AutoCloner

Multiple sequence alignment - TraesCS2D01G324000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G324000	chr2D	100.000	3492	0	0	1	3492	417085434	417088925	0.000000e+00	6449.0
1	TraesCS2D01G324000	chr2D	83.451	1414	191	21	971	2362	417183569	417184961	0.000000e+00	1275.0
2	TraesCS2D01G324000	chr2D	78.109	201	40	4	1974	2172	352913413	352913215	1.320000e-24	124.0
3	TraesCS2D01G324000	chr2D	79.348	92	17	2	652	742	78012641	78012731	2.910000e-06	63.9
4	TraesCS2D01G324000	chr2B	91.849	2245	121	34	651	2874	488994459	488996662	0.000000e+00	3075.0
5	TraesCS2D01G324000	chr2B	81.741	1539	206	43	971	2483	489015653	489017142	0.000000e+00	1216.0
6	TraesCS2D01G324000	chr2B	91.463	492	38	4	1	489	488993961	488994451	0.000000e+00	673.0
7	TraesCS2D01G324000	chr2B	96.698	212	7	0	3162	3373	488999987	489000198	1.540000e-93	353.0
8	TraesCS2D01G324000	chr2B	88.462	130	6	2	3371	3492	489000247	489000375	7.810000e-32	148.0
9	TraesCS2D01G324000	chr2B	80.412	97	11	3	394	483	528159488	528159583	2.250000e-07	67.6
10	TraesCS2D01G324000	chr2A	94.513	1877	74	10	865	2718	572842397	572840527	0.000000e+00	2868.0
11	TraesCS2D01G324000	chr2A	86.887	816	78	14	77	867	572847196	572846385	0.000000e+00	887.0
12	TraesCS2D01G324000	chr2A	84.389	884	129	4	971	1846	572748354	572747472	0.000000e+00	859.0
13	TraesCS2D01G324000	chr2A	83.273	550	80	5	1945	2494	572747412	572746875	2.420000e-136	496.0
14	TraesCS2D01G324000	chr2A	83.864	440	28	18	2943	3373	572815917	572815512	2.540000e-101	379.0
15	TraesCS2D01G324000	chr2A	91.892	148	12	0	2807	2954	572840466	572840319	1.270000e-49	207.0
16	TraesCS2D01G324000	chr2A	94.118	119	6	1	3374	3492	572815461	572815344	2.770000e-41	180.0
17	TraesCS2D01G324000	chr2A	93.939	99	3	3	1	97	572847466	572847369	2.810000e-31	147.0
18	TraesCS2D01G324000	chr2A	77.778	216	44	4	1959	2172	471013223	471013010	2.830000e-26	130.0
19	TraesCS2D01G324000	chr2A	75.124	201	41	6	655	851	649566634	649566829	6.210000e-13	86.1
20	TraesCS2D01G324000	chr2A	86.667	60	7	1	62	120	733620533	733620592	8.090000e-07	65.8
21	TraesCS2D01G324000	chr5B	82.500	120	21	0	698	817	63546519	63546400	4.770000e-19	106.0
22	TraesCS2D01G324000	chr5B	97.436	39	0	1	2679	2716	310211556	310211594	8.090000e-07	65.8
23	TraesCS2D01G324000	chr6A	85.106	94	12	2	553	645	532312061	532311969	1.030000e-15	95.3
24	TraesCS2D01G324000	chr5D	93.478	46	3	0	438	483	339960954	339960999	6.250000e-08	69.4
25	TraesCS2D01G324000	chr7B	97.297	37	1	0	2679	2715	592187156	592187120	2.910000e-06	63.9
26	TraesCS2D01G324000	chr7B	94.737	38	2	0	2668	2705	634521457	634521420	3.760000e-05	60.2
27	TraesCS2D01G324000	chr4D	97.222	36	1	0	2679	2714	487652561	487652526	1.050000e-05	62.1
