Multiple sequence alignment - TraesCS2D01G323500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G323500 chr2D 100.000 6590 0 0 1 6590 416407048 416400459 0.000000e+00 12170.0
1 TraesCS2D01G323500 chr2D 95.668 277 11 1 4 280 416550455 416550180 1.690000e-120 444.0
2 TraesCS2D01G323500 chr2D 81.519 395 70 3 2250 2642 67202241 67201848 8.240000e-84 322.0
3 TraesCS2D01G323500 chr2A 92.998 2185 101 19 3908 6072 582639964 582637812 0.000000e+00 3140.0
4 TraesCS2D01G323500 chr2A 94.790 1996 70 19 281 2250 582643310 582641323 0.000000e+00 3079.0
5 TraesCS2D01G323500 chr2A 96.184 1284 36 8 2639 3911 582641325 582640044 0.000000e+00 2087.0
6 TraesCS2D01G323500 chr2B 97.860 1776 33 4 3316 5086 488201124 488199349 0.000000e+00 3064.0
7 TraesCS2D01G323500 chr2B 93.750 2080 64 15 833 2898 488204762 488202735 0.000000e+00 3061.0
8 TraesCS2D01G323500 chr2B 94.147 1008 26 11 5085 6072 488199267 488198273 0.000000e+00 1504.0
9 TraesCS2D01G323500 chr2B 95.781 237 10 0 2948 3184 488202734 488202498 3.730000e-102 383.0
10 TraesCS2D01G323500 chr2B 89.500 200 16 3 281 475 488205505 488205306 1.420000e-61 248.0
11 TraesCS2D01G323500 chr2B 91.603 131 9 2 693 822 488204966 488204837 5.250000e-41 180.0
12 TraesCS2D01G323500 chr1D 96.033 479 17 2 6064 6540 490327599 490327121 0.000000e+00 778.0
13 TraesCS2D01G323500 chr1D 91.496 341 27 2 2300 2639 250068027 250068366 1.000000e-127 468.0
14 TraesCS2D01G323500 chr1D 76.709 395 71 15 2250 2639 399177611 399177233 4.030000e-47 200.0
15 TraesCS2D01G323500 chr1D 93.548 62 4 0 2247 2308 250048713 250048774 7.040000e-15 93.5
16 TraesCS2D01G323500 chr1D 98.077 52 1 0 6539 6590 490325675 490325624 2.530000e-14 91.6
17 TraesCS2D01G323500 chr5D 95.767 378 11 4 2254 2629 495306453 495306827 7.310000e-169 604.0
18 TraesCS2D01G323500 chr5D 86.127 519 54 6 6073 6590 231224265 231224766 1.620000e-150 544.0
19 TraesCS2D01G323500 chr5D 90.541 296 25 2 3116 3409 137055049 137055343 8.010000e-104 388.0
20 TraesCS2D01G323500 chr7D 83.134 670 69 29 2768 3409 376066050 376066703 7.410000e-159 571.0
21 TraesCS2D01G323500 chr7D 89.610 385 32 6 3025 3407 533907071 533906693 3.570000e-132 483.0
22 TraesCS2D01G323500 chr7D 94.052 269 11 3 16 282 491346320 491346055 2.860000e-108 403.0
23 TraesCS2D01G323500 chr7D 94.007 267 14 2 16 280 491762870 491762604 2.860000e-108 403.0
24 TraesCS2D01G323500 chr7D 92.647 272 18 2 16 285 196448869 196448598 2.230000e-104 390.0
25 TraesCS2D01G323500 chr7A 86.081 546 51 19 2876 3409 422653494 422654026 1.240000e-156 564.0
26 TraesCS2D01G323500 chr7A 89.730 370 30 6 3040 3407 613634478 613634115 3.600000e-127 466.0
27 TraesCS2D01G323500 chr7A 93.863 277 17 0 4 280 434918509 434918233 1.020000e-112 418.0
28 TraesCS2D01G323500 chr7A 83.149 362 50 5 6235 6590 217231210 217231566 2.960000e-83 320.0
29 TraesCS2D01G323500 chr7B 82.459 667 74 31 2768 3409 371029142 371029790 1.620000e-150 544.0
30 TraesCS2D01G323500 chr7B 90.237 379 29 5 3032 3407 574471908 574471535 7.680000e-134 488.0
31 TraesCS2D01G323500 chr5A 88.976 381 24 13 3045 3408 172465455 172465076 7.790000e-124 455.0
32 TraesCS2D01G323500 chr5A 86.275 102 11 2 3417 3516 172509034 172508934 2.510000e-19 108.0
33 TraesCS2D01G323500 chr3D 94.737 285 12 1 1 282 496720044 496720328 2.180000e-119 440.0
34 TraesCS2D01G323500 chr3D 93.993 283 13 2 1 280 496699571 496699852 6.110000e-115 425.0
35 TraesCS2D01G323500 chr5B 81.801 533 67 14 6073 6590 512434767 512435284 2.840000e-113 420.0
36 TraesCS2D01G323500 chr4B 92.279 272 13 6 17 280 605671396 605671125 4.820000e-101 379.0
37 TraesCS2D01G323500 chr4D 92.193 269 16 4 16 280 448607986 448607719 6.240000e-100 375.0
38 TraesCS2D01G323500 chr3B 79.926 538 71 21 6068 6590 824451559 824452074 1.750000e-95 361.0
39 TraesCS2D01G323500 chr3B 81.061 396 70 5 2247 2639 453509530 453509923 1.780000e-80 311.0
40 TraesCS2D01G323500 chrUn 92.793 222 13 3 2391 2611 132044996 132044777 1.070000e-82 318.0
41 TraesCS2D01G323500 chr6D 85.955 178 24 1 2455 2632 262035379 262035203 8.720000e-44 189.0
42 TraesCS2D01G323500 chr3A 79.923 259 44 7 2379 2632 410103988 410103733 4.060000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G323500 chr2D 416400459 416407048 6589 True 12170.000000 12170 100.000000 1 6590 1 chr2D.!!$R2 6589
1 TraesCS2D01G323500 chr2A 582637812 582643310 5498 True 2768.666667 3140 94.657333 281 6072 3 chr2A.!!$R1 5791
2 TraesCS2D01G323500 chr2B 488198273 488205505 7232 True 1406.666667 3064 93.773500 281 6072 6 chr2B.!!$R1 5791
3 TraesCS2D01G323500 chr1D 490325624 490327599 1975 True 434.800000 778 97.055000 6064 6590 2 chr1D.!!$R2 526
4 TraesCS2D01G323500 chr5D 231224265 231224766 501 False 544.000000 544 86.127000 6073 6590 1 chr5D.!!$F2 517
5 TraesCS2D01G323500 chr7D 376066050 376066703 653 False 571.000000 571 83.134000 2768 3409 1 chr7D.!!$F1 641
6 TraesCS2D01G323500 chr7A 422653494 422654026 532 False 564.000000 564 86.081000 2876 3409 1 chr7A.!!$F2 533
7 TraesCS2D01G323500 chr7B 371029142 371029790 648 False 544.000000 544 82.459000 2768 3409 1 chr7B.!!$F1 641
8 TraesCS2D01G323500 chr5B 512434767 512435284 517 False 420.000000 420 81.801000 6073 6590 1 chr5B.!!$F1 517
9 TraesCS2D01G323500 chr3B 824451559 824452074 515 False 361.000000 361 79.926000 6068 6590 1 chr3B.!!$F2 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
558 578 0.106318 GGGCCGAGAGACTAGGGTTA 60.106 60.000 0.00 0.0 0.00 2.85 F
1193 1389 0.038343 TGCTCGGCCTTTGATTTTGC 60.038 50.000 0.00 0.0 0.00 3.68 F
2836 3052 0.108585 GGGAAAGACTGGCTCACACA 59.891 55.000 0.00 0.0 0.00 3.72 F
2946 3184 1.826096 GTCTCCTTCCTCTACGGCTTT 59.174 52.381 0.00 0.0 0.00 3.51 F
3109 3355 2.100584 AGCAGTGTAGCTAGATGTGCTC 59.899 50.000 19.27 0.0 44.50 4.26 F
3493 4997 2.203877 TGAGGCGGGGGTACAACT 60.204 61.111 0.00 0.0 0.00 3.16 F
5353 7042 0.036590 TGCTAGCTGGCATTGTGTCA 59.963 50.000 22.10 0.0 37.29 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 2570 1.531149 CCAAACACGGCACTGTCTAAG 59.469 52.381 0.00 0.0 0.00 2.18 R
2946 3184 0.252881 AGGAGGAAGGGCACAGATCA 60.253 55.000 0.00 0.0 0.00 2.92 R
4661 6252 2.158900 GCAGGAGCTACAAGCATAGGAA 60.159 50.000 8.39 0.0 45.56 3.36 R
4719 6310 2.435069 CCATCTGCCAGACTTCAGAGAT 59.565 50.000 0.00 0.0 41.95 2.75 R
4786 6377 4.159135 ACCTGCATGATTGGAATTTCTCAC 59.841 41.667 0.00 0.0 0.00 3.51 R
5362 7051 1.126488 CCTTCAGGCCTATGAGAGCA 58.874 55.000 3.98 0.0 0.00 4.26 R
6314 8028 0.263172 ATGACTGGGAGAGGGACGAT 59.737 55.000 0.00 0.0 0.00 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.985730 AAGATTGTTTTAAAGATCATTTGAGCA 57.014 25.926 0.00 0.00 31.88 4.26
30 31 9.985730 AGATTGTTTTAAAGATCATTTGAGCAA 57.014 25.926 0.00 0.00 31.88 3.91
32 33 9.985730 ATTGTTTTAAAGATCATTTGAGCAAGA 57.014 25.926 0.00 0.00 31.88 3.02
