Multiple sequence alignment - TraesCS2D01G324400
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2D01G324400
chr2D
100.000
3676
0
0
1
3676
417209371
417213046
0.000000e+00
6789
1
TraesCS2D01G324400
chr2D
87.755
441
37
7
1
440
417187345
417187769
1.970000e-137
499
2
TraesCS2D01G324400
chr2D
76.516
643
125
22
1317
1945
417183827
417184457
9.840000e-86
327
3
TraesCS2D01G324400
chr2B
95.126
2585
97
19
715
3285
489028958
489031527
0.000000e+00
4048
4
TraesCS2D01G324400
chr2B
88.448
580
26
13
1
575
489028418
489028961
0.000000e+00
662
5
TraesCS2D01G324400
chr2B
96.701
394
13
0
3283
3676
489031650
489032043
0.000000e+00
656
6
TraesCS2D01G324400
chr2B
75.932
644
130
22
1315
1945
489015897
489016528
1.280000e-79
307
7
TraesCS2D01G324400
chr2A
90.789
2432
122
45
578
2948
572708580
572706190
0.000000e+00
3157
8
TraesCS2D01G324400
chr2A
88.818
1574
79
52
2120
3676
572707029
572705536
0.000000e+00
1842
9
TraesCS2D01G324400
chr2A
76.875
640
120
24
1321
1945
572748090
572747464
1.640000e-88
337
10
TraesCS2D01G324400
chr2A
81.020
353
32
17
1
344
572709144
572708818
7.880000e-62
248
11
TraesCS2D01G324400
chr1B
89.499
619
65
0
1318
1936
41526839
41526221
0.000000e+00
784
12
TraesCS2D01G324400
chr1B
88.245
638
64
7
2155
2785
41526059
41525426
0.000000e+00
752
13
TraesCS2D01G324400
chr1B
87.097
155
17
1
1060
1211
41527587
41527433
4.880000e-39
172
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2D01G324400
chr2D
417209371
417213046
3675
False
6789.000000
6789
100.000000
1
3676
1
chr2D.!!$F1
3675
1
TraesCS2D01G324400
chr2D
417183827
417187769
3942
False
413.000000
499
82.135500
1
1945
2
chr2D.!!$F2
1944
2
TraesCS2D01G324400
chr2B
489028418
489032043
3625
False
1788.666667
4048
93.425000
1
3676
3
chr2B.!!$F2
3675
3
TraesCS2D01G324400
chr2B
489015897
489016528
631
False
307.000000
307
75.932000
1315
1945
1
chr2B.!!$F1
630
4
TraesCS2D01G324400
chr2A
572705536
572709144
3608
True
1749.000000
3157
86.875667
1
3676
3
chr2A.!!$R2
3675
5
TraesCS2D01G324400
chr2A
572747464
572748090
626
True
337.000000
337
76.875000
1321
1945
1
chr2A.!!$R1
624
6
TraesCS2D01G324400
chr1B
41525426
41527587
2161
True
569.333333
784
88.280333
1060
2785
3
chr1B.!!$R1
1725
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
341
361
0.255890
ACGGCCTTCATGCAACCTAT
59.744
50.0
0.00
0.0
0.00
2.57
F
1244
1373
0.313672
TCGTTTGCCTGCAACAATCC
59.686
50.0
3.64
0.0
35.46
3.01
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1260
1390
0.537371
CTGTCAAGAAAAGGGCCGGT
60.537
55.0
1.9
0.0
0.0
5.28
R
2722
3386
0.106268
TGCCACAGAACACCAACCAT
60.106
50.0
0.0
0.0
