 CACTCACCCAACATCCCAAAAATA 59.474 41.667 0.00 0.00 0.00 1.40
355 356 5.187576 CACTCACCCAACATCCCAAAAATAT 59.812 40.000 0.00 0.00 0.00 1.28
356 357 5.784906 ACTCACCCAACATCCCAAAAATATT 59.215 36.000 0.00 0.00 0.00 1.28
357 358 6.070824 ACTCACCCAACATCCCAAAAATATTC 60.071 38.462 0.00 0.00 0.00 1.75
358 359 5.782331 TCACCCAACATCCCAAAAATATTCA 59.218 36.000 0.00 0.00 0.00 2.57
359 360 6.270927 TCACCCAACATCCCAAAAATATTCAA 59.729 34.615 0.00 0.00 0.00 2.69
360 361 6.939163 CACCCAACATCCCAAAAATATTCAAA 59.061 34.615 0.00 0.00 0.00 2.69
361 362 7.446625 CACCCAACATCCCAAAAATATTCAAAA 59.553 33.333 0.00 0.00 0.00 2.44
362 363 8.001292 ACCCAACATCCCAAAAATATTCAAAAA 58.999 29.630 0.00 0.00 0.00 1.94
363 364 8.513774 CCCAACATCCCAAAAATATTCAAAAAG 58.486 33.333 0.00 0.00 0.00 2.27
364 365 9.282569 CCAACATCCCAAAAATATTCAAAAAGA 57.717 29.630 0.00 0.00 0.00 2.52
435 438 1.097722 AAAGGGAGAGAGAGGAGGGT 58.902 55.000 0.00 0.00 0.00 4.34
436 439 1.097722 AAGGGAGAGAGAGGAGGGTT 58.902 55.000 0.00 0.00 0.00 4.11
438 441 0.689412 GGGAGAGAGAGGAGGGTTGG 60.689 65.000 0.00 0.00 0.00 3.77
439 442 0.689412 GGAGAGAGAGGAGGGTTGGG 60.689 65.000 0.00 0.00 0.00 4.12
441 444 0.494095 AGAGAGAGGAGGGTTGGGTT 59.506 55.000 0.00 0.00 0.00 4.11
443 446 1.002011 GAGAGGAGGGTTGGGTTGC 60.002 63.158 0.00 0.00 0.00 4.17
462 465 1.098050 CACAGGTAATGGGCTTCAGC 58.902 55.000 0.00 0.00 41.14 4.26
476 479 2.883888 GCTTCAGCCTGTTGGGGAATTA 60.884 50.000 0.00 0.00 35.12 1.40
480 483 3.099141 CAGCCTGTTGGGGAATTAACAT 58.901 45.455 0.00 0.00 36.34 2.71
481 484 3.131046 CAGCCTGTTGGGGAATTAACATC 59.869 47.826 0.00 0.00 36.34 3.06
482 485 3.011708 AGCCTGTTGGGGAATTAACATCT 59.988 43.478 0.00 0.00 36.34 2.90
527 530 5.505173 AACAGATCAAAACAACTCACCAG 57.495 39.130 0.00 0.00 0.00 4.00
528 531 4.780815 ACAGATCAAAACAACTCACCAGA 58.219 39.130 0.00 0.00 0.00 3.86
529 532 5.192927 ACAGATCAAAACAACTCACCAGAA 58.807 37.500 0.00 0.00 0.00 3.02
530 533 5.297776 ACAGATCAAAACAACTCACCAGAAG 59.702 40.000 0.00 0.00 0.00 2.85
531 534 5.528690 CAGATCAAAACAACTCACCAGAAGA 59.471 40.000 0.00 0.00 0.00 2.87
532 535 6.038603 CAGATCAAAACAACTCACCAGAAGAA 59.961 38.462 0.00 0.00 0.00 2.52
533 536 5.818136 TCAAAACAACTCACCAGAAGAAG 57.182 39.130 0.00 0.00 0.00 2.85