33 34 8.801715 TGTTTTAAAGATCATTTGAGCAAGAC 57.198 30.769 0.00 0.00 31.88 3.01
34 35 8.632679 TGTTTTAAAGATCATTTGAGCAAGACT 58.367 29.630 0.00 0.00 31.88 3.24
35 36 9.468532 GTTTTAAAGATCATTTGAGCAAGACTT 57.531 29.630 0.00 0.00 31.88 3.01
37 38 9.683069 TTTAAAGATCATTTGAGCAAGACTTTC 57.317 29.630 0.00 0.00 31.88 2.62
38 39 5.542616 AGATCATTTGAGCAAGACTTTCG 57.457 39.130 0.00 0.00 31.88 3.46
39 40 3.542712 TCATTTGAGCAAGACTTTCGC 57.457 42.857 0.00 0.00 0.00 4.70
40 41 2.096268 TCATTTGAGCAAGACTTTCGCG 60.096 45.455 0.00 0.00 0.00 5.87
41 42 1.577468 TTTGAGCAAGACTTTCGCGA 58.423 45.000 3.71 3.71 0.00 5.87
42 43 1.139989 TTGAGCAAGACTTTCGCGAG 58.860 50.000 9.59 0.27 0.00 5.03
43 44 0.313987 TGAGCAAGACTTTCGCGAGA 59.686 50.000 9.59 3.35 39.20 4.04
44 45 0.711118 GAGCAAGACTTTCGCGAGAC 59.289 55.000 9.59 0.00 41.84 3.36
45 46 0.667792 AGCAAGACTTTCGCGAGACC 60.668 55.000 9.59 0.00 41.84 3.85
46 47 1.627550 GCAAGACTTTCGCGAGACCC 61.628 60.000 9.59 0.40 41.84 4.46
47 48 1.014564 CAAGACTTTCGCGAGACCCC 61.015 60.000 9.59 0.00 41.84 4.95
48 49 1.469335 AAGACTTTCGCGAGACCCCA 61.469 55.000 9.59 0.00 41.84 4.96
49 50 1.218316 GACTTTCGCGAGACCCCAT 59.782 57.895 9.59 0.00 41.84 4.00
50 51 1.079127 ACTTTCGCGAGACCCCATG 60.079 57.895 9.59 0.00 41.84 3.66
51 52 1.079127 CTTTCGCGAGACCCCATGT 60.079 57.895 9.59 0.00 41.84 3.21
52 53 1.079405 TTTCGCGAGACCCCATGTC 60.079 57.895 9.59 0.00 44.82 3.06
53 54 2.515996 TTTCGCGAGACCCCATGTCC 62.516 60.000 9.59 0.00 45.68 4.02
54 55 4.530857 CGCGAGACCCCATGTCCC 62.531 72.222 0.00 0.00 45.68 4.46
55 56 4.176752 GCGAGACCCCATGTCCCC 62.177 72.222 0.00 0.00 45.68 4.81
56 57 3.480133 CGAGACCCCATGTCCCCC 61.480 72.222 0.00 0.00 45.68 5.40
57 58 2.042930 GAGACCCCATGTCCCCCT 59.957 66.667 0.00 0.00 45.68 4.79
58 59 2.042930 AGACCCCATGTCCCCCTC 59.957 66.667 0.00 0.00 45.68 4.30
59 60 2.042930 GACCCCATGTCCCCCTCT 59.957 66.667 0.00 0.00 38.09 3.69
60 61 1.619669 GACCCCATGTCCCCCTCTT 60.620 63.158 0.00 0.00 38.09 2.85
61 62 0.327191 GACCCCATGTCCCCCTCTTA 60.327 60.000 0.00 0.00 38.09 2.10
62 63 0.122435 ACCCCATGTCCCCCTCTTAA 59.878 55.000 0.00 0.00 0.00 1.85
63 64 1.275595 ACCCCATGTCCCCCTCTTAAT 60.276 52.381 0.00 0.00 0.00 1.40
64 65 2.020441 ACCCCATGTCCCCCTCTTAATA 60.020 50.000 0.00 0.00 0.00 0.98
65 66 2.644798 CCCCATGTCCCCCTCTTAATAG 59.355 54.545 0.00 0.00 0.00 1.73
66 67 3.327439 CCCATGTCCCCCTCTTAATAGT 58.673 50.000 0.00 0.00 0.00 2.12
67 68 3.073062 CCCATGTCCCCCTCTTAATAGTG 59.927 52.174 0.00 0.00 0.00 2.74
68 69 3.496870 CCATGTCCCCCTCTTAATAGTGC 60.497 52.174 0.00 0.00 0.00 4.40
69 70 1.760613 TGTCCCCCTCTTAATAGTGCG 59.239 52.381 0.00 0.00 0.00 5.34
70 71 1.070289 GTCCCCCTCTTAATAGTGCGG 59.930 57.143 0.00 0.00 0.00 5.69
71 72 0.396811 CCCCCTCTTAATAGTGCGGG 59.603 60.000 0.00 0.00 0.00 6.13
72 73 1.420430 CCCCTCTTAATAGTGCGGGA 58.580 55.000 0.00 0.00 33.46 5.14
73 74 1.978580 CCCCTCTTAATAGTGCGGGAT 59.021 52.381 0.00 0.00 33.46 3.85
74 75 2.289694 CCCCTCTTAATAGTGCGGGATG 60.290 54.545 0.00 0.00 33.46 3.51
75 76 2.417719 CCTCTTAATAGTGCGGGATGC 58.582 52.381 0.00 0.00 46.70 3.91
76 77 2.417719 CTCTTAATAGTGCGGGATGCC 58.582 52.381 0.00 0.00 45.60 4.40
77 78 2.037772 CTCTTAATAGTGCGGGATGCCT 59.962 50.000 0.28 0.00 45.60 4.75
78 79 3.236047 TCTTAATAGTGCGGGATGCCTA 58.764 45.455 0.28 0.00 45.60 3.93
79 80 3.838317 TCTTAATAGTGCGGGATGCCTAT 59.162 43.478 0.28 0.00 45.60 2.57
80 81 5.020795 TCTTAATAGTGCGGGATGCCTATA 58.979 41.667 0.28 0.00 45.60 1.31
81 82 3.611766 AATAGTGCGGGATGCCTATAC 57.388 47.619 0.28 0.00 45.60 1.47
82 83 2.304221 TAGTGCGGGATGCCTATACT 57.696 50.000 0.28 5.49 45.60 2.12
83 84 0.969894 AGTGCGGGATGCCTATACTC 59.030 55.000 0.28 0.00 45.60 2.59
84 85 0.679505 GTGCGGGATGCCTATACTCA 59.320 55.000 0.28 0.00 45.60 3.41
85 86 1.070134 GTGCGGGATGCCTATACTCAA 59.930 52.381 0.28 0.00 45.60 3.02
86 87 1.344438 TGCGGGATGCCTATACTCAAG 59.656 52.381 0.28 0.00 45.60 3.02
87 88 1.618837 GCGGGATGCCTATACTCAAGA 59.381 52.381 0.28 0.00 37.76 3.02
88 89 2.037251 GCGGGATGCCTATACTCAAGAA 59.963 50.000 0.28 0.00 37.76 2.52
89 90 3.654414 CGGGATGCCTATACTCAAGAAC 58.346 50.000 0.28 0.00 0.00 3.01
90 91 3.069586 CGGGATGCCTATACTCAAGAACA 59.930 47.826 0.28 0.00 0.00 3.18
91 92 4.442893 CGGGATGCCTATACTCAAGAACAA 60.443 45.833 0.28 0.00 0.00 2.83
92 93 5.437060 GGGATGCCTATACTCAAGAACAAA 58.563 41.667 0.00 0.00 0.00 2.83
93 94 5.297029 GGGATGCCTATACTCAAGAACAAAC 59.703 44.000 0.00 0.00 0.00 2.93
94 95 5.880332 GGATGCCTATACTCAAGAACAAACA 59.120 40.000 0.00 0.00 0.00 2.83
95 96 6.374333 GGATGCCTATACTCAAGAACAAACAA 59.626 38.462 0.00 0.00 0.00 2.83
96 97 7.094377 GGATGCCTATACTCAAGAACAAACAAA 60.094 37.037 0.00 0.00 0.00 2.83
97 98 7.575414 TGCCTATACTCAAGAACAAACAAAA 57.425 32.000 0.00 0.00 0.00 2.44
98 99 8.001881 TGCCTATACTCAAGAACAAACAAAAA 57.998 30.769 0.00 0.00 0.00 1.94
99 100 8.134895 TGCCTATACTCAAGAACAAACAAAAAG 58.865 33.333 0.00 0.00 0.00 2.27
100 101 7.595130 GCCTATACTCAAGAACAAACAAAAAGG 59.405 37.037 0.00 0.00 0.00 3.11
101 102 8.082242 CCTATACTCAAGAACAAACAAAAAGGG 58.918 37.037 0.00 0.00 0.00 3.95
102 103 4.503910 ACTCAAGAACAAACAAAAAGGGC 58.496 39.130 0.00 0.00 0.00 5.19
103 104 3.867857 TCAAGAACAAACAAAAAGGGCC 58.132 40.909 0.00 0.00 0.00 5.80
104 105 3.517500 TCAAGAACAAACAAAAAGGGCCT 59.482 39.130 0.00 0.00 0.00 5.19
105 106 4.712337 TCAAGAACAAACAAAAAGGGCCTA 59.288 37.500 6.41 0.00 0.00 3.93
106 107 5.187967 TCAAGAACAAACAAAAAGGGCCTAA 59.812 36.000 6.41 0.00 0.00 2.69
107 108 5.276461 AGAACAAACAAAAAGGGCCTAAG 57.724 39.130 6.41 0.00 0.00 2.18
108 109 3.469008 ACAAACAAAAAGGGCCTAAGC 57.531 42.857 6.41 0.00 38.76 3.09
109 110 3.038280 ACAAACAAAAAGGGCCTAAGCT 58.962 40.909 6.41 0.00 39.73 3.74
110 111 4.219919 ACAAACAAAAAGGGCCTAAGCTA 58.780 39.130 6.41 0.00 39.73 3.32
111 112 4.280929 ACAAACAAAAAGGGCCTAAGCTAG 59.719 41.667 6.41 0.00 39.73 3.42
112 113 3.808834 ACAAAAAGGGCCTAAGCTAGT 57.191 42.857 6.41 0.00 39.73 2.57
113 114 4.921644 ACAAAAAGGGCCTAAGCTAGTA 57.078 40.909 6.41 0.00 39.73 1.82
114 115 4.844884 ACAAAAAGGGCCTAAGCTAGTAG 58.155 43.478 6.41 0.00 39.73 2.57
115 116 4.534897 ACAAAAAGGGCCTAAGCTAGTAGA 59.465 41.667 6.41 0.00 39.73 2.59
116 117 4.757019 AAAAGGGCCTAAGCTAGTAGAC 57.243 45.455 6.41 0.00 39.73 2.59
117 118 3.691698 AAGGGCCTAAGCTAGTAGACT 57.308 47.619 6.41 0.00 39.73 3.24
118 119 3.691698 AGGGCCTAAGCTAGTAGACTT 57.308 47.619 2.82 6.71 39.73 3.01
119 120 3.301274 AGGGCCTAAGCTAGTAGACTTG 58.699 50.000 2.82 6.82 39.73 3.16
120 121 3.032459 GGGCCTAAGCTAGTAGACTTGT 58.968 50.000 0.84 0.00 39.73 3.16
121 122 3.451540 GGGCCTAAGCTAGTAGACTTGTT 59.548 47.826 0.84 0.00 39.73 2.83
122 123 4.081031 GGGCCTAAGCTAGTAGACTTGTTT 60.081 45.833 0.84 0.00 39.73 2.83
123 124 5.110598 GGCCTAAGCTAGTAGACTTGTTTC 58.889 45.833 13.75 4.46 39.73 2.78