0.0
3.55
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
56
57
1.544825
CCTGTCCTGGTCGTGGTCAT
61.545
60.000
0.00
0.00
0.00
3.06
77
86
9.847706
GGTCATGTAGTTATAGTGATATGACTG
57.152
37.037
4.95
0.00
41.55
3.51
97
106
7.596494
TGACTGATAATTTCTGCTTTTCCTTG
58.404
34.615
0.00
0.00
0.00
3.61
192
201
0.320247
GACGGCATATCAGGGCTCAG
60.320
60.000
0.00
0.00
0.00
3.35
267
287
0.802607
GTACTAGCTCAGTGGTGCGC
60.803
60.000
0.00
0.00
38.24
6.09
268
288
1.945354
TACTAGCTCAGTGGTGCGCC
61.945
60.000
10.11
10.11
38.24
6.53
269
289
4.435436
TAGCTCAGTGGTGCGCCG
62.435
66.667
12.58
0.00
34.76
6.46
341
361
0.255890
ACGGCCTTCATGCAACCTAT
59.744
50.000
0.00
0.00
0.00
2.57
365
385
8.860780
ATTCCGGTAGTAGGAGTAGTATTTAG
57.139
38.462
0.00
0.00
39.22
1.85
381
401
7.021998
AGTATTTAGTCAAGGAGAGGCTTTT
57.978
36.000
0.00
0.00
0.00
2.27
383
403
4.974645
TTAGTCAAGGAGAGGCTTTTCA
57.025
40.909
0.00
0.00
0.00
2.69
452
472
5.346822
CCAAACGAACTATGTGTAGTGTACC
59.653
44.000
0.00
0.00
40.24
3.34
498
531
2.624636
CGAAGGCTACGTAACCCATTT
58.375
47.619
11.41
0.00
0.00
2.32
500
533
2.704464
AGGCTACGTAACCCATTTCC
57.296
50.000
11.41
0.00
0.00
3.13
501
534
1.910671
AGGCTACGTAACCCATTTCCA
59.089
47.619
11.41
0.00
0.00
3.53
503
536
3.053917
AGGCTACGTAACCCATTTCCATT
60.054
43.478
11.41
0.00
0.00
3.16
518
551
3.838244
TCCATTAGGTTTCCTCGGATG
57.162
47.619
0.00
0.00
34.61
3.51
520
553
3.973973
TCCATTAGGTTTCCTCGGATGAT
59.026
43.478
0.00
0.00
34.61
2.45
523
556
1.132500
AGGTTTCCTCGGATGATCCC
58.868
55.000
5.78
0.00
31.13
3.85
553
628
2.152699
CGAGACGTGACATCGCACC
61.153
63.158
0.00
0.00
35.37
5.01
570
648
1.135603
CACCACAAACAGCATCATCCG
60.136
52.381
0.00
0.00
0.00
4.18
571
649
1.167851
CCACAAACAGCATCATCCGT
58.832
50.000
0.00
0.00
0.00
4.69
572
650
1.541147
CCACAAACAGCATCATCCGTT
59.459
47.619
0.00
0.00
0.00
4.44
573
651
2.030007
CCACAAACAGCATCATCCGTTT
60.030
45.455
0.00
0.00
31.96
3.60
574
652
3.236816
CACAAACAGCATCATCCGTTTC
58.763
45.455
0.00
0.00
29.40
2.78
575
653
3.058016
CACAAACAGCATCATCCGTTTCT
60.058
43.478
0.00
0.00
29.40
2.52
576
654
3.569701
ACAAACAGCATCATCCGTTTCTT
59.430
39.130
0.00
0.00
29.40
2.52
589
667
1.737793
CGTTTCTTTCCTTCGGGGATG
59.262
52.381
0.00
0.00
44.66
3.51
594
672
2.170607
TCTTTCCTTCGGGGATGCTAAG
59.829
50.000
0.00
1.46
44.66
2.18
595
673
1.874129
TTCCTTCGGGGATGCTAAGA
58.126
50.000
0.00
0.00
44.66
2.10
596
674
1.874129
TCCTTCGGGGATGCTAAGAA
58.126
50.000
0.00
0.00
39.58
2.52
607
685
5.501156
GGGATGCTAAGAAAGAAAGAAGGA
58.499
41.667
0.00
0.00
0.00
3.36
608
686
5.946377
GGGATGCTAAGAAAGAAAGAAGGAA
59.054
40.000
0.00
0.00
0.00
3.36
609
687
6.434340
GGGATGCTAAGAAAGAAAGAAGGAAA
