Multiple sequence alignment - TraesCS2D01G323200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G323200 chr2D 100.000 2163 0 0 1 2163 414974441 414972279 0.000000e+00 3995.0
1 TraesCS2D01G323200 chr2D 100.000 1219 0 0 2386 3604 414972056 414970838 0.000000e+00 2252.0
2 TraesCS2D01G323200 chr2D 98.005 752 9 2 2853 3604 207537292 207538037 0.000000e+00 1301.0
3 TraesCS2D01G323200 chr2D 95.000 220 11 0 2634 2853 207537124 207537343 2.660000e-91 346.0
4 TraesCS2D01G323200 chr2D 91.954 87 7 0 1739 1825 78530092 78530006 4.890000e-24 122.0
5 TraesCS2D01G323200 chr2A 98.115 902 16 1 1262 2163 581964579 581963679 0.000000e+00 1570.0
6 TraesCS2D01G323200 chr2A 97.738 663 13 2 606 1267 581965625 581964964 0.000000e+00 1140.0
7 TraesCS2D01G323200 chr2A 92.586 580 16 4 1 574 581966426 581965868 0.000000e+00 808.0
8 TraesCS2D01G323200 chr2A 97.976 247 5 0 2386 2632 581963619 581963373 2.570000e-116 429.0
9 TraesCS2D01G323200 chr2A 98.551 69 1 0 546 614 581965872 581965804 4.890000e-24 122.0
10 TraesCS2D01G323200 chr2A 90.805 87 8 0 1739 1825 78811538 78811452 2.270000e-22 117.0
11 TraesCS2D01G323200 chr7D 98.005 752 14 1 2853 3604 537212298 537211548 0.000000e+00 1304.0
12 TraesCS2D01G323200 chr7D 95.075 467 20 1 1262 1725 576658757 576659223 0.000000e+00 732.0
13 TraesCS2D01G323200 chr7D 94.737 361 19 0 1800 2160 576661103 576661463 2.430000e-156 562.0
14 TraesCS2D01G323200 chr7D 97.590 249 6 0 2386 2634 576661528 576661776 9.250000e-116 427.0
15 TraesCS2D01G323200 chr7D 87.871 371 22 14 411 768 576657565 576657925 7.200000e-112 414.0
16 TraesCS2D01G323200 chr7D 83.015 471 40 18 804 1267 576657926 576658363 1.210000e-104 390.0
17 TraesCS2D01G323200 chr7D 95.000 220 9 2 2634 2853 537212464 537212247 9.580000e-91 344.0
18 TraesCS2D01G323200 chr7D 90.152 132 8 5 242 370 576657428 576657557 2.230000e-37 167.0
19 TraesCS2D01G323200 chr7D 81.116 233 21 12 2634 2853 66451382 66451160 8.010000e-37 165.0
20 TraesCS2D01G323200 chr3A 95.984 747 25 3 2861 3603 579035883 579036628 0.000000e+00 1208.0
21 TraesCS2D01G323200 chr4B 95.576 746 29 4 2861 3602 82668887 82669632 0.000000e+00 1192.0
22 TraesCS2D01G323200 chr4B 92.056 214 12 5 2630 2841 546117344 546117554 2.720000e-76 296.0
23 TraesCS2D01G323200 chr4B 89.610 77 8 0 1737 1813 299564272 299564196 8.240000e-17 99.0
24 TraesCS2D01G323200 chr7B 95.321 748 30 3 2861 3604 71579903 71580649 0.000000e+00 1182.0
25 TraesCS2D01G323200 chr7B 95.321 748 30 3 2861 3604 71581209 71581955 0.000000e+00 1182.0
26 TraesCS2D01G323200 chr7B 94.920 748 33 3 2861 3604 71582514 71583260 0.000000e+00 1166.0
27 TraesCS2D01G323200 chr1A 95.315 747 32 1 2861 3604 6652908 6652162 0.000000e+00 1182.0
28 TraesCS2D01G323200 chr1A 95.047 747 33 2 2861 3604 531595406 531596151 0.000000e+00 1171.0
