Multiple sequence alignment - TraesCS2D01G324300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G324300 chr2D 100.000 3559 0 0 1 3559 417182533 417186091 0.000000e+00 6573.0
1 TraesCS2D01G324300 chr2D 83.451 1414 191 22 1037 2429 417086404 417087795 0.000000e+00 1275.0
2 TraesCS2D01G324300 chr2D 89.981 529 51 2 1 528 526371788 526372315 0.000000e+00 682.0
3 TraesCS2D01G324300 chr2D 92.366 262 20 0 3084 3345 112870947 112871208 1.210000e-99 374.0
4 TraesCS2D01G324300 chr2D 92.337 261 20 0 3087 3347 644999394 644999134 4.340000e-99 372.0
5 TraesCS2D01G324300 chr2D 76.662 647 117 28 1295 1925 417210687 417211315 9.530000e-86 327.0
6 TraesCS2D01G324300 chr2D 88.312 154 15 3 3390 3542 17985099 17984948 7.850000e-42 182.0
7 TraesCS2D01G324300 chr2D 87.662 154 16 3 3390 3542 306153613 306153462 3.650000e-40 176.0
8 TraesCS2D01G324300 chr2D 100.000 44 0 0 2848 2891 417185336 417185379 8.190000e-12 82.4
9 TraesCS2D01G324300 chr2D 100.000 44 0 0 2804 2847 417185380 417185423 8.190000e-12 82.4
10 TraesCS2D01G324300 chr2D 86.792 53 7 0 2996 3048 17018453 17018401 3.840000e-05 60.2
11 TraesCS2D01G324300 chr2B 92.184 2175 113 25 595 2747 489015203 489017342 0.000000e+00 3022.0
12 TraesCS2D01G324300 chr2B 83.428 1412 184 27 1037 2429 488994776 488996156 0.000000e+00 1266.0
13 TraesCS2D01G324300 chr2B 92.164 268 21 0 3085 3352 166592115 166592382 2.590000e-101 379.0
14 TraesCS2D01G324300 chr2B 87.547 265 33 0 1 265 512596023 512596287 1.240000e-79 307.0
15 TraesCS2D01G324300 chr2B 90.714 140 12 1 2950 3088 489017345 489017484 6.070000e-43 185.0
16 TraesCS2D01G324300 chr2B 95.385 65 1 1 535 599 489015124 489015186 6.290000e-18 102.0
17 TraesCS2D01G324300 chr2B 81.513 119 17 3 2968 3082 182866753 182866636 3.780000e-15 93.5
18 TraesCS2D01G324300 chr2B 89.062 64 5 2 2686 2748 212570821 212570883 1.060000e-10 78.7
19 TraesCS2D01G324300 chr2A 89.730 1480 74 28 526 1968 572748859 572747421 0.000000e+00 1820.0
20 TraesCS2D01G324300 chr2A 94.866 857 31 5 2001 2844 572747423 572746567 0.000000e+00 1327.0
21 TraesCS2D01G324300 chr2A 83.286 1418 190 28 1037 2432 572842292 572840900 0.000000e+00 1262.0
22 TraesCS2D01G324300 chr2A 77.280 647 111 29 1296 1925 572707838 572707211 7.310000e-92 348.0
23 TraesCS2D01G324300 chr2A 92.050 239 17 1 2848 3086 572746607 572746371 5.690000e-88 335.0
24 TraesCS2D01G324300 chr2A 97.561 41 0 1 3349 3389 572746366 572746327 6.380000e-08 69.4
25 TraesCS2D01G324300 chr2A 91.304 46 4 0 2996 3041 18417791 18417836 2.970000e-06 63.9
26 TraesCS2D01G324300 chr7D 96.591 528 18 0 1 528 393952568 393952041 0.000000e+00 876.0
27 TraesCS2D01G324300 chr7D 92.857 266 16 3 3082 3347 465691392 465691654 2.000000e-102 383.0
28 TraesCS2D01G324300 chr7D 75.810 463 91 16 7 457 213363948 213363495 7.740000e-52 215.0
29 TraesCS2D01G324300 chr7D 87.662 154 16 3 3390 3542 578991495 578991344 3.650000e-40 176.0
30 TraesCS2D01G324300 chr3B 82.881 479 78 2 1 479 752271491 752271965 9.130000e-116 427.0
31 TraesCS2D01G324300 chr5A 92.857 266 17 1 3085 3348 34841903 34842168 5.570000e-103 385.0
32 TraesCS2D01G324300 chr7B 92.481 266 20 0 3084 3349 598296144 598296409 7.210000e-102 381.0
33 TraesCS2D01G324300 chr7B 87.662 154 16 3 3390 3542 716795109 716795260 3.650000e-40 176.0
34 TraesCS2D01G324300 chr7B 87.662 154 16 3 3390 3542 742938211 742938060 3.650000e-40 176.0
35 TraesCS2D01G324300 chr7B 87.013 154 18 2 3392 3544 139618891 139619043 4.720000e-39 172.0
36 TraesCS2D01G324300 chr3D 93.023 258 18 0 3084 3341 62813597 62813854 9.330000e-101 377.0
37 TraesCS2D01G324300 chr3D 92.366 262 20 0 3086 3347 91541471 91541210 1.210000e-99 374.0
38 TraesCS2D01G324300 chr3D 85.135 74 11 0 2975 3048 554126414 554126341 3.810000e-10 76.8
39 TraesCS2D01G324300 chr1B 88.889 297 32 1 224 520 480387515 480387810 7.260000e-97 364.0
40 TraesCS2D01G324300 chr1B 84.921 126 16 3 2958 3082 268604870 268604747 1.340000e-24 124.0
41 TraesCS2D01G324300 chr1B 90.625 64 4 2 2686 2748 603537905 603537843 2.280000e-12 84.2
42 TraesCS2D01G324300 chr4A 90.253 277 25 2 3077 3351 562182970 562182694 9.390000e-96 361.0
43 TraesCS2D01G324300 chr4B 86.916 214 28 0 2 215 522447124 522447337 1.280000e-59 241.0
44 TraesCS2D01G324300 chr4B 83.133 83 12 2 386 467 629859297 629859216 1.370000e-09 75.0
45 TraesCS2D01G324300 chr6D 76.538 439 80 16 7 432 82240539 82240111 5.980000e-53 219.0
46 TraesCS2D01G324300 chr6D 87.662 154 16 3 3390 3542 108461574 108461725 3.650000e-40 176.0
47 TraesCS2D01G324300 chr4D 87.821 156 16 3 3388 3542 123689693 123689540 2.820000e-41 180.0
48 TraesCS2D01G324300 chr7A 87.662 154 16 3 3390 3542 60095469 60095620 3.650000e-40 176.0
49 TraesCS2D01G324300 chr5D 90.110 91 8 1 2755 2845 517860167 517860256 2.240000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G324300 chr2D 417182533 417186091 3558 False 2245.933333 6573 100.00000 1 3559 3 chr2D.!!$F5 3558
1 TraesCS2D01G324300 chr2D 417086404 417087795 1391 False 1275.000000 1275 83.45100 1037 2429 1 chr2D.!!$F2 1392
2 TraesCS2D01G324300 chr2D 526371788 526372315 527 False 682.000000 682 89.98100 1 528 1 chr2D.!!$F4 527
3 TraesCS2D01G324300 chr2D 417210687 417211315 628 False 327.000000 327 76.66200 1295 1925 1 chr2D.!!$F3 630
4 TraesCS2D01G324300 chr2B 488994776 488996156 1380 False 1266.000000 1266 83.42800 1037 2429 1 chr2B.!!$F3 1392
5 TraesCS2D01G324300 chr2B 489015124 489017484 2360 False 1103.000000 3022 92.76100 535 3088 3 chr2B.!!$F5 2553
6 TraesCS2D01G324300 chr2A 572840900 572842292 1392 True 1262.000000 1262 83.28600 1037 2432 1 chr2A.!!$R2 1395
7 TraesCS2D01G324300 chr2A 572746327 572748859 2532 True 887.850000 1820 93.55175 526 3389 4 chr2A.!!$R3 2863
8 TraesCS2D01G324300 chr2A 572707211 572707838 627 True 348.000000 348 77.28000 1296 1925 1 chr2A.!!$R1 629
9 TraesCS2D01G324300 chr7D 393952041 393952568 527 True 876.000000 876 96.59100 1 528 1 chr7D.!!$R2 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 502 0.032952 CCGAAGAGACCGAACAACCA 59.967 55.0 0.0 0.0 0.00 3.67 F
505 506 0.034059 AGAGACCGAACAACCAGCAG 59.966 55.0 0.0 0.0 0.00 4.24 F
2453 2553 0.173481 CATCTCTCACGGCTTCGGAA 59.827 55.0 0.0 0.0 38.38 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2336 2436 1.141053 GCCATGAGGTACCCGAAGAAT 59.859 52.381 8.74 0.0 37.19 2.40 R
2495 2595 3.894759 AGAGTACGTCCCTGTTATAGCA 58.105 45.455 0.00 0.0 0.00 3.49 R
3435 3552 0.034089 CTCCCTCATTTTTCCCGCCT 60.034 55.000 0.00 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
302 303 2.033141 AGCTTGCTGTCATGGCGT 59.967 55.556 0.00 0.00 0.00 5.68
415 416 2.125912 CAAGGCCCGAGACGACAG 60.126 66.667 0.00 0.00 0.00 3.51
416 417 3.382832 AAGGCCCGAGACGACAGG 61.383 66.667 0.00 0.00 0.00 4.00
422 423 4.838486 CGAGACGACAGGCCGCTC 62.838 72.222 0.00 0.00 33.03 5.03
423 424 4.500116 GAGACGACAGGCCGCTCC 62.500 72.222 0.00 0.00 31.47 4.70
428 429 4.864334 GACAGGCCGCTCCCCATG 62.864 72.222 0.00 0.00 34.51 3.66
436 437 3.309582 GCTCCCCATGGAACGAGA 58.690 61.111 15.22 0.73 41.17 4.04
437 438 1.602237 GCTCCCCATGGAACGAGAA 59.398 57.895 15.22 0.00 41.17 2.87
438 439 0.744771 GCTCCCCATGGAACGAGAAC 60.745 60.000 15.22 0.00 41.17 3.01
439 440 0.460284 CTCCCCATGGAACGAGAACG 60.460 60.000 15.22 0.00 41.17 3.95
449 450 2.254350 CGAGAACGTCACGGAGCA 59.746 61.111 0.35 0.00 34.56 4.26
450 451 2.081212 CGAGAACGTCACGGAGCAC 61.081 63.158 0.35 0.00 34.56 4.40
475 476 3.142838 GCGCCATGGCAACCAGAT 61.143 61.111 34.93 0.00 42.06 2.90
476 477 3.113745 CGCCATGGCAACCAGATC 58.886 61.111 34.93 3.77 42.06 2.75
477 478 1.452651 CGCCATGGCAACCAGATCT 60.453 57.895 34.93 0.00 42.06 2.75
478 479 1.721664 CGCCATGGCAACCAGATCTG 61.722 60.000 34.93 16.24 42.06 2.90
479 480 0.394762 GCCATGGCAACCAGATCTGA 60.395 55.000 32.08 2.91 36.75 3.27
480 481 1.386533 CCATGGCAACCAGATCTGAC 58.613 55.000 24.62 9.98 36.75 3.51
481 482 1.012086 CATGGCAACCAGATCTGACG 58.988 55.000 24.62 10.75 36.75 4.35
482 483 0.745845 ATGGCAACCAGATCTGACGC 60.746 55.000 24.62 20.46 36.75 5.19
483 484 2.109126 GGCAACCAGATCTGACGCC 61.109 63.158 24.62 24.74 33.93 5.68