563 566 6.395426 ACACAAATCTCAAAGCAGAAATCA 57.605 33.333 0.00 0.00 0.00 2.57
596 600 6.695292 AAAAATTAGCTGACGCAAAATCAG 57.305 33.333 0.00 0.00 45.40 2.90
602 606 3.066621 AGCTGACGCAAAATCAGTTTTCA 59.933 39.130 4.10 0.00 44.60 2.69
607 611 3.122297 CGCAAAATCAGTTTTCAGGCAA 58.878 40.909 0.00 0.00 35.41 4.52
608 612 3.060339 CGCAAAATCAGTTTTCAGGCAAC 60.060 43.478 0.00 0.00 35.41 4.17
610 614 5.288804 GCAAAATCAGTTTTCAGGCAACTA 58.711 37.500 0.00 0.00 39.44 2.24
697 702 6.992063 ACACTGAAGCTAATCAAACTATGG 57.008 37.500 0.00 0.00 0.00 2.74
700 705 8.100791 ACACTGAAGCTAATCAAACTATGGTTA 58.899 33.333 0.00 0.00 33.39 2.85
701 706 9.113838 CACTGAAGCTAATCAAACTATGGTTAT 57.886 33.333 0.00 0.00 34.17 1.89
725 730 1.676529 TCAAAAATGACGGGCGTTCAA 59.323 42.857 0.00 0.00 0.00 2.69
817 826 2.293170 GAAGCCCTCCATAAGCTGAAC 58.707 52.381 0.00 0.00 36.84 3.18
920 930 0.175302 AGACTCGCAGAAGCATCCAG 59.825 55.000 0.00 0.00 42.27 3.86
944 955 3.495670 ACAAGAGAAGAAGTCGATCGG 57.504 47.619 16.41 0.00 0.00 4.18
1208 1219 1.508632 TCTTTCGGCTTCAGTTTCCG 58.491 50.000 0.00 0.00 44.16 4.30
1249 1260 1.021968 GTTTCCACCACTCGTGCTTT 58.978 50.000 0.00 0.00 41.53 3.51
1268 1279 5.543790 TGCTTTCATATATGTAGCTCCTCCA 59.456 40.000 27.17 13.95 37.40 3.86
1272 1283 6.402981 TCATATATGTAGCTCCTCCAGGTA 57.597 41.667 12.42 0.00 33.71 3.08
1334 1357 8.575649 TTGTATTCTGTAATTTCCTCCCTTTC 57.424 34.615 0.00 0.00 0.00 2.62
1379 1528 1.572085 CTGTCTTGAAGCGTGGCTGG 61.572 60.000 0.00 0.00 39.62 4.85
1391 1540 0.807496 GTGGCTGGTTGCATCTCTTC 59.193 55.000 0.00 0.00 45.15 2.87
1412 1561 4.626042 TCTGTTTTTGTTGTTGTTGCTGT 58.374 34.783 0.00 0.00 0.00 4.40
1417 1566 3.377346 TTGTTGTTGTTGCTGTTGTGT 57.623 38.095 0.00 0.00 0.00 3.72
1420 1569 2.254918 TGTTGTTGCTGTTGTGTTCG 57.745 45.000 0.00 0.00 0.00 3.95
1421 1570 0.913876 GTTGTTGCTGTTGTGTTCGC 59.086 50.000 0.00 0.00 0.00 4.70
1448 1597 8.414003 TGCTGATTACATCTCTTTTACGACTAT 58.586 33.333 0.00 0.00 0.00 2.12
1449 1598 9.894783 GCTGATTACATCTCTTTTACGACTATA 57.105 33.333 0.00 0.00 0.00 1.31
1511 1660 1.968050 ATCGCCTAACCTCCAACGGG 61.968 60.000 0.00 0.00 0.00 5.28
1592 1745 3.997021 ACAAGAGACAATTTAGCTCCACG 59.003 43.478 0.00 0.00 0.00 4.94
1598 1751 3.067106 ACAATTTAGCTCCACGAGTGTG 58.933 45.455 0.00 0.00 46.00 3.82
