Multiple sequence alignment - TraesCS2D01G323900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G323900 chr2D 100.000 3610 0 0 1 3610 416931295 416934904 0.000000e+00 6667.0
1 TraesCS2D01G323900 chr2D 89.831 295 30 0 7 301 406939341 406939635 2.630000e-101 379.0
2 TraesCS2D01G323900 chr2D 97.101 69 2 0 3361 3429 416934587 416934655 2.280000e-22 117.0
3 TraesCS2D01G323900 chr2D 97.101 69 2 0 3293 3361 416934655 416934723 2.280000e-22 117.0
4 TraesCS2D01G323900 chr2B 92.583 1591 84 18 299 1870 488912177 488913752 0.000000e+00 2254.0
5 TraesCS2D01G323900 chr2B 93.947 1140 57 8 2041 3172 488913738 488914873 0.000000e+00 1712.0
6 TraesCS2D01G323900 chr2B 93.667 300 18 1 7 306 488911833 488912131 7.110000e-122 448.0
7 TraesCS2D01G323900 chr2B 95.385 130 6 0 2229 2358 11940446 11940317 1.310000e-49 207.0
8 TraesCS2D01G323900 chr2B 86.260 131 15 3 307 436 471323655 471323527 4.860000e-29 139.0
9 TraesCS2D01G323900 chr2A 91.525 1239 75 16 2037 3255 573336800 573335572 0.000000e+00 1679.0
10 TraesCS2D01G323900 chr2A 93.094 724 33 6 678 1398 573338004 573337295 0.000000e+00 1044.0
11 TraesCS2D01G323900 chr2A 89.627 482 43 2 1396 1871 573337261 573336781 1.110000e-169 606.0
12 TraesCS2D01G323900 chr2A 88.814 295 33 0 7 301 574959863 574960157 2.650000e-96 363.0
13 TraesCS2D01G323900 chr2A 98.857 175 1 1 1870 2043 691479519 691479345 9.730000e-81 311.0
14 TraesCS2D01G323900 chr2A 87.817 197 20 4 3417 3610 573335503 573335308 1.010000e-55 228.0
15 TraesCS2D01G323900 chr2A 100.000 30 0 0 440 469 622287867 622287838 5.040000e-04 56.5
16 TraesCS2D01G323900 chr4B 94.296 561 30 2 2041 2599 631234941 631235501 0.000000e+00 857.0
17 TraesCS2D01G323900 chr7B 92.456 570 40 3 2037 2604 304271667 304271099 0.000000e+00 811.0
18 TraesCS2D01G323900 chr7B 98.315 178 2 1 1865 2042 129222265 129222441 9.730000e-81 311.0
19 TraesCS2D01G323900 chr7B 90.588 85 8 0 1196 1280 367496655 367496571 2.950000e-21 113.0
20 TraesCS2D01G323900 chr3B 92.705 562 37 4 2041 2599 743085542 743086102 0.000000e+00 808.0
21 TraesCS2D01G323900 chr3B 94.819 193 6 4 1865 2055 765088388 765088578 7.580000e-77 298.0
22 TraesCS2D01G323900 chr3B 93.701 127 8 0 2232 2358 670975041 670974915 1.320000e-44 191.0
23 TraesCS2D01G323900 chr3B 87.000 100 12 1 447 545 556966951 556966852 1.060000e-20 111.0
24 TraesCS2D01G323900 chr7D 83.857 446 51 8 7 431 208214057 208214502 4.340000e-109 405.0
25 TraesCS2D01G323900 chr7D 90.102 293 29 0 8 300 511690355 511690063 7.310000e-102 381.0
26 TraesCS2D01G323900 chr7D 100.000 48 0 0 2552 2599 335466755 335466802 4.960000e-14 89.8
27 TraesCS2D01G323900 chr7D 100.000 48 0 0 2552 2599 630001971 630002018 4.960000e-14 89.8
28 TraesCS2D01G323900 chrUn 88.776 294 33 0 7 300 20500398 20500105 9.530000e-96 361.0
29 TraesCS2D01G323900 chrUn 95.288 191 7 2 1854 2044 10129525 10129713 5.860000e-78 302.0
30 TraesCS2D01G323900 chrUn 79.793 193 31 4 447 639 20499938 20499754 2.260000e-27 134.0
31 TraesCS2D01G323900 chr6D 88.333 300 35 0 7 306 464067503 464067204 9.530000e-96 361.0
32 TraesCS2D01G323900 chr1D 88.776 294 33 0 7 300 454780595 454780888 9.530000e-96 361.0
33 TraesCS2D01G323900 chr1D 88.449 303 26 2 7 306 355145217 355145513 1.230000e-94 357.0
34 TraesCS2D01G323900 chr1D 86.897 145 16 3 293 436 355145566 355145708 3.730000e-35 159.0
35 TraesCS2D01G323900 chr5A 88.040 301 36 0 1 301 408179131 408178831 1.230000e-94 357.0
36 TraesCS2D01G323900 chr5A 81.818 143 20 6 501 639 408178615 408178475 8.190000e-22 115.0
37 TraesCS2D01G323900 chr5A 74.737 285 57 14 1000 1279 444522435 444522709 2.950000e-21 113.0
38 TraesCS2D01G323900 chr7A 97.790 181 4 0 1859 2039 223677563 223677383 2.710000e-81 313.0
39 TraesCS2D01G323900 chr7A 83.803 142 19 2 299 436 17814093 17813952 8.130000e-27 132.0
40 TraesCS2D01G323900 chr6B 95.050 202 4 5 1852 2050 602841121 602840923 2.710000e-81 313.0
41 TraesCS2D01G323900 chr6B 93.617 47 3 0 440 486 680474723 680474677 1.800000e-08 71.3
42 TraesCS2D01G323900 chr1B 97.312 186 2 3 1869 2051 321238238 321238423 2.710000e-81 313.0
43 TraesCS2D01G323900 chr1B 96.757 185 4 2 1871 2055 158536306 158536124 1.260000e-79 307.0
44 TraesCS2D01G323900 chr1A 98.305 177 2 1 1870 2045 276573455 276573279 3.500000e-80 309.0
45 TraesCS2D01G323900 chr1A 86.897 145 17 2 293 436 454741148 454741291 1.040000e-35 161.0
46 TraesCS2D01G323900 chr5B 76.738 374 54 20 296 639 275505951 275505581 1.030000e-40 178.0
47 TraesCS2D01G323900 chr5B 87.209 86 11 0 1194 1279 403696537 403696622 8.250000e-17 99.0
48 TraesCS2D01G323900 chr5B 80.916 131 13 7 439 568 415662288 415662169 3.840000e-15 93.5
49 TraesCS2D01G323900 chr5B 100.000 28 0 0 440 467 148496418 148496445 7.000000e-03 52.8
50 TraesCS2D01G323900 chr3D 84.615 143 19 3 296 436 140432465 140432324 4.860000e-29 139.0
51 TraesCS2D01G323900 chr3D 100.000 48 0 0 2552 2599 385610641 385610688 4.960000e-14 89.8
52 TraesCS2D01G323900 chr5D 83.217 143 21 2 296 436 490162666 490162807 1.050000e-25 128.0
53 TraesCS2D01G323900 chr5D 86.667 90 12 0 1193 1282 347483851 347483762 2.290000e-17 100.0
54 TraesCS2D01G323900 chr5D 95.349 43 2 0 2316 2358 425527703 425527661 6.470000e-08 69.4
55 TraesCS2D01G323900 chr4D 79.487 156 25 5 439 587 47728388 47728543 1.770000e-18 104.0
56 TraesCS2D01G323900 chr4D 98.039 51 1 0 2552 2602 492075028 492074978 4.960000e-14 89.8
57 TraesCS2D01G323900 chr4D 95.349 43 2 0 2316 2358 492075070 492075028 6.470000e-08 69.4
58 TraesCS2D01G323900 chr3A 79.762 84 14 2 559 639 115845171 115845088 1.400000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G323900 chr2D 416931295 416934904 3609 False 2300.333333 6667 98.067333 1 3610 3 chr2D.!!$F2 3609
1 TraesCS2D01G323900 chr2B 488911833 488914873 3040 False 1471.333333 2254 93.399000 7 3172 3 chr2B.!!$F1 3165
2 TraesCS2D01G323900 chr2A 573335308 573338004 2696 True 889.250000 1679 90.515750 678 3610 4 chr2A.!!$R3 2932
3 TraesCS2D01G323900 chr4B 631234941 631235501 560 False 857.000000 857 94.296000 2041 2599 1 chr4B.!!$F1 558
4 TraesCS2D01G323900 chr7B 304271099 304271667 568 True 811.000000 811 92.456000 2037 2604 1 chr7B.!!$R1 567
5 TraesCS2D01G323900 chr3B 743085542 743086102 560 False 808.000000 808 92.705000 2041 2599 1 chr3B.!!$F1 558
6 TraesCS2D01G323900 chrUn 20499754 20500398 644 True 247.500000 361 84.284500 7 639 2 chrUn.!!$R1 632
7 TraesCS2D01G323900 chr5A 408178475 408179131 656 True 236.000000 357 84.929000 1 639 2 chr5A.!!$R1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 709 0.031449 AATTTGCGGGTCGTTGTTGG 59.969 50.0 0.0 0.0 0.0 3.77 F
650 712 0.035036 TTGCGGGTCGTTGTTGGATA 59.965 50.0 0.0 0.0 0.0 2.59 F
1910 2022 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.0 0.0 0.0 34.1 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2048 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.0 8.73 0.0 40.08 4.58 R
1979 2091 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.0 0.00 0.0 0.00 1.28 R
3398 3548 0.030399 ATAAGCCGGGTAAGAGGGGT 60.030 55.0 6.57 0.0 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 157 3.274288 GAAGGTCATGCTCGAGGAAAAT 58.726 45.455 11.77 0.00 0.00 1.82
294 295 0.036732 AGAAAGATCAGTTGGCGGCA 59.963 50.000 7.97 7.97 0.00 5.69
317 377 2.280524 CGGCGACACCACCTTGAA 60.281 61.111 0.00 0.00 39.03 2.69
326 386 1.073199 CCACCTTGAACGGGAAGCT 59.927 57.895 0.00 0.00 0.00 3.74
421 483 6.972901 GGGCATGTAAAAACTAAGCATACTTC 59.027 38.462 0.00 0.00 37.33 3.01
422 484 7.148069 GGGCATGTAAAAACTAAGCATACTTCT 60.148 37.037 0.00 0.00 37.33 2.85