484 485 2.456119 GCAACCAGATCTGACGCCG 61.456 63.158 24.62 9.25 0.00 6.46
485 486 1.215382 CAACCAGATCTGACGCCGA 59.785 57.895 24.62 0.00 0.00 5.54
486 487 0.389817 CAACCAGATCTGACGCCGAA 60.390 55.000 24.62 0.00 0.00 4.30
487 488 0.108615 AACCAGATCTGACGCCGAAG 60.109 55.000 24.62 7.03 0.00 3.79
488 489 0.965866 ACCAGATCTGACGCCGAAGA 60.966 55.000 24.62 0.00 0.00 2.87
489 490 0.248825 CCAGATCTGACGCCGAAGAG 60.249 60.000 24.62 0.00 0.00 2.85
490 491 0.735471 CAGATCTGACGCCGAAGAGA 59.265 55.000 18.34 0.00 0.00 3.10
491 492 0.736053 AGATCTGACGCCGAAGAGAC 59.264 55.000 0.00 0.00 0.00 3.36
492 493 0.248702 GATCTGACGCCGAAGAGACC 60.249 60.000 0.00 0.00 0.00 3.85
493 494 1.994507 ATCTGACGCCGAAGAGACCG 61.995 60.000 0.00 0.00 0.00 4.79
494 495 2.670592 TGACGCCGAAGAGACCGA 60.671 61.111 0.00 0.00 0.00 4.69
495 496 2.196382 CTGACGCCGAAGAGACCGAA 62.196 60.000 0.00 0.00 0.00 4.30
496 497 1.800713 GACGCCGAAGAGACCGAAC 60.801 63.158 0.00 0.00 0.00 3.95
497 498 2.257371 CGCCGAAGAGACCGAACA 59.743 61.111 0.00 0.00 0.00 3.18
498 499 1.372499 CGCCGAAGAGACCGAACAA 60.372 57.895 0.00 0.00 0.00 2.83
499 500 1.615107 CGCCGAAGAGACCGAACAAC 61.615 60.000 0.00 0.00 0.00 3.32
500 501 1.289800 GCCGAAGAGACCGAACAACC 61.290 60.000 0.00 0.00 0.00 3.77
501 502 0.032952 CCGAAGAGACCGAACAACCA 59.967 55.000 0.00 0.00 0.00 3.67
502 503 1.419374 CGAAGAGACCGAACAACCAG 58.581 55.000 0.00 0.00 0.00 4.00
503 504 1.149148 GAAGAGACCGAACAACCAGC 58.851 55.000 0.00 0.00 0.00 4.85
504 505 0.468226 AAGAGACCGAACAACCAGCA 59.532 50.000 0.00 0.00 0.00 4.41
505 506 0.034059 AGAGACCGAACAACCAGCAG 59.966 55.000 0.00 0.00 0.00 4.24
506 507 0.951040 GAGACCGAACAACCAGCAGG 60.951 60.000 0.00 0.00 42.21 4.85
507 508 1.966451 GACCGAACAACCAGCAGGG 60.966 63.158 0.00 0.00 44.81 4.45
508 509 2.391724 GACCGAACAACCAGCAGGGA 62.392 60.000 0.00 0.00 41.15 4.20
509 510 1.228124 CCGAACAACCAGCAGGGAA 60.228 57.895 0.00 0.00 41.15 3.97
510 511 1.515521 CCGAACAACCAGCAGGGAAC 61.516 60.000 0.00 0.00 41.15 3.62
511 512 1.841663 CGAACAACCAGCAGGGAACG 61.842 60.000 0.00 0.00 41.15 3.95
512 513 0.534203 GAACAACCAGCAGGGAACGA 60.534 55.000 0.00 0.00 41.15 3.85
513 514 0.535102 AACAACCAGCAGGGAACGAG 60.535 55.000 0.00 0.00 41.15 4.18
514 515 1.672356 CAACCAGCAGGGAACGAGG 60.672 63.158 0.00 0.00 41.15 4.63
515 516 2.895424 AACCAGCAGGGAACGAGGG 61.895 63.158 0.00 0.00 41.15 4.30
516 517 4.785453 CCAGCAGGGAACGAGGGC 62.785 72.222 0.00 0.00 40.01 5.19
568 570 2.365293 GCTTCATCTCTTCTCCTCCTCC 59.635 54.545 0.00 0.00 0.00 4.30
569 571 3.914771 CTTCATCTCTTCTCCTCCTCCT 58.085 50.000 0.00 0.00 0.00 3.69
570 572 3.593442 TCATCTCTTCTCCTCCTCCTC 57.407 52.381 0.00 0.00 0.00 3.71
781 807 1.076438 CCCCCACTTTCTCCCTCTTT 58.924 55.000 0.00 0.00 0.00 2.52
784 810 1.705186 CCCACTTTCTCCCTCTTTCCA 59.295 52.381 0.00 0.00 0.00 3.53
785 811 2.310052 CCCACTTTCTCCCTCTTTCCAT 59.690 50.000 0.00 0.00 0.00 3.41
799 825 1.626356 TTCCATCCTGCTCCCTTCCG 61.626 60.000 0.00 0.00 0.00 4.30
832 858 7.202526 TCAAATTGATGGATTTCTATTTCGGC 58.797 34.615 0.00 0.00 31.60 5.54
872 898 0.394216 TGCTGGGCATATGGTGTGAC 60.394 55.000 4.56 0.00 31.71 3.67
902 928 5.467035 TTCTTGCCCGAAAGATGATTTTT 57.533 34.783 0.00 0.00 36.12 1.94
946 979 2.051334 CACAGGGTGTGTTCCTTTCA 57.949 50.000 0.00 0.00 43.08 2.69
947 980 2.374184 CACAGGGTGTGTTCCTTTCAA 58.626 47.619 0.00 0.00 43.08 2.69
948 981 2.358898 CACAGGGTGTGTTCCTTTCAAG 59.641 50.000 0.00 0.00 43.08 3.02
949 982 2.025321 ACAGGGTGTGTTCCTTTCAAGT 60.025 45.455 0.00 0.00 34.94 3.16
950 983 2.358898 CAGGGTGTGTTCCTTTCAAGTG 59.641 50.000 0.00 0.00 31.06 3.16
951 984 1.067060 GGGTGTGTTCCTTTCAAGTGC 59.933 52.381 0.00 0.00 0.00 4.40
952 985 1.748493 GGTGTGTTCCTTTCAAGTGCA 59.252 47.619 0.00 0.00 0.00 4.57
953 986 2.362077 GGTGTGTTCCTTTCAAGTGCAT 59.638 45.455 0.00 0.00 0.00 3.96
954 987 3.568007 GGTGTGTTCCTTTCAAGTGCATA 59.432 43.478 0.00 0.00 0.00 3.14
955 988 4.218417 GGTGTGTTCCTTTCAAGTGCATAT 59.782 41.667 0.00 0.00 0.00 1.78
956 989 5.414454 GGTGTGTTCCTTTCAAGTGCATATA 59.586 40.000 0.00 0.00 0.00 0.86
961 994 8.507249 GTGTTCCTTTCAAGTGCATATATATCC 58.493 37.037 0.00 0.00 0.00 2.59
966 999 6.702449 TTCAAGTGCATATATATCCCCTGT 57.298 37.500 0.00 0.00 0.00 4.00
991 1054 6.970484 TCTGAATTTTTCTGAGCTTTGTACC 58.030 36.000 0.00 0.00 33.45 3.34
995 1058 6.959639 ATTTTTCTGAGCTTTGTACCAGAA 57.040 33.333 8.72 8.72 42.00 3.02
996 1059 5.751243 TTTTCTGAGCTTTGTACCAGAAC 57.249 39.130 11.61 0.00 42.98 3.01
1030 1093 3.375699 AGAGACCCCAAGTACATACCAG 58.624 50.000 0.00 0.00 0.00 4.00
1203 1278 2.032681 AACGGCTTGGCAGGTCTC 59.967 61.111 0.00 0.00 0.00 3.36
1252 1327 6.549364 ACATGGTGTTAATTCTCTTGGTTTCA 59.451 34.615 0.00 0.00 0.00 2.69
1511 1592 1.153628 GTCCGCCTTCATGTACGCT 60.154 57.895 0.00 0.00 0.00 5.07
1635 1719 0.928229 GAAACAGCTGTTCGTCGTGT 59.072 50.000 31.20 14.76 37.25 4.49
1679 1763 3.626680 GACGTGGCTGCGCAGTCTA 62.627 63.158 38.60 25.04 33.37 2.59
1789 1873 2.347490 GTTCTCTGGGCGAGGCAA 59.653 61.111 0.00 0.00 40.30 4.52
1929 2013 7.176165 AGTTCCCAAAGGTAACAGTAATTTAGC 59.824 37.037 0.00 0.00 41.41 3.09
1934 2018 7.696453 CCAAAGGTAACAGTAATTTAGCATTCG 59.304 37.037 0.00 0.00 41.41 3.34
1941 2025 1.987704 AATTTAGCATTCGCGCGCCA 61.988 50.000 27.95 11.02 45.49 5.69
1942 2026 1.987704 ATTTAGCATTCGCGCGCCAA 61.988 50.000 27.95 21.36 45.49 4.52
2066 2166 0.320683 TGCTGTGCACGCTCAACTAT 60.321 50.000 25.96 0.00 31.71 2.12
2216 2316 1.079127 GTATGCGCTGGTGGTCACT 60.079 57.895 9.73 0.00 0.00 3.41
2453 2553 0.173481 CATCTCTCACGGCTTCGGAA 59.827 55.000 0.00 0.00 38.38 4.30
2495 2595 0.469705 TGATGTTGGGCTTGCTGGTT 60.470 50.000 0.00 0.00 0.00 3.67
2667 2774 3.876914 TCTGCATCGTGTTTCTTGTTTCT 59.123 39.130 0.00 0.00 0.00 2.52
2671 2778 4.350346 CATCGTGTTTCTTGTTTCTGCAA 58.650 39.130 0.00 0.00 0.00 4.08
2678 2791 5.642919 TGTTTCTTGTTTCTGCAAGCATTTT 59.357 32.000 0.00 0.00 43.92 1.82
2732 2847 4.949856 AGTTGCAATGGTATTACCCTCAAG 59.050 41.667 10.37 0.00 37.50 3.02
2750 2867 7.663493 ACCCTCAAGAGAAGAAAGAAAATGTAG 59.337 37.037 0.00 0.00 0.00 2.74
2756 2873 7.577107 AGAGAAGAAAGAAAATGTAGCGAAAC 58.423 34.615 0.00 0.00 0.00 2.78
2844 2961 0.697079 CCCTCTATGCATGGATGGCT 59.303 55.000 18.84 0.00 0.00 4.75
2845 2962 1.911357 CCCTCTATGCATGGATGGCTA 59.089 52.381 18.84 0.00 0.00 3.93
2846 2963 2.093075 CCCTCTATGCATGGATGGCTAG 60.093 54.545 18.84 4.86 0.00 3.42
2847 2964 2.570752 CCTCTATGCATGGATGGCTAGT 59.429 50.000 13.66 0.00 0.00 2.57
2848 2965 3.369261 CCTCTATGCATGGATGGCTAGTC 60.369 52.174 13.66 0.00 0.00 2.59
2849 2966 2.232208 TCTATGCATGGATGGCTAGTCG 59.768 50.000 8.93 0.00 0.00 4.18
2850 2967 1.051008 ATGCATGGATGGCTAGTCGA 58.949 50.000 0.00 0.00 0.00 4.20
2851 2968 0.829990 TGCATGGATGGCTAGTCGAA 59.170 50.000 0.00 0.00 0.00 3.71
2852 2969 1.221414 GCATGGATGGCTAGTCGAAC 58.779 55.000 0.00 0.00 0.00 3.95
2853 2970 1.491670 CATGGATGGCTAGTCGAACG 58.508 55.000 0.00 0.00 0.00 3.95
2854 2971 0.389391 ATGGATGGCTAGTCGAACGG 59.611 55.000 0.00 0.00 0.00 4.44
2855 2972 0.968901 TGGATGGCTAGTCGAACGGT 60.969 55.000 0.00 0.00 0.00 4.83
2856 2973 0.527817 GGATGGCTAGTCGAACGGTG 60.528 60.000 0.00 0.00 0.00 4.94
2857 2974 0.454600 GATGGCTAGTCGAACGGTGA 59.545 55.000 0.00 0.00 0.00 4.02
2858 2975 1.067212 GATGGCTAGTCGAACGGTGAT 59.933 52.381 0.00 0.00 0.00 3.06
2859 2976 1.753930 TGGCTAGTCGAACGGTGATA 58.246 50.000 0.00 0.00 0.00 2.15
2860 2977 1.674441 TGGCTAGTCGAACGGTGATAG 59.326 52.381 0.00 0.00 0.00 2.08
2861 2978 1.674962 GGCTAGTCGAACGGTGATAGT 59.325 52.381 0.00 0.00 0.00 2.12
2862 2979 2.286891 GGCTAGTCGAACGGTGATAGTC 60.287 54.545 0.00 0.00 0.00 2.59
2863 2980 2.353889 GCTAGTCGAACGGTGATAGTCA 59.646 50.000 0.00 0.00 0.00 3.41
2864 2981 3.546417 GCTAGTCGAACGGTGATAGTCAG 60.546 52.174 0.00 0.00 0.00 3.51
2865 2982 1.132643 AGTCGAACGGTGATAGTCAGC 59.867 52.381 0.00 0.00 41.16 4.26
2866 2983 1.132643 GTCGAACGGTGATAGTCAGCT 59.867 52.381 7.45 0.00 42.30 4.24
2867 2984 1.816835 TCGAACGGTGATAGTCAGCTT 59.183 47.619 7.45 0.00 42.30 3.74
2868 2985 2.230508 TCGAACGGTGATAGTCAGCTTT 59.769 45.455 7.45 4.41 42.30 3.51
