Multiple sequence alignment - TraesCS2D01G321700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G321700 chr2D 100.000 3545 0 0 1 3545 413272620 413276164 0.000000e+00 6547.0
1 TraesCS2D01G321700 chr2D 87.923 679 74 4 1876 2546 413265144 413265822 0.000000e+00 793.0
2 TraesCS2D01G321700 chr2D 86.850 654 77 1 1903 2547 413290559 413291212 0.000000e+00 723.0
3 TraesCS2D01G321700 chr2D 77.086 659 115 23 1920 2550 413353539 413354189 7.280000e-92 348.0
4 TraesCS2D01G321700 chr2D 80.833 360 57 10 999 1350 413288619 413288974 4.510000e-69 272.0
5 TraesCS2D01G321700 chr2D 80.441 363 50 11 1428 1778 413289224 413289577 1.260000e-64 257.0
6 TraesCS2D01G321700 chr2D 82.083 240 38 3 1010 1244 413263979 413264218 2.160000e-47 200.0
7 TraesCS2D01G321700 chr2D 90.291 103 8 2 1666 1767 413724763 413724864 2.220000e-27 134.0
8 TraesCS2D01G321700 chr2A 93.884 2747 110 26 1 2733 580280237 580282939 0.000000e+00 4089.0
9 TraesCS2D01G321700 chr2A 86.892 679 81 4 1876 2546 580253337 580254015 0.000000e+00 754.0
10 TraesCS2D01G321700 chr2A 87.442 645 81 0 1903 2547 580324425 580325069 0.000000e+00 743.0
11 TraesCS2D01G321700 chr2A 93.165 278 9 3 3201 3476 580317419 580317688 1.980000e-107 399.0
12 TraesCS2D01G321700 chr2A 92.340 235 15 3 2742 2975 580283140 580283372 7.340000e-87 331.0
13 TraesCS2D01G321700 chr2A 93.085 188 9 2 3009 3196 580283374 580283557 4.510000e-69 272.0
14 TraesCS2D01G321700 chr2A 81.356 354 48 11 1428 1770 580323090 580323436 4.510000e-69 272.0
15 TraesCS2D01G321700 chr2A 80.000 360 60 10 999 1350 580322474 580322829 4.540000e-64 255.0
16 TraesCS2D01G321700 chr2A 82.083 240 37 5 1010 1244 580252137 580252375 2.160000e-47 200.0
17 TraesCS2D01G321700 chr2A 94.690 113 6 0 3433 3545 580317687 580317799 3.640000e-40 176.0
18 TraesCS2D01G321700 chr2A 89.109 101 8 3 1668 1767 580760293 580760391 4.810000e-24 122.0
19 TraesCS2D01G321700 chr2B 93.885 1570 69 11 619 2175 486741124 486742679 0.000000e+00 2342.0
20 TraesCS2D01G321700 chr2B 87.482 679 77 4 1876 2546 486588766 486589444 0.000000e+00 776.0
21 TraesCS2D01G321700 chr2B 87.141 661 74 3 1903 2553 486770881 486771540 0.000000e+00 739.0
22 TraesCS2D01G321700 chr2B 92.442 516 28 5 119 634 486735232 486735736 0.000000e+00 726.0
23 TraesCS2D01G321700 chr2B 94.030 201 10 1 3343 3543 486762618 486762816 1.600000e-78 303.0
24 TraesCS2D01G321700 chr2B 80.362 387 55 14 1396 1770 486769386 486769763 1.250000e-69 274.0
25 TraesCS2D01G321700 chr2B 89.202 213 12 4 3145 3347 486753629 486753840 4.540000e-64 255.0
26 TraesCS2D01G321700 chr2B 91.477 176 12 2 2741 2914 486742690 486742864 4.570000e-59 239.0
27 TraesCS2D01G321700 chr2B 83.913 230 33 3 1010 1236 486584936 486585164 2.140000e-52 217.0
28 TraesCS2D01G321700 chr2B 77.901 362 65 10 999 1350 486768808 486769164 9.970000e-51 211.0
29 TraesCS2D01G321700 chr2B 92.632 95 6 1 26 119 486733290 486733384 6.170000e-28 135.0
30 TraesCS2D01G321700 chr2B 88.350 103 10 2 1666 1767 486965866 486965967 4.810000e-24 122.0
31 TraesCS2D01G321700 chrUn 94.030 201 10 1 3343 3543 477167840 477168038 1.600000e-78 303.0
32 TraesCS2D01G321700 chr7D 92.982 57 4 0 1108 1164 112866857 112866913 2.270000e-12 84.2
33 TraesCS2D01G321700 chr5D 90.000 50 5 0 271 320 464564542 464564493 8.210000e-07 65.8
34 TraesCS2D01G321700 chr5B 81.333 75 13 1 247 320 571752057 571752131 3.820000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G321700 chr2D 413272620 413276164 3544 False 6547.000000 6547 100.000000 1 3545 1 chr2D.!!$F1 3544
1 TraesCS2D01G321700 chr2D 413263979 413265822 1843 False 496.500000 793 85.003000 1010 2546 2 chr2D.!!$F4 1536
2 TraesCS2D01G321700 chr2D 413288619 413291212 2593 False 417.333333 723 82.708000 999 2547 3 chr2D.!!$F5 1548
3 TraesCS2D01G321700 chr2D 413353539 413354189 650 False 348.000000 348 77.086000 1920 2550 1 chr2D.!!$F2 630
4 TraesCS2D01G321700 chr2A 580280237 580283557 3320 False 1564.000000 4089 93.103000 1 3196 3 chr2A.!!$F3 3195
5 TraesCS2D01G321700 chr2A 580252137 580254015 1878 False 477.000000 754 84.487500 1010 2546 2 chr2A.!!$F2 1536
6 TraesCS2D01G321700 chr2A 580322474 580325069 2595 False 423.333333 743 82.932667 999 2547 3 chr2A.!!$F5 1548
7 TraesCS2D01G321700 chr2B 486741124 486742864 1740 False 1290.500000 2342 92.681000 619 2914 2 chr2B.!!$F6 2295
8 TraesCS2D01G321700 chr2B 486584936 486589444 4508 False 496.500000 776 85.697500 1010 2546 2 chr2B.!!$F4 1536
9 TraesCS2D01G321700 chr2B 486733290 486735736 2446 False 430.500000 726 92.537000 26 634 2 chr2B.!!$F5 608
10 TraesCS2D01G321700 chr2B 486768808 486771540 2732 False 408.000000 739 81.801333 999 2553 3 chr2B.!!$F7 1554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 2114 0.603065 GACCCATTTTGAGGTGCACC 59.397 55.000 29.22 29.22 36.17 5.01 F
516 2368 1.071385 CCTGACAAGACTGGCTGACTT 59.929 52.381 3.52 3.52 31.17 3.01 F
1208 3079 1.005804 GCCGCTTGCTTCTTGCTTTC 61.006 55.000 0.00 0.00 43.37 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1179 3043 0.326927 AGCAAGCGGCCTTACCTTTA 59.673 50.0 0.00 0.0 46.50 1.85 R
2370 8340 0.391228 TGTCGTTGCTGAGCCAGTTA 59.609 50.0 0.23 0.0 33.43 2.24 R
2916 9088 0.469331 CGTAGGCTCCCCTCACCATA 60.469 60.0 0.00 0.0 41.75 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
262 2114 0.603065 GACCCATTTTGAGGTGCACC 59.397 55.000 29.22 29.22 36.17 5.01
348 2200 6.200854 GTCATATGTTCTCGCAATGTGATACA 59.799 38.462 12.16 12.16 0.00 2.29
433 2285 6.352516 AGAGTGATCCCATTCAGAATTACAC 58.647 40.000 0.00 0.00 32.14 2.90
498 2350 2.803030 ATCATGAGTTTGAGCAGCCT 57.197 45.000 0.09 0.00 0.00 4.58
516 2368 1.071385 CCTGACAAGACTGGCTGACTT 59.929 52.381 3.52 3.52 31.17 3.01
547 2399 8.796475 TCATCTCGAGATTGACAATGTATATCA 58.204 33.333 25.25 0.00 31.21 2.15