29 TraesCS2D01G323200 chr1A 88.506 87 10 0 1739 1825 464804479 464804565 4.920000e-19 106.0
30 TraesCS2D01G323200 chr1A 87.805 82 10 0 1740 1821 402799217 402799298 2.960000e-16 97.1
31 TraesCS2D01G323200 chr1A 87.209 86 7 1 1743 1828 448923100 448923019 1.070000e-15 95.3
32 TraesCS2D01G323200 chr7A 90.153 914 67 18 1262 2160 668062710 668063615 0.000000e+00 1168.0
33 TraesCS2D01G323200 chr7A 95.902 244 10 0 2386 2629 668063680 668063923 2.610000e-106 396.0
34 TraesCS2D01G323200 chr7A 92.424 132 10 0 528 659 668060868 668060999 4.750000e-44 189.0
35 TraesCS2D01G323200 chr7A 88.506 87 10 0 666 752 668061714 668061800 4.920000e-19 106.0
36 TraesCS2D01G323200 chr7A 97.222 36 0 1 507 541 668060805 668060840 3.890000e-05 60.2
37 TraesCS2D01G323200 chr6D 90.574 488 38 4 1262 1741 466551297 466550810 1.090000e-179 640.0
38 TraesCS2D01G323200 chr6D 90.021 481 45 1 1264 1741 466544580 466545060 1.420000e-173 619.0
39 TraesCS2D01G323200 chr6D 88.470 477 55 0 1262 1738 67326212 67325736 8.680000e-161 577.0
40 TraesCS2D01G323200 chr6D 85.744 484 62 4 1262 1739 466527879 466527397 4.150000e-139 505.0
41 TraesCS2D01G323200 chr6D 92.262 336 22 2 1830 2163 67325715 67325382 1.170000e-129 473.0
42 TraesCS2D01G323200 chr6D 88.728 346 27 6 1825 2163 466527392 466527052 2.590000e-111 412.0
43 TraesCS2D01G323200 chr6D 90.000 230 19 2 2391 2620 67325315 67325090 9.790000e-76 294.0
44 TraesCS2D01G323200 chr6D 88.462 234 24 1 2389 2622 466550422 466550192 2.740000e-71 279.0
45 TraesCS2D01G323200 chr6D 87.815 238 24 2 2386 2621 466526990 466526756 1.270000e-69 274.0
46 TraesCS2D01G323200 chr6D 83.113 302 21 14 972 1267 466551956 466551679 7.730000e-62 248.0
47 TraesCS2D01G323200 chr6D 90.811 185 13 3 1086 1267 466543999 466544182 1.000000e-60 244.0
48 TraesCS2D01G323200 chr6D 75.974 462 47 33 10 454 466553135 466552721 2.860000e-41 180.0
49 TraesCS2D01G323200 chr6D 87.179 156 18 1 1114 1267 466528591 466528436 3.700000e-40 176.0
50 TraesCS2D01G323200 chr6D 96.875 96 3 0 2634 2729 436883879 436883784 1.040000e-35 161.0
51 TraesCS2D01G323200 chr6D 84.431 167 20 4 1103 1266 440015262 440015099 3.720000e-35 159.0
52 TraesCS2D01G323200 chr6D 86.441 118 8 5 472 586 439922659 439922547 4.890000e-24 122.0
53 TraesCS2D01G323200 chr6D 81.955 133 12 2 919 1051 466542068 466542188 6.370000e-18 102.0
54 TraesCS2D01G323200 chr6B 90.437 481 43 2 1264 1741 711665825 711666305 6.570000e-177 630.0
55 TraesCS2D01G323200 chr6B 89.754 488 42 4 1262 1741 711694466 711693979 5.110000e-173 617.0
56 TraesCS2D01G323200 chr6B 90.855 339 24 3 1830 2163 142098587 142098251 7.100000e-122 448.0
57 TraesCS2D01G323200 chr6B 92.434 304 23 0 1857 2160 711666320 711666623 5.530000e-118 435.0