28	TraesCS2D01G324000	chr1B	91.111	45	4	0	438	482	632065218	632065174	1.050000e-05	62.1
29	TraesCS2D01G324000	chr6B	94.737	38	0	1	2679	2714	508812844	508812807	1.350000e-04	58.4
30	TraesCS2D01G324000	chr6D	94.444	36	2	0	447	482	407183181	407183146	4.870000e-04	56.5
31	TraesCS2D01G324000	chr1A	100.000	29	0	0	2679	2707	548792711	548792739	2.000000e-03	54.7
32	TraesCS2D01G324000	chr4B	100.000	28	0	0	2677	2704	454512988	454512961	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G324000	chr2D	417085434	417088925	3491	False	6449.00	6449	100.00000	1	3492	1	chr2D.!!$F2	3491
1	TraesCS2D01G324000	chr2D	417183569	417184961	1392	False	1275.00	1275	83.45100	971	2362	1	chr2D.!!$F3	1391
2	TraesCS2D01G324000	chr2B	489015653	489017142	1489	False	1216.00	1216	81.74100	971	2483	1	chr2B.!!$F1	1512
3	TraesCS2D01G324000	chr2B	488993961	489000375	6414	False	1062.25	3075	92.11800	1	3492	4	chr2B.!!$F3	3491
4	TraesCS2D01G324000	chr2A	572840319	572847466	7147	True	1027.25	2868	91.80775	1	2954	4	chr2A.!!$R4	2953
5	TraesCS2D01G324000	chr2A	572746875	572748354	1479	True	677.50	859	83.83100	971	2494	2	chr2A.!!$R2	1523
6	TraesCS2D01G324000	chr2A	572815344	572815917	573	True	279.50	379	88.99100	2943	3492	2	chr2A.!!$R3	549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
578	797	0.247301	GCGTCGCTGTTGCTACAATC	60.247	55.0	10.68	0.0	34.97	2.67	F
1038	5251	0.252284	TTCTCGGGAGGAAAGAGGCT	60.252	55.0	0.00	0.0	33.16	4.58	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2449	6685	0.240145	TCACAGAAGAGTACGTGCCG	59.76	55.0	0.0	0.0	0.0	5.69	R
2837	7110	0.599728	GATCTGGTGCGATGAGAGGC	60.60	60.0	0.0	0.0	0.0	4.70	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
210	406	3.057033	GGTCAATGAGCCATATGGATTGC	60.057	47.826	26.47	18.44	37.39	3.56
269	465	0.527113	TGCTCGCATTGTTCCCATTG	59.473	50.000	0.00	0.00	0.00	2.82
295	491	1.134487	GCTTCGCGTGCATGCTTTA	59.866	52.632	27.33	10.98	0.00	1.85
312	508	7.569297	CATGCTTTAGTTAACGTTTCACACTA	58.431	34.615	5.91	5.73	0.00	2.74
358	554	0.819582	CCCCATGCATCCAGTGTTTC	59.180	55.000	0.00	0.00	0.00	2.78
375	571	2.517650	TTCGTGGGCCAAACATTTTC	57.482	45.000	8.40	0.00	0.00	2.29
403	599	4.084380	GCCAGCCAATTTTCTTTTCTTTCG	60.084	41.667	0.00	0.00	0.00	3.46
445	641	8.579850	TTATAAAAGATCACCACAAGCATCTT	57.420	30.769	0.00	0.00	37.22	2.40
492	688	1.621814	TCTAAAACCACTACTGCGGCT	59.378	47.619	0.00	0.00	0.00	5.52
525	721	2.400467	GGATCTACCTAAGCCCCAGA	57.600	55.000	0.00	0.00	35.41	3.86
543	739	5.012148	CCCCAGACCAACCTTATATCTACAG	59.988	48.000	0.00	0.00	0.00	2.74
561	780	2.736721	ACAGTACTGTTGCTACAATGCG	59.263	45.455	22.95	0.00	41.83	4.73