551 2403 9.846248 CTCGAGATTGACAATGTATATCATGTA 57.154 33.333 6.58 0.00 36.81 2.29
663 2515 7.435192 GTGAGACCTAACAAAATTGGTTTCTTG 59.565 37.037 0.00 0.00 35.52 3.02
973 2832 7.450634 TCGATAGTAGCCATACAATACCTTCTT 59.549 37.037 0.00 0.00 34.07 2.52
1179 3043 3.648067 TCTCTGTCCTTGTTCCTGATTGT 59.352 43.478 0.00 0.00 0.00 2.71
1205 3076 3.368571 GGCCGCTTGCTTCTTGCT 61.369 61.111 0.00 0.00 43.37 3.91
1206 3077 2.647297 GCCGCTTGCTTCTTGCTT 59.353 55.556 0.00 0.00 43.37 3.91
1207 3078 1.006922 GCCGCTTGCTTCTTGCTTT 60.007 52.632 0.00 0.00 43.37 3.51
1208 3079 1.005804 GCCGCTTGCTTCTTGCTTTC 61.006 55.000 0.00 0.00 43.37 2.62
1229 3101 4.331968 TCTTTCAAGAACCCATACGCATT 58.668 39.130 0.00 0.00 30.73 3.56
1448 3638 2.816601 ATCAGAAAGGCGCTGCTGCT 62.817 55.000 14.03 0.00 36.97 4.24
1843 6709 5.484173 TCGCGCTTTGATTAATCTTCATT 57.516 34.783 16.24 0.00 0.00 2.57
1845 6711 7.189693 TCGCGCTTTGATTAATCTTCATTAT 57.810 32.000 16.24 0.00 0.00 1.28
1908 7843 1.135689 ACTTGTTTTCGCGGATCATGC 60.136 47.619 6.13 0.00 0.00 4.06
2370 8340 2.262915 GTGCAGCTCTACACCGCT 59.737 61.111 0.00 0.00 36.83 5.52
2475 8445 4.404098 GCCGTCAACCACCCCGAT 62.404 66.667 0.00 0.00 0.00 4.18
2489 8459 1.870901 CCGATTTCCCGTCGTCGAC 60.871 63.158 15.51 15.51 39.71 4.20
2578 8551 6.546403 AGATGCATGCTTCACTTAATTGATCT 59.454 34.615 29.04 16.58 0.00 2.75
2584 8557 6.946340 TGCTTCACTTAATTGATCTGTCCTA 58.054 36.000 0.00 0.00 0.00 2.94
2649 8622 4.941263 CACGGGATGAACCATCTTTTCTTA 59.059 41.667 6.86 0.00 40.39 2.10
2652 8625 6.992715 ACGGGATGAACCATCTTTTCTTATAG 59.007 38.462 6.86 0.00 40.39 1.31
2667 8640 9.930693 CTTTTCTTATAGTCTGTACCACTTCTT 57.069 33.333 0.19 0.00 0.00 2.52
2669 8642 9.924650 TTTCTTATAGTCTGTACCACTTCTTTC 57.075 33.333 0.19 0.00 0.00 2.62
2690 8668 4.056740 TCTTTACAAAACGGACGCATACA 58.943 39.130 0.00 0.00 0.00 2.29
2715 8693 6.729690 TTTGCCTCATCCATTAAATAAGGG 57.270 37.500 0.00 0.00 38.42 3.95
2815 8987 1.444836 CGGCGATGACCCAAAGTTTA 58.555 50.000 0.00 0.00 0.00 2.01
2823 8995 5.220854 CGATGACCCAAAGTTTAGCCTTATG 60.221 44.000 0.00 0.00 0.00 1.90
2826 8998 6.544650 TGACCCAAAGTTTAGCCTTATGTTA 58.455 36.000 0.00 0.00 0.00 2.41
2865 9037 2.414994 TGGACGGTAGAGTAGACTGG 57.585 55.000 0.00 0.00 0.00 4.00
2888 9060 4.630069 GTGACACAAGACCGTAGCATTTAT 59.370 41.667 0.00 0.00 0.00 1.40
2891 9063 6.205853 TGACACAAGACCGTAGCATTTATTTT 59.794 34.615 0.00 0.00 0.00 1.82
2932 9104 0.399233 GAGTATGGTGAGGGGAGCCT 60.399 60.000 0.00 0.00 0.00 4.58
2939 9112 0.323957 GTGAGGGGAGCCTACGTTTT 59.676 55.000 0.00 0.00 0.00 2.43
2975 9148 2.501316 TGTCTCGGACATGTTGATCCAT 59.499 45.455 0.00 0.00 37.67 3.41
2976 9149 3.126831 GTCTCGGACATGTTGATCCATC 58.873 50.000 0.00 0.00 34.35 3.51
2977 9150 2.765699 TCTCGGACATGTTGATCCATCA 59.234 45.455 0.00 0.00 34.35 3.07
2978 9151 3.197549 TCTCGGACATGTTGATCCATCAA 59.802 43.478 0.00 0.00 43.94 2.57
2979 9152 6.200326 GTCTCGGACATGTTGATCCATCAAT 61.200 44.000 0.00 0.00 39.40 2.57
2980 9153 7.623963 GTCTCGGACATGTTGATCCATCAATT 61.624 42.308 0.00 0.00 39.40 2.32
2981 9154 9.313314 GTCTCGGACATGTTGATCCATCAATTC 62.313 44.444 0.00 1.38 39.40 2.17
3033 9206 2.117257 TCGTTGTTGTCGAGGTGGA 58.883 52.632 0.00 0.00 33.38 4.02
3041 9214 1.052124 TGTCGAGGTGGACCCAAACT 61.052 55.000 0.00 0.00 36.07 2.66
3095 9268 7.967908 ACCGATATTTGAAGAAGATATGTCCT 58.032 34.615 0.00 0.00 0.00 3.85
3097 9270 7.332926 CCGATATTTGAAGAAGATATGTCCTGG 59.667 40.741 0.00 0.00 0.00 4.45
3107 9280 3.465210 AGATATGTCCTGGAGACTCCTCA 59.535 47.826 22.14 15.10 46.46 3.86
3117 9290 4.211125 TGGAGACTCCTCAGCTTACATAG 58.789 47.826 22.14 0.00 41.20 2.23
3157 9330 1.337118 GCCACCCACATTTCTCCAAA 58.663 50.000 0.00 0.00 0.00 3.28
3164 9337 6.263168 CCACCCACATTTCTCCAAATCTATAC 59.737 42.308 0.00 0.00 28.97 1.47
3177 9350 2.806608 TCTATACGCGGTCCAAATCC 57.193 50.000 12.47 0.00 0.00 3.01
3196 9369 7.655328 CCAAATCCAGTTTTGTATTGCTAACAA 59.345 33.333 0.00 0.00 36.26 2.83
3198 9371 8.761575 AATCCAGTTTTGTATTGCTAACAATG 57.238 30.769 1.52 0.00 46.08 2.82
3199 9372 6.155827 TCCAGTTTTGTATTGCTAACAATGC 58.844 36.000 1.52 0.98 46.08 3.56
3226 9399 2.351706 AAAAACTTACGAGGTGCCCA 57.648 45.000 0.00 0.00 0.00 5.36
3227 9400 2.351706 AAAACTTACGAGGTGCCCAA 57.648 45.000 0.00 0.00 0.00 4.12
3228 9401 1.892209 AAACTTACGAGGTGCCCAAG 58.108 50.000 0.00 0.00 0.00 3.61
3229 9402 0.605589 AACTTACGAGGTGCCCAAGC 60.606 55.000 0.00 0.00 40.48 4.01
3230 9403 1.745489 CTTACGAGGTGCCCAAGCC 60.745 63.158 0.00 0.00 38.69 4.35
3231 9404 2.185310 CTTACGAGGTGCCCAAGCCT 62.185 60.000 0.00 0.00 38.69 4.58
3232 9405 1.774894 TTACGAGGTGCCCAAGCCTT 61.775 55.000 0.00 0.00 38.69 4.35
3233 9406 1.774894 TACGAGGTGCCCAAGCCTTT 61.775 55.000 0.00 0.00 38.69 3.11
3234 9407 2.335712 CGAGGTGCCCAAGCCTTTC 61.336 63.158 0.00 0.00 38.69 2.62
3235 9408 1.228552 GAGGTGCCCAAGCCTTTCA 60.229 57.895 0.00 0.00 38.69 2.69
3236 9409 0.613012 GAGGTGCCCAAGCCTTTCAT 60.613 55.000 0.00 0.00 38.69 2.57
3237 9410 0.704076 AGGTGCCCAAGCCTTTCATA 59.296 50.000 0.00 0.00 38.69 2.15
3238 9411 0.817654 GGTGCCCAAGCCTTTCATAC 59.182 55.000 0.00 0.00 38.69 2.39
3239 9412 0.817654 GTGCCCAAGCCTTTCATACC 59.182 55.000 0.00 0.00 38.69 2.73
3240 9413 0.679640 TGCCCAAGCCTTTCATACCG 60.680 55.000 0.00 0.00 38.69 4.02
3241 9414 2.004808 GCCCAAGCCTTTCATACCGC 62.005 60.000 0.00 0.00 0.00 5.68
3242 9415 1.714899 CCCAAGCCTTTCATACCGCG 61.715 60.000 0.00 0.00 0.00 6.46
3243 9416 1.714899 CCAAGCCTTTCATACCGCGG 61.715 60.000 26.86 26.86 0.00 6.46
3244 9417 0.742990 CAAGCCTTTCATACCGCGGA 60.743 55.000 35.90 16.57 0.00 5.54
3245 9418 0.462047 AAGCCTTTCATACCGCGGAG 60.462 55.000 35.90 20.98 0.00 4.63
3264 9437 3.955291 CTCATGGGTGAGCGAGTAG 57.045 57.895 0.00 0.00 44.86 2.57