424 486 8.669243 GCATGTAAAAACTAAGCATACTTCTCT 58.331 33.333 0.00 0.00 37.33 3.10
467 529 4.162131 ACTTGCCTCTTTTTGGTTGTGATT 59.838 37.500 0.00 0.00 0.00 2.57
469 531 3.703556 TGCCTCTTTTTGGTTGTGATTGA 59.296 39.130 0.00 0.00 0.00 2.57
573 635 0.814010 GAATAGCGTTGGATGGCGGT 60.814 55.000 0.00 0.00 41.73 5.68
574 636 0.814010 AATAGCGTTGGATGGCGGTC 60.814 55.000 0.00 0.00 39.57 4.79
610 672 1.122019 ACAGACTGGTCCCTGTCCAC 61.122 60.000 16.87 0.00 43.12 4.02
611 673 1.908793 AGACTGGTCCCTGTCCACG 60.909 63.158 16.87 0.00 43.12 4.94
618 680 0.541863 GTCCCTGTCCACGGATGAAT 59.458 55.000 0.00 0.00 0.00 2.57
629 691 2.159430 CACGGATGAATGCAGAACGAAA 59.841 45.455 0.00 0.00 0.00 3.46
633 695 4.263677 CGGATGAATGCAGAACGAAATTTG 59.736 41.667 0.00 0.00 0.00 2.32
644 706 0.040781 CGAAATTTGCGGGTCGTTGT 60.041 50.000 0.00 0.00 0.00 3.32
645 707 1.598430 CGAAATTTGCGGGTCGTTGTT 60.598 47.619 0.00 0.00 0.00 2.83
647 709 0.031449 AATTTGCGGGTCGTTGTTGG 59.969 50.000 0.00 0.00 0.00 3.77
648 710 0.820074 ATTTGCGGGTCGTTGTTGGA 60.820 50.000 0.00 0.00 0.00 3.53
649 711 0.820074 TTTGCGGGTCGTTGTTGGAT 60.820 50.000 0.00 0.00 0.00 3.41
650 712 0.035036 TTGCGGGTCGTTGTTGGATA 59.965 50.000 0.00 0.00 0.00 2.59
651 713 0.671163 TGCGGGTCGTTGTTGGATAC 60.671 55.000 0.00 0.00 0.00 2.24
731 795 6.169287 CTTTTCTAACGAACAAAAGCGAAC 57.831 37.500 0.00 0.00 32.04 3.95
862 926 1.065928 CGTCCGATGTAGGTCAGGC 59.934 63.158 0.00 0.00 0.00 4.85
909 974 2.841266 TCCTCGAACCATCCCACAATTA 59.159 45.455 0.00 0.00 0.00 1.40
1086 1151 2.983192 TGTCAAAACCCCAGGTGAGATA 59.017 45.455 0.00 0.00 35.34 1.98
1098 1163 2.363680 AGGTGAGATATGCGTTCTCCAG 59.636 50.000 12.59 0.00 39.10 3.86
1322 1387 1.714899 CGAACCATTGGCGTGGATCC 61.715 60.000 14.75 4.20 42.02 3.36
1327 1392 0.734889 CATTGGCGTGGATCCAGTTC 59.265 55.000 16.81 7.93 34.66 3.01
1487 1593 6.983474 TGTATACACATTGGTGATGTTGAG 57.017 37.500 0.08 0.00 46.80 3.02
1724 1836 7.852945 GGAAGATTGCTATTACAAATGAACGAG 59.147 37.037 0.00 0.00 32.27 4.18
1772 1884 1.636148 ATTTGTCACCATTGCAGCCT 58.364 45.000 0.00 0.00 0.00 4.58
1787 1899 4.272489 TGCAGCCTAGCATAAACAATCTT 58.728 39.130 0.00 0.00 40.11 2.40
1815 1927 8.667463 GTTGTAATGCCTAAAAACCGTAGAATA 58.333 33.333 0.00 0.00 0.00 1.75
1847 1959 9.520204 CTAATGCTAGTTGGTTAATTTTCATGG 57.480 33.333 0.00 0.00 0.00 3.66
1848 1960 6.279513 TGCTAGTTGGTTAATTTTCATGGG 57.720 37.500 0.00 0.00 0.00 4.00
1849 1961 5.109210 GCTAGTTGGTTAATTTTCATGGGC 58.891 41.667 0.00 0.00 0.00 5.36
1850 1962 4.551702 AGTTGGTTAATTTTCATGGGCC 57.448 40.909 0.00 0.00 0.00 5.80
1852 1964 4.597075 AGTTGGTTAATTTTCATGGGCCTT 59.403 37.500 4.53 0.00 0.00 4.35
1853 1965 5.073008 AGTTGGTTAATTTTCATGGGCCTTT 59.927 36.000 4.53 0.00 0.00 3.11
1855 1967 4.594920 TGGTTAATTTTCATGGGCCTTTGA 59.405 37.500 4.53 5.27 0.00 2.69
1856 1968 5.250313 TGGTTAATTTTCATGGGCCTTTGAT 59.750 36.000 4.53 0.00 0.00 2.57
1857 1969 6.441924 TGGTTAATTTTCATGGGCCTTTGATA 59.558 34.615 4.53 0.48 0.00 2.15
1858 1970 7.127032 TGGTTAATTTTCATGGGCCTTTGATAT 59.873 33.333 4.53 2.73 0.00 1.63
1859 1971 7.992608 GGTTAATTTTCATGGGCCTTTGATATT 59.007 33.333 4.53 12.33 0.00 1.28
1863 1975 6.669125 TTTCATGGGCCTTTGATATTATGG 57.331 37.500 4.53 0.00 0.00 2.74
1864 1976 5.337956 TCATGGGCCTTTGATATTATGGT 57.662 39.130 4.53 0.00 0.00 3.55
1865 1977 5.714863 TCATGGGCCTTTGATATTATGGTT 58.285 37.500 4.53 0.00 0.00 3.67
1866 1978 6.142498 TCATGGGCCTTTGATATTATGGTTT 58.858 36.000 4.53 0.00 0.00 3.27
1867 1979 7.301420 TCATGGGCCTTTGATATTATGGTTTA 58.699 34.615 4.53 0.00 0.00 2.01
1868 1980 7.955185 TCATGGGCCTTTGATATTATGGTTTAT 59.045 33.333 4.53 0.00 0.00 1.40
1869 1981 8.596293 CATGGGCCTTTGATATTATGGTTTATT 58.404 33.333 4.53 0.00 0.00 1.40
1870 1982 9.836179 ATGGGCCTTTGATATTATGGTTTATTA 57.164 29.630 4.53 0.00 0.00 0.98
1871 1983 9.308000 TGGGCCTTTGATATTATGGTTTATTAG 57.692 33.333 4.53 0.00 0.00 1.73
1872 1984 9.528489 GGGCCTTTGATATTATGGTTTATTAGA 57.472 33.333 0.84 0.00 0.00 2.10
1878 1990 9.739276 TTGATATTATGGTTTATTAGAGGGCAG 57.261 33.333 0.00 0.00 0.00 4.85
1879 1991 8.328758 TGATATTATGGTTTATTAGAGGGCAGG 58.671 37.037 0.00 0.00 0.00 4.85
1880 1992 2.729028 TGGTTTATTAGAGGGCAGGC 57.271 50.000 0.00 0.00 0.00 4.85
1881 1993 1.214424 TGGTTTATTAGAGGGCAGGCC 59.786 52.381 4.33 4.33 0.00 5.19
1882 1994 1.495148 GGTTTATTAGAGGGCAGGCCT 59.505 52.381 17.36 17.36 36.10 5.19
1883 1995 2.576615 GTTTATTAGAGGGCAGGCCTG 58.423 52.381 29.34 29.34 36.10 4.85
1884 1996 1.140312 TTATTAGAGGGCAGGCCTGG 58.860 55.000 33.46 15.81 36.10 4.45
1897 2009 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
1898 2010 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
1899 2011 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
1900 2012 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
1901 2013 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
1902 2014 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
1903 2015 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
1904 2016 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
1905 2017 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
1906 2018 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
1907 2019 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
1908 2020 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
1909 2021 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
1910 2022 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
1911 2023 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
1912 2024 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
1913 2025 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
1914 2026 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
1915 2027 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
1916 2028 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
1917 2029 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
1918 2030 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
1919 2031 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
1920 2032 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
1921 2033 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
1922 2034 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
1923 2035 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
1924 2036 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
1925 2037 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
1926 2038 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
1927 2039 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
1928 2040 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
1929 2041 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
1930 2042 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
1931 2043 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
1932 2044 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
1933 2045 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
1934 2046 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
1945 2057 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
1946 2058 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
1947 2059 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
1948 2060 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
1949 2061 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
1950 2062 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
1951 2063 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
1952 2064 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
1953 2065 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
1954 2066 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