564	783	0.790207	ACTGTTGCTACAATGCGTCG	59.210	50.000	1.93	0.00	32.92	5.12
578	797	0.247301	GCGTCGCTGTTGCTACAATC	60.247	55.000	10.68	0.00	34.97	2.67
585	804	3.482786	GCTGTTGCTACAATCAACGAAG	58.517	45.455	1.93	0.00	44.88	3.79
596	815	0.881118	TCAACGAAGGGATTGCTTGC	59.119	50.000	0.00	0.00	0.00	4.01
599	818	1.138247	CGAAGGGATTGCTTGCTGC	59.862	57.895	0.00	0.00	43.25	5.25
601	820	1.589716	GAAGGGATTGCTTGCTGCGT	61.590	55.000	0.00	0.00	46.63	5.24
623	843	2.359230	GCCATCGCCCTGATAGCC	60.359	66.667	0.00	0.00	35.91	3.93
715	935	1.664151	GAAGCCGGTTTGACCTTATCG	59.336	52.381	8.82	0.00	35.66	2.92
726	946	1.859080	GACCTTATCGATGACAACCGC	59.141	52.381	8.54	0.00	0.00	5.68
727	947	0.852777	CCTTATCGATGACAACCGCG	59.147	55.000	8.54	0.00	0.00	6.46
739	959	2.735134	GACAACCGCGAAGTCTTTATGT	59.265	45.455	8.23	0.00	0.00	2.29
746	966	2.921754	GCGAAGTCTTTATGTACGTGCT	59.078	45.455	4.97	0.00	0.00	4.40
758	979	7.997107	TTATGTACGTGCTTATAAAGACCAG	57.003	36.000	4.97	0.00	0.00	4.00
774	995	1.890979	CAGCGCCCTGAAGCCATAG	60.891	63.158	2.29	0.00	41.77	2.23
794	1015	1.459592	GTCGTCATCGTTGAACCCTTG	59.540	52.381	0.00	0.00	38.33	3.61
811	1032	5.940617	ACCCTTGCATATATCTAAAGCACA	58.059	37.500	0.00	0.00	34.56	4.57
813	1034	6.432162	ACCCTTGCATATATCTAAAGCACATG	59.568	38.462	0.00	0.00	34.56	3.21
830	1051	4.494199	GCACATGACACTAAATCTTACCGC	60.494	45.833	0.00	0.00	0.00	5.68
835	1056	5.483811	TGACACTAAATCTTACCGCATGAA	58.516	37.500	0.00	0.00	0.00	2.57
838	1059	7.041030	TGACACTAAATCTTACCGCATGAAAAA	60.041	33.333	0.00	0.00	0.00	1.94
1038	5251	0.252284	TTCTCGGGAGGAAAGAGGCT	60.252	55.000	0.00	0.00	33.16	4.58
1278	5502	4.000620	TCGGAGGGTGGGTGGCTA	62.001	66.667	0.00	0.00	0.00	3.93
1554	5778	4.767255	CTCGCGGGGAAGCAGCTT	62.767	66.667	7.60	7.60	36.85	3.74
1866	6102	0.537371	TCGCCTCAGCCTCATCGATA	60.537	55.000	0.00	0.00	34.57	2.92
1934	6170	3.314541	ACTGTACCAAACGTGAGATCC	57.685	47.619	0.00	0.00	0.00	3.36
1938	6174	2.930826	ACCAAACGTGAGATCCAAGT	57.069	45.000	0.00	0.00	39.14	3.16
2005	6241	2.152699	CACGCTCAACTACGGCTCG	61.153	63.158	0.00	0.00	0.00	5.03
2107	6343	3.554960	GCTCCAAGATCGCCATATACACA	60.555	47.826	0.00	0.00	0.00	3.72
2381	6617	2.256158	CGCCGTCCGTGAAGTGTA	59.744	61.111	0.00	0.00	0.00	2.90
2449	6685	4.030452	GCGCTTGTGGCTGTGACC	62.030	66.667	0.00	0.00	39.13	4.02
2505	6741	4.960469	CCACTTGTAAGTAGTATCCCCAGA	59.040	45.833	0.00	0.00	37.08	3.86
2526	6762	4.636206	AGAAACATAATGCTCGGTCTTTCC	59.364	41.667	0.00	0.00	0.00	3.13
2531	6767	3.425162	AATGCTCGGTCTTTCCTTTCT	57.575	42.857	0.00	0.00	0.00	2.52
2532	6768	2.930826	TGCTCGGTCTTTCCTTTCTT	57.069	45.000	0.00	0.00	0.00	2.52
2628	6885	1.804151	TGCCGCACTTTGTTCTGATAC	59.196	47.619	0.00	0.00	0.00	2.24
2642	6899	5.242171	TGTTCTGATACACGAGTGGTCTAAA	59.758	40.000	8.19	2.62	34.19	1.85