3265 9438 0.249238 CTCATGGGTGAGCGAGTAGC 60.249 60.000 0.00 0.00 44.86 3.58
3276 9449 3.164977 GAGTAGCCCCCAGCCCTC 61.165 72.222 0.00 0.00 45.47 4.30
3283 9456 3.252284 CCCCAGCCCTCGCCATAT 61.252 66.667 0.00 0.00 34.57 1.78
3284 9457 2.033141 CCCAGCCCTCGCCATATG 59.967 66.667 0.00 0.00 34.57 1.78
3285 9458 2.670934 CCAGCCCTCGCCATATGC 60.671 66.667 0.00 0.00 34.57 3.14
3286 9459 2.429058 CAGCCCTCGCCATATGCT 59.571 61.111 0.00 0.00 38.05 3.79
3287 9460 1.228063 CAGCCCTCGCCATATGCTT 60.228 57.895 0.00 0.00 38.05 3.91
3288 9461 1.072159 AGCCCTCGCCATATGCTTC 59.928 57.895 0.00 0.00 38.05 3.86
3289 9462 1.968540 GCCCTCGCCATATGCTTCC 60.969 63.158 0.00 0.00 38.05 3.46
3290 9463 1.451504 CCCTCGCCATATGCTTCCA 59.548 57.895 0.00 0.00 38.05 3.53
3291 9464 0.179020 CCCTCGCCATATGCTTCCAA 60.179 55.000 0.00 0.00 38.05 3.53
3292 9465 1.233019 CCTCGCCATATGCTTCCAAG 58.767 55.000 0.00 0.00 38.05 3.61
3293 9466 1.475751 CCTCGCCATATGCTTCCAAGT 60.476 52.381 0.00 0.00 38.05 3.16
3294 9467 1.600957 CTCGCCATATGCTTCCAAGTG 59.399 52.381 0.00 0.00 38.05 3.16
3295 9468 1.209261 TCGCCATATGCTTCCAAGTGA 59.791 47.619 0.00 0.00 38.05 3.41
3296 9469 2.158769 TCGCCATATGCTTCCAAGTGAT 60.159 45.455 0.00 0.00 38.05 3.06
3297 9470 3.070878 TCGCCATATGCTTCCAAGTGATA 59.929 43.478 0.00 0.00 38.05 2.15
3298 9471 3.814842 CGCCATATGCTTCCAAGTGATAA 59.185 43.478 0.00 0.00 38.05 1.75
3299 9472 4.456911 CGCCATATGCTTCCAAGTGATAAT 59.543 41.667 0.00 0.00 38.05 1.28
3300 9473 5.618418 CGCCATATGCTTCCAAGTGATAATG 60.618 44.000 0.00 0.00 38.05 1.90
3301 9474 5.336213 GCCATATGCTTCCAAGTGATAATGG 60.336 44.000 0.00 0.00 36.03 3.16
3302 9475 5.336213 CCATATGCTTCCAAGTGATAATGGC 60.336 44.000 0.00 0.00 36.62 4.40
3303 9476 3.084536 TGCTTCCAAGTGATAATGGCA 57.915 42.857 0.00 0.00 36.62 4.92
3304 9477 2.754552 TGCTTCCAAGTGATAATGGCAC 59.245 45.455 0.00 0.00 36.62 5.01
3317 9490 2.973600 GGCACACGTACGCCCAAA 60.974 61.111 16.72 0.00 42.82 3.28
3318 9491 2.554272 GCACACGTACGCCCAAAG 59.446 61.111 16.72 0.73 0.00 2.77
3319 9492 2.961669 GCACACGTACGCCCAAAGG 61.962 63.158 16.72 0.00 0.00 3.11
3321 9494 2.031465 CACGTACGCCCAAAGGGT 59.969 61.111 16.72 0.00 46.51 4.34
3330 9503 2.928801 GCCCAAAGGGTGACAATTTT 57.071 45.000 3.68 0.00 46.51 1.82
3331 9504 2.766313 GCCCAAAGGGTGACAATTTTC 58.234 47.619 3.68 0.00 46.51 2.29
3332 9505 2.549992 GCCCAAAGGGTGACAATTTTCC 60.550 50.000 3.68 0.00 46.51 3.13
3333 9506 2.703007 CCCAAAGGGTGACAATTTTCCA 59.297 45.455 0.00 0.00 38.25 3.53
3334 9507 3.327464 CCCAAAGGGTGACAATTTTCCAT 59.673 43.478 0.00 0.00 38.25 3.41
3335 9508 4.530161 CCCAAAGGGTGACAATTTTCCATA 59.470 41.667 0.00 0.00 38.25 2.74
3336 9509 5.189539 CCCAAAGGGTGACAATTTTCCATAT 59.810 40.000 0.00 0.00 38.25 1.78
3337 9510 6.382570 CCCAAAGGGTGACAATTTTCCATATA 59.617 38.462 0.00 0.00 38.25 0.86
3338 9511 7.071071 CCCAAAGGGTGACAATTTTCCATATAT 59.929 37.037 0.00 0.00 38.25 0.86
3339 9512 7.927629 CCAAAGGGTGACAATTTTCCATATATG 59.072 37.037 5.68 5.68 0.00 1.78
3353 9526 5.705397 CCATATATGGTCCATCATCCAGT 57.295 43.478 21.85 0.00 43.05 4.00
3354 9527 5.434408 CCATATATGGTCCATCATCCAGTG 58.566 45.833 21.85 0.00 43.05 3.66
3355 9528 5.434408 CATATATGGTCCATCATCCAGTGG 58.566 45.833 7.92 1.40 37.14 4.00
3356 9529 1.897473 ATGGTCCATCATCCAGTGGA 58.103 50.000 15.88 15.88 42.03 4.02
3357 9530 1.897473 TGGTCCATCATCCAGTGGAT 58.103 50.000 19.53 19.53 45.57 3.41
3358 9531 3.059051 TGGTCCATCATCCAGTGGATA 57.941 47.619 24.40 13.08 45.57 2.59
3359 9532 2.974794 TGGTCCATCATCCAGTGGATAG 59.025 50.000 24.40 17.60 45.57 2.08
3360 9533 2.304180 GGTCCATCATCCAGTGGATAGG 59.696 54.545 24.40 23.31 45.57 2.57
3361 9534 3.242867 GTCCATCATCCAGTGGATAGGA 58.757 50.000 24.40 24.95 45.57 2.94
3362 9535 3.648067 GTCCATCATCCAGTGGATAGGAA 59.352 47.826 28.39 15.90 45.57 3.36
3363 9536 3.906218 TCCATCATCCAGTGGATAGGAAG 59.094 47.826 26.22 17.55 40.98 3.46
3364 9537 3.906218 CCATCATCCAGTGGATAGGAAGA 59.094 47.826 24.40 16.76 40.98 2.87
3365 9538 4.535294 CCATCATCCAGTGGATAGGAAGAT 59.465 45.833 24.40 18.18 40.98 2.40
3366 9539 5.013913 CCATCATCCAGTGGATAGGAAGATT 59.986 44.000 24.40 1.29 40.98 2.40
3367 9540 6.466904 CCATCATCCAGTGGATAGGAAGATTT 60.467 42.308 24.40 0.94 40.98 2.17
3368 9541 7.256799 CCATCATCCAGTGGATAGGAAGATTTA 60.257 40.741 24.40 1.94 40.98 1.40
3369 9542 7.878621 TCATCCAGTGGATAGGAAGATTTAT 57.121 36.000 24.40 0.00 40.98 1.40
3370 9543 7.911651 TCATCCAGTGGATAGGAAGATTTATC 58.088 38.462 24.40 0.00 40.98 1.75
3371 9544 7.736691 TCATCCAGTGGATAGGAAGATTTATCT 59.263 37.037 24.40 0.00 40.98 1.98
3372 9545 8.381636 CATCCAGTGGATAGGAAGATTTATCTT 58.618 37.037 24.40 4.71 44.11 2.40
3373 9546 7.739825 TCCAGTGGATAGGAAGATTTATCTTG 58.260 38.462 8.12 0.00 46.47 3.02
3374 9547 6.939163 CCAGTGGATAGGAAGATTTATCTTGG 59.061 42.308 1.68 0.00 46.47 3.61
3375 9548 6.429385 CAGTGGATAGGAAGATTTATCTTGGC 59.571 42.308 9.59 0.00 46.47 4.52
3376 9549 6.101734 AGTGGATAGGAAGATTTATCTTGGCA 59.898 38.462 9.59 0.00 46.47 4.92
3377 9550 6.772716 GTGGATAGGAAGATTTATCTTGGCAA 59.227 38.462 9.59 0.00 46.47 4.52
3378 9551 7.000472 TGGATAGGAAGATTTATCTTGGCAAG 59.000 38.462 21.17 21.17 46.47 4.01
3379 9552 6.072230 GGATAGGAAGATTTATCTTGGCAAGC 60.072 42.308 22.31 7.25 46.47 4.01
3380 9553 3.956848 AGGAAGATTTATCTTGGCAAGCC 59.043 43.478 22.31 13.56 46.47 4.35
3381 9554 3.701040 GGAAGATTTATCTTGGCAAGCCA 59.299 43.478 22.31 10.24 46.47 4.75
3382 9555 4.440663 GGAAGATTTATCTTGGCAAGCCAC 60.441 45.833 22.31 9.77 46.47 5.01
3383 9556 4.731773 GAAGATTTATCTTGGCAAGCCACG 60.732 45.833 22.31 12.52 46.47 4.94
3391 9564 4.389576 GCAAGCCACGCGTCCTTG 62.390 66.667 30.32 30.32 39.08 3.61
3392 9565 2.972505 CAAGCCACGCGTCCTTGT 60.973 61.111 28.06 7.60 33.17 3.16
3393 9566 2.972505 AAGCCACGCGTCCTTGTG 60.973 61.111 9.86 0.00 35.87 3.33