2869 2986 2.599082 CGAACGGTGATAGTCAGCTTTC 59.401 50.000 14.54 14.54 44.46 2.62
2870 2987 2.674796 ACGGTGATAGTCAGCTTTCC 57.325 50.000 7.45 0.00 42.30 3.13
2871 2988 1.207329 ACGGTGATAGTCAGCTTTCCC 59.793 52.381 7.45 0.00 42.30 3.97
2872 2989 1.482593 CGGTGATAGTCAGCTTTCCCT 59.517 52.381 7.45 0.00 42.30 4.20
2873 2990 2.482142 CGGTGATAGTCAGCTTTCCCTC 60.482 54.545 7.45 0.00 42.30 4.30
2874 2991 2.769095 GGTGATAGTCAGCTTTCCCTCT 59.231 50.000 2.16 0.00 41.34 3.69
2875 2992 3.961408 GGTGATAGTCAGCTTTCCCTCTA 59.039 47.826 2.16 0.00 41.34 2.43
2876 2993 4.591072 GGTGATAGTCAGCTTTCCCTCTAT 59.409 45.833 2.16 0.00 41.34 1.98
2877 2994 5.510520 GGTGATAGTCAGCTTTCCCTCTATG 60.511 48.000 2.16 0.00 41.34 2.23
2878 2995 2.998316 AGTCAGCTTTCCCTCTATGC 57.002 50.000 0.00 0.00 0.00 3.14
2879 2996 2.191400 AGTCAGCTTTCCCTCTATGCA 58.809 47.619 0.00 0.00 0.00 3.96
2880 2997 2.776536 AGTCAGCTTTCCCTCTATGCAT 59.223 45.455 3.79 3.79 0.00 3.96
2881 2998 2.877168 GTCAGCTTTCCCTCTATGCATG 59.123 50.000 10.16 0.00 0.00 4.06
2882 2999 2.158711 TCAGCTTTCCCTCTATGCATGG 60.159 50.000 10.16 6.58 0.00 3.66
2883 3000 2.130193 AGCTTTCCCTCTATGCATGGA 58.870 47.619 12.62 12.62 0.00 3.41
2884 3001 2.715336 AGCTTTCCCTCTATGCATGGAT 59.285 45.455 13.66 4.68 0.00 3.41
2885 3002 2.818432 GCTTTCCCTCTATGCATGGATG 59.182 50.000 13.66 10.62 0.00 3.51
2886 3003 3.418995 CTTTCCCTCTATGCATGGATGG 58.581 50.000 23.03 23.03 0.00 3.51
2887 3004 0.694771 TCCCTCTATGCATGGATGGC 59.305 55.000 23.86 0.00 0.00 4.40
2888 3005 0.697079 CCCTCTATGCATGGATGGCT 59.303 55.000 18.84 0.00 0.00 4.75
2889 3006 1.911357 CCCTCTATGCATGGATGGCTA 59.089 52.381 18.84 0.00 0.00 3.93
2903 3020 2.554806 TGGCTAGACGTGTTGTATCG 57.445 50.000 0.00 0.00 0.00 2.92
2908 3025 2.363788 AGACGTGTTGTATCGTGCAT 57.636 45.000 0.00 0.00 40.39 3.96
2941 3058 4.399618 AGATTCTATCGTGTGTGTAGCAGT 59.600 41.667 0.00 0.00 0.00 4.40
3022 3139 8.976353 AACAATGAATTAGTGGCATTGGTATTA 58.024 29.630 16.67 0.00 45.24 0.98
3056 3173 8.306761 AGAAGAAAGAAAACAAAACTCACACAT 58.693 29.630 0.00 0.00 0.00 3.21
3082 3199 7.755582 ACTTTACACTGAAATTGCACTTTTC 57.244 32.000 12.35 12.35 34.40 2.29
3086 3203 6.699575 ACACTGAAATTGCACTTTTCTAGT 57.300 33.333 17.61 15.66 37.68 2.57
3088 3205 7.639945 ACACTGAAATTGCACTTTTCTAGTAC 58.360 34.615 17.61 0.00 34.56 2.73
3089 3206 7.499232 ACACTGAAATTGCACTTTTCTAGTACT 59.501 33.333 17.61 0.00 34.56 2.73
3090 3207 8.012241 CACTGAAATTGCACTTTTCTAGTACTC 58.988 37.037 17.61 0.00 34.56 2.59
3091 3208 7.173390 ACTGAAATTGCACTTTTCTAGTACTCC 59.827 37.037 17.61 0.00 34.56 3.85
3092 3209 6.430000 TGAAATTGCACTTTTCTAGTACTCCC 59.570 38.462 17.61 0.00 34.56 4.30
3093 3210 5.763876 ATTGCACTTTTCTAGTACTCCCT 57.236 39.130 0.00 0.00 34.56 4.20
3094 3211 4.803098 TGCACTTTTCTAGTACTCCCTC 57.197 45.455 0.00 0.00 34.56 4.30
3095 3212 3.514309 TGCACTTTTCTAGTACTCCCTCC 59.486 47.826 0.00 0.00 34.56 4.30
3096 3213 3.429135 GCACTTTTCTAGTACTCCCTCCG 60.429 52.174 0.00 0.00 34.56 4.63
3097 3214 3.762823 CACTTTTCTAGTACTCCCTCCGT 59.237 47.826 0.00 0.00 34.56 4.69
3098 3215 4.220163 CACTTTTCTAGTACTCCCTCCGTT 59.780 45.833 0.00 0.00 34.56 4.44
3099 3216 4.837298 ACTTTTCTAGTACTCCCTCCGTTT 59.163 41.667 0.00 0.00 34.56 3.60
3100 3217 5.047448 ACTTTTCTAGTACTCCCTCCGTTTC 60.047 44.000 0.00 0.00 34.56 2.78
3101 3218 4.313020 TTCTAGTACTCCCTCCGTTTCT 57.687 45.455 0.00 0.00 0.00 2.52
3102 3219 4.313020 TCTAGTACTCCCTCCGTTTCTT 57.687 45.455 0.00 0.00 0.00 2.52
3103 3220 4.670765 TCTAGTACTCCCTCCGTTTCTTT 58.329 43.478 0.00 0.00 0.00 2.52
3104 3221 5.082425 TCTAGTACTCCCTCCGTTTCTTTT 58.918 41.667 0.00 0.00 0.00 2.27
3105 3222 4.701651 AGTACTCCCTCCGTTTCTTTTT 57.298 40.909 0.00 0.00 0.00 1.94
3106 3223 5.813513 AGTACTCCCTCCGTTTCTTTTTA 57.186 39.130 0.00 0.00 0.00 1.52
3107 3224 5.791666 AGTACTCCCTCCGTTTCTTTTTAG 58.208 41.667 0.00 0.00 0.00 1.85
3108 3225 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
3109 3226 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
3110 3227 4.102054 ACTCCCTCCGTTTCTTTTTAGTCA 59.898 41.667 0.00 0.00 0.00 3.41
3111 3228 4.638304 TCCCTCCGTTTCTTTTTAGTCAG 58.362 43.478 0.00 0.00 0.00 3.51
3112 3229 3.188667 CCCTCCGTTTCTTTTTAGTCAGC 59.811 47.826 0.00 0.00 0.00 4.26
3113 3230 3.813166 CCTCCGTTTCTTTTTAGTCAGCA 59.187 43.478 0.00 0.00 0.00 4.41
3114 3231 4.455877 CCTCCGTTTCTTTTTAGTCAGCAT 59.544 41.667 0.00 0.00 0.00 3.79
3115 3232 5.642063 CCTCCGTTTCTTTTTAGTCAGCATA 59.358 40.000 0.00 0.00 0.00 3.14
3116 3233 6.316390 CCTCCGTTTCTTTTTAGTCAGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
3117 3234 7.494625 CCTCCGTTTCTTTTTAGTCAGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
3118 3235 8.780846 TCCGTTTCTTTTTAGTCAGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
3119 3236 8.879759 TCCGTTTCTTTTTAGTCAGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
3120 3237 8.879759 CCGTTTCTTTTTAGTCAGCATATAAGA 58.120 33.333 0.00 0.00 0.00 2.10
3131 3248 8.985315 AGTCAGCATATAAGATTTGATCCAAA 57.015 30.769 0.00 0.00 37.75 3.28
3132 3249 9.584008 AGTCAGCATATAAGATTTGATCCAAAT 57.416 29.630 4.77 4.77 45.25 2.32
3148 3265 9.883142 TTGATCCAAATCAAACTTTGTTAACTT 57.117 25.926 7.22 0.00 46.41 2.66
3149 3266 9.883142 TGATCCAAATCAAACTTTGTTAACTTT 57.117 25.926 7.22 0.00 38.97 2.66
3151 3268 9.883142 ATCCAAATCAAACTTTGTTAACTTTGA 57.117 25.926 17.83 17.83 37.12 2.69
3152 3269 9.145865 TCCAAATCAAACTTTGTTAACTTTGAC 57.854 29.630 17.86 0.00 35.89 3.18
3153 3270 9.150348 CCAAATCAAACTTTGTTAACTTTGACT 57.850 29.630 17.86 8.78 35.89 3.41
3213 3330 8.291191 TGAAATCAATATTGTTAGATGCACCA 57.709 30.769 14.97 0.00 0.00 4.17
3214 3331 8.190122 TGAAATCAATATTGTTAGATGCACCAC 58.810 33.333 14.97 0.00 0.00 4.16
3215 3332 5.733226 TCAATATTGTTAGATGCACCACG 57.267 39.130 14.97 0.00 0.00 4.94
3216 3333 5.423886 TCAATATTGTTAGATGCACCACGA 58.576 37.500 14.97 0.00 0.00 4.35
3217 3334 5.877564 TCAATATTGTTAGATGCACCACGAA 59.122 36.000 14.97 0.00 0.00 3.85
3218 3335 5.734855 ATATTGTTAGATGCACCACGAAC 57.265 39.130 0.00 0.00 0.00 3.95
3219 3336 2.831685 TGTTAGATGCACCACGAACT 57.168 45.000 0.00 0.00 0.00 3.01
3220 3337 3.120321 TGTTAGATGCACCACGAACTT 57.880 42.857 0.00 0.00 0.00 2.66
3221 3338 4.260139 TGTTAGATGCACCACGAACTTA 57.740 40.909 0.00 0.00 0.00 2.24
3222 3339 4.827692 TGTTAGATGCACCACGAACTTAT 58.172 39.130 0.00 0.00 0.00 1.73
3223 3340 5.242434 TGTTAGATGCACCACGAACTTATT 58.758 37.500 0.00 0.00 0.00 1.40
3224 3341 5.703592 TGTTAGATGCACCACGAACTTATTT 59.296 36.000 0.00 0.00 0.00 1.40
3225 3342 6.205853 TGTTAGATGCACCACGAACTTATTTT 59.794 34.615 0.00 0.00 0.00 1.82
3226 3343 5.705609 AGATGCACCACGAACTTATTTTT 57.294 34.783 0.00 0.00 0.00 1.94
3227 3344 5.699839 AGATGCACCACGAACTTATTTTTC 58.300 37.500 0.00 0.00 0.00 2.29
3228 3345 4.902443 TGCACCACGAACTTATTTTTCA 57.098 36.364 0.00 0.00 0.00 2.69
3229 3346 5.446143 TGCACCACGAACTTATTTTTCAT 57.554 34.783 0.00 0.00 0.00 2.57
3230 3347 6.561737 TGCACCACGAACTTATTTTTCATA 57.438 33.333 0.00 0.00 0.00 2.15
3231 3348 6.375377 TGCACCACGAACTTATTTTTCATAC 58.625 36.000 0.00 0.00 0.00 2.39
3232 3349 5.798434 GCACCACGAACTTATTTTTCATACC 59.202 40.000 0.00 0.00 0.00 2.73
3233 3350 6.568844 GCACCACGAACTTATTTTTCATACCA 60.569 38.462 0.00 0.00 0.00 3.25
3234 3351 7.535139 CACCACGAACTTATTTTTCATACCAT 58.465 34.615 0.00 0.00 0.00 3.55
3235 3352 8.670135 CACCACGAACTTATTTTTCATACCATA 58.330 33.333 0.00 0.00 0.00 2.74
3236 3353 9.403583 ACCACGAACTTATTTTTCATACCATAT 57.596 29.630 0.00 0.00 0.00 1.78
3250 3367 9.899661 TTTCATACCATATAGCTTTAGTGTTGT 57.100 29.630 0.00 0.00 0.00 3.32
3256 3373 8.705594 ACCATATAGCTTTAGTGTTGTAGATGT 58.294 33.333 0.00 0.00 0.00 3.06
3257 3374 9.547753 CCATATAGCTTTAGTGTTGTAGATGTT 57.452 33.333 0.00 0.00 0.00 2.71
3263 3380 9.672673 AGCTTTAGTGTTGTAGATGTTGATATT 57.327 29.630 0.00 0.00 0.00 1.28
3302 3419 9.744468 GTTGGTCAAACTTTACAAATATTGACT 57.256 29.630 20.41 0.00 40.04 3.41
3322 3439 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
3323 3440 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
3324 3441 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