1955 2067 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
1956 2068 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
1957 2069 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
1958 2070 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
1970 2082 2.191128 CACTTTGCAGGGCTAAGACT 57.809 50.000 16.92 0.00 42.20 3.24
1971 2083 3.334583 CACTTTGCAGGGCTAAGACTA 57.665 47.619 16.92 0.00 42.20 2.59
1972 2084 3.265791 CACTTTGCAGGGCTAAGACTAG 58.734 50.000 16.92 0.00 42.20 2.57
1973 2085 2.237392 ACTTTGCAGGGCTAAGACTAGG 59.763 50.000 16.92 0.00 42.20 3.02
1974 2086 1.952621 TTGCAGGGCTAAGACTAGGT 58.047 50.000 0.00 0.00 0.00 3.08
1975 2087 1.952621 TGCAGGGCTAAGACTAGGTT 58.047 50.000 0.00 0.00 0.00 3.50
1976 2088 1.831736 TGCAGGGCTAAGACTAGGTTC 59.168 52.381 0.00 0.00 0.00 3.62
1977 2089 1.139256 GCAGGGCTAAGACTAGGTTCC 59.861 57.143 0.00 0.00 0.00 3.62
1978 2090 2.753247 CAGGGCTAAGACTAGGTTCCT 58.247 52.381 0.00 0.00 0.00 3.36
1979 2091 3.912248 CAGGGCTAAGACTAGGTTCCTA 58.088 50.000 0.00 0.00 0.00 2.94
1980 2092 4.484912 CAGGGCTAAGACTAGGTTCCTAT 58.515 47.826 0.00 0.00 0.00 2.57
1981 2093 5.642165 CAGGGCTAAGACTAGGTTCCTATA 58.358 45.833 0.00 0.00 0.00 1.31
1982 2094 6.075984 CAGGGCTAAGACTAGGTTCCTATAA 58.924 44.000 0.00 0.00 0.00 0.98
1983 2095 6.726764 CAGGGCTAAGACTAGGTTCCTATAAT 59.273 42.308 0.00 0.00 0.00 1.28
1984 2096 6.955267 AGGGCTAAGACTAGGTTCCTATAATC 59.045 42.308 0.00 0.00 0.00 1.75
1985 2097 6.154877 GGGCTAAGACTAGGTTCCTATAATCC 59.845 46.154 0.00 0.00 0.00 3.01
1986 2098 6.154877 GGCTAAGACTAGGTTCCTATAATCCC 59.845 46.154 0.00 0.00 0.00 3.85
1987 2099 6.955267 GCTAAGACTAGGTTCCTATAATCCCT 59.045 42.308 0.00 0.00 0.00 4.20
1988 2100 7.123098 GCTAAGACTAGGTTCCTATAATCCCTC 59.877 44.444 0.00 0.00 0.00 4.30
1989 2101 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
1990 2102 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
1991 2103 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
1992 2104 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
1993 2105 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
1994 2106 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
1995 2107 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
1996 2108 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
1997 2109 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
1998 2110 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
1999 2111 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
2000 2112 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
2002 2114 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
2003 2115 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
2004 2116 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
2005 2117 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
2006 2118 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
2007 2119 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
2008 2120 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
2015 2127 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
2016 2128 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
2017 2129 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
2018 2130 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
2019 2131 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
2020 2132 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
2021 2133 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
2022 2134 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
2023 2135 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
2024 2136 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
2025 2137 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
2026 2138 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
2027 2139 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
2028 2140 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
2029 2141 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
2030 2142 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
2031 2143 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
2032 2144 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
2033 2145 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
2034 2146 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
2035 2147 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
2071 2185 5.971202 GGTTTATTGCTGTCCATGATTTACG 59.029 40.000 0.00 0.00 0.00 3.18
2077 2191 3.198068 CTGTCCATGATTTACGAGTGGG 58.802 50.000 0.00 0.00 0.00 4.61
2081 2195 3.069586 TCCATGATTTACGAGTGGGCTAG 59.930 47.826 0.00 0.00 0.00 3.42
2106 2220 7.760340 AGGTGAGCTTAAATAGAACGAGTAAAG 59.240 37.037 0.00 0.00 0.00 1.85
2118 2232 3.991367 ACGAGTAAAGGAACAAGTGGAG 58.009 45.455 0.00 0.00 0.00 3.86
2126 2240 0.312102 GAACAAGTGGAGTTGCTGGC 59.688 55.000 0.00 0.00 0.00 4.85
2130 2244 1.999634 AAGTGGAGTTGCTGGCTGGT 62.000 55.000 0.00 0.00 0.00 4.00
2143 2257 6.509418 TGCTGGCTGGTAGTTTAAATAAAG 57.491 37.500 0.00 0.00 0.00 1.85
2145 2259 5.678871 GCTGGCTGGTAGTTTAAATAAAGCC 60.679 44.000 15.89 15.89 38.99 4.35
2154 2268 8.974408 GGTAGTTTAAATAAAGCCACTGTTTTG 58.026 33.333 0.00 0.00 0.00 2.44
2157 2271 7.709182 AGTTTAAATAAAGCCACTGTTTTGGTC 59.291 33.333 0.00 0.00 39.09 4.02
2299 2416 8.620416 TCATGTTGTATAATATCAGTGGTTTGC 58.380 33.333 0.00 0.00 0.00 3.68
2452 2569 1.630878 CAGGCTGTTAGGGAGAGGTTT 59.369 52.381 6.28 0.00 0.00 3.27
2459 2576 3.181434 TGTTAGGGAGAGGTTTGTGCATT 60.181 43.478 0.00 0.00 0.00 3.56
2540 2658 2.270352 TCATCCGTGCTTTCCTTGTT 57.730 45.000 0.00 0.00 0.00 2.83
2663 2781 2.156504 GTGATGAGTGTTCAGTCAAGCG 59.843 50.000 13.23 0.00 36.61 4.68
2698 2816 3.926058 AGCCCGTGGTTACTGAATTAT 57.074 42.857 0.00 0.00 0.00 1.28
2699 2817 4.230745 AGCCCGTGGTTACTGAATTATT 57.769 40.909 0.00 0.00 0.00 1.40
2700 2818 5.362105 AGCCCGTGGTTACTGAATTATTA 57.638 39.130 0.00 0.00 0.00 0.98
2730 2848 6.265422 AGAGATTTCCGTCCATTTTCTTGTTT 59.735 34.615 0.00 0.00 0.00 2.83
2731 2849 6.215845 AGATTTCCGTCCATTTTCTTGTTTG 58.784 36.000 0.00 0.00 0.00 2.93
2732 2850 5.584253 TTTCCGTCCATTTTCTTGTTTGA 57.416 34.783 0.00 0.00 0.00 2.69
2733 2851 4.829064 TCCGTCCATTTTCTTGTTTGAG 57.171 40.909 0.00 0.00 0.00 3.02
2767 2885 5.127194 TGGATCTCATTACCCGTATGCTATC 59.873 44.000 0.00 0.00 0.00 2.08
2790 2908 3.504520 ACTTTGTGTTTGACGGTTTGACT 59.495 39.130 0.00 0.00 0.00 3.41
2839 2957 6.068461 TGGATACCCTTTGCAGTATTGTTA 57.932 37.500 0.00 0.00 29.37 2.41
2849 2967 5.794687 TGCAGTATTGTTAGTGGATTTCG 57.205 39.130 0.00 0.00 30.64 3.46
2877 2995 2.229784 AGCTGCAGTATTTTCTGGCAAC 59.770 45.455 16.64 0.00 36.12 4.17
2905 3023 2.816087 AGATTCTTGATGCAGCGTTGTT 59.184 40.909 0.00 0.00 0.00 2.83
2909 3027 0.040157 TTGATGCAGCGTTGTTGCTC 60.040 50.000 7.15 3.46 45.23 4.26
2914 3032 1.606189 TGCAGCGTTGTTGCTCATTTA 59.394 42.857 7.15 0.00 45.23 1.40
2931 3049 8.946085 TGCTCATTTACTATTCAAAACCTACAG 58.054 33.333 0.00 0.00 0.00 2.74
2949 3067 1.134995 CAGCCGAGTACATCTGCTTGA 60.135 52.381 7.97 0.00 45.19 3.02
2970 3088 4.095036 TGAACAGCAACACACGATTGTTTA 59.905 37.500 4.04 0.00 37.62 2.01
2973 3091 5.212194 ACAGCAACACACGATTGTTTATTC 58.788 37.500 4.04 0.00 37.62 1.75
2994 3112 2.476352 CGTGTGTCTAGTCCATCGAGTG 60.476 54.545 0.00 0.00 0.00 3.51
3025 3143 7.876936 ATATTTGTCATGAAACAGAGCTGAT 57.123 32.000 4.21 0.00 0.00 2.90
3037 3155 8.409371 TGAAACAGAGCTGATCTATGTAACTAG 58.591 37.037 4.21 0.00 45.71 2.57
3079 3201 1.451387 GGTCCCGGGTGTGCTATTG 60.451 63.158 22.86 0.00 0.00 1.90
3137 3259 3.668757 CGATGGCAATAGCGATTGATTGG 60.669 47.826 21.93 4.55 44.59 3.16