3396 9569 3.049674 CCACGCGTCCTTGTGCAT 61.050 61.111 9.86 0.00 34.77 3.96
3397 9570 2.174107 CACGCGTCCTTGTGCATG 59.826 61.111 9.86 0.00 0.00 4.06
3398 9571 3.049674 ACGCGTCCTTGTGCATGG 61.050 61.111 5.58 0.00 0.00 3.66
3399 9572 4.465512 CGCGTCCTTGTGCATGGC 62.466 66.667 0.00 0.00 0.00 4.40
3400 9573 3.058160 GCGTCCTTGTGCATGGCT 61.058 61.111 0.00 0.00 0.00 4.75
3401 9574 2.629656 GCGTCCTTGTGCATGGCTT 61.630 57.895 0.00 0.00 0.00 4.35
3402 9575 1.959085 CGTCCTTGTGCATGGCTTT 59.041 52.632 0.00 0.00 0.00 3.51
3403 9576 0.109597 CGTCCTTGTGCATGGCTTTC 60.110 55.000 0.00 0.00 0.00 2.62
3404 9577 0.244721 GTCCTTGTGCATGGCTTTCC 59.755 55.000 0.00 0.00 0.00 3.13
3405 9578 0.112995 TCCTTGTGCATGGCTTTCCT 59.887 50.000 0.00 0.00 0.00 3.36
3406 9579 0.971386 CCTTGTGCATGGCTTTCCTT 59.029 50.000 0.00 0.00 0.00 3.36
3407 9580 2.170166 CCTTGTGCATGGCTTTCCTTA 58.830 47.619 0.00 0.00 0.00 2.69
3408 9581 2.165030 CCTTGTGCATGGCTTTCCTTAG 59.835 50.000 0.00 0.00 0.00 2.18
3409 9582 1.176527 TGTGCATGGCTTTCCTTAGC 58.823 50.000 0.00 0.00 40.48 3.09
3410 9583 1.272092 TGTGCATGGCTTTCCTTAGCT 60.272 47.619 0.00 0.00 40.99 3.32
3411 9584 1.821136 GTGCATGGCTTTCCTTAGCTT 59.179 47.619 0.00 0.00 40.99 3.74
3412 9585 2.232208 GTGCATGGCTTTCCTTAGCTTT 59.768 45.455 0.00 0.00 40.99 3.51
3413 9586 2.493278 TGCATGGCTTTCCTTAGCTTTC 59.507 45.455 0.00 0.00 40.99 2.62
3414 9587 2.493278 GCATGGCTTTCCTTAGCTTTCA 59.507 45.455 0.00 0.00 40.99 2.69
3415 9588 3.131755 GCATGGCTTTCCTTAGCTTTCAT 59.868 43.478 0.00 0.00 40.99 2.57
3416 9589 4.382362 GCATGGCTTTCCTTAGCTTTCATT 60.382 41.667 0.00 0.00 40.99 2.57
3417 9590 5.727434 CATGGCTTTCCTTAGCTTTCATTT 58.273 37.500 0.00 0.00 40.99 2.32
3418 9591 5.806654 TGGCTTTCCTTAGCTTTCATTTT 57.193 34.783 0.00 0.00 40.99 1.82
3419 9592 6.173427 TGGCTTTCCTTAGCTTTCATTTTT 57.827 33.333 0.00 0.00 40.99 1.94
3438 9611 4.803098 TTTTTCCCTAGAAGAGACCTCG 57.197 45.455 0.00 0.00 32.35 4.63
3439 9612 3.733883 TTTCCCTAGAAGAGACCTCGA 57.266 47.619 0.00 0.00 32.35 4.04
3440 9613 3.733883 TTCCCTAGAAGAGACCTCGAA 57.266 47.619 0.00 0.00 34.09 3.71
3441 9614 3.284793 TCCCTAGAAGAGACCTCGAAG 57.715 52.381 0.00 0.00 34.09 3.79
3442 9615 2.844966 TCCCTAGAAGAGACCTCGAAGA 59.155 50.000 0.00 0.00 34.09 2.87
3443 9616 2.946990 CCCTAGAAGAGACCTCGAAGAC 59.053 54.545 0.00 0.00 34.09 3.01
3444 9617 3.371166 CCCTAGAAGAGACCTCGAAGACT 60.371 52.174 0.00 0.00 34.09 3.24
3445 9618 4.141665 CCCTAGAAGAGACCTCGAAGACTA 60.142 50.000 0.00 0.00 34.09 2.59
3446 9619 5.455612 CCCTAGAAGAGACCTCGAAGACTAT 60.456 48.000 0.00 0.00 34.09 2.12
3447 9620 5.699458 CCTAGAAGAGACCTCGAAGACTATC 59.301 48.000 0.00 0.00 34.09 2.08
3448 9621 5.105567 AGAAGAGACCTCGAAGACTATCA 57.894 43.478 0.00 0.00 34.09 2.15
3449 9622 5.123227 AGAAGAGACCTCGAAGACTATCAG 58.877 45.833 0.00 0.00 34.09 2.90
3450 9623 4.764050 AGAGACCTCGAAGACTATCAGA 57.236 45.455 0.00 0.00 34.09 3.27
3451 9624 4.703897 AGAGACCTCGAAGACTATCAGAG 58.296 47.826 0.00 0.00 34.09 3.35
3452 9625 3.211045 AGACCTCGAAGACTATCAGAGC 58.789 50.000 0.00 0.00 0.00 4.09
3453 9626 2.946329 GACCTCGAAGACTATCAGAGCA 59.054 50.000 0.00 0.00 0.00 4.26
3454 9627 3.357203 ACCTCGAAGACTATCAGAGCAA 58.643 45.455 0.00 0.00 0.00 3.91
3455 9628 3.957497 ACCTCGAAGACTATCAGAGCAAT 59.043 43.478 0.00 0.00 0.00 3.56
3456 9629 4.202101 ACCTCGAAGACTATCAGAGCAATG 60.202 45.833 0.00 0.00 0.00 2.82
3457 9630 4.202101 CCTCGAAGACTATCAGAGCAATGT 60.202 45.833 0.00 0.00 0.00 2.71
3458 9631 4.926244 TCGAAGACTATCAGAGCAATGTC 58.074 43.478 0.00 0.00 0.00 3.06
3459 9632 4.399303 TCGAAGACTATCAGAGCAATGTCA 59.601 41.667 0.00 0.00 0.00 3.58
3460 9633 5.105063 CGAAGACTATCAGAGCAATGTCAA 58.895 41.667 0.00 0.00 0.00 3.18
3461 9634 5.752472 CGAAGACTATCAGAGCAATGTCAAT 59.248 40.000 0.00 0.00 0.00 2.57
3462 9635 6.257411 CGAAGACTATCAGAGCAATGTCAATT 59.743 38.462 0.00 0.00 0.00 2.32
3463 9636 6.922247 AGACTATCAGAGCAATGTCAATTG 57.078 37.500 0.00 0.00 45.13 2.32
3464 9637 6.413052 AGACTATCAGAGCAATGTCAATTGT 58.587 36.000 5.13 0.00 44.34 2.71
3465 9638 6.883217 AGACTATCAGAGCAATGTCAATTGTT 59.117 34.615 5.13 0.00 44.34 2.83
3466 9639 7.392673 AGACTATCAGAGCAATGTCAATTGTTT 59.607 33.333 5.13 0.00 44.34 2.83
3467 9640 7.889469 ACTATCAGAGCAATGTCAATTGTTTT 58.111 30.769 5.13 0.00 44.34 2.43
3468 9641 8.025445 ACTATCAGAGCAATGTCAATTGTTTTC 58.975 33.333 5.13 0.00 44.34 2.29
3469 9642 6.395426 TCAGAGCAATGTCAATTGTTTTCT 57.605 33.333 5.13 0.00 44.34 2.52
3470 9643 6.441274 TCAGAGCAATGTCAATTGTTTTCTC 58.559 36.000 5.13 7.49 44.34 2.87
3471 9644 6.263842 TCAGAGCAATGTCAATTGTTTTCTCT 59.736 34.615 5.13 9.38 44.34 3.10
3472 9645 6.581542 CAGAGCAATGTCAATTGTTTTCTCTC 59.418 38.462 5.13 7.22 44.34 3.20
3473 9646 5.776744 AGCAATGTCAATTGTTTTCTCTCC 58.223 37.500 5.13 0.00 44.34 3.71
3474 9647 4.618489 GCAATGTCAATTGTTTTCTCTCCG 59.382 41.667 5.13 0.00 44.34 4.63
3475 9648 5.562696 GCAATGTCAATTGTTTTCTCTCCGA 60.563 40.000 5.13 0.00 44.34 4.55
3476 9649 6.615088 CAATGTCAATTGTTTTCTCTCCGAT 58.385 36.000 5.13 0.00 38.72 4.18
3477 9650 5.611796 TGTCAATTGTTTTCTCTCCGATG 57.388 39.130 5.13 0.00 0.00 3.84
3478 9651 5.304778 TGTCAATTGTTTTCTCTCCGATGA 58.695 37.500 5.13 0.00 0.00 2.92
3479 9652 5.179368 TGTCAATTGTTTTCTCTCCGATGAC 59.821 40.000 5.13 0.00 35.30 3.06
3480 9653 4.695455 TCAATTGTTTTCTCTCCGATGACC 59.305 41.667 5.13 0.00 0.00 4.02
3481 9654 2.762535 TGTTTTCTCTCCGATGACCC 57.237 50.000 0.00 0.00 0.00 4.46
3482 9655 1.974957 TGTTTTCTCTCCGATGACCCA 59.025 47.619 0.00 0.00 0.00 4.51
3483 9656 2.370519 TGTTTTCTCTCCGATGACCCAA 59.629 45.455 0.00 0.00 0.00 4.12
3484 9657 3.003480 GTTTTCTCTCCGATGACCCAAG 58.997 50.000 0.00 0.00 0.00 3.61
3485 9658 1.195115 TTCTCTCCGATGACCCAAGG 58.805 55.000 0.00 0.00 0.00 3.61
3486 9659 0.041238 TCTCTCCGATGACCCAAGGT 59.959 55.000 0.00 0.00 39.44 3.50