2643	6900	5.970317	TCTGATACACGAGTGGTCTAAAA	57.030	39.130	8.19	0.00	34.19	1.52
2749	7011	4.824479	TGCATGGATCTCAGTGTAAGAA	57.176	40.909	0.00	0.00	0.00	2.52
2759	7024	9.182933	GGATCTCAGTGTAAGAAACGAATATAC	57.817	37.037	0.00	0.00	0.00	1.47
2792	7057	4.677378	CCGAGACTAGATGTAGCAAATTCG	59.323	45.833	0.00	0.54	0.00	3.34
2793	7058	4.147306	CGAGACTAGATGTAGCAAATTCGC	59.853	45.833	0.00	0.00	0.00	4.70
2794	7059	5.011090	AGACTAGATGTAGCAAATTCGCA	57.989	39.130	0.00	0.00	0.00	5.10
2837	7110	8.261492	AGATGTAGCAATACTGTTTCTGAAAG	57.739	34.615	2.48	0.00	0.00	2.62
2840	7113	4.401925	AGCAATACTGTTTCTGAAAGCCT	58.598	39.130	2.48	0.00	0.00	4.58
2888	7161	7.907841	AACAGGGTATGTGTGTGTATCTATA	57.092	36.000	0.00	0.00	43.00	1.31
2904	7177	8.071368	GTGTATCTATAGACGACCTGAAAGAAG	58.929	40.741	4.10	0.00	34.07	2.85
2979	7633	0.798776	CACCGTGAGCAACAATCCTC	59.201	55.000	0.00	0.00	0.00	3.71
2998	7652	1.075542	CGCGATCCAAGCAGTAACAA	58.924	50.000	0.00	0.00	34.19	2.83
3013	7667	1.523758	AACAACATGCCTTCTCGTCC	58.476	50.000	0.00	0.00	0.00	4.79
3026	7680	1.489649	TCTCGTCCCGTATCTTCTCCT	59.510	52.381	0.00	0.00	0.00	3.69
3027	7681	1.874872	CTCGTCCCGTATCTTCTCCTC	59.125	57.143	0.00	0.00	0.00	3.71
3030	7684	0.106868	TCCCGTATCTTCTCCTCGCA	60.107	55.000	0.00	0.00	0.00	5.10
3047	7822	2.004733	CGCATGTGCTCTTCTCATTCA	58.995	47.619	3.25	0.00	39.32	2.57
3048	7823	2.030579	CGCATGTGCTCTTCTCATTCAG	59.969	50.000	3.25	0.00	39.32	3.02
3049	7824	3.008330	GCATGTGCTCTTCTCATTCAGT	58.992	45.455	0.00	0.00	38.21	3.41
3050	7825	3.063725	GCATGTGCTCTTCTCATTCAGTC	59.936	47.826	0.00	0.00	38.21	3.51
3051	7826	4.251268	CATGTGCTCTTCTCATTCAGTCA	58.749	43.478	0.00	0.00	0.00	3.41
3054	7829	6.041423	TGTGCTCTTCTCATTCAGTCATTA	57.959	37.500	0.00	0.00	0.00	1.90
3079	10245	3.441101	AGTATCCTGCTGTACCTGTGAA	58.559	45.455	0.00	0.00	0.00	3.18
3114	10282	5.539955	TGTGCATATCTCTATAGCTGGTCAA	59.460	40.000	0.00	0.00	0.00	3.18
3136	10304	0.727970	GCATTGCAGAGAGACAGCTG	59.272	55.000	13.48	13.48	35.28	4.24
3190	10500	2.290021	CTGAATCCTTGCCCCCTCCC	62.290	65.000	0.00	0.00	0.00	4.30
3256	10566	4.205587	CAAGCTCCCAGATCTTGCTTAAT	58.794	43.478	16.55	0.14	41.31	1.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
124	320	9.573133	GAAATATAATCGGGCATGGATTTTTAG	57.427	33.333	0.00	0.00	35.78	1.85
210	406	1.005347	ACAAAAACTCGCGAACTCACG	60.005	47.619	11.33	0.00	0.00	4.35
263	459	2.830772	CGAAGCATGTGTACAATGGG	57.169	50.000	15.31	1.85	0.00	4.00
295	491	4.259930	GCGTGTTAGTGTGAAACGTTAACT	60.260	41.667	0.00	6.18	42.39	2.24
327	523	4.102996	GGATGCATGGGGATTACCAAAATT	59.897	41.667	2.46	0.00	45.13	1.82
358	554	0.031449	ACGAAAATGTTTGGCCCACG	59.969	50.000	0.00	0.00	0.00	4.94