124 125 5.105269 GGCCTAAGCTAGTAGACTTGTTTCT 60.105 44.000 13.75 0.00 39.73 2.52
125 126 6.399743 GCCTAAGCTAGTAGACTTGTTTCTT 58.600 40.000 13.75 3.47 35.50 2.52
126 127 6.532302 GCCTAAGCTAGTAGACTTGTTTCTTC 59.468 42.308 13.75 0.00 35.50 2.87
127 128 6.748198 CCTAAGCTAGTAGACTTGTTTCTTCG 59.252 42.308 13.75 0.00 0.00 3.79
128 129 5.708877 AGCTAGTAGACTTGTTTCTTCGT 57.291 39.130 0.00 0.00 0.00 3.85
129 130 6.086785 AGCTAGTAGACTTGTTTCTTCGTT 57.913 37.500 0.00 0.00 0.00 3.85
130 131 6.151004 AGCTAGTAGACTTGTTTCTTCGTTC 58.849 40.000 0.00 0.00 0.00 3.95
131 132 6.016108 AGCTAGTAGACTTGTTTCTTCGTTCT 60.016 38.462 0.00 0.00 0.00 3.01
132 133 6.641723 GCTAGTAGACTTGTTTCTTCGTTCTT 59.358 38.462 0.00 0.00 0.00 2.52
133 134 6.830114 AGTAGACTTGTTTCTTCGTTCTTG 57.170 37.500 0.00 0.00 0.00 3.02
134 135 6.570692 AGTAGACTTGTTTCTTCGTTCTTGA 58.429 36.000 0.00 0.00 0.00 3.02
135 136 5.975410 AGACTTGTTTCTTCGTTCTTGAG 57.025 39.130 0.00 0.00 0.00 3.02
136 137 4.811557 AGACTTGTTTCTTCGTTCTTGAGG 59.188 41.667 0.00 0.00 0.00 3.86
137 138 4.766375 ACTTGTTTCTTCGTTCTTGAGGA 58.234 39.130 0.00 0.00 0.00 3.71
138 139 5.183228 ACTTGTTTCTTCGTTCTTGAGGAA 58.817 37.500 0.00 0.00 32.81 3.36
139 140 5.294552 ACTTGTTTCTTCGTTCTTGAGGAAG 59.705 40.000 2.91 2.91 46.59 3.46
149 150 7.653767 TCGTTCTTGAGGAAGATAAGTTTTC 57.346 36.000 0.00 0.00 38.05 2.29
150 151 6.649557 TCGTTCTTGAGGAAGATAAGTTTTCC 59.350 38.462 0.00 0.00 42.56 3.13
151 152 6.401153 CGTTCTTGAGGAAGATAAGTTTTCCG 60.401 42.308 0.21 0.00 45.95 4.30
152 153 6.110411 TCTTGAGGAAGATAAGTTTTCCGT 57.890 37.500 0.21 0.00 45.95 4.69
153 154 7.235935 TCTTGAGGAAGATAAGTTTTCCGTA 57.764 36.000 0.21 0.00 45.95 4.02
154 155 7.321153 TCTTGAGGAAGATAAGTTTTCCGTAG 58.679 38.462 0.21 0.62 45.95 3.51
155 156 6.600882 TGAGGAAGATAAGTTTTCCGTAGT 57.399 37.500 0.21 0.00 45.95 2.73
156 157 6.628185 TGAGGAAGATAAGTTTTCCGTAGTC 58.372 40.000 0.21 0.00 45.95 2.59
157 158 6.209986 TGAGGAAGATAAGTTTTCCGTAGTCA 59.790 38.462 0.21 0.00 45.95 3.41
158 159 7.093465 TGAGGAAGATAAGTTTTCCGTAGTCAT 60.093 37.037 0.21 0.00 45.95 3.06
159 160 8.302515 AGGAAGATAAGTTTTCCGTAGTCATA 57.697 34.615 0.21 0.00 45.95 2.15
160 161 8.414778 AGGAAGATAAGTTTTCCGTAGTCATAG 58.585 37.037 0.21 0.00 45.95 2.23
161 162 8.196103 GGAAGATAAGTTTTCCGTAGTCATAGT 58.804 37.037 0.00 0.00 34.09 2.12
162 163 9.235537 GAAGATAAGTTTTCCGTAGTCATAGTC 57.764 37.037 0.00 0.00 0.00 2.59
163 164 7.714703 AGATAAGTTTTCCGTAGTCATAGTCC 58.285 38.462 0.00 0.00 0.00 3.85
164 165 5.733620 AAGTTTTCCGTAGTCATAGTCCA 57.266 39.130 0.00 0.00 0.00 4.02
165 166 5.069501 AGTTTTCCGTAGTCATAGTCCAC 57.930 43.478 0.00 0.00 0.00 4.02
166 167 4.525487 AGTTTTCCGTAGTCATAGTCCACA 59.475 41.667 0.00 0.00 0.00 4.17
167 168 4.445452 TTTCCGTAGTCATAGTCCACAC 57.555 45.455 0.00 0.00 0.00 3.82
168 169 3.076079 TCCGTAGTCATAGTCCACACA 57.924 47.619 0.00 0.00 0.00 3.72
169 170 2.751259 TCCGTAGTCATAGTCCACACAC 59.249 50.000 0.00 0.00 0.00 3.82
170 171 2.490509 CCGTAGTCATAGTCCACACACA 59.509 50.000 0.00 0.00 0.00 3.72
171 172 3.130516 CCGTAGTCATAGTCCACACACAT 59.869 47.826 0.00 0.00 0.00 3.21
172 173 4.105486 CGTAGTCATAGTCCACACACATG 58.895 47.826 0.00 0.00 0.00 3.21
173 174 4.142469 CGTAGTCATAGTCCACACACATGA 60.142 45.833 0.00 0.00 0.00 3.07
174 175 4.193826 AGTCATAGTCCACACACATGAC 57.806 45.455 0.00 5.14 42.31 3.06
175 176 3.055819 AGTCATAGTCCACACACATGACC 60.056 47.826 0.00 0.00 42.64 4.02
176 177 2.236146 TCATAGTCCACACACATGACCC 59.764 50.000 0.00 0.00 0.00 4.46
177 178 0.981183 TAGTCCACACACATGACCCC 59.019 55.000 0.00 0.00 0.00 4.95
178 179 1.671054 GTCCACACACATGACCCCG 60.671 63.158 0.00 0.00 0.00 5.73
179 180 1.839296 TCCACACACATGACCCCGA 60.839 57.895 0.00 0.00 0.00 5.14
180 181 1.375908 CCACACACATGACCCCGAG 60.376 63.158 0.00 0.00 0.00 4.63
181 182 1.375908 CACACACATGACCCCGAGG 60.376 63.158 0.00 0.00 40.04 4.63
192 193 4.474642 CCCGAGGGGTCTAAACCT 57.525 61.111 0.00 0.00 45.66 3.50
193 194 1.905512 CCCGAGGGGTCTAAACCTG 59.094 63.158 0.00 0.00 45.66 4.00
194 195 0.616679 CCCGAGGGGTCTAAACCTGA 60.617 60.000 0.00 0.00 45.66 3.86
195 196 0.824759 CCGAGGGGTCTAAACCTGAG 59.175 60.000 0.00 0.00 45.66 3.35
196 197 1.618888 CCGAGGGGTCTAAACCTGAGA 60.619 57.143 0.00 0.00 45.66 3.27
197 198 2.389715 CGAGGGGTCTAAACCTGAGAT 58.610 52.381 0.00 0.00 45.66 2.75
198 199 3.563223 CGAGGGGTCTAAACCTGAGATA 58.437 50.000 0.00 0.00 45.66 1.98
199 200 4.153411 CGAGGGGTCTAAACCTGAGATAT 58.847 47.826 0.00 0.00 45.66 1.63
200 201 5.322754 CGAGGGGTCTAAACCTGAGATATA 58.677 45.833 0.00 0.00 45.66 0.86
201 202 5.183522 CGAGGGGTCTAAACCTGAGATATAC 59.816 48.000 0.00 0.00 45.66 1.47
202 203 6.296435 AGGGGTCTAAACCTGAGATATACT 57.704 41.667 0.00 0.00 45.66 2.12
203 204 6.694611 AGGGGTCTAAACCTGAGATATACTT 58.305 40.000 0.00 0.00 45.66 2.24
204 205 6.555360 AGGGGTCTAAACCTGAGATATACTTG 59.445 42.308 0.00 0.00 45.66 3.16
205 206 6.553852 GGGGTCTAAACCTGAGATATACTTGA 59.446 42.308 0.00 0.00 45.66 3.02
206 207 7.435305 GGGTCTAAACCTGAGATATACTTGAC 58.565 42.308 0.00 0.00 45.66 3.18
207 208 7.069578 GGGTCTAAACCTGAGATATACTTGACA 59.930 40.741 0.00 0.00 45.66 3.58
208 209 8.475639 GGTCTAAACCTGAGATATACTTGACAA 58.524 37.037 0.00 0.00 42.80 3.18
209 210 9.871238 GTCTAAACCTGAGATATACTTGACAAA 57.129 33.333 0.00 0.00 0.00 2.83
210 211 9.871238 TCTAAACCTGAGATATACTTGACAAAC 57.129 33.333 0.00 0.00 0.00 2.93
211 212 9.877178 CTAAACCTGAGATATACTTGACAAACT 57.123 33.333 0.00 0.00 0.00 2.66
213 214 9.574516 AAACCTGAGATATACTTGACAAACTTT 57.425 29.630 0.00 0.00 0.00 2.66
214 215 8.553459 ACCTGAGATATACTTGACAAACTTTG 57.447 34.615 0.00 0.00 0.00 2.77
216 217 9.003658 CCTGAGATATACTTGACAAACTTTGTT 57.996 33.333 8.56 0.00 45.52 2.83
222 223 5.830000 ACTTGACAAACTTTGTTAGTCCC 57.170 39.130 8.56 0.00 45.52 4.46
223 224 4.643334 ACTTGACAAACTTTGTTAGTCCCC 59.357 41.667 8.56 0.00 45.52 4.81
224 225 4.513406 TGACAAACTTTGTTAGTCCCCT 57.487 40.909 8.56 0.00 45.52 4.79
225 226 5.633655 TGACAAACTTTGTTAGTCCCCTA 57.366 39.130 8.56 0.00 45.52 3.53
226 227 6.195600 TGACAAACTTTGTTAGTCCCCTAT 57.804 37.500 8.56 0.00 45.52 2.57
227 228 6.001460 TGACAAACTTTGTTAGTCCCCTATG 58.999 40.000 8.56 0.00 45.52 2.23
228 229 6.183361 TGACAAACTTTGTTAGTCCCCTATGA 60.183 38.462 8.56 0.00 45.52 2.15
229 230 6.238648 ACAAACTTTGTTAGTCCCCTATGAG 58.761 40.000 1.00 0.00 42.22 2.90
230 231 6.183361 ACAAACTTTGTTAGTCCCCTATGAGT 60.183 38.462 1.00 0.00 42.22 3.41
231 232 7.016858 ACAAACTTTGTTAGTCCCCTATGAGTA 59.983 37.037 1.00 0.00 42.22 2.59
232 233 7.750947 AACTTTGTTAGTCCCCTATGAGTAT 57.249 36.000 0.00 0.00 35.54 2.12
233 234 8.849543 AACTTTGTTAGTCCCCTATGAGTATA 57.150 34.615 0.00 0.00 35.54 1.47
234 235 9.448587 AACTTTGTTAGTCCCCTATGAGTATAT 57.551 33.333 0.00 0.00 35.54 0.86
235 236 9.448587 ACTTTGTTAGTCCCCTATGAGTATATT 57.551 33.333 0.00 0.00 28.23 1.28