1603 1756 0.317479 AGCTCCACGAGTGTGTAACC 59.683 55.000 2.36 0.00 44.92 2.85
1620 1773 2.403252 ACCGGAATACCTGAAAGCAG 57.597 50.000 9.46 0.00 41.93 4.24
1697 1850 1.447140 GTGGAACGCCGATGCAGTA 60.447 57.895 0.00 0.00 37.32 2.74
1714 1867 1.271656 AGTACCGTCCTACAACAGCAC 59.728 52.381 0.00 0.00 0.00 4.40
1898 2057 1.869342 GCATTGCCACAGAACACCAAC 60.869 52.381 0.00 0.00 0.00 3.77
1901 2060 0.106268 TGCCACAGAACACCAACCAT 60.106 50.000 0.00 0.00 0.00 3.55
1910 2069 0.323629 ACACCAACCATACGGACAGG 59.676 55.000 0.00 0.00 35.59 4.00
1913 2072 1.559065 CCAACCATACGGACAGGGGT 61.559 60.000 0.00 0.00 35.59 4.95
2092 2260 4.197750 AGATTTTGAGGTAGCAGATGCAG 58.802 43.478 7.68 0.00 45.16 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.549078 TGCGATAATTCCACTGTTATATGTTTA 57.451 29.630 0.00 0.00 0.00 2.01
27 28 8.445275 TGCGATAATTCCACTGTTATATGTTT 57.555 30.769 0.00 0.00 0.00 2.83
28 29 8.445275 TTGCGATAATTCCACTGTTATATGTT 57.555 30.769 0.00 0.00 0.00 2.71
29 30 8.445275 TTTGCGATAATTCCACTGTTATATGT 57.555 30.769 0.00 0.00 0.00 2.29
30 31 9.729023 TTTTTGCGATAATTCCACTGTTATATG 57.271 29.630 0.00 0.00 0.00 1.78
56 57 9.586435 CACAAATTCTTTCTTAGGAAACTTGTT 57.414 29.630 0.00 0.00 43.67 2.83
57 58 8.197439 CCACAAATTCTTTCTTAGGAAACTTGT 58.803 33.333 0.00 2.27 43.67 3.16
58 59 7.169813 GCCACAAATTCTTTCTTAGGAAACTTG 59.830 37.037 0.00 1.73 43.67 3.16
59 60 7.147742 TGCCACAAATTCTTTCTTAGGAAACTT 60.148 33.333 0.00 0.00 43.67 2.66
61 62 6.512297 TGCCACAAATTCTTTCTTAGGAAAC 58.488 36.000 0.00 0.00 36.63 2.78
62 63 6.723298 TGCCACAAATTCTTTCTTAGGAAA 57.277 33.333 0.00 0.00 38.90 3.13
63 64 6.916360 ATGCCACAAATTCTTTCTTAGGAA 57.084 33.333 0.00 0.00 0.00 3.36
64 65 6.916360 AATGCCACAAATTCTTTCTTAGGA 57.084 33.333 0.00 0.00 0.00 2.94
65 66 7.442062 ACAAAATGCCACAAATTCTTTCTTAGG 59.558 33.333 0.00 0.00 0.00 2.69
66 67 8.369218 ACAAAATGCCACAAATTCTTTCTTAG 57.631 30.769 0.00 0.00 0.00 2.18
67 68 8.729805 AACAAAATGCCACAAATTCTTTCTTA 57.270 26.923 0.00 0.00 0.00 2.10
68 69 7.628769 AACAAAATGCCACAAATTCTTTCTT 57.371 28.000 0.00 0.00 0.00 2.52
69 70 7.226523 GGTAACAAAATGCCACAAATTCTTTCT 59.773 33.333 0.00 0.00 0.00 2.52
70 71 7.351981 GGTAACAAAATGCCACAAATTCTTTC 58.648 34.615 0.00 0.00 0.00 2.62