3172 3302 3.939740 AGGTATCATGCAACATGGTCT 57.060 42.857 7.66 0.00 0.00 3.85
3173 3303 5.602561 AGTAGGTATCATGCAACATGGTCTA 59.397 40.000 7.66 0.00 0.00 2.59
3174 3304 4.965814 AGGTATCATGCAACATGGTCTAG 58.034 43.478 7.66 0.00 0.00 2.43
3175 3305 3.499918 GGTATCATGCAACATGGTCTAGC 59.500 47.826 7.66 0.00 0.00 3.42
3176 3306 1.655484 TCATGCAACATGGTCTAGCG 58.345 50.000 7.66 0.00 0.00 4.26
3177 3307 0.028505 CATGCAACATGGTCTAGCGC 59.971 55.000 0.00 0.00 0.00 5.92
3178 3308 0.392863 ATGCAACATGGTCTAGCGCA 60.393 50.000 11.47 0.00 0.00 6.09
3179 3309 1.020861 TGCAACATGGTCTAGCGCAG 61.021 55.000 11.47 5.22 0.00 5.18
3180 3310 1.021390 GCAACATGGTCTAGCGCAGT 61.021 55.000 11.47 0.00 0.00 4.40
3181 3311 1.442769 CAACATGGTCTAGCGCAGTT 58.557 50.000 11.47 0.00 0.00 3.16
3182 3312 1.129251 CAACATGGTCTAGCGCAGTTG 59.871 52.381 11.47 7.31 0.00 3.16
3183 3313 0.608130 ACATGGTCTAGCGCAGTTGA 59.392 50.000 11.47 0.00 0.00 3.18
3184 3314 1.002366 CATGGTCTAGCGCAGTTGAC 58.998 55.000 11.47 11.62 0.00 3.18
3185 3315 0.608130 ATGGTCTAGCGCAGTTGACA 59.392 50.000 11.47 1.07 0.00 3.58
3186 3316 0.608130 TGGTCTAGCGCAGTTGACAT 59.392 50.000 11.47 0.00 0.00 3.06
3187 3317 1.002366 GGTCTAGCGCAGTTGACATG 58.998 55.000 11.47 0.00 0.00 3.21
3195 3328 3.131223 AGCGCAGTTGACATGTATAGACT 59.869 43.478 11.47 0.00 0.00 3.24
3202 3335 7.759886 GCAGTTGACATGTATAGACTTCAAGTA 59.240 37.037 0.00 0.00 29.47 2.24
3204 3337 8.251721 AGTTGACATGTATAGACTTCAAGTACC 58.748 37.037 0.00 0.00 29.10 3.34
3207 3340 7.834681 TGACATGTATAGACTTCAAGTACCTCT 59.165 37.037 0.00 0.00 0.00 3.69
3208 3341 8.596781 ACATGTATAGACTTCAAGTACCTCTT 57.403 34.615 0.00 0.00 36.75 2.85
3251 3388 0.102663 GGTTAGAGCTACAGCCGGAC 59.897 60.000 5.05 0.00 43.38 4.79
3255 3392 0.033405 AGAGCTACAGCCGGACCTTA 60.033 55.000 5.05 0.00 43.38 2.69
3257 3394 1.413077 GAGCTACAGCCGGACCTTATT 59.587 52.381 5.05 0.00 43.38 1.40
3258 3395 1.139058 AGCTACAGCCGGACCTTATTG 59.861 52.381 5.05 0.00 43.38 1.90
3259 3396 1.583054 CTACAGCCGGACCTTATTGC 58.417 55.000 5.05 0.00 0.00 3.56
3260 3397 0.179468 TACAGCCGGACCTTATTGCC 59.821 55.000 5.05 0.00 0.00 4.52
3261 3398 1.077787 CAGCCGGACCTTATTGCCA 60.078 57.895 5.05 0.00 0.00 4.92
3262 3399 0.466189 CAGCCGGACCTTATTGCCAT 60.466 55.000 5.05 0.00 0.00 4.40
3263 3400 0.466189 AGCCGGACCTTATTGCCATG 60.466 55.000 5.05 0.00 0.00 3.66
3264 3401 0.465460 GCCGGACCTTATTGCCATGA 60.465 55.000 5.05 0.00 0.00 3.07
3266 3403 1.408127 CCGGACCTTATTGCCATGACA 60.408 52.381 0.00 0.00 0.00 3.58
3268 3405 2.301346 GGACCTTATTGCCATGACAGG 58.699 52.381 0.00 0.00 0.00 4.00
3269 3406 2.357154 GGACCTTATTGCCATGACAGGT 60.357 50.000 0.00 0.00 37.35 4.00
3270 3407 2.684881 GACCTTATTGCCATGACAGGTG 59.315 50.000 0.00 0.00 34.67 4.00
3271 3408 2.308570 ACCTTATTGCCATGACAGGTGA 59.691 45.455 0.00 0.00 33.22 4.02
3272 3409 3.245229 ACCTTATTGCCATGACAGGTGAA 60.245 43.478 0.00 0.00 33.22 3.18
3274 3411 4.220382 CCTTATTGCCATGACAGGTGAAAA 59.780 41.667 0.00 0.00 0.00 2.29
3275 3412 5.279406 CCTTATTGCCATGACAGGTGAAAAA 60.279 40.000 0.00 0.00 0.00 1.94
3298 3448 2.305927 CTGTGACCCAACCATACCTCTT 59.694 50.000 0.00 0.00 0.00 2.85
3299 3449 2.039746 TGTGACCCAACCATACCTCTTG 59.960 50.000 0.00 0.00 0.00 3.02
3302 3452 4.080526 GTGACCCAACCATACCTCTTGTAT 60.081 45.833 0.00 0.00 40.91 2.29
3303 3453 4.163458 TGACCCAACCATACCTCTTGTATC 59.837 45.833 0.00 0.00 38.10 2.24
3305 3455 3.494398 CCCAACCATACCTCTTGTATCGG 60.494 52.174 0.00 0.00 38.10 4.18
3308 3458 2.963782 ACCATACCTCTTGTATCGGTCC 59.036 50.000 0.00 0.00 38.10 4.46
3309 3459 3.231818 CCATACCTCTTGTATCGGTCCT 58.768 50.000 0.00 0.00 38.10 3.85
3313 3463 6.095160 CCATACCTCTTGTATCGGTCCTATAC 59.905 46.154 6.60 6.60 38.10 1.47
3314 3464 5.057843 ACCTCTTGTATCGGTCCTATACA 57.942 43.478 11.31 11.31 37.89 2.29
3316 3466 6.787170 ACCTCTTGTATCGGTCCTATACATA 58.213 40.000 15.10 7.63 39.06 2.29
3317 3467 7.411808 ACCTCTTGTATCGGTCCTATACATAT 58.588 38.462 15.10 0.41 39.06 1.78
3319 3469 7.201830 CCTCTTGTATCGGTCCTATACATATGG 60.202 44.444 15.10 12.91 39.06 2.74
3320 3470 6.605995 TCTTGTATCGGTCCTATACATATGGG 59.394 42.308 15.10 0.00 39.06 4.00
3321 3471 5.834460 TGTATCGGTCCTATACATATGGGT 58.166 41.667 11.31 0.00 35.44 4.51
3322 3472 6.258354 TGTATCGGTCCTATACATATGGGTT 58.742 40.000 11.31 0.00 35.44 4.11
3323 3473 5.677319 ATCGGTCCTATACATATGGGTTG 57.323 43.478 7.80 0.00 35.94 3.77
3324 3474 4.743124 TCGGTCCTATACATATGGGTTGA 58.257 43.478 7.80 0.00 35.94 3.18
3325 3475 4.525487 TCGGTCCTATACATATGGGTTGAC 59.475 45.833 7.80 6.85 35.94 3.18
3326 3476 4.322499 CGGTCCTATACATATGGGTTGACC 60.322 50.000 17.09 17.09 35.94 4.02
3328 3478 3.835978 TCCTATACATATGGGTTGACCGG 59.164 47.826 7.80 0.00 44.64 5.28
3329 3479 2.561478 ATACATATGGGTTGACCGGC 57.439 50.000 0.00 0.00 44.64 6.13
3330 3480 1.205055 TACATATGGGTTGACCGGCA 58.795 50.000 0.00 0.00 44.64 5.69
3331 3481 0.107214 ACATATGGGTTGACCGGCAG 60.107 55.000 0.00 0.00 44.64 4.85
3332 3482 1.152963 ATATGGGTTGACCGGCAGC 60.153 57.895 0.00 2.34 44.64 5.25
3333 3483 2.624674 ATATGGGTTGACCGGCAGCC 62.625 60.000 18.84 18.84 46.27 4.85
3337 3487 4.021925 GTTGACCGGCAGCCCTCT 62.022 66.667 5.63 0.00 0.00 3.69
3338 3488 3.249189 TTGACCGGCAGCCCTCTT 61.249 61.111 5.63 0.00 0.00 2.85
3339 3489 1.916273 TTGACCGGCAGCCCTCTTA 60.916 57.895 5.63 0.00 0.00 2.10
3340 3490 2.180159 TTGACCGGCAGCCCTCTTAC 62.180 60.000 5.63 0.00 0.00 2.34
3341 3491 3.387225 GACCGGCAGCCCTCTTACC 62.387 68.421 5.63 0.00 0.00 2.85
3342 3492 4.176752 CCGGCAGCCCTCTTACCC 62.177 72.222 5.63 0.00 0.00 3.69
3343 3493 4.530857 CGGCAGCCCTCTTACCCG 62.531 72.222 5.63 0.00 0.00 5.28
3344 3494 4.176752 GGCAGCCCTCTTACCCGG 62.177 72.222 0.00 0.00 0.00 5.73
3345 3495 4.858680 GCAGCCCTCTTACCCGGC 62.859 72.222 0.00 0.00 43.35 6.13
3348 3498 3.638132 GCCCTCTTACCCGGCTTA 58.362 61.111 0.00 0.00 39.70 3.09
3349 3499 2.143129 GCCCTCTTACCCGGCTTAT 58.857 57.895 0.00 0.00 39.70 1.73
3350 3500 1.345063 GCCCTCTTACCCGGCTTATA 58.655 55.000 0.00 0.00 39.70 0.98
3351 3501 1.907255 GCCCTCTTACCCGGCTTATAT 59.093 52.381 0.00 0.00 39.70 0.86
3352 3502 2.093606 GCCCTCTTACCCGGCTTATATC 60.094 54.545 0.00 0.00 39.70 1.63
3353 3503 2.500504 CCCTCTTACCCGGCTTATATCC 59.499 54.545 0.00 0.00 0.00 2.59
3354 3504 3.442076 CCTCTTACCCGGCTTATATCCT 58.558 50.000 0.00 0.00 0.00 3.24
3355 3505 3.195825 CCTCTTACCCGGCTTATATCCTG 59.804 52.174 0.00 0.00 0.00 3.86
3356 3506 3.170717 TCTTACCCGGCTTATATCCTGG 58.829 50.000 0.00 0.00 34.55 4.45
3357 3507 1.946984 TACCCGGCTTATATCCTGGG 58.053 55.000 13.11 13.11 40.71 4.45
3358 3508 1.299976 CCCGGCTTATATCCTGGGC 59.700 63.158 0.00 0.00 33.19 5.36
3359 3509 1.079127 CCGGCTTATATCCTGGGCG 60.079 63.158 0.00 0.00 45.04 6.13
3361 3511 3.534721 GGCTTATATCCTGGGCGAC 57.465 57.895 0.00 0.00 0.00 5.19
3373 3523 2.638154 GGCGACCTCTCGTATCGG 59.362 66.667 0.00 0.00 42.33 4.18
3374 3524 2.185494 GGCGACCTCTCGTATCGGT 61.185 63.158 0.00 0.00 42.33 4.69
3375 3525 1.279238 GCGACCTCTCGTATCGGTC 59.721 63.158 0.00 0.00 42.33 4.79
3376 3526 1.940334 CGACCTCTCGTATCGGTCC 59.060 63.158 0.00 0.00 43.30 4.46
3377 3527 0.532417 CGACCTCTCGTATCGGTCCT 60.532 60.000 0.00 0.00 43.30 3.85
3378 3528 1.269988 CGACCTCTCGTATCGGTCCTA 60.270 57.143 0.00 0.00 43.30 2.94
3379 3529 2.612471 CGACCTCTCGTATCGGTCCTAT 60.612 54.545 0.00 0.00 43.30 2.57
3380 3530 3.367806 CGACCTCTCGTATCGGTCCTATA 60.368 52.174 0.00 0.00 43.30 1.31
3381 3531 3.932089 GACCTCTCGTATCGGTCCTATAC 59.068 52.174 3.86 3.86 41.00 1.47
3382 3532 3.326006 ACCTCTCGTATCGGTCCTATACA 59.674 47.826 12.67 1.62 31.43 2.29
3383 3533 4.019501 ACCTCTCGTATCGGTCCTATACAT 60.020 45.833 12.67 0.00 31.43 2.29