236 237 9.712305 CTTTGTTAGTCCCCTATGAGTATATTG 57.288 37.037 0.00 0.00 0.00 1.90
237 238 8.792830 TTGTTAGTCCCCTATGAGTATATTGT 57.207 34.615 0.00 0.00 0.00 2.71
238 239 8.418597 TGTTAGTCCCCTATGAGTATATTGTC 57.581 38.462 0.00 0.00 0.00 3.18
239 240 8.008332 TGTTAGTCCCCTATGAGTATATTGTCA 58.992 37.037 0.00 0.00 0.00 3.58
240 241 9.036980 GTTAGTCCCCTATGAGTATATTGTCAT 57.963 37.037 5.19 5.19 37.22 3.06
241 242 7.726033 AGTCCCCTATGAGTATATTGTCATC 57.274 40.000 3.41 0.00 35.08 2.92
242 243 7.248976 AGTCCCCTATGAGTATATTGTCATCA 58.751 38.462 3.41 0.00 35.08 3.07
243 244 7.734865 AGTCCCCTATGAGTATATTGTCATCAA 59.265 37.037 3.41 0.00 35.08 2.57
244 245 7.819900 GTCCCCTATGAGTATATTGTCATCAAC 59.180 40.741 3.41 0.00 36.33 3.18
245 246 7.512402 TCCCCTATGAGTATATTGTCATCAACA 59.488 37.037 3.41 0.00 36.33 3.33
246 247 8.324306 CCCCTATGAGTATATTGTCATCAACAT 58.676 37.037 3.41 0.00 37.82 2.71
247 248 9.376075 CCCTATGAGTATATTGTCATCAACATC 57.624 37.037 3.41 0.00 37.82 3.06
248 249 9.933723 CCTATGAGTATATTGTCATCAACATCA 57.066 33.333 3.41 0.00 37.82 3.07
264 265 9.199982 CATCAACATCAAAATATGATTAAGGGC 57.800 33.333 0.00 0.00 46.85 5.19
265 266 8.303780 TCAACATCAAAATATGATTAAGGGCA 57.696 30.769 0.00 0.00 46.85 5.36
266 267 8.926374 TCAACATCAAAATATGATTAAGGGCAT 58.074 29.630 0.00 0.00 46.85 4.40
267 268 8.984764 CAACATCAAAATATGATTAAGGGCATG 58.015 33.333 0.00 0.00 46.85 4.06
268 269 8.481492 ACATCAAAATATGATTAAGGGCATGA 57.519 30.769 0.00 0.00 46.85 3.07
269 270 9.096823 ACATCAAAATATGATTAAGGGCATGAT 57.903 29.630 0.00 0.00 46.85 2.45
270 271 9.938280 CATCAAAATATGATTAAGGGCATGATT 57.062 29.630 0.00 0.00 46.85 2.57
271 272 9.938280 ATCAAAATATGATTAAGGGCATGATTG 57.062 29.630 0.00 0.00 46.85 2.67
272 273 7.874016 TCAAAATATGATTAAGGGCATGATTGC 59.126 33.333 0.00 0.00 39.71 3.56
353 355 3.025322 TGAGACCCAAACACCACAAAT 57.975 42.857 0.00 0.00 0.00 2.32
385 387 3.243501 CGCCAATGTTAGCCATAGCATTT 60.244 43.478 0.00 0.00 39.85 2.32
436 441 0.320421 TGAACCTGCCTTCACTACGC 60.320 55.000 0.00 0.00 0.00 4.42
475 480 6.189859 AGAAAATCTCCAAACCTGCATATCA 58.810 36.000 0.00 0.00 0.00 2.15
485 490 5.886960 AACCTGCATATCAACAAACTCTC 57.113 39.130 0.00 0.00 0.00 3.20
486 491 5.171339 ACCTGCATATCAACAAACTCTCT 57.829 39.130 0.00 0.00 0.00 3.10
492 497 1.140312 TCAACAAACTCTCTGCCCCT 58.860 50.000 0.00 0.00 0.00 4.79
499 504 2.997315 TCTCTGCCCCTGACACCG 60.997 66.667 0.00 0.00 0.00 4.94
512 517 4.572389 CCCTGACACCGAAGATGAAAATAG 59.428 45.833 0.00 0.00 0.00 1.73
513 518 5.419542 CCTGACACCGAAGATGAAAATAGA 58.580 41.667 0.00 0.00 0.00 1.98
518 523 4.576463 CACCGAAGATGAAAATAGAAGGGG 59.424 45.833 0.00 0.00 0.00 4.79
539 559 3.244976 GGGCATCGAAAATGACAACTTG 58.755 45.455 0.00 0.00 0.00 3.16
558 578 0.106318 GGGCCGAGAGACTAGGGTTA 60.106 60.000 0.00 0.00 0.00 2.85
577 597 2.479566 ATGAACTTGCATCTCACGGT 57.520 45.000 0.00 0.00 0.00 4.83
579 599 2.959516 TGAACTTGCATCTCACGGTAG 58.040 47.619 0.00 0.00 0.00 3.18
794 922 1.202927 AGGCACCAGCTGCTCTTTTTA 60.203 47.619 8.66 0.00 46.25 1.52
795 923 1.200948 GGCACCAGCTGCTCTTTTTAG 59.799 52.381 8.66 0.00 46.25 1.85
798 926 0.813821 CCAGCTGCTCTTTTTAGGGC 59.186 55.000 8.66 0.00 0.00 5.19
799 927 1.538047 CAGCTGCTCTTTTTAGGGCA 58.462 50.000 0.00 0.00 0.00 5.36
801 929 1.889170 AGCTGCTCTTTTTAGGGCAAC 59.111 47.619 0.00 0.00 34.21 4.17
803 931 2.608016 GCTGCTCTTTTTAGGGCAACAC 60.608 50.000 0.95 0.00 39.74 3.32
812 965 5.699097 TTTTAGGGCAACACATACTGAAC 57.301 39.130 0.00 0.00 39.74 3.18
813 966 1.808411 AGGGCAACACATACTGAACG 58.192 50.000 0.00 0.00 39.74 3.95
816 969 2.095919 GGGCAACACATACTGAACGTTC 60.096 50.000 21.42 21.42 39.74 3.95
819 972 4.261031 GGCAACACATACTGAACGTTCTTT 60.261 41.667 27.32 16.76 0.00 2.52
845 1037 6.759497 AGAACAATATAAACCCAACAGCTC 57.241 37.500 0.00 0.00 0.00 4.09
909 1101 2.158740 GGCCCAATTAGAACTCTCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
912 1104 3.389656 CCCAATTAGAACTCTCCTCCCTC 59.610 52.174 0.00 0.00 0.00 4.30
1193 1389 0.038343 TGCTCGGCCTTTGATTTTGC 60.038 50.000 0.00 0.00 0.00 3.68
1247 1443 0.676782 AAGGCTGCGCGGAATTTAGT 60.677 50.000 23.20 0.00 0.00 2.24
1332 1528 1.270625 TGACCGACTGATTTGGGTGTC 60.271 52.381 0.00 0.00 31.83 3.67
1352 1548 2.178325 TCCCCTCGATAGGTGTATTGGA 59.822 50.000 1.17 0.00 41.89 3.53
1371 1567 4.280819 TGGATGATTGGGTTGGAATTCTC 58.719 43.478 5.23 0.00 0.00 2.87
1664 1868 3.821033 AGTTGGTGGTCTGAAAATACAGC 59.179 43.478 0.00 0.00 37.75 4.40
2035 2240 7.516481 CACAGTTATGCATTCTATGTATGAGC 58.484 38.462 3.54 0.00 36.27 4.26
2105 2310 6.423182 AGGCACCTTATCTGCTAATTAAACA 58.577 36.000 0.00 0.00 34.84 2.83
2143 2348 5.365403 AGTACTCTTGTCTCTCTGAAACG 57.635 43.478 0.00 0.00 0.00 3.60
2166 2371 6.590292 ACGGAATTATTGCCTGAATATCTACG 59.410 38.462 0.00 0.00 0.00 3.51
2174 2379 4.100963 TGCCTGAATATCTACGGTGACAAT 59.899 41.667 0.00 0.00 0.00 2.71
2248 2453 8.604890 CAGTTAAATTACTAGGCAGTTAGCTTC 58.395 37.037 0.00 0.00 44.79 3.86
2343 2549 8.958119 ACAACAAAGACTGTAGTATCTGAAAA 57.042 30.769 0.00 0.00 37.23 2.29
2344 2550 8.827677 ACAACAAAGACTGTAGTATCTGAAAAC 58.172 33.333 0.00 0.00 37.23 2.43
2345 2551 8.826710 CAACAAAGACTGTAGTATCTGAAAACA 58.173 33.333 0.00 0.00 37.23 2.83
2346 2552 9.561069 AACAAAGACTGTAGTATCTGAAAACAT 57.439 29.630 0.00 0.00 37.23 2.71
2347 2553 9.209175 ACAAAGACTGTAGTATCTGAAAACATC 57.791 33.333 0.00 0.00 36.10 3.06
2348 2554 9.208022 CAAAGACTGTAGTATCTGAAAACATCA 57.792 33.333 0.00 0.00 36.38 3.07
2439 2645 2.602456 GCATGAGAGATCATTTGCTGCG 60.602 50.000 0.00 0.00 0.00 5.18
2452 2658 4.624336 TTTGCTGCGTTTCTCAGTTTTA 57.376 36.364 0.00 0.00 34.21 1.52
2453 2659 4.624336 TTGCTGCGTTTCTCAGTTTTAA 57.376 36.364 0.00 0.00 34.21 1.52
2518 2724 3.988379 CAGTTTTGTGCATACTGTGGT 57.012 42.857 11.02 0.00 35.65 4.16
2551 2757 4.662278 TGCCACTTTAACTAGAGCCAAAT 58.338 39.130 0.00 0.00 0.00 2.32
2590 2796 9.757227 TTGAAACCATAGTTTTCCAAAATACAG 57.243 29.630 0.00 0.00 46.25 2.74
2591 2797 8.919145 TGAAACCATAGTTTTCCAAAATACAGT 58.081 29.630 0.00 0.00 46.25 3.55
2655 2861 4.283212 CCACCCTCATTGTTTTTATGGTGT 59.717 41.667 0.00 0.00 40.24 4.16
2663 2871 6.491745 TCATTGTTTTTATGGTGTCTAAGGCA 59.508 34.615 0.00 0.00 0.00 4.75
2772 2980 3.797353 CCTAGGCGCACCCCATGT 61.797 66.667 10.83 0.00 36.11 3.21
2785 2993 2.672908 CATGTGCTGCTCCCAGGA 59.327 61.111 0.00 0.00 39.54 3.86
2803 3011 1.612442 AGGGAAAGAGTAGCCCGCA 60.612 57.895 0.00 0.00 46.68 5.69
2836 3052 0.108585 GGGAAAGACTGGCTCACACA 59.891 55.000 0.00 0.00 0.00 3.72
2848 3064 2.182825 GCTCACACACGAATAGGTACG 58.817 52.381 0.00 0.00 0.00 3.67
2849 3065 2.159476 GCTCACACACGAATAGGTACGA 60.159 50.000 0.00 0.00 0.00 3.43
2850 3066 3.681855 CTCACACACGAATAGGTACGAG 58.318 50.000 0.00 0.00 0.00 4.18
2909 3147 2.487746 AGGGATTCCTCTTCTCCTCC 57.512 55.000 2.01 0.00 39.80 4.30