71 72 6.262049 GGGTAACAAAATGCCACAAATTCTTT 59.738 34.615 0.00 0.00 39.74 2.52
72 73 5.762711 GGGTAACAAAATGCCACAAATTCTT 59.237 36.000 0.00 0.00 39.74 2.52
73 74 5.071653 AGGGTAACAAAATGCCACAAATTCT 59.928 36.000 0.00 0.00 39.74 2.40
74 75 5.304778 AGGGTAACAAAATGCCACAAATTC 58.695 37.500 0.00 0.00 39.74 2.17
75 76 5.303259 AGGGTAACAAAATGCCACAAATT 57.697 34.783 0.00 0.00 39.74 1.82
76 77 4.972751 AGGGTAACAAAATGCCACAAAT 57.027 36.364 0.00 0.00 39.74 2.32
77 78 4.162320 TCAAGGGTAACAAAATGCCACAAA 59.838 37.500 0.00 0.00 39.74 2.83
78 79 3.706594 TCAAGGGTAACAAAATGCCACAA 59.293 39.130 0.00 0.00 39.74 3.33
79 80 3.300388 TCAAGGGTAACAAAATGCCACA 58.700 40.909 0.00 0.00 39.74 4.17
80 81 4.038642 TCTTCAAGGGTAACAAAATGCCAC 59.961 41.667 0.00 0.00 39.74 5.01
81 82 4.219115 TCTTCAAGGGTAACAAAATGCCA 58.781 39.130 0.00 0.00 39.74 4.92
82 83 4.864704 TCTTCAAGGGTAACAAAATGCC 57.135 40.909 0.00 0.00 39.74 4.40
83 84 6.084326 TCTTCTTCAAGGGTAACAAAATGC 57.916 37.500 0.00 0.00 39.74 3.56
84 85 7.653311 CCTTTCTTCTTCAAGGGTAACAAAATG 59.347 37.037 0.00 0.00 36.62 2.32
85 86 7.563556 TCCTTTCTTCTTCAAGGGTAACAAAAT 59.436 33.333 0.00 0.00 40.21 1.82
86 87 6.893005 TCCTTTCTTCTTCAAGGGTAACAAAA 59.107 34.615 0.00 0.00 40.21 2.44
87 88 6.428295 TCCTTTCTTCTTCAAGGGTAACAAA 58.572 36.000 0.00 0.00 40.21 2.83
88 89 6.008696 TCCTTTCTTCTTCAAGGGTAACAA 57.991 37.500 0.00 0.00 40.21 2.83
89 90 5.640158 TCCTTTCTTCTTCAAGGGTAACA 57.360 39.130 0.00 0.00 40.21 2.41
90 91 6.062749 AGTTCCTTTCTTCTTCAAGGGTAAC 58.937 40.000 0.00 0.00 40.21 2.50
91 92 6.126594 TGAGTTCCTTTCTTCTTCAAGGGTAA 60.127 38.462 0.00 0.00 40.21 2.85
92 93 5.368523 TGAGTTCCTTTCTTCTTCAAGGGTA 59.631 40.000 0.00 0.00 40.21 3.69
93 94 4.166144 TGAGTTCCTTTCTTCTTCAAGGGT 59.834 41.667 0.00 0.00 40.21 4.34
94 95 4.718961 TGAGTTCCTTTCTTCTTCAAGGG 58.281 43.478 0.00 0.00 40.21 3.95
95 96 6.890979 ATTGAGTTCCTTTCTTCTTCAAGG 57.109 37.500 0.00 0.00 41.04 3.61
149 150 7.305813 TGTCCCTAGTTCATTGTTACTTACA 57.694 36.000 0.00 0.00 34.12 2.41
150 151 7.222224 CGATGTCCCTAGTTCATTGTTACTTAC 59.778 40.741 0.00 0.00 0.00 2.34
151 152 7.123098 TCGATGTCCCTAGTTCATTGTTACTTA 59.877 37.037 0.00 0.00 0.00 2.24
152 153 6.070995 TCGATGTCCCTAGTTCATTGTTACTT 60.071 38.462 0.00 0.00 0.00 2.24