3384 3534 5.188555 ACCTCTCGTATCGGTCCTATACATA 59.811 44.000 12.67 1.38 31.43 2.29
3385 3535 6.126825 ACCTCTCGTATCGGTCCTATACATAT 60.127 42.308 12.67 0.00 31.43 1.78
3386 3536 6.203145 CCTCTCGTATCGGTCCTATACATATG 59.797 46.154 12.67 0.00 31.43 1.78
3387 3537 6.053650 TCTCGTATCGGTCCTATACATATGG 58.946 44.000 12.67 0.00 31.43 2.74
3388 3538 5.128205 TCGTATCGGTCCTATACATATGGG 58.872 45.833 12.67 0.00 35.82 4.00
3389 3539 4.885907 CGTATCGGTCCTATACATATGGGT 59.114 45.833 12.67 0.00 35.94 4.51
3390 3540 5.359009 CGTATCGGTCCTATACATATGGGTT 59.641 44.000 12.67 0.00 35.94 4.11
3391 3541 5.677319 ATCGGTCCTATACATATGGGTTG 57.323 43.478 7.80 0.00 35.94 3.77
3392 3542 4.743124 TCGGTCCTATACATATGGGTTGA 58.257 43.478 7.80 0.00 35.94 3.18
3393 3543 4.525487 TCGGTCCTATACATATGGGTTGAC 59.475 45.833 7.80 6.85 35.94 3.18
3394 3544 4.322499 CGGTCCTATACATATGGGTTGACC 60.322 50.000 17.09 17.09 35.94 4.02
3395 3545 4.322499 GGTCCTATACATATGGGTTGACCG 60.322 50.000 7.80 0.00 44.64 4.79
3396 3546 3.835978 TCCTATACATATGGGTTGACCGG 59.164 47.826 7.80 0.00 44.64 5.28
3397 3547 2.561478 ATACATATGGGTTGACCGGC 57.439 50.000 0.00 0.00 44.64 6.13
3398 3548 1.205055 TACATATGGGTTGACCGGCA 58.795 50.000 0.00 0.00 44.64 5.69
3399 3549 0.393808 ACATATGGGTTGACCGGCAC 60.394 55.000 0.00 0.00 44.64 5.01
3400 3550 1.101049 CATATGGGTTGACCGGCACC 61.101 60.000 0.00 5.26 44.64 5.01
3401 3551 2.279037 ATATGGGTTGACCGGCACCC 62.279 60.000 24.43 24.43 44.64 4.61
3404 3554 4.717313 GGTTGACCGGCACCCCTC 62.717 72.222 0.00 0.00 0.00 4.30
3405 3555 3.637273 GTTGACCGGCACCCCTCT 61.637 66.667 0.00 0.00 0.00 3.69
3406 3556 2.852075 TTGACCGGCACCCCTCTT 60.852 61.111 0.00 0.00 0.00 2.85
3407 3557 1.536907 TTGACCGGCACCCCTCTTA 60.537 57.895 0.00 0.00 0.00 2.10
3408 3558 1.833787 TTGACCGGCACCCCTCTTAC 61.834 60.000 0.00 0.00 0.00 2.34
3409 3559 3.007323 ACCGGCACCCCTCTTACC 61.007 66.667 0.00 0.00 0.00 2.85
3410 3560 3.793888 CCGGCACCCCTCTTACCC 61.794 72.222 0.00 0.00 0.00 3.69
3411 3561 4.157120 CGGCACCCCTCTTACCCG 62.157 72.222 0.00 0.00 0.00 5.28
3412 3562 3.793888 GGCACCCCTCTTACCCGG 61.794 72.222 0.00 0.00 0.00 5.73
3413 3563 4.484872 GCACCCCTCTTACCCGGC 62.485 72.222 0.00 0.00 0.00 6.13
3414 3564 2.687566 CACCCCTCTTACCCGGCT 60.688 66.667 0.00 0.00 0.00 5.52
3415 3565 2.124312 ACCCCTCTTACCCGGCTT 59.876 61.111 0.00 0.00 0.00 4.35
3416 3566 0.979187 CACCCCTCTTACCCGGCTTA 60.979 60.000 0.00 0.00 0.00 3.09
3417 3567 0.030399 ACCCCTCTTACCCGGCTTAT 60.030 55.000 0.00 0.00 0.00 1.73
3418 3568 1.221265 ACCCCTCTTACCCGGCTTATA 59.779 52.381 0.00 0.00 0.00 0.98
3419 3569 2.158050 ACCCCTCTTACCCGGCTTATAT 60.158 50.000 0.00 0.00 0.00 0.86
3420 3570 2.500504 CCCCTCTTACCCGGCTTATATC 59.499 54.545 0.00 0.00 0.00 1.63
3421 3571 2.500504 CCCTCTTACCCGGCTTATATCC 59.499 54.545 0.00 0.00 0.00 2.59
3422 3572 3.442076 CCTCTTACCCGGCTTATATCCT 58.558 50.000 0.00 0.00 0.00 3.24
3423 3573 3.195825 CCTCTTACCCGGCTTATATCCTG 59.804 52.174 0.00 0.00 0.00 3.86
3424 3574 3.170717 TCTTACCCGGCTTATATCCTGG 58.829 50.000 0.00 0.00 34.55 4.45
3425 3575 1.946984 TACCCGGCTTATATCCTGGG 58.053 55.000 13.11 13.11 40.71 4.45
3426 3576 1.299976 CCCGGCTTATATCCTGGGC 59.700 63.158 0.00 0.00 33.19 5.36
3427 3577 1.079127 CCGGCTTATATCCTGGGCG 60.079 63.158 0.00 0.00 45.04 6.13
3430 3580 2.789409 GGCTTATATCCTGGGCGATT 57.211 50.000 0.00 0.00 0.00 3.34
3431 3581 2.359900 GGCTTATATCCTGGGCGATTG 58.640 52.381 0.00 0.00 0.00 2.67
3432 3582 2.290323 GGCTTATATCCTGGGCGATTGT 60.290 50.000 0.00 0.00 0.00 2.71
3435 3585 0.401738 ATATCCTGGGCGATTGTGGG 59.598 55.000 0.00 0.00 0.00 4.61
3446 3596 1.439543 GATTGTGGGGAGGCCTAGAT 58.560 55.000 4.42 0.00 0.00 1.98
3447 3597 1.349357 GATTGTGGGGAGGCCTAGATC 59.651 57.143 4.42 0.00 0.00 2.75
3451 3601 0.105453 TGGGGAGGCCTAGATCTGTC 60.105 60.000 4.42 0.00 0.00 3.51
3452 3602 0.834261 GGGGAGGCCTAGATCTGTCC 60.834 65.000 4.42 0.00 0.00 4.02
3460 3610 1.414181 CCTAGATCTGTCCGCCATGTT 59.586 52.381 5.18 0.00 0.00 2.71
3468 3618 0.387929 GTCCGCCATGTTAGATCCGA 59.612 55.000 0.00 0.00 0.00 4.55
3499 3650 1.615919 CCACCCTGACCCCACAAATAC 60.616 57.143 0.00 0.00 0.00 1.89
3502 3653 0.033503 CCTGACCCCACAAATACCCC 60.034 60.000 0.00 0.00 0.00 4.95
3543 3694 0.743345 GTAACCCTAGCCACTTGCCG 60.743 60.000 0.00 0.00 42.71 5.69
3558 3709 2.035442 GCCGCTCCACTTCACTTCC 61.035 63.158 0.00 0.00 0.00 3.46
3565 3716 0.393077 CCACTTCACTTCCAGTCCGT 59.607 55.000 0.00 0.00 0.00 4.69
3566 3717 1.502231 CACTTCACTTCCAGTCCGTG 58.498 55.000 0.00 0.00 0.00 4.94
3570 3721 4.681978 ACTTCCAGTCCGTGCCGC 62.682 66.667 0.00 0.00 0.00 6.53
3585 3736 4.148825 CGCTCCGTCCTTCCCCAG 62.149 72.222 0.00 0.00 0.00 4.45
3589 3740 2.685380 CCGTCCTTCCCCAGCTCT 60.685 66.667 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 8.567948 CACATTCAAGGTAAACATCTTGTACTT 58.432 33.333 0.00 0.00 40.67 2.24
302 303 2.604174 CCGTTCAAGGTGGTGTCGC 61.604 63.158 0.00 0.00 0.00 5.19
368 428 4.378459 CCAAAAGAACATAAGTCCGACAGC 60.378 45.833 0.40 0.00 0.00 4.40
434 496 4.650972 AAAGAGGCAAGTATGTTACCCA 57.349 40.909 0.00 0.00 0.00 4.51
496 558 1.213094 CCGATCCATACAACGCGTCC 61.213 60.000 14.44 0.00 0.00 4.79
544 606 4.801891 TCCAACGCTATTCGGTATATGTC 58.198 43.478 0.00 0.00 43.86 3.06
560 622 2.511600 GGAGACCGCCATCCAACG 60.512 66.667 0.00 0.00 35.54 4.10
595 657 2.748641 ATCCGTGGACAGGGACCAGT 62.749 60.000 15.19 0.00 46.67 4.00
599 661 0.541863 ATTCATCCGTGGACAGGGAC 59.458 55.000 15.19 0.00 46.67 4.46
603 665 1.012086 CTGCATTCATCCGTGGACAG 58.988 55.000 0.00 0.00 0.00 3.51
610 672 3.680642 ATTTCGTTCTGCATTCATCCG 57.319 42.857 0.00 0.00 0.00 4.18
611 673 4.032104 GCAAATTTCGTTCTGCATTCATCC 59.968 41.667 0.00 0.00 34.87 3.51
618 680 0.039617 CCCGCAAATTTCGTTCTGCA 60.040 50.000 8.50 0.00 34.39 4.41
629 691 0.820074 TCCAACAACGACCCGCAAAT 60.820 50.000 0.00 0.00 0.00 2.32
633 695 1.689352 CGTATCCAACAACGACCCGC 61.689 60.000 0.00 0.00 41.55 6.13
644 706 6.754193 TGTATATGAAGTGCATCGTATCCAA 58.246 36.000 5.50 0.00 38.44 3.53
645 707 6.339587 TGTATATGAAGTGCATCGTATCCA 57.660 37.500 5.50 0.00 38.44 3.41
647 709 6.453003 CGCTTGTATATGAAGTGCATCGTATC 60.453 42.308 5.50 0.88 38.44 2.24
648 710 5.346011 CGCTTGTATATGAAGTGCATCGTAT 59.654 40.000 7.12 7.12 38.44 3.06
649 711 4.679654 CGCTTGTATATGAAGTGCATCGTA 59.320 41.667 0.00 0.00 38.44 3.43
650 712 3.490896 CGCTTGTATATGAAGTGCATCGT 59.509 43.478 0.00 0.00 38.44 3.73
651 713 3.490896 ACGCTTGTATATGAAGTGCATCG 59.509 43.478 8.88 0.00 38.44 3.84
731 795 1.822371 CAAACCCATTTTCTACGGGGG 59.178 52.381 0.00 0.00 44.96 5.40
862 926 0.106519 AAAAGGGAGGATGCGGGATG 60.107 55.000 0.00 0.00 0.00 3.51
909 974 2.711542 CTAAAACCCTGGACGAGCAAT 58.288 47.619 0.00 0.00 0.00 3.56
966 1031 1.237954 TGTCGCTCGCTTCTCTCTGT 61.238 55.000 0.00 0.00 0.00 3.41
1065 1130 1.217916 TCTCACCTGGGGTTTTGACA 58.782 50.000 0.00 0.00 31.02 3.58
1086 1151 2.671070 CACCCCTGGAGAACGCAT 59.329 61.111 0.00 0.00 0.00 4.73
1098 1163 0.613012 AATCTGCCAGAAAGCACCCC 60.613 55.000 0.00 0.00 38.00 4.95
1296 1361 1.001393 GCCAATGGTTCGGGAAGGA 60.001 57.895 0.00 0.00 0.00 3.36
1327 1392 7.596749 AACGAAGATGAAACTACAATAGTGG 57.403 36.000 0.00 0.00 39.39 4.00
1487 1593 7.976135 AATAGATCACTACCAGAATTGATGC 57.024 36.000 0.00 0.00 0.00 3.91
1603 1712 4.446857 TCAGTTTTGCGTTCGAACTAAG 57.553 40.909 24.80 11.54 32.69 2.18
1724 1836 8.971321 CAACTATATCCAATGTTGCAATTAAGC 58.029 33.333 0.59 0.00 34.38 3.09
1757 1869 0.677731 TGCTAGGCTGCAATGGTGAC 60.678 55.000 8.79 0.00 40.29 3.67
1770 1882 6.515272 ACAACCAAGATTGTTTATGCTAGG 57.485 37.500 0.00 0.00 39.86 3.02
1772 1884 7.973388 GCATTACAACCAAGATTGTTTATGCTA 59.027 33.333 19.96 0.00 44.99 3.49
1787 1899 3.890147 ACGGTTTTTAGGCATTACAACCA 59.110 39.130 6.29 0.00 0.00 3.67