2920 3158 1.903183 CTTCTCCTCCCTCGACCTTTT 59.097 52.381 0.00 0.00 0.00 2.27
2938 3176 3.453679 GCGGCGTCTCCTTCCTCT 61.454 66.667 9.37 0.00 0.00 3.69
2946 3184 1.826096 GTCTCCTTCCTCTACGGCTTT 59.174 52.381 0.00 0.00 0.00 3.51
3109 3355 2.100584 AGCAGTGTAGCTAGATGTGCTC 59.899 50.000 19.27 0.00 44.50 4.26
3355 4859 6.854091 TGATCTCCAATGATCCTATGAGAG 57.146 41.667 0.00 5.54 41.42 3.20
3491 4995 3.324108 GGTGAGGCGGGGGTACAA 61.324 66.667 0.00 0.00 0.00 2.41
3493 4997 2.203877 TGAGGCGGGGGTACAACT 60.204 61.111 0.00 0.00 0.00 3.16
4173 5761 9.438291 CCATATTTTGAAGATACAAAGCTTACG 57.562 33.333 0.00 0.00 40.15 3.18
4285 5873 2.348666 CGTATAAGCGCTTCAGCAAAGT 59.651 45.455 28.82 0.87 42.21 2.66
4560 6150 7.223584 TGTGAAGAGGATTCATGTTCTGTTTA 58.776 34.615 9.24 0.00 0.00 2.01
4658 6249 5.127194 TGATGGATGAGGTATAGGATTACGC 59.873 44.000 0.00 0.00 0.00 4.42
4661 6252 4.082354 GGATGAGGTATAGGATTACGCGTT 60.082 45.833 20.78 0.00 0.00 4.84
4739 6330 3.823281 ATCTCTGAAGTCTGGCAGATG 57.177 47.619 21.84 8.96 40.11 2.90
4880 6471 7.949903 TTTAACAATGTTAGTGCTTCTCGTA 57.050 32.000 5.94 0.00 0.00 3.43
4988 6580 6.834451 AGGCTGAAGATGAATTTGAAGATGAT 59.166 34.615 0.00 0.00 0.00 2.45
5086 6679 2.358898 GGTGTGTGCCCTTATGCAATAG 59.641 50.000 0.00 0.00 44.11 1.73
5088 6681 4.196193 GTGTGTGCCCTTATGCAATAGTA 58.804 43.478 0.00 0.00 44.11 1.82
5195 6871 3.953612 TGGCTTGTTTGACTTCTCAATGT 59.046 39.130 0.00 0.00 36.26 2.71
5234 6910 1.004595 CGACACTGTGCATCATCTGG 58.995 55.000 7.90 0.00 0.00 3.86
5351 7040 1.619654 TTTGCTAGCTGGCATTGTGT 58.380 45.000 26.34 0.00 42.09 3.72
5352 7041 1.167851 TTGCTAGCTGGCATTGTGTC 58.832 50.000 26.34 0.00 42.09 3.67
5353 7042 0.036590 TGCTAGCTGGCATTGTGTCA 59.963 50.000 22.10 0.00 37.29 3.58
5358 7047 2.649831 CTGGCATTGTGTCAGGCTT 58.350 52.632 3.71 0.00 45.77 4.35
5359 7048 0.963962 CTGGCATTGTGTCAGGCTTT 59.036 50.000 3.71 0.00 45.77 3.51
5360 7049 1.342174 CTGGCATTGTGTCAGGCTTTT 59.658 47.619 3.71 0.00 45.77 2.27
5361 7050 1.068895 TGGCATTGTGTCAGGCTTTTG 59.931 47.619 0.00 0.00 0.00 2.44
5362 7051 1.069049 GGCATTGTGTCAGGCTTTTGT 59.931 47.619 0.00 0.00 0.00 2.83
5363 7052 2.129607 GCATTGTGTCAGGCTTTTGTG 58.870 47.619 0.00 0.00 0.00 3.33
5364 7053 2.129607 CATTGTGTCAGGCTTTTGTGC 58.870 47.619 0.00 0.00 0.00 4.57
5365 7054 1.473258 TTGTGTCAGGCTTTTGTGCT 58.527 45.000 0.00 0.00 0.00 4.40
5366 7055 1.024271 TGTGTCAGGCTTTTGTGCTC 58.976 50.000 0.00 0.00 0.00 4.26
5367 7056 1.312815 GTGTCAGGCTTTTGTGCTCT 58.687 50.000 0.00 0.00 0.00 4.09
5368 7057 1.265365 GTGTCAGGCTTTTGTGCTCTC 59.735 52.381 0.00 0.00 0.00 3.20
5369 7058 1.134128 TGTCAGGCTTTTGTGCTCTCA 60.134 47.619 0.00 0.00 0.00 3.27
5370 7059 2.157738 GTCAGGCTTTTGTGCTCTCAT 58.842 47.619 0.00 0.00 0.00 2.90
5458 7147 9.421806 CACATAAATTTAAAATTGAGCCTGACA 57.578 29.630 1.21 0.00 0.00 3.58
5474 7164 2.088423 TGACACTGTTTGCCGAGTTTT 58.912 42.857 0.00 0.00 0.00 2.43
5504 7194 9.967346 GCACTTTATCTCTTCTGTACATGTATA 57.033 33.333 9.18 5.40 0.00 1.47
5591 7281 4.163078 GGAGGAAGATGATGAGGAGTGAAA 59.837 45.833 0.00 0.00 0.00 2.69
5657 7347 0.924090 TGTAGAGTGGAGATCCCGGA 59.076 55.000 0.73 0.00 37.93 5.14
5832 7527 8.165239 TCAAGTATATTGTTATTGTGGGATGC 57.835 34.615 0.00 0.00 0.00 3.91
5839 7534 4.260985 TGTTATTGTGGGATGCAGTAGTG 58.739 43.478 0.00 0.00 0.00 2.74
5875 7585 5.534407 TGAGATACAGTTGCTTTAACGACA 58.466 37.500 0.00 0.00 44.15 4.35
5950 7660 3.917329 TTCAGTTACTCCTCGACAGTG 57.083 47.619 2.99 0.00 0.00 3.66
5961 7671 2.605338 CCTCGACAGTGCCATTTTTGTG 60.605 50.000 0.00 0.00 0.00 3.33
6096 7809 4.194720 GATCTGCGCCGGTCGACT 62.195 66.667 20.06 0.00 41.67 4.18
6195 7909 3.082548 CCCTGAGTCAACTCTCGTCTTA 58.917 50.000 11.23 0.00 43.25 2.10
6201 7915 5.074584 AGTCAACTCTCGTCTTATTTCCC 57.925 43.478 0.00 0.00 0.00 3.97
6223 7937 1.955080 GTCGTTCTCCCCTATCGACAT 59.045 52.381 10.36 0.00 46.28 3.06
6245 7959 2.282462 CCACAACACCAGCCCTCC 60.282 66.667 0.00 0.00 0.00 4.30
6314 8028 1.737735 CGACCGCAAGTGCTGATGA 60.738 57.895 1.46 0.00 39.32 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.985730 TTGCTCAAATGATCTTTAAAACAATCT 57.014 25.926 0.00 0.00 0.00 2.40
6 7 9.985730 TCTTGCTCAAATGATCTTTAAAACAAT 57.014 25.926 0.00 0.00 0.00 2.71
7 8 9.248291 GTCTTGCTCAAATGATCTTTAAAACAA 57.752 29.630 0.00 0.00 0.00 2.83
9 10 9.468532 AAGTCTTGCTCAAATGATCTTTAAAAC 57.531 29.630 0.00 0.00 0.00 2.43
11 12 9.683069 GAAAGTCTTGCTCAAATGATCTTTAAA 57.317 29.630 0.00 0.00 0.00 1.52
12 13 8.017373 CGAAAGTCTTGCTCAAATGATCTTTAA 58.983 33.333 0.00 0.00 0.00 1.52
13 14 7.521529 CGAAAGTCTTGCTCAAATGATCTTTA 58.478 34.615 0.00 0.00 0.00 1.85
14 15 6.376978 CGAAAGTCTTGCTCAAATGATCTTT 58.623 36.000 0.00 0.00 0.00 2.52
15 16 5.618640 GCGAAAGTCTTGCTCAAATGATCTT 60.619 40.000 0.00 0.00 0.00 2.40
16 17 4.142730 GCGAAAGTCTTGCTCAAATGATCT 60.143 41.667 0.00 0.00 0.00 2.75
17 18 4.094212 GCGAAAGTCTTGCTCAAATGATC 58.906 43.478 0.00 0.00 0.00 2.92
18 19 3.425359 CGCGAAAGTCTTGCTCAAATGAT 60.425 43.478 0.00 0.00 0.00 2.45
19 20 2.096268 CGCGAAAGTCTTGCTCAAATGA 60.096 45.455 0.00 0.00 0.00 2.57
20 21 2.096268 TCGCGAAAGTCTTGCTCAAATG 60.096 45.455 6.20 0.00 0.00 2.32
21 22 2.143122 TCGCGAAAGTCTTGCTCAAAT 58.857 42.857 6.20 0.00 0.00 2.32
22 23 1.526887 CTCGCGAAAGTCTTGCTCAAA 59.473 47.619 11.33 0.00 0.00 2.69
23 24 1.139989 CTCGCGAAAGTCTTGCTCAA 58.860 50.000 11.33 0.00 0.00 3.02
24 25 0.313987 TCTCGCGAAAGTCTTGCTCA 59.686 50.000 11.33 0.00 0.00 4.26
25 26 0.711118 GTCTCGCGAAAGTCTTGCTC 59.289 55.000 11.33 0.00 0.00 4.26
26 27 0.667792 GGTCTCGCGAAAGTCTTGCT 60.668 55.000 11.33 0.00 0.00 3.91
27 28 1.627550 GGGTCTCGCGAAAGTCTTGC 61.628 60.000 11.33 0.00 0.00 4.01
28 29 1.014564 GGGGTCTCGCGAAAGTCTTG 61.015 60.000 11.33 0.00 0.00 3.02
29 30 1.292541 GGGGTCTCGCGAAAGTCTT 59.707 57.895 11.33 0.00 0.00 3.01
30 31 1.258445 ATGGGGTCTCGCGAAAGTCT 61.258 55.000 11.33 0.00 0.00 3.24
31 32 1.084370 CATGGGGTCTCGCGAAAGTC 61.084 60.000 11.33 0.08 0.00 3.01
32 33 1.079127 CATGGGGTCTCGCGAAAGT 60.079 57.895 11.33 0.00 0.00 2.66
33 34 1.079127 ACATGGGGTCTCGCGAAAG 60.079 57.895 11.33 0.00 0.00 2.62
34 35 1.079405 GACATGGGGTCTCGCGAAA 60.079 57.895 11.33 0.00 43.46 3.46
35 36 2.577059 GACATGGGGTCTCGCGAA 59.423 61.111 11.33 0.00 43.46 4.70
36 37 3.458163 GGACATGGGGTCTCGCGA 61.458 66.667 9.26 9.26 46.16 5.87
37 38 4.530857 GGGACATGGGGTCTCGCG 62.531 72.222 0.00 0.00 46.16 5.87
40 41 2.042930 AGGGGGACATGGGGTCTC 59.957 66.667 0.00 0.00 46.92 3.36
41 42 2.042930 GAGGGGGACATGGGGTCT 59.957 66.667 0.00 0.00 46.16 3.85
42 43 0.327191 TAAGAGGGGGACATGGGGTC 60.327 60.000 0.00 0.00 46.20 4.46
43 44 0.122435 TTAAGAGGGGGACATGGGGT 59.878 55.000 0.00 0.00 0.00 4.95
44 45 1.534338 ATTAAGAGGGGGACATGGGG 58.466 55.000 0.00 0.00 0.00 4.96
45 46 3.073062 CACTATTAAGAGGGGGACATGGG 59.927 52.174 1.59 0.00 0.00 4.00