153 154 5.421056 TCGATGTCCCTAGTTCATTGTTACT 59.579 40.000 0.00 0.00 0.00 2.24
154 155 5.657474 TCGATGTCCCTAGTTCATTGTTAC 58.343 41.667 0.00 0.00 0.00 2.50
155 156 5.925506 TCGATGTCCCTAGTTCATTGTTA 57.074 39.130 0.00 0.00 0.00 2.41
156 157 4.819105 TCGATGTCCCTAGTTCATTGTT 57.181 40.909 0.00 0.00 0.00 2.83
157 158 5.598830 AGTATCGATGTCCCTAGTTCATTGT 59.401 40.000 8.54 0.00 0.00 2.71
158 159 6.090483 AGTATCGATGTCCCTAGTTCATTG 57.910 41.667 8.54 0.00 0.00 2.82
159 160 6.776116 TGTAGTATCGATGTCCCTAGTTCATT 59.224 38.462 8.54 0.00 0.00 2.57
160 161 6.304624 TGTAGTATCGATGTCCCTAGTTCAT 58.695 40.000 8.54 0.00 0.00 2.57
161 162 5.687780 TGTAGTATCGATGTCCCTAGTTCA 58.312 41.667 8.54 0.00 0.00 3.18
162 163 6.821031 ATGTAGTATCGATGTCCCTAGTTC 57.179 41.667 8.54 0.00 0.00 3.01
163 164 7.598759 AAATGTAGTATCGATGTCCCTAGTT 57.401 36.000 8.54 0.00 0.00 2.24
164 165 7.598759 AAAATGTAGTATCGATGTCCCTAGT 57.401 36.000 8.54 0.00 0.00 2.57
165 166 9.627395 CTTAAAATGTAGTATCGATGTCCCTAG 57.373 37.037 8.54 0.00 0.00 3.02
166 167 9.358406 TCTTAAAATGTAGTATCGATGTCCCTA 57.642 33.333 8.54 0.27 0.00 3.53
167 168 8.246430 TCTTAAAATGTAGTATCGATGTCCCT 57.754 34.615 8.54 1.24 0.00 4.20
168 169 8.882415 TTCTTAAAATGTAGTATCGATGTCCC 57.118 34.615 8.54 0.00 0.00 4.46
169 170 9.745880 TCTTCTTAAAATGTAGTATCGATGTCC 57.254 33.333 8.54 0.00 0.00 4.02
210 211 6.983474 AAGCTGTGTGCAAGTTTTATTTTT 57.017 29.167 0.00 0.00 45.94 1.94
211 212 6.983474 AAAGCTGTGTGCAAGTTTTATTTT 57.017 29.167 0.00 0.00 45.94 1.82
212 213 7.010091 GTGTAAAGCTGTGTGCAAGTTTTATTT 59.990 33.333 8.55 0.04 45.94 1.40
213 214 6.475402 GTGTAAAGCTGTGTGCAAGTTTTATT 59.525 34.615 8.55 0.00 45.94 1.40
214 215 5.977129 GTGTAAAGCTGTGTGCAAGTTTTAT 59.023 36.000 8.55 0.00 45.94 1.40
215 216 5.124776 AGTGTAAAGCTGTGTGCAAGTTTTA 59.875 36.000 2.80 2.80 45.94 1.52
216 217 4.082245 AGTGTAAAGCTGTGTGCAAGTTTT 60.082 37.500 4.46 4.46 45.94 2.43
217 218 3.443681 AGTGTAAAGCTGTGTGCAAGTTT 59.556 39.130 0.00 0.00 45.94 2.66
218 219 3.016736 AGTGTAAAGCTGTGTGCAAGTT 58.983 40.909 0.00 0.00 45.94 2.66
219 220 2.643551 AGTGTAAAGCTGTGTGCAAGT 58.356 42.857 0.00 0.00 45.94 3.16
220 221 4.811555 TTAGTGTAAAGCTGTGTGCAAG 57.188 40.909 0.00 0.00 45.94 4.01
221 222 5.568685 TTTTAGTGTAAAGCTGTGTGCAA 57.431 34.783 0.00 0.00 45.94 4.08