3487 9660 0.176680 CTCTCCGATGACCCAAGGTG 59.823 60.000 0.00 0.00 35.25 4.00
3488 9661 0.252057 TCTCCGATGACCCAAGGTGA 60.252 55.000 0.00 0.00 35.25 4.02
3489 9662 0.613260 CTCCGATGACCCAAGGTGAA 59.387 55.000 0.00 0.00 35.25 3.18
3490 9663 1.210478 CTCCGATGACCCAAGGTGAAT 59.790 52.381 0.00 0.00 35.25 2.57
3491 9664 2.434336 CTCCGATGACCCAAGGTGAATA 59.566 50.000 0.00 0.00 35.25 1.75
3492 9665 2.169769 TCCGATGACCCAAGGTGAATAC 59.830 50.000 0.00 0.00 35.25 1.89
3532 9705 7.817418 TTCTAATGGTAATGTAAATGGAGGC 57.183 36.000 0.00 0.00 0.00 4.70
3533 9706 6.905736 TCTAATGGTAATGTAAATGGAGGCA 58.094 36.000 0.00 0.00 0.00 4.75
3534 9707 5.852282 AATGGTAATGTAAATGGAGGCAC 57.148 39.130 0.00 0.00 0.00 5.01
3535 9708 4.308526 TGGTAATGTAAATGGAGGCACA 57.691 40.909 0.00 0.00 0.00 4.57
3536 9709 4.269183 TGGTAATGTAAATGGAGGCACAG 58.731 43.478 0.00 0.00 0.00 3.66
3537 9710 4.018870 TGGTAATGTAAATGGAGGCACAGA 60.019 41.667 0.00 0.00 0.00 3.41
3538 9711 4.947388 GGTAATGTAAATGGAGGCACAGAA 59.053 41.667 0.00 0.00 0.00 3.02
3539 9712 5.066505 GGTAATGTAAATGGAGGCACAGAAG 59.933 44.000 0.00 0.00 0.00 2.85
3540 9713 4.574674 ATGTAAATGGAGGCACAGAAGA 57.425 40.909 0.00 0.00 0.00 2.87
3541 9714 3.942829 TGTAAATGGAGGCACAGAAGAG 58.057 45.455 0.00 0.00 0.00 2.85
3542 9715 2.503895 AAATGGAGGCACAGAAGAGG 57.496 50.000 0.00 0.00 0.00 3.69
3543 9716 0.034670 AATGGAGGCACAGAAGAGGC 60.035 55.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 1975 6.270000 TGCTAGCCTATTGGTATGTGTCTTAT 59.730 38.462 13.29 0.00 35.27 1.73
124 1976 5.600898 TGCTAGCCTATTGGTATGTGTCTTA 59.399 40.000 13.29 0.00 35.27 2.10
262 2114 3.138205 ACTAACTGATGACGCTTCTCG 57.862 47.619 0.00 0.00 45.38 4.04
348 2200 2.438021 TGATATCCCTTACAAAGCGGCT 59.562 45.455 0.00 0.00 0.00 5.52
498 2350 4.772624 AGTATAAGTCAGCCAGTCTTGTCA 59.227 41.667 0.00 0.00 0.00 3.58
516 2368 8.171164 ACATTGTCAATCTCGAGATGAGTATA 57.829 34.615 27.93 12.67 45.46 1.47
547 2399 3.098377 TGCAACATCCATTTGGCTACAT 58.902 40.909 0.00 0.00 34.44 2.29
551 2403 3.962063 TCATATGCAACATCCATTTGGCT 59.038 39.130 0.00 0.00 34.44 4.75
1179 3043 0.326927 AGCAAGCGGCCTTACCTTTA 59.673 50.000 0.00 0.00 46.50 1.85
1205 3076 4.138290 TGCGTATGGGTTCTTGAAAGAAA 58.862 39.130 7.05 0.00 45.77 2.52
1206 3077 3.745799 TGCGTATGGGTTCTTGAAAGAA 58.254 40.909 1.31 1.31 42.41 2.52
1207 3078 3.410631 TGCGTATGGGTTCTTGAAAGA 57.589 42.857 0.00 0.00 0.00 2.52
1208 3079 4.396166 AGAATGCGTATGGGTTCTTGAAAG 59.604 41.667 0.00 0.00 0.00 2.62
1229 3101 4.279169 CCCTTTGAGAAACAAGATGCAAGA 59.721 41.667 0.00 0.00 39.77 3.02
1249 3142 2.104622 CCTGGCAAAAATGTTTCACCCT 59.895 45.455 0.00 0.00 0.00 4.34
1448 3638 2.106131 CGCCCAATCGTCGATCCA 59.894 61.111 8.45 0.00 0.00 3.41
1651 3854 3.820843 CCCTGGGGCCGCCTAAAT 61.821 66.667 18.45 0.00 0.00 1.40
2160 8103 2.281900 TACTTTGTGCCGGCCACC 60.282 61.111 26.77 12.70 44.01 4.61
2370 8340 0.391228 TGTCGTTGCTGAGCCAGTTA 59.609 50.000 0.23 0.00 33.43 2.24
2578 8551 7.360946 GCGCTAAAGAAAAGAAAAGATAGGACA 60.361 37.037 0.00 0.00 0.00 4.02
2584 8557 8.490355 CATTTTGCGCTAAAGAAAAGAAAAGAT 58.510 29.630 20.83 0.00 0.00 2.40
2649 8622 8.867097 TGTAAAGAAAGAAGTGGTACAGACTAT 58.133 33.333 0.00 0.00 41.80 2.12
2652 8625 7.781548 TTGTAAAGAAAGAAGTGGTACAGAC 57.218 36.000 0.00 0.00 41.80 3.51
2667 8640 4.510711 TGTATGCGTCCGTTTTGTAAAGAA 59.489 37.500 0.00 0.00 0.00 2.52
2669 8642 4.392619 TGTATGCGTCCGTTTTGTAAAG 57.607 40.909 0.00 0.00 0.00 1.85
2673 8646 3.907894 AATTGTATGCGTCCGTTTTGT 57.092 38.095 0.00 0.00 0.00 2.83
2674 8647 3.181545 GCAAATTGTATGCGTCCGTTTTG 60.182 43.478 0.00 0.00 33.57 2.44
2690 8668 7.568366 TCCCTTATTTAATGGATGAGGCAAATT 59.432 33.333 0.00 0.00 30.94 1.82
2733 8711 8.027771 ACGACCTTGTAGTATTCTCTTACTTTG 58.972 37.037 0.00 0.00 34.35 2.77
2734 8712 8.120140 ACGACCTTGTAGTATTCTCTTACTTT 57.880 34.615 0.00 0.00 34.35 2.66
2735 8713 7.700022 ACGACCTTGTAGTATTCTCTTACTT 57.300 36.000 0.00 0.00 34.35 2.24
2736 8714 7.700022 AACGACCTTGTAGTATTCTCTTACT 57.300 36.000 0.00 0.00 36.43 2.24
2738 8716 8.798859 AGTAACGACCTTGTAGTATTCTCTTA 57.201 34.615 0.00 0.00 0.00 2.10
2739 8717 7.611079 AGAGTAACGACCTTGTAGTATTCTCTT 59.389 37.037 0.00 0.00 28.40 2.85
2748 8918 7.411274 CAGATTAGAGAGTAACGACCTTGTAG 58.589 42.308 0.00 0.00 0.00 2.74
2815 8987 8.494433 TCTCTCCAACATAAATAACATAAGGCT 58.506 33.333 0.00 0.00 0.00 4.58
2823 8995 9.396022 TCCATTCTTCTCTCCAACATAAATAAC 57.604 33.333 0.00 0.00 0.00 1.89
2826 8998 6.540189 CGTCCATTCTTCTCTCCAACATAAAT 59.460 38.462 0.00 0.00 0.00 1.40
2865 9037 2.080286 ATGCTACGGTCTTGTGTCAC 57.920 50.000 0.00 0.00 0.00 3.67
2906 9078 4.223953 TCCCCTCACCATACTCACTTATC 58.776 47.826 0.00 0.00 0.00 1.75
2916 9088 0.469331 CGTAGGCTCCCCTCACCATA 60.469 60.000 0.00 0.00 41.75 2.74
2932 9104 7.814107 AGACAAATAGGACAATACGAAAACGTA 59.186 33.333 5.04 5.04 0.00 3.57
2939 9112 4.641541 TCCGAGACAAATAGGACAATACGA 59.358 41.667 0.00 0.00 0.00 3.43
2954 9127 1.899142 TGGATCAACATGTCCGAGACA 59.101 47.619 0.00 8.81 46.90 3.41
2955 9128 2.672961 TGGATCAACATGTCCGAGAC 57.327 50.000 0.00 0.00 37.32 3.36
2987 9160 4.039973 TCACCGTGGAATAGAAAGTGTTCT 59.960 41.667 0.00 0.00 46.18 3.01
2988 9161 4.312443 TCACCGTGGAATAGAAAGTGTTC 58.688 43.478 0.00 0.00 0.00 3.18
2989 9162 4.345859 TCACCGTGGAATAGAAAGTGTT 57.654 40.909 0.00 0.00 0.00 3.32
2990 9163 4.345859 TTCACCGTGGAATAGAAAGTGT 57.654 40.909 0.00 0.00 0.00 3.55
2991 9164 5.643777 AGATTTCACCGTGGAATAGAAAGTG 59.356 40.000 4.94 0.00 32.45 3.16
2992 9165 5.805728 AGATTTCACCGTGGAATAGAAAGT 58.194 37.500 4.94 0.00 32.45 2.66
2993 9166 5.005779 CGAGATTTCACCGTGGAATAGAAAG 59.994 44.000 4.94 0.00 32.45 2.62
2994 9167 4.868171 CGAGATTTCACCGTGGAATAGAAA 59.132 41.667 4.94 0.00 33.33 2.52