1852 1964 9.739276 CTGCCCTCTAATAAACCATAATATCAA 57.261 33.333 0.00 0.00 0.00 2.57
1853 1965 8.328758 CCTGCCCTCTAATAAACCATAATATCA 58.671 37.037 0.00 0.00 0.00 2.15
1855 1967 7.119387 GCCTGCCCTCTAATAAACCATAATAT 58.881 38.462 0.00 0.00 0.00 1.28
1856 1968 6.481643 GCCTGCCCTCTAATAAACCATAATA 58.518 40.000 0.00 0.00 0.00 0.98
1857 1969 5.325239 GCCTGCCCTCTAATAAACCATAAT 58.675 41.667 0.00 0.00 0.00 1.28
1858 1970 4.447180 GGCCTGCCCTCTAATAAACCATAA 60.447 45.833 0.00 0.00 0.00 1.90
1859 1971 3.073946 GGCCTGCCCTCTAATAAACCATA 59.926 47.826 0.00 0.00 0.00 2.74
1860 1972 2.158460 GGCCTGCCCTCTAATAAACCAT 60.158 50.000 0.00 0.00 0.00 3.55
1861 1973 1.214424 GGCCTGCCCTCTAATAAACCA 59.786 52.381 0.00 0.00 0.00 3.67
1862 1974 1.495148 AGGCCTGCCCTCTAATAAACC 59.505 52.381 3.11 0.00 41.21 3.27
1863 1975 2.576615 CAGGCCTGCCCTCTAATAAAC 58.423 52.381 22.33 0.00 44.09 2.01
1864 1976 1.494721 CCAGGCCTGCCCTCTAATAAA 59.505 52.381 28.39 0.00 44.09 1.40
1865 1977 1.140312 CCAGGCCTGCCCTCTAATAA 58.860 55.000 28.39 0.00 44.09 1.40
1866 1978 1.418908 GCCAGGCCTGCCCTCTAATA 61.419 60.000 28.39 0.00 44.09 0.98
1867 1979 2.761465 GCCAGGCCTGCCCTCTAAT 61.761 63.158 28.39 0.00 44.09 1.73
1868 1980 3.411517 GCCAGGCCTGCCCTCTAA 61.412 66.667 28.39 0.00 44.09 2.10
1880 1992 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
1881 1993 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
1882 1994 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
1883 1995 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
1884 1996 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
1885 1997 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
1886 1998 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
1892 2004 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
1893 2005 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
1894 2006 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
1895 2007 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
1896 2008 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
1897 2009 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
1898 2010 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
1909 2021 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
1910 2022 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
1911 2023 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
1912 2024 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
1913 2025 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
1914 2026 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
1915 2027 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
1916 2028 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
1917 2029 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
1918 2030 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
1927 2039 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
1928 2040 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
1929 2041 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
1930 2042 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
1931 2043 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
1932 2044 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
1933 2045 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
1934 2046 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
1936 2048 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
1937 2049 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
1938 2050 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
1939 2051 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
1950 2062 0.523519 GTCTTAGCCCTGCAAAGTGC 59.476 55.000 0.00 0.00 45.29 4.40
1951 2063 2.191128 AGTCTTAGCCCTGCAAAGTG 57.809 50.000 0.00 0.00 0.00 3.16
1952 2064 2.237392 CCTAGTCTTAGCCCTGCAAAGT 59.763 50.000 0.00 0.00 0.00 2.66
1953 2065 2.237392 ACCTAGTCTTAGCCCTGCAAAG 59.763 50.000 0.00 0.00 0.00 2.77
1954 2066 2.266279 ACCTAGTCTTAGCCCTGCAAA 58.734 47.619 0.00 0.00 0.00 3.68
1955 2067 1.952621 ACCTAGTCTTAGCCCTGCAA 58.047 50.000 0.00 0.00 0.00 4.08
1956 2068 1.831736 GAACCTAGTCTTAGCCCTGCA 59.168 52.381 0.00 0.00 0.00 4.41
1957 2069 1.139256 GGAACCTAGTCTTAGCCCTGC 59.861 57.143 0.00 0.00 0.00 4.85
1958 2070 2.753247 AGGAACCTAGTCTTAGCCCTG 58.247 52.381 0.00 0.00 0.00 4.45
1959 2071 4.836255 ATAGGAACCTAGTCTTAGCCCT 57.164 45.455 6.72 0.00 31.45 5.19
1960 2072 6.154877 GGATTATAGGAACCTAGTCTTAGCCC 59.845 46.154 6.72 0.00 31.45 5.19
1961 2073 6.154877 GGGATTATAGGAACCTAGTCTTAGCC 59.845 46.154 6.72 2.70 31.45 3.93
1962 2074 6.955267 AGGGATTATAGGAACCTAGTCTTAGC 59.045 42.308 6.72 0.00 31.45 3.09
1963 2075 7.616542 GGAGGGATTATAGGAACCTAGTCTTAG 59.383 44.444 6.72 0.00 31.45 2.18
1964 2076 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
1965 2077 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
1966 2078 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
1967 2079 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
1968 2080 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
1969 2081 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
1970 2082 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
1971 2083 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
1972 2084 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
1973 2085 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
1974 2086 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
1975 2087 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
1976 2088 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
1977 2089 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
1978 2090 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
1979 2091 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
1980 2092 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
1981 2093 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
1982 2094 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
1983 2095 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
1985 2097 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
1986 2098 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
1987 2099 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
1988 2100 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
1989 2101 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
1990 2102 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
1991 2103 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
1999 2111 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
2000 2112 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
2001 2113 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
2002 2114 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
2003 2115 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
2004 2116 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
2005 2117 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
2006 2118 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
2007 2119 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
2008 2120 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
2009 2121 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
2010 2122 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
2011 2123 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
2012 2124 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
2013 2125 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
2014 2126 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