46 47 3.496870 GCACTATTAAGAGGGGGACATGG 60.497 52.174 0.78 0.00 0.00 3.66
47 48 3.744660 GCACTATTAAGAGGGGGACATG 58.255 50.000 0.78 0.00 0.00 3.21
48 49 2.368875 CGCACTATTAAGAGGGGGACAT 59.631 50.000 10.71 0.00 34.80 3.06
49 50 1.760613 CGCACTATTAAGAGGGGGACA 59.239 52.381 10.71 0.00 34.80 4.02
50 51 1.070289 CCGCACTATTAAGAGGGGGAC 59.930 57.143 17.20 0.00 41.05 4.46
51 52 1.420430 CCGCACTATTAAGAGGGGGA 58.580 55.000 17.20 0.00 41.05 4.81
53 54 1.420430 TCCCGCACTATTAAGAGGGG 58.580 55.000 0.78 2.68 43.32 4.79
54 55 2.872038 GCATCCCGCACTATTAAGAGGG 60.872 54.545 1.59 0.00 41.79 4.30
55 56 2.417719 GCATCCCGCACTATTAAGAGG 58.582 52.381 1.59 0.00 41.79 3.69
56 57 2.037772 AGGCATCCCGCACTATTAAGAG 59.962 50.000 0.00 0.00 45.17 2.85
57 58 2.047061 AGGCATCCCGCACTATTAAGA 58.953 47.619 0.00 0.00 45.17 2.10
58 59 2.550830 AGGCATCCCGCACTATTAAG 57.449 50.000 0.00 0.00 45.17 1.85
59 60 4.775780 AGTATAGGCATCCCGCACTATTAA 59.224 41.667 0.00 0.00 45.17 1.40
60 61 4.350245 AGTATAGGCATCCCGCACTATTA 58.650 43.478 0.00 0.00 45.17 0.98
61 62 3.173965 AGTATAGGCATCCCGCACTATT 58.826 45.455 0.00 0.00 45.17 1.73
62 63 2.761208 GAGTATAGGCATCCCGCACTAT 59.239 50.000 0.00 0.00 45.17 2.12
63 64 2.168496 GAGTATAGGCATCCCGCACTA 58.832 52.381 0.00 0.00 45.17 2.74
64 65 0.969894 GAGTATAGGCATCCCGCACT 59.030 55.000 0.00 0.00 45.17 4.40
65 66 0.679505 TGAGTATAGGCATCCCGCAC 59.320 55.000 0.00 0.00 45.17 5.34
66 67 1.344438 CTTGAGTATAGGCATCCCGCA 59.656 52.381 0.00 0.00 45.17 5.69
67 68 1.618837 TCTTGAGTATAGGCATCCCGC 59.381 52.381 0.00 0.00 41.28 6.13
68 69 3.069586 TGTTCTTGAGTATAGGCATCCCG 59.930 47.826 0.00 0.00 35.76 5.14
69 70 4.689612 TGTTCTTGAGTATAGGCATCCC 57.310 45.455 0.00 0.00 0.00 3.85
70 71 5.880332 TGTTTGTTCTTGAGTATAGGCATCC 59.120 40.000 0.00 0.00 0.00 3.51
71 72 6.985188 TGTTTGTTCTTGAGTATAGGCATC 57.015 37.500 0.00 0.00 0.00 3.91
72 73 7.759489 TTTGTTTGTTCTTGAGTATAGGCAT 57.241 32.000 0.00 0.00 0.00 4.40
73 74 7.575414 TTTTGTTTGTTCTTGAGTATAGGCA 57.425 32.000 0.00 0.00 0.00 4.75
74 75 7.595130 CCTTTTTGTTTGTTCTTGAGTATAGGC 59.405 37.037 0.00 0.00 0.00 3.93
75 76 8.082242 CCCTTTTTGTTTGTTCTTGAGTATAGG 58.918 37.037 0.00 0.00 0.00 2.57
76 77 7.595130 GCCCTTTTTGTTTGTTCTTGAGTATAG 59.405 37.037 0.00 0.00 0.00 1.31
77 78 7.430441 GCCCTTTTTGTTTGTTCTTGAGTATA 58.570 34.615 0.00 0.00 0.00 1.47
78 79 6.280643 GCCCTTTTTGTTTGTTCTTGAGTAT 58.719 36.000 0.00 0.00 0.00 2.12
79 80 5.394773 GGCCCTTTTTGTTTGTTCTTGAGTA 60.395 40.000 0.00 0.00 0.00 2.59
80 81 4.503910 GCCCTTTTTGTTTGTTCTTGAGT 58.496 39.130 0.00 0.00 0.00 3.41
81 82 3.871006 GGCCCTTTTTGTTTGTTCTTGAG 59.129 43.478 0.00 0.00 0.00 3.02
82 83 3.517500 AGGCCCTTTTTGTTTGTTCTTGA 59.482 39.130 0.00 0.00 0.00 3.02
83 84 3.872696 AGGCCCTTTTTGTTTGTTCTTG 58.127 40.909 0.00 0.00 0.00 3.02
84 85 5.670485 CTTAGGCCCTTTTTGTTTGTTCTT 58.330 37.500 0.00 0.00 0.00 2.52
85 86 4.442893 GCTTAGGCCCTTTTTGTTTGTTCT 60.443 41.667 0.00 0.00 0.00 3.01
86 87 3.807622 GCTTAGGCCCTTTTTGTTTGTTC 59.192 43.478 0.00 0.00 0.00 3.18
87 88 3.454447 AGCTTAGGCCCTTTTTGTTTGTT 59.546 39.130 0.00 0.00 39.73 2.83
88 89 3.038280 AGCTTAGGCCCTTTTTGTTTGT 58.962 40.909 0.00 0.00 39.73 2.83
89 90 3.751479 AGCTTAGGCCCTTTTTGTTTG 57.249 42.857 0.00 0.00 39.73 2.93
90 91 4.480115 ACTAGCTTAGGCCCTTTTTGTTT 58.520 39.130 0.00 0.00 39.73 2.83
91 92 4.114015 ACTAGCTTAGGCCCTTTTTGTT 57.886 40.909 0.00 0.00 39.73 2.83
92 93 3.808834 ACTAGCTTAGGCCCTTTTTGT 57.191 42.857 0.00 0.00 39.73 2.83
93 94 4.876679 GTCTACTAGCTTAGGCCCTTTTTG 59.123 45.833 0.00 0.00 39.73 2.44
94 95 4.783763 AGTCTACTAGCTTAGGCCCTTTTT 59.216 41.667 0.00 0.00 39.73 1.94
95 96 4.363573 AGTCTACTAGCTTAGGCCCTTTT 58.636 43.478 0.00 0.00 39.73 2.27
96 97 3.996957 AGTCTACTAGCTTAGGCCCTTT 58.003 45.455 0.00 0.00 39.73 3.11
97 98 3.691698 AGTCTACTAGCTTAGGCCCTT 57.308 47.619 0.00 0.00 39.73 3.95
98 99 3.301274 CAAGTCTACTAGCTTAGGCCCT 58.699 50.000 0.00 0.00 39.73 5.19
99 100 3.032459 ACAAGTCTACTAGCTTAGGCCC 58.968 50.000 0.00 0.00 39.73 5.80
100 101 4.739587 AACAAGTCTACTAGCTTAGGCC 57.260 45.455 0.00 0.00 39.73 5.19
101 102 5.968254 AGAAACAAGTCTACTAGCTTAGGC 58.032 41.667 0.00 0.00 39.06 3.93
102 103 6.748198 CGAAGAAACAAGTCTACTAGCTTAGG 59.252 42.308 0.00 0.00 0.00 2.69
103 104 7.306953 ACGAAGAAACAAGTCTACTAGCTTAG 58.693 38.462 0.00 0.00 0.00 2.18
104 105 7.211966 ACGAAGAAACAAGTCTACTAGCTTA 57.788 36.000 0.00 0.00 0.00 3.09
105 106 6.086785 ACGAAGAAACAAGTCTACTAGCTT 57.913 37.500 0.00 0.00 0.00 3.74
106 107 5.708877 ACGAAGAAACAAGTCTACTAGCT 57.291 39.130 0.00 0.00 0.00 3.32
107 108 6.151004 AGAACGAAGAAACAAGTCTACTAGC 58.849 40.000 0.00 0.00 0.00 3.42
108 109 7.861372 TCAAGAACGAAGAAACAAGTCTACTAG 59.139 37.037 0.00 0.00 0.00 2.57
109 110 7.709947 TCAAGAACGAAGAAACAAGTCTACTA 58.290 34.615 0.00 0.00 0.00 1.82
110 111 6.570692 TCAAGAACGAAGAAACAAGTCTACT 58.429 36.000 0.00 0.00 0.00 2.57
111 112 6.074249 CCTCAAGAACGAAGAAACAAGTCTAC 60.074 42.308 0.00 0.00 0.00 2.59
112 113 5.983720 CCTCAAGAACGAAGAAACAAGTCTA 59.016 40.000 0.00 0.00 0.00 2.59
113 114 4.811557 CCTCAAGAACGAAGAAACAAGTCT 59.188 41.667 0.00 0.00 0.00 3.24
114 115 4.809426 TCCTCAAGAACGAAGAAACAAGTC 59.191 41.667 0.00 0.00 0.00 3.01
115 116 4.766375 TCCTCAAGAACGAAGAAACAAGT 58.234 39.130 0.00 0.00 0.00 3.16
116 117 5.523916 TCTTCCTCAAGAACGAAGAAACAAG 59.476 40.000 0.00 0.00 39.16 3.16
117 118 5.424757 TCTTCCTCAAGAACGAAGAAACAA 58.575 37.500 0.00 0.00 39.16 2.83
118 119 5.018539 TCTTCCTCAAGAACGAAGAAACA 57.981 39.130 0.00 0.00 39.16 2.83
119 120 7.385478 ACTTATCTTCCTCAAGAACGAAGAAAC 59.615 37.037 11.19 0.00 43.74 2.78
120 121 7.442656 ACTTATCTTCCTCAAGAACGAAGAAA 58.557 34.615 11.19 7.80 43.74 2.52
121 122 6.994221 ACTTATCTTCCTCAAGAACGAAGAA 58.006 36.000 11.19 0.14 43.74 2.52
122 123 6.591750 ACTTATCTTCCTCAAGAACGAAGA 57.408 37.500 10.11 10.11 44.42 2.87
123 124 7.659652 AAACTTATCTTCCTCAAGAACGAAG 57.340 36.000 0.00 0.00 42.14 3.79
124 125 7.172703 GGAAAACTTATCTTCCTCAAGAACGAA 59.827 37.037 0.00 0.00 42.14 3.85
125 126 6.649557 GGAAAACTTATCTTCCTCAAGAACGA 59.350 38.462 0.00 0.00 42.14 3.85
126 127 6.401153 CGGAAAACTTATCTTCCTCAAGAACG 60.401 42.308 0.00 0.00 42.14 3.95
127 128 6.427242 ACGGAAAACTTATCTTCCTCAAGAAC 59.573 38.462 0.00 0.00 42.14 3.01
128 129 6.531021 ACGGAAAACTTATCTTCCTCAAGAA 58.469 36.000 0.00 0.00 42.14 2.52
129 130 6.110411 ACGGAAAACTTATCTTCCTCAAGA 57.890 37.500 0.00 0.00 43.06 3.02
130 131 7.097834 ACTACGGAAAACTTATCTTCCTCAAG 58.902 38.462 0.00 0.00 39.23 3.02
131 132 7.001099 ACTACGGAAAACTTATCTTCCTCAA 57.999 36.000 0.00 0.00 39.23 3.02
132 133 6.209986 TGACTACGGAAAACTTATCTTCCTCA 59.790 38.462 0.00 0.00 39.23 3.86
133 134 6.628185 TGACTACGGAAAACTTATCTTCCTC 58.372 40.000 0.00 0.00 39.23 3.71
134 135 6.600882 TGACTACGGAAAACTTATCTTCCT 57.399 37.500 0.00 0.00 39.23 3.36