59.566
38.462
0.00
0.00
0.00
3.13
610
688
7.039714
GGGATGCTAAGAAAGAAAGAAGGAAAA
60.040
37.037
0.00
0.00
0.00
2.29
611
689
8.360390
GGATGCTAAGAAAGAAAGAAGGAAAAA
58.640
33.333
0.00
0.00
0.00
1.94
646
724
9.702253
AAACTCTATACTACTCTTGATCTCCAA
57.298
33.333
0.00
0.00
0.00
3.53
653
731
3.729108
ACTCTTGATCTCCAATCCCTGA
58.271
45.455
0.00
0.00
33.68
3.86
656
734
2.575921
TGATCTCCAATCCCTGAGGT
57.424
50.000
0.00
0.00
0.00
3.85
658
736
4.007581
TGATCTCCAATCCCTGAGGTAA
57.992
45.455
0.00
0.00
0.00
2.85
662
748
1.209504
TCCAATCCCTGAGGTAAAGCG
59.790
52.381
0.00
0.00
0.00
4.68
688
774
3.330853
GGCAGATCTAACGCCGCG
61.331
66.667
12.14
12.14
35.79
6.46
718
804
2.839474
GAGTTTTGCTCACGGATTTCG
58.161
47.619
0.00
0.00
43.58
3.46
763
854
1.599606
GCACAAGAGAGAGCTCCCGA
61.600
60.000
10.93
0.00
42.30
5.14
881
992
1.298993
CCACATGCTCCTGTGCTCT
59.701
57.895
8.54
0.00
44.16
4.09
882
993
0.743701
CCACATGCTCCTGTGCTCTC
60.744
60.000
8.54
0.00
44.16
3.20
884
995
1.196766
ACATGCTCCTGTGCTCTCCA
61.197
55.000
0.00
0.00
0.00
3.86
886
997
1.908340
ATGCTCCTGTGCTCTCCACC
61.908
60.000
0.00
0.00
44.01
4.61
965
1086
3.383185
TCTTTGCTAGAGCTTAGAGGAGC
59.617
47.826
2.72
0.00
42.66
4.70
1057
1178
1.751927
GGGCTACCGGACTTCGAGA
60.752
63.158
9.46
0.00
42.43
4.04
1065
1186
1.219393
GGACTTCGAGAAGCCCCTG
59.781
63.158
12.32
0.00
41.99
4.45
1228
1357
3.072211
GGAACCCGAATCTTTCTTTCGT
58.928
45.455
5.27
0.00
43.30
3.85
1244
1373
0.313672
TCGTTTGCCTGCAACAATCC
59.686
50.000
3.64
0.00
35.46
3.01
1282
1412
0.315251
GGCCCTTTTCTTGACAGTGC
59.685
55.000
0.00
0.00
0.00
4.40
1316
1931
1.810030
GACCGGTCGATGTTGAGGC
60.810
63.158
20.85
0.00
0.00
4.70
1851
2472
2.722487
CTACCTACTGCGCTCGGG
59.278
66.667
9.73
8.32
0.00
5.14
2031
2652
3.986572
TCTTGGCGTTTTAATGTGCAATG
59.013
39.130
0.00
0.00
0.00
2.82
2531
3186
4.891037
GCCTCCATGCTGCTCCCC
62.891
72.222
0.00
0.00
0.00
4.81
2722
3386
0.178938
TGGTAACACCCCTGTCCGTA
60.179
55.000
0.00
0.00
46.17
4.02
3020
3693
1.667724
CTGCTGCTTTCAGGTATTCCG
59.332
52.381
0.00
0.00
40.65
4.30
3031
3704
3.194116
TCAGGTATTCCGGTTACACACTC
59.806
47.826
15.80
2.61
39.05
3.51
3112
3789
4.070009
ACCGTTTTAGGTGAAGTGATTCC
58.930
43.478
0.00
0.00
44.07
3.01
3174
3851
3.356290
AGAAAGGCAGAAACCGCAATAT
58.644
40.909
0.00
0.00
33.69
1.28
3211
3888
2.488952
TGTAATCAGCAGCGAACACAA
58.511
42.857
0.00
0.00
0.00
3.33
3232
4211
4.988708
ACAGCAACAACAACAAAAACAG
57.011
36.364
0.00
0.00
0.00
3.16
3244
4223
5.807011
ACAACAAAAACAGAAGAGATGCAAC
59.193
36.000
0.00
0.00
0.00
4.17
3374
4666
5.276694
ACCTGGAGGAGCTACATATATGA
57.723
43.478
19.63
2.59
38.94
2.15
3415
5891
5.880341