2015 2127 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
2016 2128 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
2017 2129 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
2018 2130 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
2019 2131 0.550914 AAAAGGACAGACCCAGTGCA 59.449 50.000 0.00 0.00 40.05 4.57
2020 2132 0.954452 CAAAAGGACAGACCCAGTGC 59.046 55.000 0.00 0.00 40.05 4.40
2021 2133 2.638480 TCAAAAGGACAGACCCAGTG 57.362 50.000 0.00 0.00 40.05 3.66
2022 2134 5.520748 AATATCAAAAGGACAGACCCAGT 57.479 39.130 0.00 0.00 40.05 4.00
2023 2135 6.488006 CCATAATATCAAAAGGACAGACCCAG 59.512 42.308 0.00 0.00 40.05 4.45
2024 2136 6.069088 ACCATAATATCAAAAGGACAGACCCA 60.069 38.462 0.00 0.00 40.05 4.51
2025 2137 6.365520 ACCATAATATCAAAAGGACAGACCC 58.634 40.000 0.00 0.00 40.05 4.46
2026 2138 7.881775 AACCATAATATCAAAAGGACAGACC 57.118 36.000 0.00 0.00 39.35 3.85
2081 2195 7.010275 CCTTTACTCGTTCTATTTAAGCTCACC 59.990 40.741 0.00 0.00 0.00 4.02
2095 2209 4.374399 TCCACTTGTTCCTTTACTCGTTC 58.626 43.478 0.00 0.00 0.00 3.95
2106 2220 0.954452 CCAGCAACTCCACTTGTTCC 59.046 55.000 0.00 0.00 0.00 3.62
2118 2232 4.783764 ATTTAAACTACCAGCCAGCAAC 57.216 40.909 0.00 0.00 0.00 4.17
2126 2240 7.448748 ACAGTGGCTTTATTTAAACTACCAG 57.551 36.000 0.00 0.00 0.00 4.00
2130 2244 8.697292 ACCAAAACAGTGGCTTTATTTAAACTA 58.303 29.630 0.00 0.00 43.00 2.24
2143 2257 1.234821 TCATCGACCAAAACAGTGGC 58.765 50.000 0.00 0.00 43.00 5.01
2145 2259 5.362556 AGATTTCATCGACCAAAACAGTG 57.637 39.130 0.00 0.00 0.00 3.66
2154 2268 5.334414 GCATACAATGGAGATTTCATCGACC 60.334 44.000 0.00 0.00 0.00 4.79
2157 2271 5.936686 AGCATACAATGGAGATTTCATCG 57.063 39.130 0.00 0.00 0.00 3.84
2308 2425 8.677148 ACAAGTCAGACAAATATTGTTACAGT 57.323 30.769 2.66 0.00 45.52 3.55
2325 2442 7.106439 AGATGAGGTATCTACAACAAGTCAG 57.894 40.000 0.00 0.00 44.32 3.51
2459 2576 4.214545 CGATAACCCAGCAGTTACAACAAA 59.785 41.667 0.00 0.00 35.14 2.83
2540 2658 6.238842 CCTTCTTCACAATCTTTTGCTCTTCA 60.239 38.462 0.00 0.00 36.22 3.02
2698 2816 5.871396 ATGGACGGAAATCTCTAGCTTAA 57.129 39.130 0.00 0.00 0.00 1.85
2699 2817 5.871396 AATGGACGGAAATCTCTAGCTTA 57.129 39.130 0.00 0.00 0.00 3.09
2700 2818 4.762289 AATGGACGGAAATCTCTAGCTT 57.238 40.909 0.00 0.00 0.00 3.74
2730 2848 0.644380 AGATCCAGATCCACCCCTCA 59.356 55.000 4.01 0.00 38.58 3.86
2731 2849 1.347062 GAGATCCAGATCCACCCCTC 58.653 60.000 4.01 0.00 38.58 4.30
2732 2850 0.644380 TGAGATCCAGATCCACCCCT 59.356 55.000 4.01 0.00 38.58 4.79
2733 2851 1.739750 ATGAGATCCAGATCCACCCC 58.260 55.000 4.01 0.00 38.58 4.95
2767 2885 3.606346 GTCAAACCGTCAAACACAAAGTG 59.394 43.478 0.00 0.00 39.75 3.16
2839 2957 1.160137 GCTTGCAGTCGAAATCCACT 58.840 50.000 0.00 0.00 0.00 4.00
2877 2995 4.499399 CGCTGCATCAAGAATCTTCAAATG 59.501 41.667 0.00 0.00 0.00 2.32
2905 3023 8.856153 TGTAGGTTTTGAATAGTAAATGAGCA 57.144 30.769 0.00 0.00 0.00 4.26
2909 3027 7.065324 TCGGCTGTAGGTTTTGAATAGTAAATG 59.935 37.037 0.00 0.00 0.00 2.32
2914 3032 4.020485 ACTCGGCTGTAGGTTTTGAATAGT 60.020 41.667 0.00 0.00 0.00 2.12
2931 3049 1.661112 GTTCAAGCAGATGTACTCGGC 59.339 52.381 8.58 8.58 44.43 5.54
2949 3067 3.502191 AAACAATCGTGTGTTGCTGTT 57.498 38.095 7.14 0.00 40.86 3.16
2970 3088 3.014623 TCGATGGACTAGACACACGAAT 58.985 45.455 0.00 0.00 31.08 3.34
2973 3091 1.738350 ACTCGATGGACTAGACACACG 59.262 52.381 0.00 5.66 0.00 4.49
2979 3097 1.409802 GGGGTCACTCGATGGACTAGA 60.410 57.143 14.06 0.00 34.49 2.43
2982 3100 0.629596 TAGGGGTCACTCGATGGACT 59.370 55.000 14.06 0.99 34.49 3.85
2994 3112 7.054124 TCTGTTTCATGACAAATATAGGGGTC 58.946 38.462 0.00 0.00 0.00 4.46
3025 3143 2.954318 GCCGACACCCTAGTTACATAGA 59.046 50.000 0.00 0.00 0.00 1.98
3031 3149 1.203052 CTTTCGCCGACACCCTAGTTA 59.797 52.381 0.00 0.00 0.00 2.24
3037 3155 1.737008 GAGACTTTCGCCGACACCC 60.737 63.158 0.00 0.00 0.00 4.61
3079 3201 3.733960 GGGAGAAAACGTGCCGGC 61.734 66.667 22.73 22.73 0.00 6.13
3137 3259 5.584253 TGATACCTACTCTCAAGCAGTTC 57.416 43.478 0.00 0.00 0.00 3.01
3172 3302 4.338400 AGTCTATACATGTCAACTGCGCTA 59.662 41.667 9.73 0.00 0.00 4.26
3173 3303 3.131223 AGTCTATACATGTCAACTGCGCT 59.869 43.478 9.73 0.00 0.00 5.92
3174 3304 3.448686 AGTCTATACATGTCAACTGCGC 58.551 45.455 0.00 0.00 0.00 6.09
3175 3305 5.102313 TGAAGTCTATACATGTCAACTGCG 58.898 41.667 0.00 0.00 0.00 5.18
3176 3306 6.591834 ACTTGAAGTCTATACATGTCAACTGC 59.408 38.462 0.00 1.26 0.00 4.40
3177 3307 9.077674 GTACTTGAAGTCTATACATGTCAACTG 57.922 37.037 0.00 0.00 0.00 3.16
3178 3308 8.251721 GGTACTTGAAGTCTATACATGTCAACT 58.748 37.037 0.00 0.00 0.00 3.16
3179 3309 8.251721 AGGTACTTGAAGTCTATACATGTCAAC 58.748 37.037 0.00 0.00 27.25 3.18
3180 3310 8.362464 AGGTACTTGAAGTCTATACATGTCAA 57.638 34.615 0.00 0.00 27.25 3.18
3181 3311 7.834681 AGAGGTACTTGAAGTCTATACATGTCA 59.165 37.037 0.00 0.00 41.55 3.58
3182 3312 8.228035 AGAGGTACTTGAAGTCTATACATGTC 57.772 38.462 0.00 0.00 41.55 3.06
3183 3313 8.596781 AAGAGGTACTTGAAGTCTATACATGT 57.403 34.615 0.00 2.69 41.55 3.21
3184 3314 8.908903 AGAAGAGGTACTTGAAGTCTATACATG 58.091 37.037 0.00 0.00 41.55 3.21
3185 3315 9.127277 GAGAAGAGGTACTTGAAGTCTATACAT 57.873 37.037 0.00 0.00 41.55 2.29
3186 3316 8.330247 AGAGAAGAGGTACTTGAAGTCTATACA 58.670 37.037 0.00 0.00 41.55 2.29
3187 3317 8.617809 CAGAGAAGAGGTACTTGAAGTCTATAC 58.382 40.741 0.00 0.00 41.55 1.47
3195 3328 2.567615 GGCCAGAGAAGAGGTACTTGAA 59.432 50.000 0.00 0.00 41.55 2.69
3202 3335 1.254284 CGAGTGGCCAGAGAAGAGGT 61.254 60.000 5.11 0.00 0.00 3.85
3204 3337 0.967887 TCCGAGTGGCCAGAGAAGAG 60.968 60.000 5.11 0.00 34.14 2.85
3207 3340 0.832135 ACTTCCGAGTGGCCAGAGAA 60.832 55.000 5.11 6.07 33.99 2.87
3208 3341 1.228894 ACTTCCGAGTGGCCAGAGA 60.229 57.895 5.11 0.00 33.99 3.10
3251 3388 3.003394 TCACCTGTCATGGCAATAAGG 57.997 47.619 0.00 1.01 0.00 2.69
3272 3409 3.639561 GGTATGGTTGGGTCACAGTTTTT 59.360 43.478 0.00 0.00 0.00 1.94
3274 3411 2.445525 AGGTATGGTTGGGTCACAGTTT 59.554 45.455 0.00 0.00 0.00 2.66
3275 3412 2.039879 GAGGTATGGTTGGGTCACAGTT 59.960 50.000 0.00 0.00 0.00 3.16
3276 3413 1.628846 GAGGTATGGTTGGGTCACAGT 59.371 52.381 0.00 0.00 0.00 3.55
3278 3415 2.038863 AGAGGTATGGTTGGGTCACA 57.961 50.000 0.00 0.00 0.00 3.58
3281 3431 4.704965 GATACAAGAGGTATGGTTGGGTC 58.295 47.826 0.00 0.00 42.76 4.46
3287 3437 2.963782 GGACCGATACAAGAGGTATGGT 59.036 50.000 0.00 0.00 42.76 3.55
3298 3448 5.834460 ACCCATATGTATAGGACCGATACA 58.166 41.667 24.35 24.35 42.43 2.29
3299 3449 6.379133 TCAACCCATATGTATAGGACCGATAC 59.621 42.308 15.74 15.74 0.00 2.24
3302 3452 4.525487 GTCAACCCATATGTATAGGACCGA 59.475 45.833 1.24 0.00 0.00 4.69
3303 3453 4.322499 GGTCAACCCATATGTATAGGACCG 60.322 50.000 12.22 0.00 33.74 4.79
3305 3455 4.322499 CCGGTCAACCCATATGTATAGGAC 60.322 50.000 1.24 3.10 0.00 3.85
3308 3458 3.007506 TGCCGGTCAACCCATATGTATAG 59.992 47.826 1.90 0.00 0.00 1.31
3309 3459 2.973406 TGCCGGTCAACCCATATGTATA 59.027 45.455 1.90 0.00 0.00 1.47
3313 3463 1.447317 GCTGCCGGTCAACCCATATG 61.447 60.000 1.90 0.00 0.00 1.78
3314 3464 1.152963 GCTGCCGGTCAACCCATAT 60.153 57.895 1.90 0.00 0.00 1.78
3316 3466 4.740822 GGCTGCCGGTCAACCCAT 62.741 66.667 1.35 0.00 0.00 4.00
3320 3470 2.180159 TAAGAGGGCTGCCGGTCAAC 62.180 60.000 18.62 2.74 0.00 3.18
3321 3471 1.916273 TAAGAGGGCTGCCGGTCAA 60.916 57.895 18.62 6.56 0.00 3.18
3322 3472 2.284331 TAAGAGGGCTGCCGGTCA 60.284 61.111 18.62 0.00 0.00 4.02
3323 3473 2.187163 GTAAGAGGGCTGCCGGTC 59.813 66.667 13.40 11.92 0.00 4.79
3324 3474 3.400054 GGTAAGAGGGCTGCCGGT 61.400 66.667 13.40 1.57 0.00 5.28
3325 3475 4.176752 GGGTAAGAGGGCTGCCGG 62.177 72.222 13.40 0.00 0.00 6.13
3326 3476 4.530857 CGGGTAAGAGGGCTGCCG 62.531 72.222 13.40 0.00 0.00 5.69