375	571	3.508744	AAGAAAATTGGCTGGCATACG	57.491	42.857	4.22	0.00	0.00	3.06
492	688	2.953284	AGATCCTAGCTACGGCACTA	57.047	50.000	0.00	0.00	41.70	2.74
525	721	8.475639	CAACAGTACTGTAGATATAAGGTTGGT	58.524	37.037	28.13	4.46	44.13	3.67
543	739	2.222508	CGACGCATTGTAGCAACAGTAC	60.223	50.000	0.00	0.00	36.83	2.73
561	780	2.721797	CGTTGATTGTAGCAACAGCGAC	60.722	50.000	8.31	0.00	44.37	5.19
564	783	3.482786	CTTCGTTGATTGTAGCAACAGC	58.517	45.455	8.31	0.00	44.37	4.40
578	797	0.883833	AGCAAGCAATCCCTTCGTTG	59.116	50.000	0.00	0.00	0.00	4.10
585	804	2.486966	GACGCAGCAAGCAATCCC	59.513	61.111	0.00	0.00	46.13	3.85
611	831	3.946201	CCCCAGGCTATCAGGGCG	61.946	72.222	2.06	0.00	41.42	6.13
642	862	1.078759	CTCGTTCTTGCCGTAGCCAG	61.079	60.000	0.00	0.00	38.69	4.85
687	907	2.479275	GTCAAACCGGCTTCAGTAAGAC	59.521	50.000	0.00	0.00	37.39	3.01
688	908	2.549349	GGTCAAACCGGCTTCAGTAAGA	60.549	50.000	0.00	0.00	34.37	2.10
715	935	1.429463	AAGACTTCGCGGTTGTCATC	58.571	50.000	21.74	6.58	33.56	2.92
726	946	6.807708	ATAAGCACGTACATAAAGACTTCG	57.192	37.500	0.00	0.00	0.00	3.79
739	959	3.441163	CGCTGGTCTTTATAAGCACGTA	58.559	45.455	0.00	0.00	35.33	3.57
746	966	1.834896	TCAGGGCGCTGGTCTTTATAA	59.165	47.619	28.30	4.97	0.00	0.98
758	979	1.889573	GACTATGGCTTCAGGGCGC	60.890	63.158	0.00	0.00	44.11	6.53
771	992	2.758979	AGGGTTCAACGATGACGACTAT	59.241	45.455	0.00	0.00	42.66	2.12
774	995	1.459592	CAAGGGTTCAACGATGACGAC	59.540	52.381	0.00	0.00	42.66	4.34
794	1015	7.664082	AGTGTCATGTGCTTTAGATATATGC	57.336	36.000	0.00	0.00	0.00	3.14
811	1032	5.670485	TCATGCGGTAAGATTTAGTGTCAT	58.330	37.500	0.00	0.00	0.00	3.06
813	1034	6.417191	TTTCATGCGGTAAGATTTAGTGTC	57.583	37.500	0.00	0.00	0.00	3.67
840	1061	7.145474	TGAAGTTCCCTTAGAGGTTAGTTTT	57.855	36.000	0.00	0.00	31.93	2.43
841	1062	6.239915	CCTGAAGTTCCCTTAGAGGTTAGTTT	60.240	42.308	0.00	0.00	31.93	2.66
842	1063	5.248705	CCTGAAGTTCCCTTAGAGGTTAGTT	59.751	44.000	0.00	0.00	31.93	2.24
843	1064	4.778427	CCTGAAGTTCCCTTAGAGGTTAGT	59.222	45.833	0.00	0.00	31.93	2.24
845	1066	5.019657	TCCTGAAGTTCCCTTAGAGGTTA	57.980	43.478	0.00	0.00	34.26	2.85
846	1067	3.870559	TCCTGAAGTTCCCTTAGAGGTT	58.129	45.455	0.00	0.00	34.26	3.50
848	1069	4.719273	AGATTCCTGAAGTTCCCTTAGAGG	59.281	45.833	0.00	0.00	34.04	3.69
850	1071	5.360144	CGTAGATTCCTGAAGTTCCCTTAGA	59.640	44.000	0.00	0.00	0.00	2.10
851	1072	5.593010	CGTAGATTCCTGAAGTTCCCTTAG	58.407	45.833	0.00	0.00	0.00	2.18
852	1073	4.142004	GCGTAGATTCCTGAAGTTCCCTTA	60.142	45.833	0.00	0.00	0.00	2.69
857	1080	2.552031	GGGCGTAGATTCCTGAAGTTC	58.448	52.381	0.00	0.00	0.00	3.01
891	5104	2.753296	TGCTTTGTTTATGCAAGTGGC	58.247	42.857	0.00	0.00	45.13	5.01
1651	5875	2.649034	GCTGAGGACGACGACCAA	59.351	61.111	18.31	5.48	0.00	3.67