58 TraesCS2D01G323200 chr6B 91.857 307 25 0 1857 2163 711693962 711693656 2.570000e-116 429.0
59 TraesCS2D01G323200 chr6B 82.670 352 24 14 919 1267 711665109 711665426 9.860000e-71 278.0
60 TraesCS2D01G323200 chr6B 87.764 237 26 1 2386 2622 711693594 711693361 1.270000e-69 274.0
61 TraesCS2D01G323200 chr6B 87.179 234 27 1 2387 2620 142098188 142097958 2.760000e-66 263.0
62 TraesCS2D01G323200 chr6B 83.056 301 24 12 973 1267 711695142 711694863 7.730000e-62 248.0
63 TraesCS2D01G323200 chr6B 86.441 118 8 5 472 586 665162801 665162689 4.890000e-24 122.0
64 TraesCS2D01G323200 chr6B 87.838 74 8 1 156 228 711695587 711695514 6.410000e-13 86.1
65 TraesCS2D01G323200 chr6B 83.696 92 9 6 144 231 711664621 711664710 8.290000e-12 82.4
66 TraesCS2D01G323200 chr6B 82.000 100 10 5 475 571 665422166 665422072 1.070000e-10 78.7
67 TraesCS2D01G323200 chr6A 89.474 342 28 5 1826 2163 84698844 84698507 3.330000e-115 425.0
68 TraesCS2D01G323200 chr6A 88.517 209 21 1 2386 2594 84698445 84698240 2.150000e-62 250.0
69 TraesCS2D01G323200 chr6A 84.545 220 26 6 2634 2853 4661144 4661355 1.010000e-50 211.0
70 TraesCS2D01G323200 chr6A 82.022 178 25 6 1093 1266 588410953 588410779 1.040000e-30 145.0
71 TraesCS2D01G323200 chr2B 86.607 224 23 5 2630 2852 20604312 20604095 1.290000e-59 241.0
72 TraesCS2D01G323200 chr2B 91.954 87 7 0 1739 1825 121669477 121669391 4.890000e-24 122.0
73 TraesCS2D01G323200 chr2B 83.908 87 10 1 468 554 246570439 246570521 2.980000e-11 80.5
74 TraesCS2D01G323200 chr3B 86.607 224 20 8 2630 2853 773323283 773323496 4.650000e-59 239.0
75 TraesCS2D01G323200 chr3B 92.308 143 11 0 2634 2776 10239979 10240121 1.700000e-48 204.0
76 TraesCS2D01G323200 chr5A 76.111 540 64 26 731 1265 46959223 46959702 4.680000e-54 222.0
77 TraesCS2D01G323200 chr4D 96.875 96 3 0 2634 2729 31537724 31537819 1.040000e-35 161.0
78 TraesCS2D01G323200 chr4D 95.098 102 5 0 2628 2729 410646852 410646953 1.040000e-35 161.0
79 TraesCS2D01G323200 chr4D 94.286 105 4 2 2626 2730 440274771 440274669 3.720000e-35 159.0
80 TraesCS2D01G323200 chr4D 88.889 99 10 1 1728 1825 268071273 268071175 1.760000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G323200 chr2D 414970838 414974441 3603 True 3123.500000 3995 100.000000 1 3604 2 chr2D.!!$R2 3603
1 TraesCS2D01G323200 chr2D 207537124 207538037 913 False 823.500000 1301 96.502500 2634 3604 2 chr2D.!!$F1 970
2 TraesCS2D01G323200 chr2A 581963373 581966426 3053 True 813.800000 1570 96.993200 1 2632 5 chr2A.!!$R2 2631
3 TraesCS2D01G323200 chr7D 537211548 537212464 916 True 824.000000 1304 96.502500 2634 3604 2 chr7D.!!$R2 970
4 TraesCS2D01G323200 chr7D 576657428 576661776 4348 False 448.666667 732 91.406667 242 2634 6 chr7D.!!$F1 2392