2995 9168 4.081862 ACGAGATTTCACCGTGGAATAGAA 60.082 41.667 4.94 0.00 35.02 2.10
2996 9169 3.446161 ACGAGATTTCACCGTGGAATAGA 59.554 43.478 4.94 0.00 35.02 1.98
2997 9170 3.782046 ACGAGATTTCACCGTGGAATAG 58.218 45.455 4.94 3.38 35.02 1.73
2998 9171 3.880047 ACGAGATTTCACCGTGGAATA 57.120 42.857 4.94 0.00 35.02 1.75
2999 9172 2.742053 CAACGAGATTTCACCGTGGAAT 59.258 45.455 4.60 4.60 36.58 3.01
3000 9173 2.139917 CAACGAGATTTCACCGTGGAA 58.860 47.619 0.00 0.00 36.58 3.53
3001 9174 1.069513 ACAACGAGATTTCACCGTGGA 59.930 47.619 0.00 0.00 36.58 4.02
3002 9175 1.508632 ACAACGAGATTTCACCGTGG 58.491 50.000 0.00 0.00 36.58 4.94
3003 9176 2.286833 ACAACAACGAGATTTCACCGTG 59.713 45.455 0.00 0.00 36.58 4.94
3004 9177 2.542595 GACAACAACGAGATTTCACCGT 59.457 45.455 0.00 0.00 38.24 4.83
3005 9178 2.409752 CGACAACAACGAGATTTCACCG 60.410 50.000 0.00 0.00 0.00 4.94
3006 9179 2.798283 TCGACAACAACGAGATTTCACC 59.202 45.455 0.00 0.00 34.85 4.02
3033 9206 1.901833 GGGCATGATCAAAGTTTGGGT 59.098 47.619 15.47 5.06 0.00 4.51
3041 9214 3.459227 TGAGACTATGGGGCATGATCAAA 59.541 43.478 0.00 0.00 0.00 2.69
3074 9247 9.163894 TCTCCAGGACATATCTTCTTCAAATAT 57.836 33.333 0.00 0.00 0.00 1.28
3082 9255 4.169856 AGGAGTCTCCAGGACATATCTTCT 59.830 45.833 21.26 0.00 46.72 2.85
3083 9256 4.479158 AGGAGTCTCCAGGACATATCTTC 58.521 47.826 21.26 0.00 46.72 2.87
3084 9257 4.078922 TGAGGAGTCTCCAGGACATATCTT 60.079 45.833 21.26 0.00 46.72 2.40
3095 9268 2.604912 TGTAAGCTGAGGAGTCTCCA 57.395 50.000 21.26 0.00 39.61 3.86
3097 9270 4.518970 CCTCTATGTAAGCTGAGGAGTCTC 59.481 50.000 9.42 0.00 46.53 3.36
3107 9280 4.623171 CGGGTTTTGTCCTCTATGTAAGCT 60.623 45.833 0.00 0.00 0.00 3.74
3117 9290 3.613193 GCCAAATTACGGGTTTTGTCCTC 60.613 47.826 0.00 0.00 32.23 3.71
3157 9330 2.631062 TGGATTTGGACCGCGTATAGAT 59.369 45.455 4.92 0.00 0.00 1.98
3164 9337 0.596082 AAAACTGGATTTGGACCGCG 59.404 50.000 0.00 0.00 0.00 6.46
3177 9350 7.405469 TTGCATTGTTAGCAATACAAAACTG 57.595 32.000 13.68 0.00 46.13 3.16
3220 9393 0.817654 GGTATGAAAGGCTTGGGCAC 59.182 55.000 0.00 0.00 40.87 5.01
3221 9394 0.679640 CGGTATGAAAGGCTTGGGCA 60.680 55.000 0.00 0.00 40.87 5.36
3222 9395 2.004808 GCGGTATGAAAGGCTTGGGC 62.005 60.000 0.00 0.00 37.82 5.36
3223 9396 1.714899 CGCGGTATGAAAGGCTTGGG 61.715 60.000 0.00 0.00 0.00 4.12
3224 9397 1.714899 CCGCGGTATGAAAGGCTTGG 61.715 60.000 19.50 0.00 0.00 3.61
3225 9398 0.742990 TCCGCGGTATGAAAGGCTTG 60.743 55.000 27.15 0.00 0.00 4.01
3226 9399 0.462047 CTCCGCGGTATGAAAGGCTT 60.462 55.000 27.15 0.00 0.00 4.35
3227 9400 1.144057 CTCCGCGGTATGAAAGGCT 59.856 57.895 27.15 0.00 0.00 4.58
3228 9401 2.534903 GCTCCGCGGTATGAAAGGC 61.535 63.158 27.15 13.10 0.00 4.35
3229 9402 0.876342 GAGCTCCGCGGTATGAAAGG 60.876 60.000 27.15 7.32 0.00 3.11
3230 9403 0.179111 TGAGCTCCGCGGTATGAAAG 60.179 55.000 27.15 15.25 0.00 2.62
3231 9404 0.464036 ATGAGCTCCGCGGTATGAAA 59.536 50.000 27.15 8.36 0.00 2.69
3232 9405 0.249447 CATGAGCTCCGCGGTATGAA 60.249 55.000 27.15 10.11 0.00 2.57
3233 9406 1.363807 CATGAGCTCCGCGGTATGA 59.636 57.895 27.15 4.17 0.00 2.15
3234 9407 1.665916 CCATGAGCTCCGCGGTATG 60.666 63.158 27.15 20.17 0.00 2.39
3235 9408 2.737180 CCATGAGCTCCGCGGTAT 59.263 61.111 27.15 12.42 0.00 2.73
3236 9409 3.536917 CCCATGAGCTCCGCGGTA 61.537 66.667 27.15 11.20 0.00 4.02
3239 9412 4.147449 TCACCCATGAGCTCCGCG 62.147 66.667 12.15 0.00 0.00 6.46
3240 9413 2.202987 CTCACCCATGAGCTCCGC 60.203 66.667 12.15 0.00 45.83 5.54
3247 9420 1.676678 GGCTACTCGCTCACCCATGA 61.677 60.000 0.00 0.00 39.13 3.07
3248 9421 1.227380 GGCTACTCGCTCACCCATG 60.227 63.158 0.00 0.00 39.13 3.66
3249 9422 2.435693 GGGCTACTCGCTCACCCAT 61.436 63.158 0.00 0.00 39.60 4.00
3250 9423 3.075005 GGGCTACTCGCTCACCCA 61.075 66.667 0.00 0.00 39.60 4.51
3251 9424 3.851128 GGGGCTACTCGCTCACCC 61.851 72.222 0.00 0.00 42.52 4.61
3252 9425 3.851128 GGGGGCTACTCGCTCACC 61.851 72.222 0.00 0.00 42.52 4.02
3253 9426 3.075005 TGGGGGCTACTCGCTCAC 61.075 66.667 0.00 0.00 45.27 3.51
3254 9427 2.759973 CTGGGGGCTACTCGCTCA 60.760 66.667 0.00 0.00 42.52 4.26
3255 9428 4.228567 GCTGGGGGCTACTCGCTC 62.229 72.222 0.00 0.00 38.86 5.03
3259 9432 3.164977 GAGGGCTGGGGGCTACTC 61.165 72.222 0.00 0.00 41.46 2.59
3266 9439 3.252284 ATATGGCGAGGGCTGGGG 61.252 66.667 0.00 0.00 39.81 4.96
3267 9440 2.033141 CATATGGCGAGGGCTGGG 59.967 66.667 0.00 0.00 39.81 4.45
3268 9441 2.670934 GCATATGGCGAGGGCTGG 60.671 66.667 4.56 0.00 39.81 4.85
3276 9449 8.489025 CCATTATCACTTGGAAGCATATGGCG 62.489 46.154 4.56 0.00 40.74 5.69
3277 9450 5.336213 CCATTATCACTTGGAAGCATATGGC 60.336 44.000 4.56 0.00 37.79 4.40
3278 9451 5.336213 GCCATTATCACTTGGAAGCATATGG 60.336 44.000 4.56 0.00 34.81 2.74
3279 9452 5.242171 TGCCATTATCACTTGGAAGCATATG 59.758 40.000 0.00 0.00 34.81 1.78
3280 9453 5.242393 GTGCCATTATCACTTGGAAGCATAT 59.758 40.000 0.00 0.00 34.81 1.78
3281 9454 4.580167 GTGCCATTATCACTTGGAAGCATA 59.420 41.667 0.00 0.00 34.81 3.14
3282 9455 3.382546 GTGCCATTATCACTTGGAAGCAT 59.617 43.478 0.00 0.00 34.81 3.79
3283 9456 2.754552 GTGCCATTATCACTTGGAAGCA 59.245 45.455 0.00 0.00 34.81 3.91
3284 9457 2.754552 TGTGCCATTATCACTTGGAAGC 59.245 45.455 0.00 0.00 34.81 3.86
3285 9458 3.181507 CGTGTGCCATTATCACTTGGAAG 60.182 47.826 0.00 0.00 34.81 3.46
3286 9459 2.746904 CGTGTGCCATTATCACTTGGAA 59.253 45.455 0.00 0.00 34.81 3.53
3287 9460 2.290008 ACGTGTGCCATTATCACTTGGA 60.290 45.455 0.00 0.00 34.81 3.53
3288 9461 2.083774 ACGTGTGCCATTATCACTTGG 58.916 47.619 0.00 0.00 35.58 3.61
3289 9462 3.241963 CGTACGTGTGCCATTATCACTTG 60.242 47.826 7.22 0.00 35.58 3.16
3290 9463 2.927477 CGTACGTGTGCCATTATCACTT 59.073 45.455 7.22 0.00 35.58 3.16
3291 9464 2.536365 CGTACGTGTGCCATTATCACT 58.464 47.619 7.22 0.00 35.58 3.41
3292 9465 1.005347 GCGTACGTGTGCCATTATCAC 60.005 52.381 17.90 0.00 35.14 3.06