3328 3478 4.858680 GCCGGGTAAGAGGGCTGC 62.859 72.222 2.18 0.00 43.52 5.25
3332 3482 2.500504 GGATATAAGCCGGGTAAGAGGG 59.499 54.545 6.57 0.00 0.00 4.30
3333 3483 3.195825 CAGGATATAAGCCGGGTAAGAGG 59.804 52.174 6.57 0.00 0.00 3.69
3334 3484 3.195825 CCAGGATATAAGCCGGGTAAGAG 59.804 52.174 6.57 0.00 36.20 2.85
3335 3485 3.170717 CCAGGATATAAGCCGGGTAAGA 58.829 50.000 6.57 0.00 36.20 2.10
3336 3486 2.236395 CCCAGGATATAAGCCGGGTAAG 59.764 54.545 6.57 0.00 38.87 2.34
3337 3487 2.262637 CCCAGGATATAAGCCGGGTAA 58.737 52.381 6.57 0.00 38.87 2.85
3338 3488 1.946984 CCCAGGATATAAGCCGGGTA 58.053 55.000 6.57 0.00 38.87 3.69
3339 3489 1.489560 GCCCAGGATATAAGCCGGGT 61.490 60.000 0.00 0.00 38.87 5.28
3340 3490 1.299976 GCCCAGGATATAAGCCGGG 59.700 63.158 2.18 14.81 40.18 5.73
3341 3491 1.079127 CGCCCAGGATATAAGCCGG 60.079 63.158 0.00 0.00 0.00 6.13
3342 3492 0.389948 GTCGCCCAGGATATAAGCCG 60.390 60.000 0.00 0.00 0.00 5.52
3343 3493 0.036294 GGTCGCCCAGGATATAAGCC 60.036 60.000 0.00 0.00 0.00 4.35
3344 3494 0.977395 AGGTCGCCCAGGATATAAGC 59.023 55.000 0.00 0.00 0.00 3.09
3345 3495 2.494073 GAGAGGTCGCCCAGGATATAAG 59.506 54.545 0.00 0.00 0.00 1.73
3346 3496 2.526432 GAGAGGTCGCCCAGGATATAA 58.474 52.381 0.00 0.00 0.00 0.98
3347 3497 1.613520 CGAGAGGTCGCCCAGGATATA 60.614 57.143 0.00 0.00 39.88 0.86
3348 3498 0.896019 CGAGAGGTCGCCCAGGATAT 60.896 60.000 0.00 0.00 39.88 1.63
3349 3499 1.528542 CGAGAGGTCGCCCAGGATA 60.529 63.158 0.00 0.00 39.88 2.59
3350 3500 2.835431 CGAGAGGTCGCCCAGGAT 60.835 66.667 0.00 0.00 39.88 3.24
3360 3510 3.326006 TGTATAGGACCGATACGAGAGGT 59.674 47.826 17.00 0.00 41.63 3.85
3361 3511 3.935315 TGTATAGGACCGATACGAGAGG 58.065 50.000 17.00 0.00 33.27 3.69
3362 3512 6.203145 CCATATGTATAGGACCGATACGAGAG 59.797 46.154 17.00 9.13 33.27 3.20
3363 3513 6.053650 CCATATGTATAGGACCGATACGAGA 58.946 44.000 17.00 7.57 33.27 4.04
3364 3514 5.238868 CCCATATGTATAGGACCGATACGAG 59.761 48.000 17.00 8.59 33.27 4.18
3365 3515 5.128205 CCCATATGTATAGGACCGATACGA 58.872 45.833 17.00 9.89 33.27 3.43
3366 3516 4.885907 ACCCATATGTATAGGACCGATACG 59.114 45.833 17.00 6.82 33.27 3.06
3367 3517 6.379133 TCAACCCATATGTATAGGACCGATAC 59.621 42.308 15.74 15.74 0.00 2.24
3368 3518 6.379133 GTCAACCCATATGTATAGGACCGATA 59.621 42.308 1.24 0.00 0.00 2.92
3369 3519 5.187186 GTCAACCCATATGTATAGGACCGAT 59.813 44.000 1.24 0.00 0.00 4.18
3370 3520 4.525487 GTCAACCCATATGTATAGGACCGA 59.475 45.833 1.24 0.00 0.00 4.69
3371 3521 4.322499 GGTCAACCCATATGTATAGGACCG 60.322 50.000 12.22 0.00 33.74 4.79
3372 3522 4.322499 CGGTCAACCCATATGTATAGGACC 60.322 50.000 15.41 15.41 39.05 4.46
3373 3523 4.322499 CCGGTCAACCCATATGTATAGGAC 60.322 50.000 1.24 3.10 0.00 3.85
3374 3524 3.835978 CCGGTCAACCCATATGTATAGGA 59.164 47.826 1.24 0.00 0.00 2.94
3375 3525 3.618997 GCCGGTCAACCCATATGTATAGG 60.619 52.174 1.90 0.00 0.00 2.57
3376 3526 3.007506 TGCCGGTCAACCCATATGTATAG 59.992 47.826 1.90 0.00 0.00 1.31
3377 3527 2.973406 TGCCGGTCAACCCATATGTATA 59.027 45.455 1.90 0.00 0.00 1.47
3378 3528 1.771854 TGCCGGTCAACCCATATGTAT 59.228 47.619 1.90 0.00 0.00 2.29
3379 3529 1.134340 GTGCCGGTCAACCCATATGTA 60.134 52.381 1.90 0.00 0.00 2.29
3380 3530 0.393808 GTGCCGGTCAACCCATATGT 60.394 55.000 1.90 0.00 0.00 2.29
3381 3531 1.101049 GGTGCCGGTCAACCCATATG 61.101 60.000 1.90 0.00 0.00 1.78
3382 3532 1.226262 GGTGCCGGTCAACCCATAT 59.774 57.895 1.90 0.00 0.00 1.78
3383 3533 2.672295 GGTGCCGGTCAACCCATA 59.328 61.111 1.90 0.00 0.00 2.74
3388 3538 1.833787 TAAGAGGGGTGCCGGTCAAC 61.834 60.000 1.90 4.06 0.00 3.18
3389 3539 1.536907 TAAGAGGGGTGCCGGTCAA 60.537 57.895 1.90 0.00 0.00 3.18
3390 3540 2.120940 TAAGAGGGGTGCCGGTCA 59.879 61.111 1.90 0.00 0.00 4.02
3391 3541 2.582978 GTAAGAGGGGTGCCGGTC 59.417 66.667 1.90 0.00 0.00 4.79
3392 3542 3.007323 GGTAAGAGGGGTGCCGGT 61.007 66.667 1.90 0.00 0.00 5.28
3393 3543 3.793888 GGGTAAGAGGGGTGCCGG 61.794 72.222 0.00 0.00 0.00 6.13
3394 3544 4.157120 CGGGTAAGAGGGGTGCCG 62.157 72.222 0.00 0.00 0.00 5.69
3395 3545 3.793888 CCGGGTAAGAGGGGTGCC 61.794 72.222 0.00 0.00 0.00 5.01
3396 3546 4.484872 GCCGGGTAAGAGGGGTGC 62.485 72.222 2.18 0.00 0.00 5.01
3397 3547 0.979187 TAAGCCGGGTAAGAGGGGTG 60.979 60.000 6.57 0.00 0.00 4.61
3398 3548 0.030399 ATAAGCCGGGTAAGAGGGGT 60.030 55.000 6.57 0.00 0.00 4.95
3399 3549 2.019807 TATAAGCCGGGTAAGAGGGG 57.980 55.000 6.57 0.00 0.00 4.79
3400 3550 2.500504 GGATATAAGCCGGGTAAGAGGG 59.499 54.545 6.57 0.00 0.00 4.30
3401 3551 3.195825 CAGGATATAAGCCGGGTAAGAGG 59.804 52.174 6.57 0.00 0.00 3.69
3402 3552 3.195825 CCAGGATATAAGCCGGGTAAGAG 59.804 52.174 6.57 0.00 36.20 2.85
3403 3553 3.170717 CCAGGATATAAGCCGGGTAAGA 58.829 50.000 6.57 0.00 36.20 2.10
3404 3554 2.236395 CCCAGGATATAAGCCGGGTAAG 59.764 54.545 6.57 0.00 38.87 2.34
3405 3555 2.262637 CCCAGGATATAAGCCGGGTAA 58.737 52.381 6.57 0.00 38.87 2.85
3406 3556 1.946984 CCCAGGATATAAGCCGGGTA 58.053 55.000 6.57 0.00 38.87 3.69
3407 3557 1.489560 GCCCAGGATATAAGCCGGGT 61.490 60.000 0.00 0.00 38.87 5.28
3408 3558 1.299976 GCCCAGGATATAAGCCGGG 59.700 63.158 2.18 14.81 40.18 5.73
3409 3559 1.079127 CGCCCAGGATATAAGCCGG 60.079 63.158 0.00 0.00 0.00 6.13
3410 3560 0.537188 ATCGCCCAGGATATAAGCCG 59.463 55.000 0.00 0.00 0.00 5.52
3411 3561 2.290323 ACAATCGCCCAGGATATAAGCC 60.290 50.000 0.00 0.00 0.00 4.35
3412 3562 2.744202 CACAATCGCCCAGGATATAAGC 59.256 50.000 0.00 0.00 0.00 3.09
3413 3563 3.338249 CCACAATCGCCCAGGATATAAG 58.662 50.000 0.00 0.00 0.00 1.73
3414 3564 2.039746 CCCACAATCGCCCAGGATATAA 59.960 50.000 0.00 0.00 0.00 0.98
3415 3565 1.628340 CCCACAATCGCCCAGGATATA 59.372 52.381 0.00 0.00 0.00 0.86
3416 3566 0.401738 CCCACAATCGCCCAGGATAT 59.598 55.000 0.00 0.00 0.00 1.63
3417 3567 1.705002 CCCCACAATCGCCCAGGATA 61.705 60.000 0.00 0.00 0.00 2.59
3418 3568 2.597340 CCCACAATCGCCCAGGAT 59.403 61.111 0.00 0.00 0.00 3.24
3419 3569 3.727258 CCCCACAATCGCCCAGGA 61.727 66.667 0.00 0.00 0.00 3.86
3420 3570 3.704231 CTCCCCACAATCGCCCAGG 62.704 68.421 0.00 0.00 0.00 4.45
3421 3571 2.124570 CTCCCCACAATCGCCCAG 60.125 66.667 0.00 0.00 0.00 4.45
3422 3572 3.727258 CCTCCCCACAATCGCCCA 61.727 66.667 0.00 0.00 0.00 5.36
3425 3575 2.666596 CTAGGCCTCCCCACAATCGC 62.667 65.000 9.68 0.00 35.39 4.58
3426 3576 1.048724 TCTAGGCCTCCCCACAATCG 61.049 60.000 9.68 0.00 35.39 3.34
3427 3577 1.349357 GATCTAGGCCTCCCCACAATC 59.651 57.143 9.68 0.00 35.39 2.67
3428 3578 1.061033 AGATCTAGGCCTCCCCACAAT 60.061 52.381 9.68 0.00 35.39 2.71
3429 3579 0.343372 AGATCTAGGCCTCCCCACAA 59.657 55.000 9.68 0.00 35.39 3.33
3430 3580 0.399091 CAGATCTAGGCCTCCCCACA 60.399 60.000 9.68 0.00 35.39 4.17
3431 3581 0.399233 ACAGATCTAGGCCTCCCCAC 60.399 60.000 9.68 0.00 35.39 4.61
3432 3582 0.105453 GACAGATCTAGGCCTCCCCA 60.105 60.000 9.68 0.00 35.39 4.96
3435 3585 1.811645 GCGGACAGATCTAGGCCTCC 61.812 65.000 9.68 0.00 0.00 4.30
3446 3596 1.412710 GGATCTAACATGGCGGACAGA 59.587 52.381 0.00 0.00 0.00 3.41
3447 3597 1.869754 CGGATCTAACATGGCGGACAG 60.870 57.143 0.00 0.00 0.00 3.51
3451 3601 0.600255 GGTCGGATCTAACATGGCGG 60.600 60.000 0.00 0.00 0.00 6.13
3452 3602 0.104120 TGGTCGGATCTAACATGGCG 59.896 55.000 0.00 0.00 0.00 5.69
3502 3653 1.701292 TCTGGATGTGGATAGCATGGG 59.299 52.381 0.00 0.00 0.00 4.00
3514 3665 1.755380 GCTAGGGTTACGTCTGGATGT 59.245 52.381 0.00 1.04 0.00 3.06
3570 3721 2.685380 AGCTGGGGAAGGACGGAG 60.685 66.667 0.00 0.00 0.00 4.63
3573 3724 1.219393 GAAGAGCTGGGGAAGGACG 59.781 63.158 0.00 0.00 0.00 4.79
3585 3736 1.948635 GAGATCGCCGCAGAAGAGC 60.949 63.158 0.00 0.00 0.00 4.09
3589 3740 2.496341 CCAGAGATCGCCGCAGAA 59.504 61.111 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.