135 136 8.196103 ACTATGACTACGGAAAACTTATCTTCC 58.804 37.037 0.00 0.00 38.20 3.46
136 137 9.235537 GACTATGACTACGGAAAACTTATCTTC 57.764 37.037 0.00 0.00 0.00 2.87
137 138 8.196103 GGACTATGACTACGGAAAACTTATCTT 58.804 37.037 0.00 0.00 0.00 2.40
138 139 7.341256 TGGACTATGACTACGGAAAACTTATCT 59.659 37.037 0.00 0.00 0.00 1.98
139 140 7.434602 GTGGACTATGACTACGGAAAACTTATC 59.565 40.741 0.00 0.00 0.00 1.75
140 141 7.093640 TGTGGACTATGACTACGGAAAACTTAT 60.094 37.037 0.00 0.00 0.00 1.73
141 142 6.209192 TGTGGACTATGACTACGGAAAACTTA 59.791 38.462 0.00 0.00 0.00 2.24
142 143 5.011329 TGTGGACTATGACTACGGAAAACTT 59.989 40.000 0.00 0.00 0.00 2.66
143 144 4.525487 TGTGGACTATGACTACGGAAAACT 59.475 41.667 0.00 0.00 0.00 2.66
144 145 4.624452 GTGTGGACTATGACTACGGAAAAC 59.376 45.833 0.00 0.00 0.00 2.43
145 146 4.281435 TGTGTGGACTATGACTACGGAAAA 59.719 41.667 0.00 0.00 0.00 2.29
146 147 3.827876 TGTGTGGACTATGACTACGGAAA 59.172 43.478 0.00 0.00 0.00 3.13
147 148 3.192001 GTGTGTGGACTATGACTACGGAA 59.808 47.826 0.00 0.00 0.00 4.30
148 149 2.751259 GTGTGTGGACTATGACTACGGA 59.249 50.000 0.00 0.00 0.00 4.69
149 150 2.490509 TGTGTGTGGACTATGACTACGG 59.509 50.000 0.00 0.00 0.00 4.02
150 151 3.842732 TGTGTGTGGACTATGACTACG 57.157 47.619 0.00 0.00 0.00 3.51
151 152 5.103000 GTCATGTGTGTGGACTATGACTAC 58.897 45.833 0.00 0.00 40.47 2.73
152 153 4.159693 GGTCATGTGTGTGGACTATGACTA 59.840 45.833 13.35 0.00 41.76 2.59
153 154 3.055819 GGTCATGTGTGTGGACTATGACT 60.056 47.826 13.35 0.00 41.76 3.41
154 155 3.262420 GGTCATGTGTGTGGACTATGAC 58.738 50.000 0.00 0.00 41.56 3.06
155 156 2.236146 GGGTCATGTGTGTGGACTATGA 59.764 50.000 0.00 0.00 0.00 2.15
156 157 2.632377 GGGTCATGTGTGTGGACTATG 58.368 52.381 0.00 0.00 0.00 2.23
157 158 1.559682 GGGGTCATGTGTGTGGACTAT 59.440 52.381 0.00 0.00 0.00 2.12
158 159 0.981183 GGGGTCATGTGTGTGGACTA 59.019 55.000 0.00 0.00 0.00 2.59
159 160 1.761174 GGGGTCATGTGTGTGGACT 59.239 57.895 0.00 0.00 0.00 3.85
160 161 1.671054 CGGGGTCATGTGTGTGGAC 60.671 63.158 0.00 0.00 0.00 4.02
161 162 1.826340 CTCGGGGTCATGTGTGTGGA 61.826 60.000 0.00 0.00 0.00 4.02
162 163 1.375908 CTCGGGGTCATGTGTGTGG 60.376 63.158 0.00 0.00 0.00 4.17
163 164 1.375908 CCTCGGGGTCATGTGTGTG 60.376 63.158 0.00 0.00 0.00 3.82
164 165 2.592993 CCCTCGGGGTCATGTGTGT 61.593 63.158 0.00 0.00 38.25 3.72
165 166 2.268920 CCCTCGGGGTCATGTGTG 59.731 66.667 0.00 0.00 38.25 3.82
182 183 8.008513 TGTCAAGTATATCTCAGGTTTAGACC 57.991 38.462 0.00 0.00 46.92 3.85
183 184 9.871238 TTTGTCAAGTATATCTCAGGTTTAGAC 57.129 33.333 0.00 0.00 0.00 2.59
184 185 9.871238 GTTTGTCAAGTATATCTCAGGTTTAGA 57.129 33.333 0.00 0.00 0.00 2.10
185 186 9.877178 AGTTTGTCAAGTATATCTCAGGTTTAG 57.123 33.333 0.00 0.00 0.00 1.85
187 188 9.574516 AAAGTTTGTCAAGTATATCTCAGGTTT 57.425 29.630 0.00 0.00 0.00 3.27
188 189 9.003658 CAAAGTTTGTCAAGTATATCTCAGGTT 57.996 33.333 7.48 0.00 0.00 3.50
189 190 8.157476 ACAAAGTTTGTCAAGTATATCTCAGGT 58.843 33.333 15.58 0.00 40.56 4.00
190 191 8.553459 ACAAAGTTTGTCAAGTATATCTCAGG 57.447 34.615 15.58 0.00 40.56 3.86
196 197 9.227777 GGGACTAACAAAGTTTGTCAAGTATAT 57.772 33.333 25.22 11.68 44.59 0.86
197 198 7.662669 GGGGACTAACAAAGTTTGTCAAGTATA 59.337 37.037 25.22 13.16 44.59 1.47
198 199 6.489022 GGGGACTAACAAAGTTTGTCAAGTAT 59.511 38.462 25.22 12.81 44.59 2.12
199 200 5.824097 GGGGACTAACAAAGTTTGTCAAGTA 59.176 40.000 25.22 13.98 44.59 2.24
200 201 4.643334 GGGGACTAACAAAGTTTGTCAAGT 59.357 41.667 25.36 25.36 44.59 3.16
201 202 4.887655 AGGGGACTAACAAAGTTTGTCAAG 59.112 41.667 21.10 21.08 44.59 3.02
202 203 4.862371 AGGGGACTAACAAAGTTTGTCAA 58.138 39.130 21.10 11.74 44.59 3.18
203 204 4.513406 AGGGGACTAACAAAGTTTGTCA 57.487 40.909 21.10 6.56 44.59 3.58
218 219 7.482169 TGATGACAATATACTCATAGGGGAC 57.518 40.000 0.00 0.00 0.00 4.46
219 220 7.512402 TGTTGATGACAATATACTCATAGGGGA 59.488 37.037 0.00 0.00 38.32 4.81
220 221 7.679783 TGTTGATGACAATATACTCATAGGGG 58.320 38.462 0.00 0.00 38.32 4.79
221 222 9.376075 GATGTTGATGACAATATACTCATAGGG 57.624 37.037 0.00 0.00 42.62 3.53
222 223 9.933723 TGATGTTGATGACAATATACTCATAGG 57.066 33.333 0.00 0.00 42.62 2.57
238 239 9.199982 GCCCTTAATCATATTTTGATGTTGATG 57.800 33.333 0.00 0.00 44.51 3.07
239 240 8.926374 TGCCCTTAATCATATTTTGATGTTGAT 58.074 29.630 0.00 0.00 44.51 2.57
240 241 8.303780 TGCCCTTAATCATATTTTGATGTTGA 57.696 30.769 0.00 0.00 44.51 3.18
241 242 8.984764 CATGCCCTTAATCATATTTTGATGTTG 58.015 33.333 0.00 0.00 44.51 3.33
242 243 8.926374 TCATGCCCTTAATCATATTTTGATGTT 58.074 29.630 0.00 0.00 44.51 2.71
243 244 8.481492 TCATGCCCTTAATCATATTTTGATGT 57.519 30.769 0.00 0.00 44.51 3.06
244 245 9.938280 AATCATGCCCTTAATCATATTTTGATG 57.062 29.630 0.00 0.00 44.51 3.07
279 280 8.383175 TGGGATTGTAGATTTCAGTTTCTAACT 58.617 33.333 0.00 0.00 44.06 2.24
475 480 1.140312 TCAGGGGCAGAGAGTTTGTT 58.860 50.000 0.00 0.00 0.00 2.83
485 490 1.903877 ATCTTCGGTGTCAGGGGCAG 61.904 60.000 0.00 0.00 0.00 4.85
486 491 1.918293 ATCTTCGGTGTCAGGGGCA 60.918 57.895 0.00 0.00 0.00 5.36
492 497 5.874810 CCTTCTATTTTCATCTTCGGTGTCA 59.125 40.000 0.00 0.00 0.00 3.58
518 523 3.244976 CAAGTTGTCATTTTCGATGCCC 58.755 45.455 0.00 0.00 0.00 5.36
521 526 3.244976 GCCCAAGTTGTCATTTTCGATG 58.755 45.455 1.45 0.00 0.00 3.84
523 528 1.611491 GGCCCAAGTTGTCATTTTCGA 59.389 47.619 1.45 0.00 0.00 3.71
524 529 1.665735 CGGCCCAAGTTGTCATTTTCG 60.666 52.381 0.00 0.00 0.00 3.46
539 559 0.106318 TAACCCTAGTCTCTCGGCCC 60.106 60.000 0.00 0.00 0.00 5.80
558 578 2.479566 ACCGTGAGATGCAAGTTCAT 57.520 45.000 0.00 0.00 0.00 2.57
577 597 1.663388 CGCATTATCCGCACCGCTA 60.663 57.895 0.00 0.00 0.00 4.26
579 599 2.430080 CTTCGCATTATCCGCACCGC 62.430 60.000 0.00 0.00 0.00 5.68
754 882 6.479660 GTGCCTCAAACAAAATGAAAGATTGA 59.520 34.615 0.00 0.00 0.00 2.57
794 922 1.071699 ACGTTCAGTATGTGTTGCCCT 59.928 47.619 0.00 0.00 37.40 5.19
795 923 1.519408 ACGTTCAGTATGTGTTGCCC 58.481 50.000 0.00 0.00 37.40 5.36
798 926 8.332464 TCTAAAAAGAACGTTCAGTATGTGTTG 58.668 33.333 28.78 9.65 37.40 3.33
799 927 8.428186 TCTAAAAAGAACGTTCAGTATGTGTT 57.572 30.769 28.78 9.92 37.40 3.32
801 929 8.695355 GTTCTAAAAAGAACGTTCAGTATGTG 57.305 34.615 28.78 13.34 38.75 3.21
819 972 8.644374 AGCTGTTGGGTTTATATTGTTCTAAA 57.356 30.769 0.00 0.00 0.00 1.85
831 984 0.317799 TACGCGAGCTGTTGGGTTTA 59.682 50.000 15.93 0.00 35.00 2.01
838 1030 1.664151 GCCTTTATTACGCGAGCTGTT 59.336 47.619 15.93 0.00 0.00 3.16
845 1037 1.011574 GCGGTGCCTTTATTACGCG 60.012 57.895 3.53 3.53 37.60 6.01
876 1068 2.299326 ATTGGGCCTCATCTTATGGC 57.701 50.000 4.53 0.00 45.42 4.40
945 1137 3.938637 CTTGGGTTTCCGGGGAGGC 62.939 68.421 0.00 0.00 40.77 4.70
1193 1389 1.976045 CGAAAATGAAAAGAACGGCGG 59.024 47.619 13.24 0.00 0.00 6.13
1247 1443 4.148838 ACAAATCGGGAGTTGAAATTCCA 58.851 39.130 14.89 0.00 38.53 3.53
1352 1548 3.703052 GCAGAGAATTCCAACCCAATCAT 59.297 43.478 0.65 0.00 0.00 2.45