222 223 5.766150 ATTTTAGTGTAAAGCTGTGTGCA 57.234 34.783 0.00 0.00 45.94 4.57
223 224 5.107875 GCAATTTTAGTGTAAAGCTGTGTGC 60.108 40.000 0.00 0.00 43.29 4.57
224 225 5.976534 TGCAATTTTAGTGTAAAGCTGTGTG 59.023 36.000 0.00 0.00 0.00 3.82
225 226 6.142818 TGCAATTTTAGTGTAAAGCTGTGT 57.857 33.333 0.00 0.00 0.00 3.72
226 227 6.697019 AGTTGCAATTTTAGTGTAAAGCTGTG 59.303 34.615 0.59 0.00 0.00 3.66
227 228 6.805713 AGTTGCAATTTTAGTGTAAAGCTGT 58.194 32.000 0.59 0.00 0.00 4.40
228 229 7.698836 AAGTTGCAATTTTAGTGTAAAGCTG 57.301 32.000 0.59 0.00 0.00 4.24
229 230 8.716646 AAAAGTTGCAATTTTAGTGTAAAGCT 57.283 26.923 18.82 0.00 0.00 3.74
230 231 9.209297 CAAAAAGTTGCAATTTTAGTGTAAAGC 57.791 29.630 18.82 0.00 29.93 3.51
235 236 8.996024 ACTACAAAAAGTTGCAATTTTAGTGT 57.004 26.923 25.92 25.92 38.39 3.55
271 272 9.398170 GCGAAAAATGCACTATTACATGATTAT 57.602 29.630 0.00 0.00 0.00 1.28
272 273 8.401709 TGCGAAAAATGCACTATTACATGATTA 58.598 29.630 0.00 0.00 37.44 1.75
273 274 7.257003 TGCGAAAAATGCACTATTACATGATT 58.743 30.769 0.00 0.00 37.44 2.57
274 275 6.794374 TGCGAAAAATGCACTATTACATGAT 58.206 32.000 0.00 0.00 37.44 2.45
275 276 6.188400 TGCGAAAAATGCACTATTACATGA 57.812 33.333 0.00 0.00 37.44 3.07
276 277 8.732413 ATATGCGAAAAATGCACTATTACATG 57.268 30.769 0.00 0.00 46.57 3.21
284 285 9.195411 CCATAAAATATATGCGAAAAATGCACT 57.805 29.630 0.00 0.00 46.57 4.40
285 286 8.977505 ACCATAAAATATATGCGAAAAATGCAC 58.022 29.630 0.00 0.00 46.57 4.57
319 320 6.770542 TGTTGGGTGAGTGTAAATGTATACA 58.229 36.000 8.27 8.27 33.52 2.29
320 321 7.012044 GGATGTTGGGTGAGTGTAAATGTATAC 59.988 40.741 0.00 0.00 0.00 1.47
321 322 7.051623 GGATGTTGGGTGAGTGTAAATGTATA 58.948 38.462 0.00 0.00 0.00 1.47
322 323 5.885912 GGATGTTGGGTGAGTGTAAATGTAT 59.114 40.000 0.00 0.00 0.00 2.29
323 324 5.250200 GGATGTTGGGTGAGTGTAAATGTA 58.750 41.667 0.00 0.00 0.00 2.29
324 325 4.079253 GGATGTTGGGTGAGTGTAAATGT 58.921 43.478 0.00 0.00 0.00 2.71
325 326 3.443681 GGGATGTTGGGTGAGTGTAAATG 59.556 47.826 0.00 0.00 0.00 2.32
326 327 3.075283 TGGGATGTTGGGTGAGTGTAAAT 59.925 43.478 0.00 0.00 0.00 1.40
327 328 2.443632 TGGGATGTTGGGTGAGTGTAAA 59.556 45.455 0.00 0.00 0.00 2.01
328 329 2.058705 TGGGATGTTGGGTGAGTGTAA 58.941 47.619 0.00 0.00 0.00 2.41