3293 9466 1.282817 GCGTACGTGTGCCATTATCA 58.717 50.000 17.90 0.00 0.00 2.15
3301 9474 2.554272 CTTTGGGCGTACGTGTGC 59.446 61.111 17.90 0.95 0.00 4.57
3302 9475 2.322081 CCCTTTGGGCGTACGTGTG 61.322 63.158 17.90 1.92 35.35 3.82
3303 9476 2.031465 CCCTTTGGGCGTACGTGT 59.969 61.111 17.90 0.00 35.35 4.49
3313 9486 4.622260 ATGGAAAATTGTCACCCTTTGG 57.378 40.909 0.00 0.00 37.80 3.28
3314 9487 8.876275 CATATATGGAAAATTGTCACCCTTTG 57.124 34.615 4.68 0.00 0.00 2.77
3330 9503 9.858558 TCCACTGGATGATGGACCATATATGGA 62.859 44.444 33.82 15.44 44.21 3.41
3331 9504 7.774993 TCCACTGGATGATGGACCATATATGG 61.775 46.154 27.16 27.16 43.13 2.74
3332 9505 5.190330 TCCACTGGATGATGGACCATATATG 59.810 44.000 7.05 5.68 40.17 1.78
3333 9506 5.353125 TCCACTGGATGATGGACCATATAT 58.647 41.667 7.05 5.16 40.17 0.86
3334 9507 4.762220 TCCACTGGATGATGGACCATATA 58.238 43.478 7.05 0.00 40.17 0.86
3335 9508 3.601520 TCCACTGGATGATGGACCATAT 58.398 45.455 7.05 1.64 40.17 1.78
3336 9509 3.059051 TCCACTGGATGATGGACCATA 57.941 47.619 7.05 0.00 40.17 2.74
3337 9510 1.897473 TCCACTGGATGATGGACCAT 58.103 50.000 6.71 6.71 40.17 3.55
3338 9511 3.415509 TCCACTGGATGATGGACCA 57.584 52.632 0.00 0.00 40.17 4.02
3342 9515 3.906218 TCTTCCTATCCACTGGATGATGG 59.094 47.826 19.49 16.98 43.06 3.51
3343 9516 5.758790 ATCTTCCTATCCACTGGATGATG 57.241 43.478 19.49 11.42 43.06 3.07
3344 9517 6.776887 AAATCTTCCTATCCACTGGATGAT 57.223 37.500 19.49 10.59 43.06 2.45
3345 9518 7.736691 AGATAAATCTTCCTATCCACTGGATGA 59.263 37.037 19.49 8.83 37.09 2.92
3346 9519 7.915930 AGATAAATCTTCCTATCCACTGGATG 58.084 38.462 19.49 9.89 37.09 3.51
3347 9520 8.381636 CAAGATAAATCTTCCTATCCACTGGAT 58.618 37.037 15.18 15.18 44.84 3.41
3348 9521 7.202130 CCAAGATAAATCTTCCTATCCACTGGA 60.202 40.741 0.00 0.00 44.84 3.86
3349 9522 6.939163 CCAAGATAAATCTTCCTATCCACTGG 59.061 42.308 2.17 0.00 44.84 4.00
3350 9523 6.429385 GCCAAGATAAATCTTCCTATCCACTG 59.571 42.308 2.17 0.00 44.84 3.66
3351 9524 6.101734 TGCCAAGATAAATCTTCCTATCCACT 59.898 38.462 2.17 0.00 44.84 4.00
3352 9525 6.299141 TGCCAAGATAAATCTTCCTATCCAC 58.701 40.000 2.17 0.00 44.84 4.02
3353 9526 6.514012 TGCCAAGATAAATCTTCCTATCCA 57.486 37.500 2.17 0.00 44.84 3.41
3354 9527 6.072230 GCTTGCCAAGATAAATCTTCCTATCC 60.072 42.308 9.04 0.00 44.84 2.59
3355 9528 6.072230 GGCTTGCCAAGATAAATCTTCCTATC 60.072 42.308 9.04 0.00 44.84 2.08
3356 9529 5.772169 GGCTTGCCAAGATAAATCTTCCTAT 59.228 40.000 9.04 0.00 44.84 2.57
3357 9530 5.133221 GGCTTGCCAAGATAAATCTTCCTA 58.867 41.667 9.04 0.00 44.84 2.94
3358 9531 3.956848 GGCTTGCCAAGATAAATCTTCCT 59.043 43.478 9.04 0.00 44.84 3.36
3359 9532 3.701040 TGGCTTGCCAAGATAAATCTTCC 59.299 43.478 12.40 0.00 44.84 3.46
3360 9533 4.676546 GTGGCTTGCCAAGATAAATCTTC 58.323 43.478 16.55 0.00 44.84 2.87
3362 9535 2.684881 CGTGGCTTGCCAAGATAAATCT 59.315 45.455 20.02 0.00 39.22 2.40
3363 9536 2.796032 GCGTGGCTTGCCAAGATAAATC 60.796 50.000 26.80 7.92 0.00 2.17
3364 9537 1.134946 GCGTGGCTTGCCAAGATAAAT 59.865 47.619 26.80 0.00 0.00 1.40
3365 9538 0.525761 GCGTGGCTTGCCAAGATAAA 59.474 50.000 26.80 0.00 0.00 1.40
3366 9539 1.643868 CGCGTGGCTTGCCAAGATAA 61.644 55.000 26.80 0.00 0.00 1.75
3367 9540 2.106074 CGCGTGGCTTGCCAAGATA 61.106 57.895 26.80 0.00 0.00 1.98
3368 9541 3.434319 CGCGTGGCTTGCCAAGAT 61.434 61.111 26.80 0.00 0.00 2.40
3369 9542 4.927782 ACGCGTGGCTTGCCAAGA 62.928 61.111 26.80 0.00 0.00 3.02
3370 9543 4.389576 GACGCGTGGCTTGCCAAG 62.390 66.667 20.70 20.30 0.00 3.61
3374 9547 4.389576 CAAGGACGCGTGGCTTGC 62.390 66.667 20.70 0.00 0.00 4.01
3375 9548 2.972505 ACAAGGACGCGTGGCTTG 60.973 61.111 20.70 11.83 0.00 4.01
3376 9549 2.972505 CACAAGGACGCGTGGCTT 60.973 61.111 20.70 0.00 0.00 4.35
3379 9552 3.049674 ATGCACAAGGACGCGTGG 61.050 61.111 20.70 5.79 33.62 4.94
3380 9553 2.174107 CATGCACAAGGACGCGTG 59.826 61.111 20.70 4.21 38.67 5.34
3381 9554 3.049674 CCATGCACAAGGACGCGT 61.050 61.111 13.85 13.85 0.00 6.01
3382 9555 4.465512 GCCATGCACAAGGACGCG 62.466 66.667 3.53 3.53 0.00 6.01
3383 9556 2.146073 AAAGCCATGCACAAGGACGC 62.146 55.000 5.89 0.00 0.00 5.19
3384 9557 0.109597 GAAAGCCATGCACAAGGACG 60.110 55.000 5.89 0.00 0.00 4.79
3385 9558 0.244721 GGAAAGCCATGCACAAGGAC 59.755 55.000 5.89 0.00 0.00 3.85
3386 9559 0.112995 AGGAAAGCCATGCACAAGGA 59.887 50.000 5.89 0.00 36.29 3.36
3387 9560 0.971386 AAGGAAAGCCATGCACAAGG 59.029 50.000 0.00 0.00 36.29 3.61
3388 9561 2.416431 GCTAAGGAAAGCCATGCACAAG 60.416 50.000 0.00 0.00 36.45 3.16
3389 9562 1.545582 GCTAAGGAAAGCCATGCACAA 59.454 47.619 0.00 0.00 36.45 3.33
3390 9563 1.176527 GCTAAGGAAAGCCATGCACA 58.823 50.000 0.00 0.00 36.45 4.57
3391 9564 1.467920 AGCTAAGGAAAGCCATGCAC 58.532 50.000 0.00 0.00 43.86 4.57
3392 9565 2.220653 AAGCTAAGGAAAGCCATGCA 57.779 45.000 0.00 0.00 43.86 3.96
3393 9566 2.493278 TGAAAGCTAAGGAAAGCCATGC 59.507 45.455 0.00 0.00 43.86 4.06
3394 9567 4.996788 ATGAAAGCTAAGGAAAGCCATG 57.003 40.909 0.00 0.00 43.86 3.66
3395 9568 6.364568 AAAATGAAAGCTAAGGAAAGCCAT 57.635 33.333 0.00 0.00 43.86 4.40
3396 9569 5.806654 AAAATGAAAGCTAAGGAAAGCCA 57.193 34.783 0.00 0.00 43.86 4.75
3417 9590 4.413760 TCGAGGTCTCTTCTAGGGAAAAA 58.586 43.478 0.00 0.00 0.00 1.94
3418 9591 4.043608 TCGAGGTCTCTTCTAGGGAAAA 57.956 45.455 0.00 0.00 0.00 2.29
3419 9592 3.733883 TCGAGGTCTCTTCTAGGGAAA 57.266 47.619 0.00 0.00 0.00 3.13
3420 9593 3.266254 TCTTCGAGGTCTCTTCTAGGGAA 59.734 47.826 0.00 0.00 0.00 3.97
3421 9594 2.844966 TCTTCGAGGTCTCTTCTAGGGA 59.155 50.000 0.00 0.00 0.00 4.20
3422 9595 2.946990 GTCTTCGAGGTCTCTTCTAGGG 59.053 54.545 0.00 0.00 0.00 3.53
3423 9596 3.881220 AGTCTTCGAGGTCTCTTCTAGG 58.119 50.000 0.00 0.00 0.00 3.02
3424 9597 6.285224 TGATAGTCTTCGAGGTCTCTTCTAG 58.715 44.000 0.00 0.00 0.00 2.43