5 TraesCS2D01G323200 chr3A 579035883 579036628 745 False 1208.000000 1208 95.984000 2861 3603 1 chr3A.!!$F1 742
6 TraesCS2D01G323200 chr4B 82668887 82669632 745 False 1192.000000 1192 95.576000 2861 3602 1 chr4B.!!$F1 741
7 TraesCS2D01G323200 chr7B 71579903 71583260 3357 False 1176.666667 1182 95.187333 2861 3604 3 chr7B.!!$F1 743
8 TraesCS2D01G323200 chr1A 6652162 6652908 746 True 1182.000000 1182 95.315000 2861 3604 1 chr1A.!!$R1 743
9 TraesCS2D01G323200 chr1A 531595406 531596151 745 False 1171.000000 1171 95.047000 2861 3604 1 chr1A.!!$F3 743
10 TraesCS2D01G323200 chr7A 668060805 668063923 3118 False 383.840000 1168 92.841400 507 2629 5 chr7A.!!$F1 2122
11 TraesCS2D01G323200 chr6D 67325090 67326212 1122 True 448.000000 577 90.244000 1262 2620 3 chr6D.!!$R4 1358
12 TraesCS2D01G323200 chr6D 466526756 466528591 1835 True 341.750000 505 87.366500 1114 2621 4 chr6D.!!$R5 1507
13 TraesCS2D01G323200 chr6D 466550192 466553135 2943 True 336.750000 640 84.530750 10 2622 4 chr6D.!!$R6 2612
14 TraesCS2D01G323200 chr6D 466542068 466545060 2992 False 321.666667 619 87.595667 919 1741 3 chr6D.!!$F1 822
15 TraesCS2D01G323200 chr6B 711664621 711666623 2002 False 356.350000 630 87.309250 144 2160 4 chr6B.!!$F1 2016
16 TraesCS2D01G323200 chr6B 142097958 142098587 629 True 355.500000 448 89.017000 1830 2620 2 chr6B.!!$R3 790
17 TraesCS2D01G323200 chr6B 711693361 711695587 2226 True 330.820000 617 88.053800 156 2622 5 chr6B.!!$R4 2466
18 TraesCS2D01G323200 chr6A 84698240 84698844 604 True 337.500000 425 88.995500 1826 2594 2 chr6A.!!$R2 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 2122 1.076192 TCGGAGGAGTAGGAAGGGC 60.076 63.158 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2757 8433 0.466739 GGTGGGTTTTGGTTCTCCGT 60.467 55.0 0.0 0.0 36.3 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 92 3.249189 TGCCACCACCACTCTCCC 61.249 66.667 0.00 0.00 0.00 4.30
246 321 3.396570 CGGTCCCCTACCCCACAC 61.397 72.222 0.00 0.00 46.62 3.82
247 322 3.013327 GGTCCCCTACCCCACACC 61.013 72.222 0.00 0.00 43.16 4.16
248 323 2.124312 GTCCCCTACCCCACACCT 59.876 66.667 0.00 0.00 0.00 4.00
249 324 2.124085 TCCCCTACCCCACACCTG 59.876 66.667 0.00 0.00 0.00 4.00
250 325 3.728373 CCCCTACCCCACACCTGC 61.728 72.222 0.00 0.00 0.00 4.85
251 326 3.728373 CCCTACCCCACACCTGCC 61.728 72.222 0.00 0.00 0.00 4.85
252 327 4.096003 CCTACCCCACACCTGCCG 62.096 72.222 0.00 0.00 0.00 5.69
394 494 4.796231 CCTTCGTCGCCACCTCCG 62.796 72.222 0.00 0.00 0.00 4.63
541 690 5.920840 TCTGTCTGTTGAGAAGTTGTAATCG 59.079 40.000 0.00 0.00 0.00 3.34
771 2122 1.076192 TCGGAGGAGTAGGAAGGGC 60.076 63.158 0.00 0.00 0.00 5.19
1032 2459 0.042448 GACGTCACCGCAGAAACAAC 60.042 55.000 11.55 0.00 37.70 3.32
1122 4353 5.984323 ACGAAAGGTTCTTCTAAAGACTGAC 59.016 40.000 0.00 0.00 37.23 3.51