ACGAATTAAGCTGCAAAGGAATAC
58.120
37.500
1.02
0.00
0.00
1.89
3436
5912
3.982576
GGAAACTGAAGCCGAAAGAAA
57.017
42.857
0.00
0.00
0.00
2.52
3440
5916
3.194005
ACTGAAGCCGAAAGAAACTGA
57.806
42.857
0.00
0.00
0.00
3.41
3648
6124
2.100603
CCGCTCGGTCGTCTCTTC
59.899
66.667
0.00
0.00
0.00
2.87
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
39
40
1.118965
ACATGACCACGACCAGGACA
61.119
55.000
0.00
0.00
35.42
4.02
77
86
6.030228
CGACCAAGGAAAAGCAGAAATTATC
58.970
40.000
0.00
0.00
0.00
1.75
82
91
1.336755
GCGACCAAGGAAAAGCAGAAA
59.663
47.619
0.00
0.00
0.00
2.52
97
106
5.358298
AAAGTTCTCTGTTATTTGCGACC
57.642
39.130
0.00
0.00
0.00
4.79
233
253
7.933396
TGAGCTAGTACTTTTGTATACGCATA
58.067
34.615
0.00
0.00
37.24
3.14
235
255
6.127814
ACTGAGCTAGTACTTTTGTATACGCA
60.128
38.462
0.00
0.00
38.04
5.24
236
256
6.196724
CACTGAGCTAGTACTTTTGTATACGC
59.803
42.308
0.00
0.00
37.60
4.42
237
257
6.691818
CCACTGAGCTAGTACTTTTGTATACG
59.308
42.308
0.00
0.00
37.60
3.06
239
259
7.544622
CACCACTGAGCTAGTACTTTTGTATA
58.455
38.462
0.00
0.00
37.60
1.47
240
260
6.398918
CACCACTGAGCTAGTACTTTTGTAT
58.601
40.000
0.00
0.00
37.60
2.29
241
261
5.779922
CACCACTGAGCTAGTACTTTTGTA
58.220
41.667
0.00
0.00
37.60
2.41
242
262
4.632153
CACCACTGAGCTAGTACTTTTGT
58.368
43.478
0.00
0.00
37.60
2.83
243
263
3.433615
GCACCACTGAGCTAGTACTTTTG
59.566
47.826
0.00
0.00
37.60
2.44
244
264
3.665190
GCACCACTGAGCTAGTACTTTT
58.335
45.455
0.00
0.00
37.60
2.27
245
265
2.352814
CGCACCACTGAGCTAGTACTTT
60.353
50.000
0.00
0.00
37.60
2.66
246
266
1.202582
CGCACCACTGAGCTAGTACTT
59.797
52.381
0.00
0.00
37.60
2.24
247
267
0.811915
CGCACCACTGAGCTAGTACT
59.188
55.000
0.00
0.00
37.60
2.73
248
268
0.802607
GCGCACCACTGAGCTAGTAC
60.803
60.000
0.30
0.00
39.92
2.73
249
269
1.511305
GCGCACCACTGAGCTAGTA
59.489
57.895
0.30
0.00
39.92
1.82
250
270
2.262915
GCGCACCACTGAGCTAGT
59.737
61.111
0.30
0.00
39.92
2.57
251
271
2.510238
GGCGCACCACTGAGCTAG
60.510
66.667
10.83
0.00
42.49
3.42
272
292
8.654937
AACATTTGTTTTACCAGCCTAGTGCG
62.655
42.308
0.00
0.00
39.24
5.34
273
293
4.022329
ACATTTGTTTTACCAGCCTAGTGC
60.022
41.667
0.00
0.00
41.71
4.40
284
304
4.029704
TCACGTGCGAACATTTGTTTTAC
58.970
39.130
11.67
0.00
38.56
2.01
319
339
2.115052
TTGCATGAAGGCCGTGGT
59.885
55.556
0.00
0.00
32.41
4.16
341
361
7.806180
ACTAAATACTACTCCTACTACCGGAA
58.194
38.462
9.46
0.00
0.00
4.30
365
385
4.918810
TTTTGAAAAGCCTCTCCTTGAC
57.081
40.909
0.00
0.00
0.00
3.18
381
401
1.883926
GCCCGGAAACTAGCTTTTTGA
59.116
47.619
0.73
0.00
0.00
2.69
383
403
0.879090
CGCCCGGAAACTAGCTTTTT
59.121
50.000
0.73
0.00
0.00
1.94
452
472
1.529010
CCCGACCGTTTACGTACGTAG