1371 1567 4.120755 GGCCTGGAGGGGAAGCAG 62.121 72.222 0.00 0.00 35.18 4.24
2035 2240 8.090214 ACAAATCCTTTGGTGTTTCATCATTAG 58.910 33.333 4.77 0.00 44.81 1.73
2105 2310 9.780186 ACAAGAGTACTAAGCAATTAAAAGACT 57.220 29.630 0.00 0.00 0.00 3.24
2143 2348 6.879458 ACCGTAGATATTCAGGCAATAATTCC 59.121 38.462 0.00 0.00 30.39 3.01
2166 2371 7.915397 GTCCATTCACAATATGTTATTGTCACC 59.085 37.037 9.37 0.00 39.94 4.02
2174 2379 5.754782 AGCCTGTCCATTCACAATATGTTA 58.245 37.500 0.00 0.00 0.00 2.41
2248 2453 2.680913 CGCTTCCAAACGGAGCCTG 61.681 63.158 0.00 0.00 32.88 4.85
2359 2565 2.889045 ACACGGCACTGTCTAAGTAAGA 59.111 45.455 0.00 0.00 36.83 2.10
2360 2566 3.299340 ACACGGCACTGTCTAAGTAAG 57.701 47.619 0.00 0.00 36.83 2.34
2361 2567 3.738830 AACACGGCACTGTCTAAGTAA 57.261 42.857 0.00 0.00 36.83 2.24
2362 2568 3.386486 CAAACACGGCACTGTCTAAGTA 58.614 45.455 0.00 0.00 36.83 2.24
2363 2569 2.210116 CAAACACGGCACTGTCTAAGT 58.790 47.619 0.00 0.00 40.93 2.24
2364 2570 1.531149 CCAAACACGGCACTGTCTAAG 59.469 52.381 0.00 0.00 0.00 2.18
2365 2571 1.588674 CCAAACACGGCACTGTCTAA 58.411 50.000 0.00 0.00 0.00 2.10
2366 2572 3.299050 CCAAACACGGCACTGTCTA 57.701 52.632 0.00 0.00 0.00 2.59
2367 2573 4.141144 CCAAACACGGCACTGTCT 57.859 55.556 0.00 0.00 0.00 3.41
2575 2781 9.191995 CAAGAATACCACTGTATTTTGGAAAAC 57.808 33.333 0.01 0.00 45.47 2.43
2611 2817 5.355630 GTGGGTTTGGTTGCAAAGTATTTTT 59.644 36.000 0.00 0.00 35.03 1.94
2623 2829 1.344114 CAATGAGGGTGGGTTTGGTTG 59.656 52.381 0.00 0.00 0.00 3.77
2655 2861 2.505982 GCGCCCTGATGCCTTAGA 59.494 61.111 0.00 0.00 0.00 2.10
2737 2945 4.812476 TGGCCGATTCAGACGCCG 62.812 66.667 0.00 0.00 32.72 6.46
2785 2993 1.612442 TGCGGGCTACTCTTTCCCT 60.612 57.895 0.00 0.00 37.89 4.20
2803 3011 3.004002 GTCTTTCCCGTGAAAATTTCCGT 59.996 43.478 3.00 0.00 39.88 4.69
2836 3052 2.486907 CCTCCTCCTCGTACCTATTCGT 60.487 54.545 0.00 0.00 0.00 3.85
2848 3064 2.015726 TCCCTCCCTCCTCCTCCTC 61.016 68.421 0.00 0.00 0.00 3.71
2849 3065 2.018086 CTCCCTCCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
2850 3066 2.015726 TCTCCCTCCCTCCTCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
2909 3147 3.788766 CGCCGCAAAAGGTCGAGG 61.789 66.667 0.00 0.00 34.41 4.63
2920 3158 2.831894 TAGAGGAAGGAGACGCCGCA 62.832 60.000 0.00 0.00 43.43 5.69
2938 3176 3.153024 GGCACAGATCAAAGCCGTA 57.847 52.632 6.57 0.00 37.41 4.02
2946 3184 0.252881 AGGAGGAAGGGCACAGATCA 60.253 55.000 0.00 0.00 0.00 2.92
3109 3355 4.168291 GAGGGGAAGGAGCAGCCG 62.168 72.222 0.00 0.00 43.43 5.52
3355 4859 3.672808 CTGGATCATTGGATGTAGCTCC 58.327 50.000 0.00 0.00 32.67 4.70
3491 4995 0.544595 AAGGTGGTAAGGCGAGGAGT 60.545 55.000 0.00 0.00 0.00 3.85
3493 4997 1.188863 GTAAGGTGGTAAGGCGAGGA 58.811 55.000 0.00 0.00 0.00 3.71
3927 5515 5.647658 TGGTTCCACATAATTACTCAGCAAG 59.352 40.000 0.00 0.00 0.00 4.01
4173 5761 7.274904 CCATCATCACTGAATGAACATGTTTTC 59.725 37.037 13.36 13.59 41.93 2.29
4333 5921 4.812626 GCCTTTCCATTTGCAATATCCTTG 59.187 41.667 0.00 0.00 0.00 3.61
4471 6061 7.068226 TGACGTCTCTCTATGTTGGAATGAATA 59.932 37.037 17.92 0.00 0.00 1.75
4658 6249 2.866762 GGAGCTACAAGCATAGGAAACG 59.133 50.000 1.22 0.00 45.56 3.60
4661 6252 2.158900 GCAGGAGCTACAAGCATAGGAA 60.159 50.000 8.39 0.00 45.56 3.36
4719 6310 2.435069 CCATCTGCCAGACTTCAGAGAT 59.565 50.000 0.00 0.00 41.95 2.75
4739 6330 6.225981 AGAGTTCCAAATTTATGCCATTCC 57.774 37.500 0.00 0.00 0.00 3.01
4786 6377 4.159135 ACCTGCATGATTGGAATTTCTCAC 59.841 41.667 0.00 0.00 0.00 3.51
4988 6580 4.624913 ACAGGATTACCTCTTCATCCTCA 58.375 43.478 0.00 0.00 44.32 3.86
5078 6671 7.843490 ACAAGAACGTTATGTACTATTGCAT 57.157 32.000 15.37 0.00 32.13 3.96
5086 6679 9.525007 CAAATGAACTACAAGAACGTTATGTAC 57.475 33.333 17.73 11.55 0.00 2.90
5088 6681 7.075741 GCAAATGAACTACAAGAACGTTATGT 58.924 34.615 19.38 19.38 0.00 2.29
5195 6871 6.256975 GTGTCGTGGTATGAACAGCAAATATA 59.743 38.462 0.00 0.00 0.00 0.86
5202 6878 1.726791 CAGTGTCGTGGTATGAACAGC 59.273 52.381 0.00 0.00 0.00 4.40
5234 6910 2.622436 GGTTAGAGCACCTGTGATGAC 58.378 52.381 0.51 0.00 33.50 3.06
5351 7040 2.574006 ATGAGAGCACAAAAGCCTGA 57.426 45.000 0.00 0.00 34.23 3.86
5352 7041 2.681848 CCTATGAGAGCACAAAAGCCTG 59.318 50.000 0.00 0.00 34.23 4.85
5353 7042 2.943199 GCCTATGAGAGCACAAAAGCCT 60.943 50.000 0.00 0.00 34.23 4.58
5354 7043 1.403323 GCCTATGAGAGCACAAAAGCC 59.597 52.381 0.00 0.00 34.23 4.35
5355 7044 1.403323 GGCCTATGAGAGCACAAAAGC 59.597 52.381 0.00 0.00 0.00 3.51
5356 7045 2.681848 CAGGCCTATGAGAGCACAAAAG 59.318 50.000 3.98 0.00 0.00 2.27
5358 7047 1.908619 TCAGGCCTATGAGAGCACAAA 59.091 47.619 3.98 0.00 0.00 2.83
5359 7048 1.571955 TCAGGCCTATGAGAGCACAA 58.428 50.000 3.98 0.00 0.00 3.33
5360 7049 1.483827 CTTCAGGCCTATGAGAGCACA 59.516 52.381 3.98 0.00 0.00 4.57
5361 7050 1.202627 CCTTCAGGCCTATGAGAGCAC 60.203 57.143 3.98 0.00 0.00 4.40
5362 7051 1.126488 CCTTCAGGCCTATGAGAGCA 58.874 55.000 3.98 0.00 0.00 4.26
5363 7052 1.418334 TCCTTCAGGCCTATGAGAGC 58.582 55.000 3.98 0.00 34.44 4.09
5364 7053 4.102210 TCATTTCCTTCAGGCCTATGAGAG 59.898 45.833 3.98 1.34 34.44 3.20
5365 7054 4.040047 TCATTTCCTTCAGGCCTATGAGA 58.960 43.478 3.98 0.00 34.44 3.27
5366 7055 4.141528 ACTCATTTCCTTCAGGCCTATGAG 60.142 45.833 27.05 27.05 42.72 2.90
5367 7056 3.782523 ACTCATTTCCTTCAGGCCTATGA 59.217 43.478 3.98 8.56 34.44 2.15
5368 7057 4.162040 ACTCATTTCCTTCAGGCCTATG 57.838 45.455 3.98 3.61 34.44 2.23
5369 7058 4.870021 AACTCATTTCCTTCAGGCCTAT 57.130 40.909 3.98 0.00 34.44 2.57
5370 7059 4.042809 TCAAACTCATTTCCTTCAGGCCTA 59.957 41.667 3.98 0.00 34.44 3.93
5458 7147 2.874849 CAACAAAACTCGGCAAACAGT 58.125 42.857 0.00 0.00 0.00 3.55
5474 7164 6.521162 TGTACAGAAGAGATAAAGTGCAACA 58.479 36.000 0.00 0.00 41.43 3.33
5504 7194 8.680903 CCTACAGAAGTTGCAAAAGAATGATAT 58.319 33.333 0.00 0.00 0.00 1.63
5657 7347 1.283321 GCTTTTCAGTCCCCAGGAGAT 59.717 52.381 0.00 0.00 29.39 2.75
5832 7527 3.069586 TCAGGAAACACAGACCACTACTG 59.930 47.826 0.00 0.00 40.68 2.74
5839 7534 4.499183 CTGTATCTCAGGAAACACAGACC 58.501 47.826 0.00 0.00 40.23 3.85
5950 7660 4.989797 TGAATGATGTGACACAAAAATGGC 59.010 37.500 13.23 4.15 0.00 4.40
6023 7736 4.566004 TGTAACACGCTCTAGCTTTCATT 58.434 39.130 0.00 0.00 39.32 2.57
6113 7826 0.530744 GGACGATGTAGCTGTGACCA 59.469 55.000 0.00 0.00 0.00 4.02
6195 7909 1.600638 GGGAGAACGACCGGGAAAT 59.399 57.895 6.32 0.00 0.00 2.17
6201 7915 0.816825 TCGATAGGGGAGAACGACCG 60.817 60.000 0.00 0.00 0.00 4.79
6223 7937 2.832661 GCTGGTGTTGTGGGTGCA 60.833 61.111 0.00 0.00 0.00 4.57
6314 8028 0.263172 ATGACTGGGAGAGGGACGAT 59.737 55.000 0.00 0.00 0.00 3.73
6471 8215 2.757099 CTGCAACCATGGGGCCTC 60.757 66.667 23.09 0.00 37.90 4.70
6523 8273 2.103143 CGAAGAGCAGCGGACGAT 59.897 61.111 0.00 0.00 0.00 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.