1133 4366 9.477484 TCTTCTAAAGACTGACTATTTGTTGTC 57.523 33.333 0.00 0.00 34.78 3.18
1315 5116 3.366883 GCGCAATATGAGGTTTGGTGAAA 60.367 43.478 0.30 0.00 0.00 2.69
1316 5117 4.414852 CGCAATATGAGGTTTGGTGAAAG 58.585 43.478 0.00 0.00 0.00 2.62
1317 5118 4.082787 CGCAATATGAGGTTTGGTGAAAGT 60.083 41.667 0.00 0.00 0.00 2.66
1564 5365 5.407502 GTTTTGTACCACAGCTTTCAAAGT 58.592 37.500 0.00 0.00 0.00 2.66
1625 5426 4.588951 TCTTGAGTTAAGTCAGCTCCTTGA 59.411 41.667 12.62 2.88 37.65 3.02
1636 5437 4.813697 GTCAGCTCCTTGATAATGTTCCTC 59.186 45.833 0.00 0.00 0.00 3.71
1766 7238 4.141801 CCCTCCGTTCCATATTAAGTGTCA 60.142 45.833 0.00 0.00 0.00 3.58
1864 7535 2.289133 GGTCTTCTCCACCAGTTGAGAC 60.289 54.545 1.30 0.00 37.35 3.36
2160 7836 1.070786 GGCAGACGTGGAGTGGAAA 59.929 57.895 0.00 0.00 0.00 3.13
2594 8270 1.026182 TGCCTGCTATGGTTCGCTTG 61.026 55.000 0.00 0.00 0.00 4.01
2686 8362 2.738314 CGTTCCGGGTTTATTTTCGTCT 59.262 45.455 0.00 0.00 0.00 4.18
2783 8459 4.470602 AGAACCAAAACCCACCTTAGAAG 58.529 43.478 0.00 0.00 0.00 2.85
2811 8487 4.069232 CCCTCGCACGCCAGAGAA 62.069 66.667 3.58 0.00 36.65 2.87
2812 8488 2.185350 CCTCGCACGCCAGAGAAT 59.815 61.111 3.58 0.00 36.65 2.40
2813 8489 1.880340 CCTCGCACGCCAGAGAATC 60.880 63.158 3.58 0.00 36.65 2.52
2814 8490 2.202610 TCGCACGCCAGAGAATCG 60.203 61.111 0.00 0.00 42.67 3.34
2815 8491 2.202610 CGCACGCCAGAGAATCGA 60.203 61.111 0.00 0.00 42.67 3.59
2816 8492 1.805539 CGCACGCCAGAGAATCGAA 60.806 57.895 0.00 0.00 42.67 3.71
2817 8493 1.710339 GCACGCCAGAGAATCGAAC 59.290 57.895 0.00 0.00 42.67 3.95
2818 8494 1.991430 CACGCCAGAGAATCGAACG 59.009 57.895 0.00 0.00 42.67 3.95
2819 8495 0.456142 CACGCCAGAGAATCGAACGA 60.456 55.000 0.00 0.00 42.67 3.85
2820 8496 0.456312 ACGCCAGAGAATCGAACGAC 60.456 55.000 0.00 0.00 42.67 4.34
2821 8497 0.456142 CGCCAGAGAATCGAACGACA 60.456 55.000 0.00 0.00 42.67 4.35
2822 8498 1.710013 GCCAGAGAATCGAACGACAA 58.290 50.000 0.00 0.00 42.67 3.18
2823 8499 2.066262 GCCAGAGAATCGAACGACAAA 58.934 47.619 0.00 0.00 42.67 2.83
2824 8500 2.478894 GCCAGAGAATCGAACGACAAAA 59.521 45.455 0.00 0.00 42.67 2.44
2825 8501 3.059188 GCCAGAGAATCGAACGACAAAAA 60.059 43.478 0.00 0.00 42.67 1.94
2846 8522 4.541085 AACCTACGAAGAAAAACCAACG 57.459 40.909 0.00 0.00 0.00 4.10
2847 8523 3.795877 ACCTACGAAGAAAAACCAACGA 58.204 40.909 0.00 0.00 0.00 3.85
2848 8524 4.190772 ACCTACGAAGAAAAACCAACGAA 58.809 39.130 0.00 0.00 0.00 3.85
2849 8525 4.635324 ACCTACGAAGAAAAACCAACGAAA 59.365 37.500 0.00 0.00 0.00 3.46
2850 8526 5.123661 ACCTACGAAGAAAAACCAACGAAAA 59.876 36.000 0.00 0.00 0.00 2.29
2851 8527 6.028987 CCTACGAAGAAAAACCAACGAAAAA 58.971 36.000 0.00 0.00 0.00 1.94
2938 8615 3.009714 GGGAACGAGGCTCCCCTT 61.010 66.667 17.32 3.65 46.18 3.95