329 330 1.735926 TGGGATGTTGGGTGAGTGTA 58.264 50.000 0.00 0.00 0.00 2.90
330 331 0.850100 TTGGGATGTTGGGTGAGTGT 59.150 50.000 0.00 0.00 0.00 3.55
331 332 1.993956 TTTGGGATGTTGGGTGAGTG 58.006 50.000 0.00 0.00 0.00 3.51
332 333 2.765689 TTTTGGGATGTTGGGTGAGT 57.234 45.000 0.00 0.00 0.00 3.41
333 334 5.937975 ATATTTTTGGGATGTTGGGTGAG 57.062 39.130 0.00 0.00 0.00 3.51
334 335 5.782331 TGAATATTTTTGGGATGTTGGGTGA 59.218 36.000 0.00 0.00 0.00 4.02
335 336 6.047511 TGAATATTTTTGGGATGTTGGGTG 57.952 37.500 0.00 0.00 0.00 4.61
336 337 6.694445 TTGAATATTTTTGGGATGTTGGGT 57.306 33.333 0.00 0.00 0.00 4.51
337 338 7.992754 TTTTGAATATTTTTGGGATGTTGGG 57.007 32.000 0.00 0.00 0.00 4.12
338 339 9.282569 TCTTTTTGAATATTTTTGGGATGTTGG 57.717 29.630 0.00 0.00 0.00 3.77
401 402 6.663523 TCTCTCCCTTTGTTCTTTTCTGTTTT 59.336 34.615 0.00 0.00 0.00 2.43
411 414 3.440127 CTCCTCTCTCTCCCTTTGTTCT 58.560 50.000 0.00 0.00 0.00 3.01
421 424 0.041982 ACCCAACCCTCCTCTCTCTC 59.958 60.000 0.00 0.00 0.00 3.20
435 438 1.626686 CCATTACCTGTGCAACCCAA 58.373 50.000 0.00 0.00 34.36 4.12
436 439 0.251564 CCCATTACCTGTGCAACCCA 60.252 55.000 0.00 0.00 34.36 4.51
438 441 0.611896 AGCCCATTACCTGTGCAACC 60.612 55.000 0.00 0.00 34.36 3.77
439 442 1.202348 GAAGCCCATTACCTGTGCAAC 59.798 52.381 0.00 0.00 29.49 4.17
441 444 0.403655 TGAAGCCCATTACCTGTGCA 59.596 50.000 0.00 0.00 29.49 4.57
443 446 1.098050 GCTGAAGCCCATTACCTGTG 58.902 55.000 0.00 0.00 34.31 3.66
459 462 2.524306 TGTTAATTCCCCAACAGGCTG 58.476 47.619 14.16 14.16 31.29 4.85
462 465 7.660030 ATTTAGATGTTAATTCCCCAACAGG 57.340 36.000 0.00 0.00 38.01 4.00
463 466 9.369904 CAAATTTAGATGTTAATTCCCCAACAG 57.630 33.333 0.00 0.00 38.01 3.16
464 467 8.875168 ACAAATTTAGATGTTAATTCCCCAACA 58.125 29.630 0.00 0.00 38.89 3.33
476 479 7.905604 TCGACTGATCACAAATTTAGATGTT 57.094 32.000 9.34 0.00 0.00 2.71
505 508 5.192927 TCTGGTGAGTTGTTTTGATCTGTT 58.807 37.500 0.00 0.00 0.00 3.16
506 509 4.780815 TCTGGTGAGTTGTTTTGATCTGT 58.219 39.130 0.00 0.00 0.00 3.41
510 513 6.122277 TCTTCTTCTGGTGAGTTGTTTTGAT 58.878 36.000 0.00 0.00 0.00 2.57
515 518 6.834168 TTTTTCTTCTTCTGGTGAGTTGTT 57.166 33.333 0.00 0.00 0.00 2.83
542 545 7.663827 TCATTGATTTCTGCTTTGAGATTTGT 58.336 30.769 0.00 0.00 0.00 2.83
578 582 4.829064 AAACTGATTTTGCGTCAGCTAA 57.171 36.364 3.23 0.00 45.42 3.09