3325 3442 7.989826 ACTTTGACCAAATCTTATATGCAGAC 58.010 34.615 0.00 0.00 0.00 3.51
3326 3443 7.831193 ACTTTGACCAAATCTTATATGCAGACT 59.169 33.333 0.00 0.00 0.00 3.24
3327 3444 9.330063 CTTTGACCAAATCTTATATGCAGACTA 57.670 33.333 0.00 0.00 0.00 2.59
3328 3445 9.679661 TTTGACCAAATCTTATATGCAGACTAA 57.320 29.630 0.00 0.00 0.00 2.24
3329 3446 9.679661 TTGACCAAATCTTATATGCAGACTAAA 57.320 29.630 0.00 0.00 0.00 1.85
3330 3447 9.679661 TGACCAAATCTTATATGCAGACTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
3338 3455 8.879759 TCTTATATGCAGACTAAAAAGAAACGG 58.120 33.333 0.00 0.00 0.00 4.44
3339 3456 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
3340 3457 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
3341 3458 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
3342 3459 3.188667 GCAGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
3343 3460 4.638304 CAGACTAAAAAGAAACGGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20
3344 3461 4.691216 CAGACTAAAAAGAAACGGAGGGAG 59.309 45.833 0.00 0.00 0.00 4.30
3345 3462 4.347292 AGACTAAAAAGAAACGGAGGGAGT 59.653 41.667 0.00 0.00 0.00 3.85
3346 3463 5.541484 AGACTAAAAAGAAACGGAGGGAGTA 59.459 40.000 0.00 0.00 0.00 2.59
3347 3464 6.212993 AGACTAAAAAGAAACGGAGGGAGTAT 59.787 38.462 0.00 0.00 0.00 2.12
3348 3465 7.398332 AGACTAAAAAGAAACGGAGGGAGTATA 59.602 37.037 0.00 0.00 0.00 1.47
3353 3470 8.645814 AAAAGAAACGGAGGGAGTATAAAAAT 57.354 30.769 0.00 0.00 0.00 1.82
3404 3521 9.407380 TCACATATATTAGAGGCAAAATGTTGT 57.593 29.630 0.00 0.00 37.06 3.32
3405 3522 9.669353 CACATATATTAGAGGCAAAATGTTGTC 57.331 33.333 0.00 0.00 39.81 3.18
3406 3523 8.559536 ACATATATTAGAGGCAAAATGTTGTCG 58.440 33.333 0.00 0.00 44.44 4.35
3407 3524 3.552604 TTAGAGGCAAAATGTTGTCGC 57.447 42.857 0.00 0.00 44.44 5.19
3408 3525 1.609208 AGAGGCAAAATGTTGTCGCT 58.391 45.000 0.00 0.00 43.62 4.93
3409 3526 1.956477 AGAGGCAAAATGTTGTCGCTT 59.044 42.857 0.00 0.00 45.81 4.68
3410 3527 2.053627 GAGGCAAAATGTTGTCGCTTG 58.946 47.619 0.00 0.00 44.44 4.01
3411 3528 1.680735 AGGCAAAATGTTGTCGCTTGA 59.319 42.857 0.00 0.00 44.44 3.02
3412 3529 2.100584 AGGCAAAATGTTGTCGCTTGAA 59.899 40.909 0.00 0.00 44.44 2.69
3413 3530 2.472488 GGCAAAATGTTGTCGCTTGAAG 59.528 45.455 0.00 0.00 37.06 3.02
3414 3531 3.371168 GCAAAATGTTGTCGCTTGAAGA 58.629 40.909 0.00 0.00 37.06 2.87
3415 3532 3.180387 GCAAAATGTTGTCGCTTGAAGAC 59.820 43.478 0.00 0.00 37.06 3.01
3416 3533 2.949714 AATGTTGTCGCTTGAAGACG 57.050 45.000 0.00 0.00 41.24 4.18
3417 3534 2.148916 ATGTTGTCGCTTGAAGACGA 57.851 45.000 7.44 7.44 41.24 4.20
3418 3535 1.929230 TGTTGTCGCTTGAAGACGAA 58.071 45.000 11.92 2.97 40.47 3.85
3419 3536 1.858458 TGTTGTCGCTTGAAGACGAAG 59.142 47.619 11.92 0.00 40.47 3.79
3437 3554 5.529791 ACGAAGTCGAACCAATATGATAGG 58.470 41.667 7.87 0.00 29.74 2.57
3438 3555 4.386049 CGAAGTCGAACCAATATGATAGGC 59.614 45.833 0.00 0.00 43.02 3.93
3439 3556 3.914312 AGTCGAACCAATATGATAGGCG 58.086 45.455 0.00 0.00 0.00 5.52
3440 3557 2.993899 GTCGAACCAATATGATAGGCGG 59.006 50.000 0.00 0.00 0.00 6.13
3441 3558 2.028476 TCGAACCAATATGATAGGCGGG 60.028 50.000 0.00 0.00 0.00 6.13
3442 3559 2.028476 CGAACCAATATGATAGGCGGGA 60.028 50.000 0.00 0.00 0.00 5.14
3443 3560 3.556213 CGAACCAATATGATAGGCGGGAA 60.556 47.826 0.00 0.00 0.00 3.97
3444 3561 4.394729 GAACCAATATGATAGGCGGGAAA 58.605 43.478 0.00 0.00 0.00 3.13
3445 3562 4.447138 ACCAATATGATAGGCGGGAAAA 57.553 40.909 0.00 0.00 0.00 2.29
3446 3563 4.798882 ACCAATATGATAGGCGGGAAAAA 58.201 39.130 0.00 0.00 0.00 1.94
3447 3564 5.393866 ACCAATATGATAGGCGGGAAAAAT 58.606 37.500 0.00 0.00 0.00 1.82
3448 3565 5.243730 ACCAATATGATAGGCGGGAAAAATG 59.756 40.000 0.00 0.00 0.00 2.32
3449 3566 5.476599 CCAATATGATAGGCGGGAAAAATGA 59.523 40.000 0.00 0.00 0.00 2.57
3450 3567 6.349611 CCAATATGATAGGCGGGAAAAATGAG 60.350 42.308 0.00 0.00 0.00 2.90
3451 3568 2.930950 TGATAGGCGGGAAAAATGAGG 58.069 47.619 0.00 0.00 0.00 3.86
3452 3569 2.230660 GATAGGCGGGAAAAATGAGGG 58.769 52.381 0.00 0.00 0.00 4.30
3453 3570 1.291109 TAGGCGGGAAAAATGAGGGA 58.709 50.000 0.00 0.00 0.00 4.20
3454 3571 0.034089 AGGCGGGAAAAATGAGGGAG 60.034 55.000 0.00 0.00 0.00 4.30
3455 3572 0.034477 GGCGGGAAAAATGAGGGAGA 60.034 55.000 0.00 0.00 0.00 3.71
3456 3573 1.095600 GCGGGAAAAATGAGGGAGAC 58.904 55.000 0.00 0.00 0.00 3.36
3470 3587 2.068834 GGAGACCAAGACGGGATAGA 57.931 55.000 0.00 0.00 40.22 1.98
3471 3588 1.957877 GGAGACCAAGACGGGATAGAG 59.042 57.143 0.00 0.00 40.22 2.43
3472 3589 1.957877 GAGACCAAGACGGGATAGAGG 59.042 57.143 0.00 0.00 40.22 3.69
3473 3590 1.288335 AGACCAAGACGGGATAGAGGT 59.712 52.381 0.00 0.00 40.22 3.85
3474 3591 1.409427 GACCAAGACGGGATAGAGGTG 59.591 57.143 0.00 0.00 40.22 4.00
3475 3592 0.753262 CCAAGACGGGATAGAGGTGG 59.247 60.000 0.00 0.00 0.00 4.61
3476 3593 1.688311 CCAAGACGGGATAGAGGTGGA 60.688 57.143 0.00 0.00 0.00 4.02
3477 3594 1.683917 CAAGACGGGATAGAGGTGGAG 59.316 57.143 0.00 0.00 0.00 3.86
3478 3595 0.927767 AGACGGGATAGAGGTGGAGT 59.072 55.000 0.00 0.00 0.00 3.85
3479 3596 1.033574 GACGGGATAGAGGTGGAGTG 58.966 60.000 0.00 0.00 0.00 3.51
3480 3597 0.397254 ACGGGATAGAGGTGGAGTGG 60.397 60.000 0.00 0.00 0.00 4.00
3481 3598 0.397254 CGGGATAGAGGTGGAGTGGT 60.397 60.000 0.00 0.00 0.00 4.16
3482 3599 1.123928 GGGATAGAGGTGGAGTGGTG 58.876 60.000 0.00 0.00 0.00 4.17
3483 3600 1.343075 GGGATAGAGGTGGAGTGGTGA 60.343 57.143 0.00 0.00 0.00 4.02
3484 3601 2.467880 GGATAGAGGTGGAGTGGTGAA 58.532 52.381 0.00 0.00 0.00 3.18
3485 3602 2.432510 GGATAGAGGTGGAGTGGTGAAG 59.567 54.545 0.00 0.00 0.00 3.02
3486 3603 1.938585 TAGAGGTGGAGTGGTGAAGG 58.061 55.000 0.00 0.00 0.00 3.46
3487 3604 0.838122 AGAGGTGGAGTGGTGAAGGG 60.838 60.000 0.00 0.00 0.00 3.95
3488 3605 1.842381 GAGGTGGAGTGGTGAAGGGG 61.842 65.000 0.00 0.00 0.00 4.79
3489 3606 2.757077 GTGGAGTGGTGAAGGGGG 59.243 66.667 0.00 0.00 0.00 5.40
3490 3607 3.256960 TGGAGTGGTGAAGGGGGC 61.257 66.667 0.00 0.00 0.00 5.80
3491 3608 4.048470 GGAGTGGTGAAGGGGGCC 62.048 72.222 0.00 0.00 0.00 5.80
3492 3609 2.936032 GAGTGGTGAAGGGGGCCT 60.936 66.667 0.84 0.00 33.87 5.19
3493 3610 1.615424 GAGTGGTGAAGGGGGCCTA 60.615 63.158 0.84 0.00 31.13 3.93
3494 3611 1.911702 GAGTGGTGAAGGGGGCCTAC 61.912 65.000 0.84 0.00 31.13 3.18
3495 3612 1.923909 GTGGTGAAGGGGGCCTACT 60.924 63.158 0.84 0.00 31.13 2.57
3496 3613 0.619543 GTGGTGAAGGGGGCCTACTA 60.620 60.000 0.84 0.00 31.13 1.82
3497 3614 0.345502 TGGTGAAGGGGGCCTACTAT 59.654 55.000 0.84 0.00 31.13 2.12
3498 3615 1.581640 TGGTGAAGGGGGCCTACTATA 59.418 52.381 0.84 0.00 31.13 1.31
3499 3616 1.976404 GGTGAAGGGGGCCTACTATAC 59.024 57.143 0.84 5.31 31.13 1.47
3500 3617 1.617357 GTGAAGGGGGCCTACTATACG 59.383 57.143 0.84 0.00 31.13 3.06
3501 3618 1.218704 TGAAGGGGGCCTACTATACGT 59.781 52.381 0.84 0.00 31.13 3.57
3502 3619 2.446666 TGAAGGGGGCCTACTATACGTA 59.553 50.000 0.84 0.00 31.13 3.57
3503 3620 3.076484 TGAAGGGGGCCTACTATACGTAT 59.924 47.826 13.54 13.54 31.13 3.06
3504 3621 4.292041 TGAAGGGGGCCTACTATACGTATA 59.708 45.833 14.39 14.39 31.13 1.47
3505 3622 4.242336 AGGGGGCCTACTATACGTATAC 57.758 50.000 11.27 1.77 28.47 1.47
3506 3623 3.593328 AGGGGGCCTACTATACGTATACA 59.407 47.826 11.27 2.10 28.47 2.29
3507 3624 4.231426 AGGGGGCCTACTATACGTATACAT 59.769 45.833 11.27 5.65 28.47 2.29
3508 3625 4.340381 GGGGGCCTACTATACGTATACATG 59.660 50.000 11.27 5.13 0.00 3.21
3509 3626 5.195940 GGGGCCTACTATACGTATACATGA 58.804 45.833 11.27 0.00 0.00 3.07
3510 3627 5.832060 GGGGCCTACTATACGTATACATGAT 59.168 44.000 11.27 0.00 0.00 2.45
3511 3628 6.323225 GGGGCCTACTATACGTATACATGATT 59.677 42.308 11.27 0.00 0.00 2.57
3512 3629 7.503566 GGGGCCTACTATACGTATACATGATTA 59.496 40.741 11.27 0.00 0.00 1.75
3513 3630 8.566260 GGGCCTACTATACGTATACATGATTAG 58.434 40.741 11.27 3.90 0.00 1.73
3514 3631 9.118300 GGCCTACTATACGTATACATGATTAGT 57.882 37.037 11.27 9.43 0.00 2.24
3520 3637 9.647679 CTATACGTATACATGATTAGTAAGCGG 57.352 37.037 11.27 0.00 31.61 5.52
3521 3638 6.323203 ACGTATACATGATTAGTAAGCGGT 57.677 37.500 0.00 0.00 31.61 5.68
3522 3639 6.742109 ACGTATACATGATTAGTAAGCGGTT 58.258 36.000 4.76 4.76 31.61 4.44
3523 3640 6.860023 ACGTATACATGATTAGTAAGCGGTTC 59.140 38.462 1.59 0.00 31.61 3.62