3137 10121 1.766496 CCACCCCACCATACGTAGATT 59.234 52.381 0.08 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 127 2.043248 GGAGCAGGACGGGAGGTA 60.043 66.667 0.00 0.0 0.00 3.08
394 494 0.961753 GGCATATTAACCCAGGCAGC 59.038 55.000 0.00 0.0 0.00 5.25
404 507 2.051334 AACGCAGCCAGGCATATTAA 57.949 45.000 15.80 0.0 0.00 1.40
541 690 1.503347 AGAGGAGAGGAAGAGGATCCC 59.497 57.143 8.55 0.0 40.59 3.85
1032 2459 8.696175 AGAAACAAAACAGAAACAAAACTTACG 58.304 29.630 0.00 0.0 0.00 3.18
1122 4353 5.184864 TGCATTTACCTGGGACAACAAATAG 59.815 40.000 0.00 0.0 38.70 1.73
1133 4366 2.513753 TCTGTGTTGCATTTACCTGGG 58.486 47.619 0.00 0.0 0.00 4.45
1315 5116 3.181329 TGAGGATGTTGGGTATGTCACT 58.819 45.455 0.00 0.0 0.00 3.41
1316 5117 3.535561 CTGAGGATGTTGGGTATGTCAC 58.464 50.000 0.00 0.0 0.00 3.67
1317 5118 2.092968 GCTGAGGATGTTGGGTATGTCA 60.093 50.000 0.00 0.0 0.00 3.58
1564 5365 4.219725 GGTGCCAATTTTAGTAAGCCTCAA 59.780 41.667 0.00 0.0 0.00 3.02
1636 5437 1.674441 CAGATGCAGGTTGCCTATGTG 59.326 52.381 0.00 0.0 44.23 3.21
2465 8141 1.442769 CACAGCGCAGACATACCTTT 58.557 50.000 11.47 0.0 0.00 3.11
2594 8270 6.295039 TCTCTTTTTGTCAATTACGTCCAC 57.705 37.500 0.00 0.0 0.00 4.02
2686 8362 1.970092 AAACCGGACGAAAATGGTGA 58.030 45.000 9.46 0.0 34.26 4.02
2710 8386 2.203788 AGGTGGGAGCGAGGACAA 60.204 61.111 0.00 0.0 0.00 3.18
2711 8387 2.680352 GAGGTGGGAGCGAGGACA 60.680 66.667 0.00 0.0 0.00 4.02
2718 8394 3.403558 GAGGTGGGAGGTGGGAGC 61.404 72.222 0.00 0.0 0.00 4.70
2757 8433 0.466739 GGTGGGTTTTGGTTCTCCGT 60.467 55.000 0.00 0.0 36.30 4.69
2822 8498 5.801444 CGTTGGTTTTTCTTCGTAGGTTTTT 59.199 36.000 0.00 0.0 0.00 1.94
2823 8499 5.123661 TCGTTGGTTTTTCTTCGTAGGTTTT 59.876 36.000 0.00 0.0 0.00 2.43
2824 8500 4.635324 TCGTTGGTTTTTCTTCGTAGGTTT 59.365 37.500 0.00 0.0 0.00 3.27
2825 8501 4.190772 TCGTTGGTTTTTCTTCGTAGGTT 58.809 39.130 0.00 0.0 0.00 3.50
2826 8502 3.795877 TCGTTGGTTTTTCTTCGTAGGT 58.204 40.909 0.00 0.0 0.00 3.08
2827 8503 4.799419 TTCGTTGGTTTTTCTTCGTAGG 57.201 40.909 0.00 0.0 0.00 3.18
2848 8524 2.096417 CGTTCGATTCTCTGGCGTTTTT 60.096 45.455 0.00 0.0 0.00 1.94
2849 8525 1.459592 CGTTCGATTCTCTGGCGTTTT 59.540 47.619 0.00 0.0 0.00 2.43
2850 8526 1.068474 CGTTCGATTCTCTGGCGTTT 58.932 50.000 0.00 0.0 0.00 3.60
2851 8527 0.242825 TCGTTCGATTCTCTGGCGTT 59.757 50.000 0.00 0.0 0.00 4.84
2852 8528 0.456312 GTCGTTCGATTCTCTGGCGT 60.456 55.000 0.00 0.0 0.00 5.68
2853 8529 0.456142 TGTCGTTCGATTCTCTGGCG 60.456 55.000 0.00 0.0 0.00 5.69
2854 8530 1.710013 TTGTCGTTCGATTCTCTGGC 58.290 50.000 0.00 0.0 0.00 4.85
2855 8531 4.725556 TTTTTGTCGTTCGATTCTCTGG 57.274 40.909 0.00 0.0 0.00 3.86
2938 8615 2.301870 ACCCTAGCGTTGTTTGAGATCA 59.698 45.455 0.00 0.0 0.00 2.92
3079 10063 4.011517 GAGACGGAACCGCCCCAA 62.012 66.667 13.32 0.0 44.19 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.