60.529
57.143
25.56
17.37
39.81
3.51
490
523
5.023452
GAGGAAACCTAATGGAAATGGGTT
58.977
41.667
0.00
0.00
41.35
4.11
498
531
3.380393
TCATCCGAGGAAACCTAATGGA
58.620
45.455
0.00
0.00
35.15
3.41
500
533
4.319177
GGATCATCCGAGGAAACCTAATG
58.681
47.826
0.00
0.00
31.76
1.90
501
534
3.328050
GGGATCATCCGAGGAAACCTAAT
59.672
47.826
0.00
0.00
37.43
1.73
503
536
2.326428
GGGATCATCCGAGGAAACCTA
58.674
52.381
0.00
0.00
37.43
3.08
518
551
2.365617
TCTCGCCTTATGAGTTGGGATC
59.634
50.000
0.00
0.00
34.99
3.36
520
553
1.480954
GTCTCGCCTTATGAGTTGGGA
59.519
52.381
0.00
0.00
34.99
4.37
523
556
1.920574
CACGTCTCGCCTTATGAGTTG
59.079
52.381
0.00
0.00
34.99
3.16
550
625
1.135603
CGGATGATGCTGTTTGTGGTG
60.136
52.381
0.00
0.00
0.00
4.17
553
628
2.995466
AACGGATGATGCTGTTTGTG
57.005
45.000
0.00
0.00
33.75
3.33
589
667
8.406297
TCACTTTTTCCTTCTTTCTTTCTTAGC
58.594
33.333
0.00
0.00
0.00
3.09
594
672
9.639601
TCTTTTCACTTTTTCCTTCTTTCTTTC
57.360
29.630
0.00
0.00
0.00
2.62
595
673
9.996554
TTCTTTTCACTTTTTCCTTCTTTCTTT
57.003
25.926
0.00
0.00
0.00
2.52
596
674
9.996554
TTTCTTTTCACTTTTTCCTTCTTTCTT
57.003
25.926
0.00
0.00
0.00
2.52
628
706
5.835819
CAGGGATTGGAGATCAAGAGTAGTA
59.164
44.000
0.00
0.00
38.95
1.82
629
707
4.653341
CAGGGATTGGAGATCAAGAGTAGT
59.347
45.833
0.00
0.00
38.95
2.73
631
709
4.883759
TCAGGGATTGGAGATCAAGAGTA
58.116
43.478
0.00
0.00
38.95
2.59
633
711
3.071312
CCTCAGGGATTGGAGATCAAGAG
59.929
52.174
0.00
0.00
38.95
2.85
634
712
3.044156
CCTCAGGGATTGGAGATCAAGA
58.956
50.000
0.00
0.00
38.95
3.02
635
713
2.776536
ACCTCAGGGATTGGAGATCAAG
59.223
50.000
0.00
0.00
35.95
3.02
636
714
2.850833
ACCTCAGGGATTGGAGATCAA
58.149
47.619
0.00
0.00
36.52
2.57
637
715
2.575921
ACCTCAGGGATTGGAGATCA
57.424
50.000
0.00
0.00
36.25
2.92
638
716
4.745172
GCTTTACCTCAGGGATTGGAGATC
60.745
50.000
0.00
0.00
36.25
2.75
646
724
0.107654
GCACGCTTTACCTCAGGGAT
60.108
55.000
0.00
0.00
36.25
3.85
653
731
0.960364
CCATGTGGCACGCTTTACCT
60.960
55.000
13.77
0.00
40.97
3.08
688
774
1.468914
GAGCAAAACTCAACGGGATCC
59.531
52.381
1.92
1.92
45.49
3.36
697
783
5.433350
GCGAAATCCGTGAGCAAAACTCA
62.433
47.826
0.00
0.00
45.38
3.41
702
788
0.947960
TTGCGAAATCCGTGAGCAAA
59.052
45.000
0.00
0.00
43.61
3.68
810
909
0.545548
ACCTCGGCTTCTTCCTTCCT
60.546
55.000
0.00
0.00
0.00
3.36
811
910
1.137282
CTACCTCGGCTTCTTCCTTCC
59.863
57.143
0.00
0.00
0.00
3.46
812
911
1.137282
CCTACCTCGGCTTCTTCCTTC
59.863
57.143
0.00
0.00
0.00
3.46
813
912
1.196012
CCTACCTCGGCTTCTTCCTT
58.804
55.000
0.00
0.00
0.00
3.36
928
1045
2.416893
GCAAAGACCAAATCTCCTCGAC
59.583
50.000
0.00
0.00
36.27
4.20
930
1047
2.704572
AGCAAAGACCAAATCTCCTCG