3524 3641 6.859508 CGTATACATGATTAGTAAGCGGTTCA 59.140 38.462 1.59 0.00 0.00 3.18
3525 3642 7.380333 CGTATACATGATTAGTAAGCGGTTCAA 59.620 37.037 1.59 0.00 0.00 2.69
3526 3643 7.715265 ATACATGATTAGTAAGCGGTTCAAG 57.285 36.000 1.59 0.00 0.00 3.02
3527 3644 5.730550 ACATGATTAGTAAGCGGTTCAAGA 58.269 37.500 1.59 0.00 0.00 3.02
3528 3645 5.581085 ACATGATTAGTAAGCGGTTCAAGAC 59.419 40.000 1.59 0.00 0.00 3.01
3529 3646 5.142061 TGATTAGTAAGCGGTTCAAGACA 57.858 39.130 1.59 0.00 0.00 3.41
3530 3647 5.730550 TGATTAGTAAGCGGTTCAAGACAT 58.269 37.500 1.59 0.00 0.00 3.06
3531 3648 5.810587 TGATTAGTAAGCGGTTCAAGACATC 59.189 40.000 1.59 0.51 0.00 3.06
3532 3649 2.607187 AGTAAGCGGTTCAAGACATCG 58.393 47.619 1.59 0.00 0.00 3.84
3533 3650 2.230508 AGTAAGCGGTTCAAGACATCGA 59.769 45.455 1.59 0.00 0.00 3.59
3534 3651 2.163818 AAGCGGTTCAAGACATCGAA 57.836 45.000 0.00 0.00 0.00 3.71
3535 3652 1.429463 AGCGGTTCAAGACATCGAAC 58.571 50.000 0.00 0.00 40.64 3.95
3536 3653 1.144969 GCGGTTCAAGACATCGAACA 58.855 50.000 0.00 0.00 42.67 3.18
3537 3654 1.126846 GCGGTTCAAGACATCGAACAG 59.873 52.381 0.00 0.00 42.67 3.16
3538 3655 2.672714 CGGTTCAAGACATCGAACAGA 58.327 47.619 0.00 0.00 42.67 3.41
3539 3656 3.057019 CGGTTCAAGACATCGAACAGAA 58.943 45.455 0.00 0.00 42.67 3.02
3540 3657 3.493129 CGGTTCAAGACATCGAACAGAAA 59.507 43.478 0.00 0.00 42.67 2.52
3541 3658 4.025229 CGGTTCAAGACATCGAACAGAAAA 60.025 41.667 0.00 0.00 42.67 2.29
3542 3659 5.334105 CGGTTCAAGACATCGAACAGAAAAT 60.334 40.000 0.00 0.00 42.67 1.82
3543 3660 6.080406 GGTTCAAGACATCGAACAGAAAATC 58.920 40.000 0.00 0.00 42.67 2.17
3544 3661 5.862924 TCAAGACATCGAACAGAAAATCC 57.137 39.130 0.00 0.00 0.00 3.01
3545 3662 5.551233 TCAAGACATCGAACAGAAAATCCT 58.449 37.500 0.00 0.00 0.00 3.24
3546 3663 5.409520 TCAAGACATCGAACAGAAAATCCTG 59.590 40.000 0.00 0.00 39.93 3.86
3547 3664 4.256920 AGACATCGAACAGAAAATCCTGG 58.743 43.478 0.00 0.00 38.44 4.45
3548 3665 2.749621 ACATCGAACAGAAAATCCTGGC 59.250 45.455 0.00 0.00 38.44 4.85
3549 3666 1.438651 TCGAACAGAAAATCCTGGCG 58.561 50.000 0.00 0.00 38.44 5.69
3550 3667 0.447801 CGAACAGAAAATCCTGGCGG 59.552 55.000 0.00 0.00 38.44 6.13
3551 3668 1.821216 GAACAGAAAATCCTGGCGGA 58.179 50.000 0.00 0.00 45.16 5.54
3552 3669 2.159382 GAACAGAAAATCCTGGCGGAA 58.841 47.619 0.00 0.00 44.02 4.30
3553 3670 2.514458 ACAGAAAATCCTGGCGGAAT 57.486 45.000 0.00 0.00 44.02 3.01
3554 3671 2.094675 ACAGAAAATCCTGGCGGAATG 58.905 47.619 0.00 0.00 44.02 2.67
3555 3672 1.106285 AGAAAATCCTGGCGGAATGC 58.894 50.000 0.00 0.00 44.02 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 291 1.153289 AGGATCACGCCATGACAGC 60.153 57.895 0.00 0.00 41.24 4.40
294 295 2.202919 CGCAGGATCACGCCATGA 60.203 61.111 0.00 0.00 43.13 3.07
419 420 0.744771 GTTCTCGTTCCATGGGGAGC 60.745 60.000 13.02 0.00 46.01 4.70
420 421 0.460284 CGTTCTCGTTCCATGGGGAG 60.460 60.000 13.02 15.74 46.01 4.30
421 422 1.594833 CGTTCTCGTTCCATGGGGA 59.405 57.895 13.02 6.40 43.03 4.81
422 423 4.201951 CGTTCTCGTTCCATGGGG 57.798 61.111 13.02 1.70 0.00 4.96
432 433 2.081212 GTGCTCCGTGACGTTCTCG 61.081 63.158 3.64 0.00 43.34 4.04
433 434 2.081212 CGTGCTCCGTGACGTTCTC 61.081 63.158 3.64 0.00 0.00 2.87
434 435 2.050351 CGTGCTCCGTGACGTTCT 60.050 61.111 3.64 0.00 0.00 3.01
435 436 3.103911 CCGTGCTCCGTGACGTTC 61.104 66.667 3.64 0.00 33.66 3.95
436 437 3.598715 TCCGTGCTCCGTGACGTT 61.599 61.111 3.64 0.00 33.66 3.99
437 438 4.338539 GTCCGTGCTCCGTGACGT 62.339 66.667 3.64 0.00 33.66 4.34
438 439 4.039357 AGTCCGTGCTCCGTGACG 62.039 66.667 0.00 0.00 39.90 4.35
439 440 2.430921 CAGTCCGTGCTCCGTGAC 60.431 66.667 8.66 8.66 37.16 3.67
458 459 3.129913 GATCTGGTTGCCATGGCGC 62.130 63.158 30.87 24.58 45.51 6.53
459 460 1.452651 AGATCTGGTTGCCATGGCG 60.453 57.895 30.87 16.75 45.51 5.69
460 461 0.394762 TCAGATCTGGTTGCCATGGC 60.395 55.000 30.54 30.54 42.35 4.40
461 462 1.386533 GTCAGATCTGGTTGCCATGG 58.613 55.000 22.42 7.63 30.82 3.66
462 463 1.012086 CGTCAGATCTGGTTGCCATG 58.988 55.000 22.42 3.89 30.82 3.66
463 464 0.745845 GCGTCAGATCTGGTTGCCAT 60.746 55.000 22.42 0.00 30.82 4.40
464 465 1.375908 GCGTCAGATCTGGTTGCCA 60.376 57.895 22.42 0.00 0.00 4.92
465 466 2.109126 GGCGTCAGATCTGGTTGCC 61.109 63.158 26.72 26.72 36.17 4.52
466 467 2.456119 CGGCGTCAGATCTGGTTGC 61.456 63.158 22.42 20.90 0.00 4.17
467 468 0.389817 TTCGGCGTCAGATCTGGTTG 60.390 55.000 22.42 13.09 0.00 3.77
468 469 0.108615 CTTCGGCGTCAGATCTGGTT 60.109 55.000 22.42 0.00 0.00 3.67
469 470 0.965866 TCTTCGGCGTCAGATCTGGT 60.966 55.000 22.42 0.00 0.00 4.00
470 471 0.248825 CTCTTCGGCGTCAGATCTGG 60.249 60.000 22.42 8.67 0.00 3.86
471 472 0.735471 TCTCTTCGGCGTCAGATCTG 59.265 55.000 17.07 17.07 0.00 2.90
472 473 0.736053 GTCTCTTCGGCGTCAGATCT 59.264 55.000 6.85 0.00 0.00 2.75
473 474 0.248702 GGTCTCTTCGGCGTCAGATC 60.249 60.000 6.85 3.37 0.00 2.75
474 475 1.810532 GGTCTCTTCGGCGTCAGAT 59.189 57.895 6.85 0.00 0.00 2.90
475 476 2.687805 CGGTCTCTTCGGCGTCAGA 61.688 63.158 6.85 9.06 0.00 3.27
476 477 2.196382 TTCGGTCTCTTCGGCGTCAG 62.196 60.000 6.85 4.52 0.00 3.51
477 478 2.263021 TTCGGTCTCTTCGGCGTCA 61.263 57.895 6.85 0.00 0.00 4.35
478 479 1.800713 GTTCGGTCTCTTCGGCGTC 60.801 63.158 6.85 0.00 0.00 5.19
479 480 2.079020 TTGTTCGGTCTCTTCGGCGT 62.079 55.000 6.85 0.00 0.00 5.68
480 481 1.372499 TTGTTCGGTCTCTTCGGCG 60.372 57.895 0.00 0.00 0.00 6.46
481 482 1.289800 GGTTGTTCGGTCTCTTCGGC 61.290 60.000 0.00 0.00 0.00 5.54
482 483 0.032952 TGGTTGTTCGGTCTCTTCGG 59.967 55.000 0.00 0.00 0.00 4.30
483 484 1.419374 CTGGTTGTTCGGTCTCTTCG 58.581 55.000 0.00 0.00 0.00 3.79
484 485 1.149148 GCTGGTTGTTCGGTCTCTTC 58.851 55.000 0.00 0.00 0.00 2.87
485 486 0.468226 TGCTGGTTGTTCGGTCTCTT 59.532 50.000 0.00 0.00 0.00 2.85
486 487 0.034059 CTGCTGGTTGTTCGGTCTCT 59.966 55.000 0.00 0.00 0.00 3.10
487 488 0.951040 CCTGCTGGTTGTTCGGTCTC 60.951 60.000 0.51 0.00 0.00 3.36
488 489 1.071471 CCTGCTGGTTGTTCGGTCT 59.929 57.895 0.51 0.00 0.00 3.85
489 490 1.966451 CCCTGCTGGTTGTTCGGTC 60.966 63.158 9.00 0.00 0.00 4.79
490 491 1.990160 TTCCCTGCTGGTTGTTCGGT 61.990 55.000 9.00 0.00 34.77 4.69
491 492 1.228124 TTCCCTGCTGGTTGTTCGG 60.228 57.895 9.00 0.00 34.77 4.30
492 493 1.841663 CGTTCCCTGCTGGTTGTTCG 61.842 60.000 9.00 2.81 34.77 3.95
493 494 0.534203 TCGTTCCCTGCTGGTTGTTC 60.534 55.000 9.00 0.00 34.77 3.18
494 495 0.535102 CTCGTTCCCTGCTGGTTGTT 60.535 55.000 9.00 0.00 34.77 2.83
495 496 1.071471 CTCGTTCCCTGCTGGTTGT 59.929 57.895 9.00 0.00 34.77 3.32
496 497 1.672356 CCTCGTTCCCTGCTGGTTG 60.672 63.158 9.00 0.00 34.77 3.77
497 498 2.750350 CCTCGTTCCCTGCTGGTT 59.250 61.111 9.00 0.00 34.77 3.67
498 499 3.322466 CCCTCGTTCCCTGCTGGT 61.322 66.667 9.00 0.00 34.77 4.00
499 500 4.785453 GCCCTCGTTCCCTGCTGG 62.785 72.222 1.89 1.89 0.00 4.85
517 518 1.751349 TTATAGAAGGGCCGGGTCGC 61.751 60.000 2.18 0.00 0.00 5.19
518 519 0.317479 CTTATAGAAGGGCCGGGTCG 59.683 60.000 2.18 0.00 0.00 4.79
519 520 1.343789 GACTTATAGAAGGGCCGGGTC 59.656 57.143 2.18 0.00 36.95 4.46
520 521 1.343681 TGACTTATAGAAGGGCCGGGT 60.344 52.381 2.18 0.00 36.95 5.28
521 522 1.070289 GTGACTTATAGAAGGGCCGGG 59.930 57.143 2.18 0.00 36.95 5.73
522 523 1.269621 CGTGACTTATAGAAGGGCCGG 60.270 57.143 0.00 0.00 36.95 6.13
523 524 1.407979 ACGTGACTTATAGAAGGGCCG 59.592 52.381 1.59 2.98 36.95 6.13
524 525 2.822764 CACGTGACTTATAGAAGGGCC 58.177 52.381 10.90 0.00 36.95 5.80
660 685 3.007831 GGGGCTGAGAATATGGAGAAGAG 59.992 52.174 0.00 0.00 0.00 2.85
700 725 2.590092 GGTGGGGAAGACGGGATG 59.410 66.667 0.00 0.00 0.00 3.51
701 726 2.691252 GGGTGGGGAAGACGGGAT 60.691 66.667 0.00 0.00 0.00 3.85
767 793 3.265479 CAGGATGGAAAGAGGGAGAAAGT 59.735 47.826 0.00 0.00 0.00 2.66
768 794 3.883669 CAGGATGGAAAGAGGGAGAAAG 58.116 50.000 0.00 0.00 0.00 2.62
781 807 2.066393 CGGAAGGGAGCAGGATGGA 61.066 63.158 0.00 0.00 35.86 3.41
784 810 1.306141 TGTCGGAAGGGAGCAGGAT 60.306 57.895 0.00 0.00 0.00 3.24
785 811 1.984570 CTGTCGGAAGGGAGCAGGA 60.985 63.158 0.00 0.00 0.00 3.86
799 825 5.665916 AATCCATCAATTTGAACCCTGTC 57.334 39.130 2.68 0.00 0.00 3.51