1653	5877	3.735029	ACGCTGAGGACGACGACC	61.735	66.667	8.37	8.37	0.00	4.79
1764	5988	1.630148	CGCAGTAGCAGAAGGTGTAC	58.370	55.000	0.00	0.00	42.27	2.90
1866	6102	2.302445	ACTCTTCACTCTTCAGCAGCAT	59.698	45.455	0.00	0.00	0.00	3.79
2005	6241	3.792736	TACCCCAGCACGGCCATC	61.793	66.667	2.24	0.00	0.00	3.51
2165	6401	1.673920	GACACAGATCCTCTCCTCGAC	59.326	57.143	0.00	0.00	0.00	4.20
2449	6685	0.240145	TCACAGAAGAGTACGTGCCG	59.760	55.000	0.00	0.00	0.00	5.69
2505	6741	4.589908	AGGAAAGACCGAGCATTATGTTT	58.410	39.130	0.00	0.00	44.74	2.83
2628	6885	9.672086	TTTGAAATAAATTTTAGACCACTCGTG	57.328	29.630	0.00	0.00	0.00	4.35
2660	6917	2.039084	AGACCTAGCCACACCTTTTGAG	59.961	50.000	0.00	0.00	0.00	3.02
2662	6919	2.568623	AGACCTAGCCACACCTTTTG	57.431	50.000	0.00	0.00	0.00	2.44
2724	6981	6.003326	TCTTACACTGAGATCCATGCAAAAA	58.997	36.000	0.00	0.00	0.00	1.94
2725	6982	5.559770	TCTTACACTGAGATCCATGCAAAA	58.440	37.500	0.00	0.00	0.00	2.44
2726	6983	5.164620	TCTTACACTGAGATCCATGCAAA	57.835	39.130	0.00	0.00	0.00	3.68
2741	7003	9.941664	TGCTACTAGTATATTCGTTTCTTACAC	57.058	33.333	2.33	0.00	0.00	2.90
2749	7011	6.484643	TCTCGGTTGCTACTAGTATATTCGTT	59.515	38.462	2.33	0.00	0.00	3.85
2759	7024	4.817464	ACATCTAGTCTCGGTTGCTACTAG	59.183	45.833	0.00	0.00	41.73	2.57
2765	7030	2.099263	TGCTACATCTAGTCTCGGTTGC	59.901	50.000	0.00	0.00	0.00	4.17
2806	7071	8.754080	AGAAACAGTATTGCTACATCTAGTCTT	58.246	33.333	0.00	0.00	0.00	3.01
2823	7088	4.955811	TGAGAGGCTTTCAGAAACAGTA	57.044	40.909	3.21	0.00	0.00	2.74
2837	7110	0.599728	GATCTGGTGCGATGAGAGGC	60.600	60.000	0.00	0.00	0.00	4.70
2840	7113	1.066422	GCGATCTGGTGCGATGAGA	59.934	57.895	0.00	0.00	0.00	3.27
2880	7153	8.380743	TCTTCTTTCAGGTCGTCTATAGATAC	57.619	38.462	5.57	7.59	0.00	2.24
2888	7161	1.273886	GCCTCTTCTTTCAGGTCGTCT	59.726	52.381	0.00	0.00	31.65	4.18
2979	7633	1.075542	TTGTTACTGCTTGGATCGCG	58.924	50.000	0.00	0.00	0.00	5.87
3013	7667	1.338337	ACATGCGAGGAGAAGATACGG	59.662	52.381	0.00	0.00	0.00	4.02
3030	7684	4.548451	TGACTGAATGAGAAGAGCACAT	57.452	40.909	0.00	0.00	0.00	3.21
3063	7838	4.122776	GACATATTCACAGGTACAGCAGG	58.877	47.826	0.00	0.00	0.00	4.85
3114	10282	1.944892	GCTGTCTCTCTGCAATGCACT	60.945	52.381	2.72	0.00	40.09	4.40
3136	10304	3.674997	TCATGACCTTCACTTACTTGCC	58.325	45.455	0.00	0.00	0.00	4.52
3190	10500	1.309499	TATGCGAAAACCAAGGCCGG	61.309	55.000	0.00	0.00	0.00	6.13
3384	10745	6.428771	GTGCACCACTAGTCCATTTAGTTAAA	59.571	38.462	5.22	0.00	0.00	1.52
3450	10819	3.121126	CGAACACGGTGCTAACTAAACAG	60.121	47.826	8.30	0.00	0.00	3.16
3458	10827	1.401931	GCTACTCGAACACGGTGCTAA	60.402	52.381	8.30	0.00	0.00	3.09

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.