587 591 4.122046 AGTTGCCTGAAAACTGATTTTGC 58.878 39.130 0.00 0.00 38.17 3.68
596 600 7.321745 AGCTATATGTTAGTTGCCTGAAAAC 57.678 36.000 0.00 0.00 0.00 2.43
602 606 9.799106 ATCATTTTAGCTATATGTTAGTTGCCT 57.201 29.630 13.19 0.00 0.00 4.75
697 702 6.031471 ACGCCCGTCATTTTTGAATTATAAC 58.969 36.000 0.00 0.00 0.00 1.89
700 705 4.712122 ACGCCCGTCATTTTTGAATTAT 57.288 36.364 0.00 0.00 0.00 1.28
701 706 4.023107 TGAACGCCCGTCATTTTTGAATTA 60.023 37.500 0.00 0.00 0.00 1.40
920 930 4.433544 CGATCGACTTCTTCTCTTGTTTGC 60.434 45.833 10.26 0.00 0.00 3.68
971 982 1.061253 CTCGGTCGTCTCTTCGCTC 59.939 63.158 0.00 0.00 0.00 5.03
975 986 2.100603 CCGCTCGGTCGTCTCTTC 59.899 66.667 0.00 0.00 0.00 2.87
1183 1194 3.194005 ACTGAAGCCGAAAGAAACTGA 57.806 42.857 0.00 0.00 0.00 3.41
1187 1198 3.982576 GGAAACTGAAGCCGAAAGAAA 57.017 42.857 0.00 0.00 0.00 2.52
1208 1219 5.880341 ACGAATTAAGCTGCAAAGGAATAC 58.120 37.500 1.02 0.00 0.00 1.89
1249 1260 5.276694 ACCTGGAGGAGCTACATATATGA 57.723 43.478 19.63 2.59 38.94 2.15
1345 1368 9.587772 GCTTCAAGACAGACAAAGAACTATATA 57.412 33.333 0.00 0.00 0.00 0.86
1379 1528 5.807011 ACAACAAAAACAGAAGAGATGCAAC 59.193 36.000 0.00 0.00 0.00 4.17
1391 1540 4.988708 ACAGCAACAACAACAAAAACAG 57.011 36.364 0.00 0.00 0.00 3.16
1412 1561 2.488952 TGTAATCAGCAGCGAACACAA 58.511 42.857 0.00 0.00 0.00 3.33
1448 1597 4.523083 AGAAAGGCAGAAACCGCAATATA 58.477 39.130 0.00 0.00 33.69 0.86
1449 1598 3.356290 AGAAAGGCAGAAACCGCAATAT 58.644 40.909 0.00 0.00 33.69 1.28
1450 1599 2.790433 AGAAAGGCAGAAACCGCAATA 58.210 42.857 0.00 0.00 33.69 1.90
1511 1660 4.070009 ACCGTTTTAGGTGAAGTGATTCC 58.930 43.478 0.00 0.00 44.07 3.01
1592 1745 3.194116 TCAGGTATTCCGGTTACACACTC 59.806 47.826 15.80 2.61 39.05 3.51
1598 1751 3.602483 TGCTTTCAGGTATTCCGGTTAC 58.398 45.455 0.00 5.02 39.05 2.50
1603 1756 1.667724 CTGCTGCTTTCAGGTATTCCG 59.332 52.381 0.00 0.00 40.65 4.30
1620 1773 1.202114 TGTGCGGATTTCATTTCCTGC 59.798 47.619 0.00 0.00 35.08 4.85
1898 2057 1.134610 GTAACACCCCTGTCCGTATGG 60.135 57.143 0.00 0.00 0.00 2.74
1901 2060 0.178938 TGGTAACACCCCTGTCCGTA 60.179 55.000 0.00 0.00 46.17 4.02
2092 2260 4.891037 GCCTCCATGCTGCTCCCC 62.891 72.222 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.