832 858 2.880890 AGCAAGCTGAACCAAACTAGTG 59.119 45.455 0.00 0.00 0.00 2.74
872 898 1.533625 TTCGGGCAAGAATTCACAGG 58.466 50.000 8.44 0.00 0.00 4.00
941 974 7.170965 ACAGGGGATATATATGCACTTGAAAG 58.829 38.462 15.76 7.58 35.45 2.62
942 975 7.090319 ACAGGGGATATATATGCACTTGAAA 57.910 36.000 15.76 0.00 35.45 2.69
943 976 6.702449 ACAGGGGATATATATGCACTTGAA 57.298 37.500 15.76 0.00 35.45 2.69
944 977 6.501805 AGAACAGGGGATATATATGCACTTGA 59.498 38.462 15.76 0.00 35.45 3.02
945 978 6.596888 CAGAACAGGGGATATATATGCACTTG 59.403 42.308 15.76 13.29 35.45 3.16
946 979 6.501805 TCAGAACAGGGGATATATATGCACTT 59.498 38.462 15.76 3.46 35.45 3.16
947 980 6.025539 TCAGAACAGGGGATATATATGCACT 58.974 40.000 12.89 12.89 38.38 4.40
948 981 6.299805 TCAGAACAGGGGATATATATGCAC 57.700 41.667 15.23 12.04 0.00 4.57
949 982 6.950860 TTCAGAACAGGGGATATATATGCA 57.049 37.500 15.23 0.00 0.00 3.96
950 983 8.814038 AAATTCAGAACAGGGGATATATATGC 57.186 34.615 5.70 5.70 0.00 3.14
954 987 9.359653 CAGAAAAATTCAGAACAGGGGATATAT 57.640 33.333 0.00 0.00 0.00 0.86
955 988 8.556589 TCAGAAAAATTCAGAACAGGGGATATA 58.443 33.333 0.00 0.00 0.00 0.86
956 989 7.413446 TCAGAAAAATTCAGAACAGGGGATAT 58.587 34.615 0.00 0.00 0.00 1.63
961 994 4.522022 AGCTCAGAAAAATTCAGAACAGGG 59.478 41.667 0.00 0.00 0.00 4.45
966 999 7.068103 TGGTACAAAGCTCAGAAAAATTCAGAA 59.932 33.333 0.00 0.00 31.92 3.02
991 1054 7.308435 GGGTCTCTATTTGACATTTTGTTCTG 58.692 38.462 0.00 0.00 36.26 3.02
995 1058 5.640147 TGGGGTCTCTATTTGACATTTTGT 58.360 37.500 0.00 0.00 36.26 2.83
996 1059 6.209391 ACTTGGGGTCTCTATTTGACATTTTG 59.791 38.462 0.00 0.00 36.26 2.44
1131 1206 4.796231 CCGTCGTCTTGAGCCCCG 62.796 72.222 0.00 0.00 0.00 5.73
1133 1208 3.876589 TTGCCGTCGTCTTGAGCCC 62.877 63.158 0.00 0.00 0.00 5.19
1134 1209 1.741770 ATTGCCGTCGTCTTGAGCC 60.742 57.895 0.00 0.00 0.00 4.70
1135 1210 1.421485 CATTGCCGTCGTCTTGAGC 59.579 57.895 0.00 0.00 0.00 4.26
1136 1211 1.421485 GCATTGCCGTCGTCTTGAG 59.579 57.895 0.00 0.00 0.00 3.02
1137 1212 2.032634 GGCATTGCCGTCGTCTTGA 61.033 57.895 12.82 0.00 39.62 3.02
1203 1278 3.874400 TGCGAACAAAAATTTGCATGG 57.126 38.095 5.82 0.00 42.79 3.66
1252 1327 2.663826 TCAAAACAAGGCGCAAAAGT 57.336 40.000 10.83 0.00 0.00 2.66
1511 1592 2.113433 GGCGACGAGGTAGAGCTCA 61.113 63.158 17.77 0.00 0.00 4.26
1603 1684 1.291877 CTGTTTCCCCGCAAGAGACG 61.292 60.000 0.00 0.00 43.02 4.18
1607 1691 1.600636 CAGCTGTTTCCCCGCAAGA 60.601 57.895 5.25 0.00 43.02 3.02
1635 1719 2.359850 GACCATGAGCGCCACCAA 60.360 61.111 2.29 0.00 0.00 3.67
1929 2013 2.700334 ATCGATTTGGCGCGCGAATG 62.700 55.000 37.18 20.37 36.28 2.67
1934 2018 2.052766 CAGATCGATTTGGCGCGC 60.053 61.111 25.94 25.94 0.00 6.86
1941 2025 3.257469 TCTTCAGCAGCAGATCGATTT 57.743 42.857 0.00 0.00 0.00 2.17
1942 2026 2.975732 TCTTCAGCAGCAGATCGATT 57.024 45.000 0.00 0.00 0.00 3.34
2336 2436 1.141053 GCCATGAGGTACCCGAAGAAT 59.859 52.381 8.74 0.00 37.19 2.40
2495 2595 3.894759 AGAGTACGTCCCTGTTATAGCA 58.105 45.455 0.00 0.00 0.00 3.49
2575 2675 6.489022 ACCCGTTCAACTAAAAGAAGCTAAAT 59.511 34.615 0.00 0.00 0.00 1.40
2591 2693 6.516739 TTGCATATCATTTAACCCGTTCAA 57.483 33.333 0.00 0.00 0.00 2.69
2623 2727 0.612229 ATATGGAGGCCTCGCTGATG 59.388 55.000 26.36 0.00 0.00 3.07
2692 2807 9.512435 CATTGCAACTAATTCATTCCTTCTTAG 57.488 33.333 0.00 0.00 0.00 2.18
2700 2815 9.463443 GGTAATACCATTGCAACTAATTCATTC 57.537 33.333 0.00 0.00 38.42 2.67
2712 2827 4.473196 TCTCTTGAGGGTAATACCATTGCA 59.527 41.667 12.03 0.00 41.02 4.08
2732 2847 7.577107 AGTTTCGCTACATTTTCTTTCTTCTC 58.423 34.615 0.00 0.00 0.00 2.87
2750 2867 4.110482 AGTCGTCCACATAATAGTTTCGC 58.890 43.478 0.00 0.00 0.00 4.70
2808 2925 1.482593 AGGGAAAGCTGACTATCACCG 59.517 52.381 0.00 0.00 0.00 4.94
2844 2961 2.353889 GCTGACTATCACCGTTCGACTA 59.646 50.000 0.00 0.00 0.00 2.59
2845 2962 1.132643 GCTGACTATCACCGTTCGACT 59.867 52.381 0.00 0.00 0.00 4.18
2846 2963 1.132643 AGCTGACTATCACCGTTCGAC 59.867 52.381 0.00 0.00 0.00 4.20
2847 2964 1.460504 AGCTGACTATCACCGTTCGA 58.539 50.000 0.00 0.00 0.00 3.71
2848 2965 2.279582 AAGCTGACTATCACCGTTCG 57.720 50.000 0.00 0.00 0.00 3.95
2849 2966 2.930682 GGAAAGCTGACTATCACCGTTC 59.069 50.000 0.00 0.00 0.00 3.95
2850 2967 2.354805 GGGAAAGCTGACTATCACCGTT 60.355 50.000 0.00 0.00 0.00 4.44
2851 2968 1.207329 GGGAAAGCTGACTATCACCGT 59.793 52.381 0.00 0.00 0.00 4.83
2852 2969 1.482593 AGGGAAAGCTGACTATCACCG 59.517 52.381 0.00 0.00 0.00 4.94
2853 2970 2.769095 AGAGGGAAAGCTGACTATCACC 59.231 50.000 0.00 0.00 0.00 4.02
2854 2971 5.537188 CATAGAGGGAAAGCTGACTATCAC 58.463 45.833 0.00 0.00 0.00 3.06
2855 2972 4.039730 GCATAGAGGGAAAGCTGACTATCA 59.960 45.833 0.00 0.00 0.00 2.15
2856 2973 4.039730 TGCATAGAGGGAAAGCTGACTATC 59.960 45.833 0.00 0.00 0.00 2.08
2857 2974 3.969976 TGCATAGAGGGAAAGCTGACTAT 59.030 43.478 0.00 0.00 0.00 2.12
2858 2975 3.374764 TGCATAGAGGGAAAGCTGACTA 58.625 45.455 0.00 0.00 0.00 2.59
2859 2976 2.191400 TGCATAGAGGGAAAGCTGACT 58.809 47.619 0.00 0.00 0.00 3.41
2860 2977 2.698855 TGCATAGAGGGAAAGCTGAC 57.301 50.000 0.00 0.00 0.00 3.51
2861 2978 2.158711 CCATGCATAGAGGGAAAGCTGA 60.159 50.000 0.00 0.00 0.00 4.26
2862 2979 2.158711 TCCATGCATAGAGGGAAAGCTG 60.159 50.000 0.00 0.00 0.00 4.24
2863 2980 2.130193 TCCATGCATAGAGGGAAAGCT 58.870 47.619 0.00 0.00 0.00 3.74
2864 2981 2.645838 TCCATGCATAGAGGGAAAGC 57.354 50.000 0.00 0.00 0.00 3.51
2865 2982 3.418995 CCATCCATGCATAGAGGGAAAG 58.581 50.000 19.36 9.19 36.00 2.62
2866 2983 2.489619 GCCATCCATGCATAGAGGGAAA 60.490 50.000 26.65 0.00 36.00 3.13
2867 2984 1.074405 GCCATCCATGCATAGAGGGAA 59.926 52.381 26.65 3.27 36.00 3.97
2868 2985 0.694771 GCCATCCATGCATAGAGGGA 59.305 55.000 26.65 16.78 36.00 4.20
2869 2986 0.697079 AGCCATCCATGCATAGAGGG 59.303 55.000 19.70 19.70 37.02 4.30
2870 2987 2.836372 TCTAGCCATCCATGCATAGAGG 59.164 50.000 0.00 0.00 0.00 3.69
2871 2988 3.675502 CGTCTAGCCATCCATGCATAGAG 60.676 52.174 0.00 0.00 29.64 2.43
2872 2989 2.232208 CGTCTAGCCATCCATGCATAGA 59.768 50.000 0.00 0.00 0.00 1.98
2873 2990 2.028658 ACGTCTAGCCATCCATGCATAG 60.029 50.000 0.00 0.00 0.00 2.23
2874 2991 1.970640 ACGTCTAGCCATCCATGCATA 59.029 47.619 0.00 0.00 0.00 3.14
2875 2992 0.761187 ACGTCTAGCCATCCATGCAT 59.239 50.000 0.00 0.00 0.00 3.96
2876 2993 0.179076 CACGTCTAGCCATCCATGCA 60.179 55.000 0.00 0.00 0.00 3.96
2877 2994 0.179073 ACACGTCTAGCCATCCATGC 60.179 55.000 0.00 0.00 0.00 4.06
2878 2995 1.935873 CAACACGTCTAGCCATCCATG 59.064 52.381 0.00 0.00 0.00 3.66
2879 2996 1.555075 ACAACACGTCTAGCCATCCAT 59.445 47.619 0.00 0.00 0.00 3.41
2880 2997 0.973632 ACAACACGTCTAGCCATCCA 59.026 50.000 0.00 0.00 0.00 3.41
2881 2998 2.953466 TACAACACGTCTAGCCATCC 57.047 50.000 0.00 0.00 0.00 3.51
2882 2999 3.043586 CGATACAACACGTCTAGCCATC 58.956 50.000 0.00 0.00 0.00 3.51
2883 3000 2.426024 ACGATACAACACGTCTAGCCAT 59.574 45.455 0.00 0.00 38.34 4.40
2884 3001 1.814394 ACGATACAACACGTCTAGCCA 59.186 47.619 0.00 0.00 38.34 4.75
2885 3002 2.182825 CACGATACAACACGTCTAGCC 58.817 52.381 0.00 0.00 40.76 3.93
2886 3003 1.582502 GCACGATACAACACGTCTAGC 59.417 52.381 0.00 0.00 40.76 3.42
2887 3004 2.858839 TGCACGATACAACACGTCTAG 58.141 47.619 0.00 0.00 40.76 2.43
2888 3005 2.993449 TGCACGATACAACACGTCTA 57.007 45.000 0.00 0.00 40.76 2.59
2889 3006 2.363788 ATGCACGATACAACACGTCT 57.636 45.000 0.00 0.00 40.76 4.18
2903 3020 6.183360 CGATAGAATCTGGACGATTTATGCAC 60.183 42.308 0.00 0.00 42.31 4.57
2908 3025 6.183360 ACACACGATAGAATCTGGACGATTTA 60.183 38.462 10.99 0.00 42.31 1.40
3050 3167 7.647318 TGCAATTTCAGTGTAAAGTTATGTGTG 59.353 33.333 0.00 0.00 0.00 3.82
3051 3168 7.647715 GTGCAATTTCAGTGTAAAGTTATGTGT 59.352 33.333 0.00 0.00 0.00 3.72
3056 3173 9.296400 GAAAAGTGCAATTTCAGTGTAAAGTTA 57.704 29.630 13.16 0.00 36.89 2.24
3082 3199 5.402997 AAAAGAAACGGAGGGAGTACTAG 57.597 43.478 0.00 0.00 0.00 2.57
3086 3203 5.305128 TGACTAAAAAGAAACGGAGGGAGTA 59.695 40.000 0.00 0.00 0.00 2.59
3088 3205 4.638304 TGACTAAAAAGAAACGGAGGGAG 58.362 43.478 0.00 0.00 0.00 4.30
3089 3206 4.638304 CTGACTAAAAAGAAACGGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20
3090 3207 3.188667 GCTGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