58.295
47.619
0.00
0.00
36.27
4.63
965
1086
0.885596
CCTCTACCTCTAGGCGACGG
60.886
65.000
0.00
0.00
39.32
4.79
1228
1357
1.610363
TACGGATTGTTGCAGGCAAA
58.390
45.000
8.47
0.00
37.70
3.68
1260
1390
0.537371
CTGTCAAGAAAAGGGCCGGT
60.537
55.000
1.90
0.00
0.00
5.28
1282
1412
2.997315
TCAGTCAGAGTGGGCCGG
60.997
66.667
5.36
0.00
0.00
6.13
1632
2247
3.672295
GAGGTGCTTGCCGGAGAGG
62.672
68.421
5.05
0.00
44.97
3.69
1851
2472
2.926838
GCAGTAGCAGAAAGTGTAGAGC
59.073
50.000
0.00
0.00
41.58
4.09
2051
2672
6.049149
TGTCAGAGGTTTCTTGAAACTACTG
58.951
40.000
26.00
26.00
34.74
2.74
2053
2674
6.018669
CACTGTCAGAGGTTTCTTGAAACTAC
60.019
42.308
20.92
15.80
34.74
2.73
2056
2677
4.876107
TCACTGTCAGAGGTTTCTTGAAAC
59.124
41.667
15.53
15.53
0.00
2.78
2057
2678
4.876107
GTCACTGTCAGAGGTTTCTTGAAA
59.124
41.667
6.91
0.00
0.00
2.69
2058
2679
4.442706
GTCACTGTCAGAGGTTTCTTGAA
58.557
43.478
6.91
0.00
0.00
2.69
2059
2680
3.181465
GGTCACTGTCAGAGGTTTCTTGA
60.181
47.826
6.91
0.00
0.00
3.02
2060
2681
3.134458
GGTCACTGTCAGAGGTTTCTTG
58.866
50.000
6.91
0.00
0.00
3.02
2068
2689
3.319405
ACACTGTTAGGTCACTGTCAGAG
59.681
47.826
6.91
0.00
34.85
3.35
2367
3016
0.441921
GCAAGCAGCTTCTCTTCGAC
59.558
55.000
4.07
0.00
41.15
4.20
2531
3186
4.197750
AGATTTTGAGGTAGCAGATGCAG
58.802
43.478
7.68
0.00
45.16
4.41
2722
3386
0.106268
TGCCACAGAACACCAACCAT
60.106
50.000
0.00
0.00
0.00
3.55
2909
3582
1.271656
AGTACCGTCCTACAACAGCAC
59.728
52.381
0.00
0.00
0.00
4.40
2926
3599
1.447140
GTGGAACGCCGATGCAGTA
60.447
57.895
0.00
0.00
37.32
2.74
3020
3693
0.317479
AGCTCCACGAGTGTGTAACC
59.683
55.000
2.36
0.00
44.92
2.85
3031
3704
3.997021
ACAAGAGACAATTTAGCTCCACG
59.003
43.478
0.00
0.00
0.00
4.94
3112
3789
1.968050
ATCGCCTAACCTCCAACGGG
61.968
60.000
0.00
0.00
0.00
5.28
3174
3851
9.894783
GCTGATTACATCTCTTTTACGACTATA
57.105
33.333
0.00
0.00
0.00
1.31
3206
3883
3.377346
TTGTTGTTGTTGCTGTTGTGT
57.623
38.095
0.00
0.00
0.00
3.72
3211
3888
4.626042
TCTGTTTTTGTTGTTGTTGCTGT
58.374
34.783
0.00
0.00
0.00
4.40
3232
4211
0.807496
GTGGCTGGTTGCATCTCTTC
59.193
55.000
0.00
0.00
45.15
2.87
3244
4223
1.572085
CTGTCTTGAAGCGTGGCTGG
61.572
60.000
0.00
0.00
39.62
4.85
3289
4528
8.575649
TTGTATTCTGTAATTTCCTCCCTTTC
57.424
34.615
0.00
0.00
0.00
2.62
3351
4643
6.402981
TCATATATGTAGCTCCTCCAGGTA
57.597
41.667
12.42
0.00
33.71
3.08
3355
4647
5.543790
TGCTTTCATATATGTAGCTCCTCCA
59.456
40.000
27.17
13.95
37.40
3.86
3374
4666
1.021968
GTTTCCACCACTCGTGCTTT
58.978
50.000
0.00
0.00
41.53
3.51
3415
5891
1.508632
TCTTTCGGCTTCAGTTTCCG
58.491
50.000
0.00
0.00
44.16
4.30
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.