3091 3208 3.813166 TGCTGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
3092 3209 5.613358 ATGCTGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
3093 3210 8.780846 TTATATGCTGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
3094 3211 8.879759 TCTTATATGCTGACTAAAAAGAAACGG 58.120 33.333 0.00 0.00 0.00 4.44
3106 3223 8.985315 TTTGGATCAAATCTTATATGCTGACT 57.015 30.769 0.00 0.00 0.00 3.41
3123 3240 9.883142 AAAGTTAACAAAGTTTGATTTGGATCA 57.117 25.926 22.23 0.00 43.10 2.92
3125 3242 9.883142 TCAAAGTTAACAAAGTTTGATTTGGAT 57.117 25.926 22.23 1.07 43.36 3.41
3187 3304 8.916062 TGGTGCATCTAACAATATTGATTTCAT 58.084 29.630 22.16 4.50 0.00 2.57
3188 3305 8.190122 GTGGTGCATCTAACAATATTGATTTCA 58.810 33.333 22.16 7.26 0.00 2.69
3189 3306 7.376866 CGTGGTGCATCTAACAATATTGATTTC 59.623 37.037 22.16 5.00 0.00 2.17
3190 3307 7.066887 TCGTGGTGCATCTAACAATATTGATTT 59.933 33.333 22.16 9.25 0.00 2.17
3191 3308 6.542005 TCGTGGTGCATCTAACAATATTGATT 59.458 34.615 22.16 13.80 0.00 2.57
3192 3309 6.054941 TCGTGGTGCATCTAACAATATTGAT 58.945 36.000 22.16 12.82 0.00 2.57
3193 3310 5.423886 TCGTGGTGCATCTAACAATATTGA 58.576 37.500 22.16 0.00 0.00 2.57
3194 3311 5.733226 TCGTGGTGCATCTAACAATATTG 57.267 39.130 14.01 14.01 0.00 1.90
3195 3312 5.880332 AGTTCGTGGTGCATCTAACAATATT 59.120 36.000 0.00 0.00 0.00 1.28
3196 3313 5.428253 AGTTCGTGGTGCATCTAACAATAT 58.572 37.500 0.00 0.00 0.00 1.28
3197 3314 4.827692 AGTTCGTGGTGCATCTAACAATA 58.172 39.130 0.00 0.00 0.00 1.90
3198 3315 3.674997 AGTTCGTGGTGCATCTAACAAT 58.325 40.909 0.00 0.00 0.00 2.71
3199 3316 3.120321 AGTTCGTGGTGCATCTAACAA 57.880 42.857 0.00 0.00 0.00 2.83
3200 3317 2.831685 AGTTCGTGGTGCATCTAACA 57.168 45.000 0.00 0.00 0.00 2.41
3201 3318 5.796350 AATAAGTTCGTGGTGCATCTAAC 57.204 39.130 0.00 0.33 0.00 2.34
3202 3319 6.811253 AAAATAAGTTCGTGGTGCATCTAA 57.189 33.333 0.00 0.00 0.00 2.10
3203 3320 6.428465 TGAAAAATAAGTTCGTGGTGCATCTA 59.572 34.615 0.00 0.00 0.00 1.98
3204 3321 5.240623 TGAAAAATAAGTTCGTGGTGCATCT 59.759 36.000 0.00 0.00 0.00 2.90
3205 3322 5.457140 TGAAAAATAAGTTCGTGGTGCATC 58.543 37.500 0.00 0.00 0.00 3.91
3206 3323 5.446143 TGAAAAATAAGTTCGTGGTGCAT 57.554 34.783 0.00 0.00 0.00 3.96
3207 3324 4.902443 TGAAAAATAAGTTCGTGGTGCA 57.098 36.364 0.00 0.00 0.00 4.57
3208 3325 5.798434 GGTATGAAAAATAAGTTCGTGGTGC 59.202 40.000 0.00 0.00 0.00 5.01
3209 3326 6.904498 TGGTATGAAAAATAAGTTCGTGGTG 58.096 36.000 0.00 0.00 0.00 4.17
3210 3327 7.696992 ATGGTATGAAAAATAAGTTCGTGGT 57.303 32.000 0.00 0.00 0.00 4.16
3224 3341 9.899661 ACAACACTAAAGCTATATGGTATGAAA 57.100 29.630 0.00 0.00 0.00 2.69
3230 3347 8.705594 ACATCTACAACACTAAAGCTATATGGT 58.294 33.333 0.00 0.00 0.00 3.55
3231 3348 9.547753 AACATCTACAACACTAAAGCTATATGG 57.452 33.333 0.00 0.00 0.00 2.74
3237 3354 9.672673 AATATCAACATCTACAACACTAAAGCT 57.327 29.630 0.00 0.00 0.00 3.74
3263 3380 7.234661 AGTTTGACCAACTTTGTAGGAAAAA 57.765 32.000 0.00 0.00 43.89 1.94
3264 3381 6.844097 AGTTTGACCAACTTTGTAGGAAAA 57.156 33.333 0.00 0.00 43.89 2.29
3276 3393 9.744468 AGTCAATATTTGTAAAGTTTGACCAAC 57.256 29.630 20.15 0.00 40.68 3.77
3296 3413 8.970020 TGCATATAAGATTTGGTCAAAGTCAAT 58.030 29.630 2.55 0.00 33.32 2.57
3297 3414 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
3298 3415 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
3299 3416 8.125448 GTCTGCATATAAGATTTGGTCAAAGTC 58.875 37.037 2.55 1.51 33.32 3.01
3300 3417 7.831193 AGTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
3301 3418 8.218338 AGTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
3302 3419 9.679661 TTAGTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
3303 3420 9.679661 TTTAGTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
3304 3421 9.679661 TTTTAGTCTGCATATAAGATTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
3312 3429 8.879759 CCGTTTCTTTTTAGTCTGCATATAAGA 58.120 33.333 0.00 0.00 0.00 2.10
3313 3430 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
3314 3431 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
3315 3432 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
3316 3433 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
3317 3434 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
3318 3435 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
3319 3436 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
3320 3437 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
3321 3438 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
3322 3439 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
3323 3440 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
3324 3441 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
3325 3442 8.782339 TTTATACTCCCTCCGTTTCTTTTTAG 57.218 34.615 0.00 0.00 0.00 1.85
3326 3443 9.571816 TTTTTATACTCCCTCCGTTTCTTTTTA 57.428 29.630 0.00 0.00 0.00 1.52
3327 3444 8.467963 TTTTTATACTCCCTCCGTTTCTTTTT 57.532 30.769 0.00 0.00 0.00 1.94
3328 3445 8.645814 ATTTTTATACTCCCTCCGTTTCTTTT 57.354 30.769 0.00 0.00 0.00 2.27
3329 3446 9.743581 TTATTTTTATACTCCCTCCGTTTCTTT 57.256 29.630 0.00 0.00 0.00 2.52
3330 3447 9.916360 ATTATTTTTATACTCCCTCCGTTTCTT 57.084 29.630 0.00 0.00 0.00 2.52
3389 3506 1.609208 AGCGACAACATTTTGCCTCT 58.391 45.000 0.00 0.00 36.00 3.69
3390 3507 2.053627 CAAGCGACAACATTTTGCCTC 58.946 47.619 0.00 0.00 36.00 4.70
3391 3508 1.680735 TCAAGCGACAACATTTTGCCT 59.319 42.857 0.00 0.00 36.00 4.75
3392 3509 2.132740 TCAAGCGACAACATTTTGCC 57.867 45.000 0.00 0.00 36.00 4.52
3393 3510 3.180387 GTCTTCAAGCGACAACATTTTGC 59.820 43.478 0.00 0.00 36.00 3.68
3394 3511 3.418619 CGTCTTCAAGCGACAACATTTTG 59.581 43.478 0.00 0.00 38.83 2.44
3395 3512 3.311322 TCGTCTTCAAGCGACAACATTTT 59.689 39.130 0.52 0.00 31.76 1.82
3396 3513 2.869801 TCGTCTTCAAGCGACAACATTT 59.130 40.909 0.52 0.00 31.76 2.32
3397 3514 2.479837 TCGTCTTCAAGCGACAACATT 58.520 42.857 0.52 0.00 31.76 2.71
3398 3515 2.148916 TCGTCTTCAAGCGACAACAT 57.851 45.000 0.52 0.00 31.76 2.71
3399 3516 1.858458 CTTCGTCTTCAAGCGACAACA 59.142 47.619 3.79 0.00 36.82 3.33
3400 3517 1.859080 ACTTCGTCTTCAAGCGACAAC 59.141 47.619 3.79 0.00 36.82 3.32
3401 3518 2.124903 GACTTCGTCTTCAAGCGACAA 58.875 47.619 3.79 0.00 36.82 3.18
3402 3519 1.767289 GACTTCGTCTTCAAGCGACA 58.233 50.000 3.79 0.00 36.82 4.35
3403 3520 0.703466 CGACTTCGTCTTCAAGCGAC 59.297 55.000 3.79 0.00 36.82 5.19
3404 3521 0.589708 TCGACTTCGTCTTCAAGCGA 59.410 50.000 0.00 0.52 40.80 4.93
3405 3522 1.122680 GTTCGACTTCGTCTTCAAGCG 59.877 52.381 0.00 0.00 40.80 4.68
3406 3523 1.456165 GGTTCGACTTCGTCTTCAAGC 59.544 52.381 0.00 0.00 40.80 4.01
3407 3524 2.739292 TGGTTCGACTTCGTCTTCAAG 58.261 47.619 0.00 0.00 40.80 3.02
3408 3525 2.875087 TGGTTCGACTTCGTCTTCAA 57.125 45.000 0.00 0.00 40.80 2.69
3409 3526 2.875087 TTGGTTCGACTTCGTCTTCA 57.125 45.000 0.00 0.00 40.80 3.02
3410 3527 5.100259 TCATATTGGTTCGACTTCGTCTTC 58.900 41.667 0.00 0.00 40.80 2.87
3411 3528 5.068234 TCATATTGGTTCGACTTCGTCTT 57.932 39.130 0.00 0.00 40.80 3.01
3412 3529 4.713824 TCATATTGGTTCGACTTCGTCT 57.286 40.909 0.00 0.00 40.80 4.18
3413 3530 5.629849 CCTATCATATTGGTTCGACTTCGTC 59.370 44.000 0.00 0.00 40.80 4.20
3414 3531 5.529791 CCTATCATATTGGTTCGACTTCGT 58.470 41.667 0.00 0.00 40.80 3.85
3415 3532 4.386049 GCCTATCATATTGGTTCGACTTCG 59.614 45.833 0.00 0.00 41.45 3.79
3416 3533 4.386049 CGCCTATCATATTGGTTCGACTTC 59.614 45.833 0.00 0.00 0.00 3.01
3417 3534 4.307432 CGCCTATCATATTGGTTCGACTT 58.693 43.478 0.00 0.00 0.00 3.01
3418 3535 3.306088 CCGCCTATCATATTGGTTCGACT 60.306 47.826 0.00 0.00 0.00 4.18
3419 3536 2.993899 CCGCCTATCATATTGGTTCGAC 59.006 50.000 0.00 0.00 0.00 4.20
3420 3537 2.028476 CCCGCCTATCATATTGGTTCGA 60.028 50.000 0.00 0.00 0.00 3.71
3421 3538 2.028476 TCCCGCCTATCATATTGGTTCG 60.028 50.000 0.00 0.00 0.00 3.95
3422 3539 3.695830 TCCCGCCTATCATATTGGTTC 57.304 47.619 0.00 0.00 0.00 3.62
3423 3540 4.447138 TTTCCCGCCTATCATATTGGTT 57.553 40.909 0.00 0.00 0.00 3.67
3424 3541 4.447138 TTTTCCCGCCTATCATATTGGT 57.553 40.909 0.00 0.00 0.00 3.67
3425 3542 5.476599 TCATTTTTCCCGCCTATCATATTGG 59.523 40.000 0.00 0.00 0.00 3.16
3426 3543 6.349611 CCTCATTTTTCCCGCCTATCATATTG 60.350 42.308 0.00 0.00 0.00 1.90
3427 3544 5.711976 CCTCATTTTTCCCGCCTATCATATT 59.288 40.000 0.00 0.00 0.00 1.28
3428 3545 5.256474 CCTCATTTTTCCCGCCTATCATAT 58.744 41.667 0.00 0.00 0.00 1.78
3429 3546 4.506625 CCCTCATTTTTCCCGCCTATCATA 60.507 45.833 0.00 0.00 0.00 2.15
3430 3547 3.490348 CCTCATTTTTCCCGCCTATCAT 58.510 45.455 0.00 0.00 0.00 2.45
3431 3548 2.422803 CCCTCATTTTTCCCGCCTATCA 60.423 50.000 0.00 0.00 0.00 2.15
3432 3549 2.158667 TCCCTCATTTTTCCCGCCTATC 60.159 50.000 0.00 0.00 0.00 2.08
3433 3550 1.850345 TCCCTCATTTTTCCCGCCTAT 59.150 47.619 0.00 0.00 0.00 2.57
3434 3551 1.211949 CTCCCTCATTTTTCCCGCCTA 59.788 52.381 0.00 0.00 0.00 3.93
3435 3552 0.034089 CTCCCTCATTTTTCCCGCCT 60.034 55.000 0.00 0.00 0.00 5.52
3436 3553 0.034477 TCTCCCTCATTTTTCCCGCC 60.034 55.000 0.00 0.00 0.00 6.13
3437 3554 1.095600 GTCTCCCTCATTTTTCCCGC 58.904 55.000 0.00 0.00 0.00 6.13
3438 3555 1.004277 TGGTCTCCCTCATTTTTCCCG 59.996 52.381 0.00 0.00 0.00 5.14
3439 3556 2.899303 TGGTCTCCCTCATTTTTCCC 57.101 50.000 0.00 0.00 0.00 3.97
3440 3557 3.759086 GTCTTGGTCTCCCTCATTTTTCC 59.241 47.826 0.00 0.00 0.00 3.13
3441 3558 3.437049 CGTCTTGGTCTCCCTCATTTTTC 59.563 47.826 0.00 0.00 0.00 2.29
3442 3559 3.412386 CGTCTTGGTCTCCCTCATTTTT 58.588 45.455 0.00 0.00 0.00 1.94
3443 3560 2.290323 CCGTCTTGGTCTCCCTCATTTT 60.290 50.000 0.00 0.00 0.00 1.82
3444 3561 1.279271 CCGTCTTGGTCTCCCTCATTT 59.721 52.381 0.00 0.00 0.00 2.32
3445 3562 0.905357 CCGTCTTGGTCTCCCTCATT 59.095 55.000 0.00 0.00 0.00 2.57
3446 3563 0.978146 CCCGTCTTGGTCTCCCTCAT 60.978 60.000 0.00 0.00 35.15 2.90
3447 3564 1.609501 CCCGTCTTGGTCTCCCTCA 60.610 63.158 0.00 0.00 35.15 3.86
3448 3565 0.688087 ATCCCGTCTTGGTCTCCCTC 60.688 60.000 0.00 0.00 35.15 4.30
3449 3566 0.635009 TATCCCGTCTTGGTCTCCCT 59.365 55.000 0.00 0.00 35.15 4.20
3450 3567 1.041437 CTATCCCGTCTTGGTCTCCC 58.959 60.000 0.00 0.00 35.15 4.30
3451 3568 1.957877 CTCTATCCCGTCTTGGTCTCC 59.042 57.143 0.00 0.00 35.15 3.71
3452 3569 1.957877 CCTCTATCCCGTCTTGGTCTC 59.042 57.143 0.00 0.00 35.15 3.36
3453 3570 1.288335 ACCTCTATCCCGTCTTGGTCT 59.712 52.381 0.00 0.00 35.15 3.85
3454 3571 1.409427 CACCTCTATCCCGTCTTGGTC 59.591 57.143 0.00 0.00 35.15 4.02
3455 3572 1.486211 CACCTCTATCCCGTCTTGGT 58.514 55.000 0.00 0.00 35.15 3.67
3456 3573 0.753262 CCACCTCTATCCCGTCTTGG 59.247 60.000 0.00 0.00 37.55 3.61
3457 3574 1.683917 CTCCACCTCTATCCCGTCTTG 59.316 57.143 0.00 0.00 0.00 3.02
3458 3575 1.288335 ACTCCACCTCTATCCCGTCTT 59.712 52.381 0.00 0.00 0.00 3.01
3459 3576 0.927767 ACTCCACCTCTATCCCGTCT 59.072 55.000 0.00 0.00 0.00 4.18
3460 3577 1.033574 CACTCCACCTCTATCCCGTC 58.966 60.000 0.00 0.00 0.00 4.79
3461 3578 0.397254 CCACTCCACCTCTATCCCGT 60.397 60.000 0.00 0.00 0.00 5.28
3462 3579 0.397254 ACCACTCCACCTCTATCCCG 60.397 60.000 0.00 0.00 0.00 5.14
3463 3580 1.123928 CACCACTCCACCTCTATCCC 58.876 60.000 0.00 0.00 0.00 3.85
3464 3581 2.160721 TCACCACTCCACCTCTATCC 57.839 55.000 0.00 0.00 0.00 2.59
3465 3582 2.432510 CCTTCACCACTCCACCTCTATC 59.567 54.545 0.00 0.00 0.00 2.08
3466 3583 2.472029 CCTTCACCACTCCACCTCTAT 58.528 52.381 0.00 0.00 0.00 1.98
3467 3584 1.552486 CCCTTCACCACTCCACCTCTA 60.552 57.143 0.00 0.00 0.00 2.43
3468 3585 0.838122 CCCTTCACCACTCCACCTCT 60.838 60.000 0.00 0.00 0.00 3.69
3469 3586 1.679898 CCCTTCACCACTCCACCTC 59.320 63.158 0.00 0.00 0.00 3.85
3470 3587 1.847968 CCCCTTCACCACTCCACCT 60.848 63.158 0.00 0.00 0.00 4.00
3471 3588 2.757077 CCCCTTCACCACTCCACC 59.243 66.667 0.00 0.00 0.00 4.61
3472 3589 2.757077 CCCCCTTCACCACTCCAC 59.243 66.667 0.00 0.00 0.00 4.02
3473 3590 3.256960 GCCCCCTTCACCACTCCA 61.257 66.667 0.00 0.00 0.00 3.86
3474 3591 4.048470 GGCCCCCTTCACCACTCC 62.048 72.222 0.00 0.00 0.00 3.85
3475 3592 1.615424 TAGGCCCCCTTCACCACTC 60.615 63.158 0.00 0.00 34.61 3.51
3476 3593 1.923909 GTAGGCCCCCTTCACCACT 60.924 63.158 0.00 0.00 34.61 4.00
3477 3594 0.619543 TAGTAGGCCCCCTTCACCAC 60.620 60.000 0.00 0.00 34.61 4.16
3478 3595 0.345502 ATAGTAGGCCCCCTTCACCA 59.654 55.000 0.00 0.00 34.61 4.17
3479 3596 1.976404 GTATAGTAGGCCCCCTTCACC 59.024 57.143 0.00 0.00 34.61 4.02
3480 3597 1.617357 CGTATAGTAGGCCCCCTTCAC 59.383 57.143 0.00 0.00 34.61 3.18
3481 3598 1.218704 ACGTATAGTAGGCCCCCTTCA 59.781 52.381 0.00 0.00 34.61 3.02
3482 3599 2.006805 ACGTATAGTAGGCCCCCTTC 57.993 55.000 0.00 0.00 34.61 3.46
3483 3600 3.841249 ATACGTATAGTAGGCCCCCTT 57.159 47.619 6.21 0.00 38.94 3.95
3484 3601 3.593328 TGTATACGTATAGTAGGCCCCCT 59.407 47.826 15.52 0.00 38.94 4.79
3485 3602 3.968265 TGTATACGTATAGTAGGCCCCC 58.032 50.000 15.52 1.84 38.94 5.40
3486 3603 5.195940 TCATGTATACGTATAGTAGGCCCC 58.804 45.833 15.52 2.51 38.94 5.80
3487 3604 6.956202 ATCATGTATACGTATAGTAGGCCC 57.044 41.667 15.52 3.20 38.94 5.80
3488 3605 9.118300 ACTAATCATGTATACGTATAGTAGGCC 57.882 37.037 15.52 0.00 38.94 5.19
3494 3611 9.647679 CCGCTTACTAATCATGTATACGTATAG 57.352 37.037 15.52 5.91 0.00 1.31
3495 3612 9.166173 ACCGCTTACTAATCATGTATACGTATA 57.834 33.333 11.27 11.27 0.00 1.47
3496 3613 8.048534 ACCGCTTACTAATCATGTATACGTAT 57.951 34.615 13.54 13.54 0.00 3.06
3497 3614 7.439157 ACCGCTTACTAATCATGTATACGTA 57.561 36.000 0.00 0.00 0.00 3.57
3498 3615 6.323203 ACCGCTTACTAATCATGTATACGT 57.677 37.500 0.00 0.00 0.00 3.57
3499 3616 6.859508 TGAACCGCTTACTAATCATGTATACG 59.140 38.462 0.00 0.00 0.00 3.06
3500 3617 8.583810 TTGAACCGCTTACTAATCATGTATAC 57.416 34.615 0.00 0.00 0.00 1.47
3501 3618 8.635328 TCTTGAACCGCTTACTAATCATGTATA 58.365 33.333 0.00 0.00 0.00 1.47
3502 3619 7.438459 GTCTTGAACCGCTTACTAATCATGTAT 59.562 37.037 0.00 0.00 0.00 2.29
3503 3620 6.755141 GTCTTGAACCGCTTACTAATCATGTA 59.245 38.462 0.00 0.00 0.00 2.29
3504 3621 5.581085 GTCTTGAACCGCTTACTAATCATGT 59.419 40.000 0.00 0.00 0.00 3.21
3505 3622 5.580691 TGTCTTGAACCGCTTACTAATCATG 59.419 40.000 0.00 0.00 0.00 3.07
3506 3623 5.730550 TGTCTTGAACCGCTTACTAATCAT 58.269 37.500 0.00 0.00 0.00 2.45
3507 3624 5.142061 TGTCTTGAACCGCTTACTAATCA 57.858 39.130 0.00 0.00 0.00 2.57
3508 3625 5.051641 CGATGTCTTGAACCGCTTACTAATC 60.052 44.000 0.00 0.00 0.00 1.75
3509 3626 4.804139 CGATGTCTTGAACCGCTTACTAAT 59.196 41.667 0.00 0.00 0.00 1.73
3510 3627 4.082625 TCGATGTCTTGAACCGCTTACTAA 60.083 41.667 0.00 0.00 0.00 2.24
3511 3628 3.441222 TCGATGTCTTGAACCGCTTACTA 59.559 43.478 0.00 0.00 0.00 1.82
3512 3629 2.230508 TCGATGTCTTGAACCGCTTACT 59.769 45.455 0.00 0.00 0.00 2.24
3513 3630 2.602878 TCGATGTCTTGAACCGCTTAC 58.397 47.619 0.00 0.00 0.00 2.34
3514 3631 2.991190 GTTCGATGTCTTGAACCGCTTA 59.009 45.455 0.00 0.00 39.12 3.09
3515 3632 1.798813 GTTCGATGTCTTGAACCGCTT 59.201 47.619 0.00 0.00 39.12 4.68
3516 3633 1.270094 TGTTCGATGTCTTGAACCGCT 60.270 47.619 2.98 0.00 42.80 5.52
3517 3634 1.126846 CTGTTCGATGTCTTGAACCGC 59.873 52.381 2.98 0.00 42.80 5.68
3518 3635 2.672714 TCTGTTCGATGTCTTGAACCG 58.327 47.619 2.98 0.00 42.80 4.44
3519 3636 5.418310 TTTTCTGTTCGATGTCTTGAACC 57.582 39.130 2.98 0.00 42.80 3.62
3520 3637 6.073003 AGGATTTTCTGTTCGATGTCTTGAAC 60.073 38.462 0.00 0.00 43.47 3.18
3521 3638 5.997746 AGGATTTTCTGTTCGATGTCTTGAA 59.002 36.000 0.00 0.00 0.00 2.69
3522 3639 5.409520 CAGGATTTTCTGTTCGATGTCTTGA 59.590 40.000 0.00 0.00 0.00 3.02
3523 3640 5.391310 CCAGGATTTTCTGTTCGATGTCTTG 60.391 44.000 0.00 0.00 33.14 3.02
3524 3641 4.697352 CCAGGATTTTCTGTTCGATGTCTT 59.303 41.667 0.00 0.00 33.14 3.01
3525 3642 4.256920 CCAGGATTTTCTGTTCGATGTCT 58.743 43.478 0.00 0.00 33.14 3.41
3526 3643 3.181506 GCCAGGATTTTCTGTTCGATGTC 60.182 47.826 0.00 0.00 33.14 3.06
3527 3644 2.749621 GCCAGGATTTTCTGTTCGATGT 59.250 45.455 0.00 0.00 33.14 3.06
3528 3645 2.223112 CGCCAGGATTTTCTGTTCGATG 60.223 50.000 0.00 0.00 33.70 3.84
3529 3646 2.009774 CGCCAGGATTTTCTGTTCGAT 58.990 47.619 0.00 0.00 33.70 3.59
3530 3647 1.438651 CGCCAGGATTTTCTGTTCGA 58.561 50.000 0.00 0.00 33.70 3.71
3531 3648 0.447801 CCGCCAGGATTTTCTGTTCG 59.552 55.000 0.00 0.00 41.02 3.95
3532 3649 1.821216 TCCGCCAGGATTTTCTGTTC 58.179 50.000 0.00 0.00 42.75 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.