3425 9598 6.098552 TCTGATAGTCTTCGAGGTCTCTTCTA 59.901 42.308 0.00 0.00 0.00 2.10
3426 9599 5.104693 TCTGATAGTCTTCGAGGTCTCTTCT 60.105 44.000 0.00 0.00 0.00 2.85
3427 9600 5.120399 TCTGATAGTCTTCGAGGTCTCTTC 58.880 45.833 0.00 0.00 0.00 2.87
3428 9601 5.105567 TCTGATAGTCTTCGAGGTCTCTT 57.894 43.478 0.00 0.00 0.00 2.85
3429 9602 4.703897 CTCTGATAGTCTTCGAGGTCTCT 58.296 47.826 0.00 0.00 0.00 3.10
3430 9603 3.250040 GCTCTGATAGTCTTCGAGGTCTC 59.750 52.174 0.00 0.00 0.00 3.36
3431 9604 3.211045 GCTCTGATAGTCTTCGAGGTCT 58.789 50.000 0.00 0.00 0.00 3.85
3432 9605 2.946329 TGCTCTGATAGTCTTCGAGGTC 59.054 50.000 0.00 0.00 0.00 3.85
3433 9606 3.006112 TGCTCTGATAGTCTTCGAGGT 57.994 47.619 0.00 0.00 0.00 3.85
3434 9607 4.202101 ACATTGCTCTGATAGTCTTCGAGG 60.202 45.833 0.00 0.00 0.00 4.63
3435 9608 4.930963 ACATTGCTCTGATAGTCTTCGAG 58.069 43.478 0.00 0.00 0.00 4.04
3436 9609 4.399303 TGACATTGCTCTGATAGTCTTCGA 59.601 41.667 0.00 0.00 0.00 3.71
3437 9610 4.676546 TGACATTGCTCTGATAGTCTTCG 58.323 43.478 0.00 0.00 0.00 3.79
3438 9611 7.065563 ACAATTGACATTGCTCTGATAGTCTTC 59.934 37.037 13.59 0.00 43.39 2.87
3439 9612 6.883217 ACAATTGACATTGCTCTGATAGTCTT 59.117 34.615 13.59 0.00 43.39 3.01
3440 9613 6.413052 ACAATTGACATTGCTCTGATAGTCT 58.587 36.000 13.59 0.00 43.39 3.24
3441 9614 6.674694 ACAATTGACATTGCTCTGATAGTC 57.325 37.500 13.59 0.00 43.39 2.59
3442 9615 7.458409 AAACAATTGACATTGCTCTGATAGT 57.542 32.000 13.59 0.00 43.39 2.12
3443 9616 8.242053 AGAAAACAATTGACATTGCTCTGATAG 58.758 33.333 13.59 0.00 43.39 2.08
3444 9617 8.114331 AGAAAACAATTGACATTGCTCTGATA 57.886 30.769 13.59 0.00 43.39 2.15
3445 9618 6.989659 AGAAAACAATTGACATTGCTCTGAT 58.010 32.000 13.59 0.00 43.39 2.90
3446 9619 6.263842 AGAGAAAACAATTGACATTGCTCTGA 59.736 34.615 22.07 0.00 43.39 3.27
3447 9620 6.444633 AGAGAAAACAATTGACATTGCTCTG 58.555 36.000 22.07 0.00 43.39 3.35
3448 9621 6.294397 GGAGAGAAAACAATTGACATTGCTCT 60.294 38.462 22.52 22.52 43.39 4.09
3449 9622 5.860716 GGAGAGAAAACAATTGACATTGCTC 59.139 40.000 13.59 15.69 43.39 4.26
3450 9623 5.563475 CGGAGAGAAAACAATTGACATTGCT 60.563 40.000 13.59 7.92 43.39 3.91
3451 9624 4.618489 CGGAGAGAAAACAATTGACATTGC 59.382 41.667 13.59 3.04 43.39 3.56
3452 9625 6.000891 TCGGAGAGAAAACAATTGACATTG 57.999 37.500 13.59 0.00 44.90 2.82
3453 9626 6.430925 TCATCGGAGAGAAAACAATTGACATT 59.569 34.615 13.59 3.67 43.63 2.71
3454 9627 5.939883 TCATCGGAGAGAAAACAATTGACAT 59.060 36.000 13.59 0.00 43.63 3.06
3455 9628 5.179368 GTCATCGGAGAGAAAACAATTGACA 59.821 40.000 13.59 0.00 43.63 3.58
3456 9629 5.390991 GGTCATCGGAGAGAAAACAATTGAC 60.391 44.000 13.59 0.81 43.63 3.18
3457 9630 4.695455 GGTCATCGGAGAGAAAACAATTGA 59.305 41.667 13.59 0.00 43.63 2.57
3458 9631 4.142600 GGGTCATCGGAGAGAAAACAATTG 60.143 45.833 3.24 3.24 43.63 2.32
3459 9632 4.010349 GGGTCATCGGAGAGAAAACAATT 58.990 43.478 0.00 0.00 43.63 2.32
3460 9633 3.009033 TGGGTCATCGGAGAGAAAACAAT 59.991 43.478 0.00 0.00 43.63 2.71
3461 9634 2.370519 TGGGTCATCGGAGAGAAAACAA 59.629 45.455 0.00 0.00 43.63 2.83
3462 9635 1.974957 TGGGTCATCGGAGAGAAAACA 59.025 47.619 0.00 0.00 43.63 2.83
3463 9636 2.762535 TGGGTCATCGGAGAGAAAAC 57.237 50.000 0.00 0.00 43.63 2.43
3464 9637 2.027192 CCTTGGGTCATCGGAGAGAAAA 60.027 50.000 0.00 0.00 43.63 2.29
3465 9638 1.555075 CCTTGGGTCATCGGAGAGAAA 59.445 52.381 0.00 0.00 43.63 2.52
3466 9639 1.195115 CCTTGGGTCATCGGAGAGAA 58.805 55.000 0.00 0.00 43.63 2.87
3467 9640 0.041238 ACCTTGGGTCATCGGAGAGA 59.959 55.000 0.00 0.00 43.63 3.10
3468 9641 0.176680 CACCTTGGGTCATCGGAGAG 59.823 60.000 0.00 0.00 33.77 3.20
3469 9642 0.252057 TCACCTTGGGTCATCGGAGA 60.252 55.000 0.00 0.00 34.81 3.71
3470 9643 0.613260 TTCACCTTGGGTCATCGGAG 59.387 55.000 0.00 0.00 31.02 4.63
3471 9644 1.285280 ATTCACCTTGGGTCATCGGA 58.715 50.000 0.00 0.00 31.02 4.55
3472 9645 2.561569 GTATTCACCTTGGGTCATCGG 58.438 52.381 0.00 0.00 31.02 4.18
3473 9646 2.093181 TGGTATTCACCTTGGGTCATCG 60.093 50.000 0.00 0.00 45.98 3.84
3474 9647 3.644966 TGGTATTCACCTTGGGTCATC 57.355 47.619 0.00 0.00 45.98 2.92
3475 9648 4.396357 TTTGGTATTCACCTTGGGTCAT 57.604 40.909 0.00 0.00 45.98 3.06
3476 9649 3.885976 TTTGGTATTCACCTTGGGTCA 57.114 42.857 0.00 0.00 45.98 4.02
3506 9679 8.860088 GCCTCCATTTACATTACCATTAGAAAT 58.140 33.333 0.00 0.00 0.00 2.17
3507 9680 7.836685 TGCCTCCATTTACATTACCATTAGAAA 59.163 33.333 0.00 0.00 0.00 2.52
3508 9681 7.284489 GTGCCTCCATTTACATTACCATTAGAA 59.716 37.037 0.00 0.00 0.00 2.10
3509 9682 6.770785 GTGCCTCCATTTACATTACCATTAGA 59.229 38.462 0.00 0.00 0.00 2.10
3510 9683 6.545666 TGTGCCTCCATTTACATTACCATTAG 59.454 38.462 0.00 0.00 0.00 1.73
3511 9684 6.427441 TGTGCCTCCATTTACATTACCATTA 58.573 36.000 0.00 0.00 0.00 1.90
3512 9685 5.268387 TGTGCCTCCATTTACATTACCATT 58.732 37.500 0.00 0.00 0.00 3.16
3513 9686 4.865905 TGTGCCTCCATTTACATTACCAT 58.134 39.130 0.00 0.00 0.00 3.55
3514 9687 4.018870 TCTGTGCCTCCATTTACATTACCA 60.019 41.667 0.00 0.00 0.00 3.25
3515 9688 4.523083 TCTGTGCCTCCATTTACATTACC 58.477 43.478 0.00 0.00 0.00 2.85
3516 9689 5.880332 TCTTCTGTGCCTCCATTTACATTAC 59.120 40.000 0.00 0.00 0.00 1.89
3517 9690 6.061022 TCTTCTGTGCCTCCATTTACATTA 57.939 37.500 0.00 0.00 0.00 1.90
3518 9691 4.922206 TCTTCTGTGCCTCCATTTACATT 58.078 39.130 0.00 0.00 0.00 2.71
3519 9692 4.521146 CTCTTCTGTGCCTCCATTTACAT 58.479 43.478 0.00 0.00 0.00 2.29
3520 9693 3.307691 CCTCTTCTGTGCCTCCATTTACA 60.308 47.826 0.00 0.00 0.00 2.41
3521 9694 3.274288 CCTCTTCTGTGCCTCCATTTAC 58.726 50.000 0.00 0.00 0.00 2.01
3522 9695 2.356125 GCCTCTTCTGTGCCTCCATTTA 60.356 50.000 0.00 0.00 0.00 1.40
3523 9696 1.615384 GCCTCTTCTGTGCCTCCATTT 60.615 52.381 0.00 0.00 0.00 2.32
3524 9697 0.034670 GCCTCTTCTGTGCCTCCATT 60.035 55.000 0.00 0.00 0.00 3.16
3525 9698 1.606531 GCCTCTTCTGTGCCTCCAT 59.393 57.895 0.00 0.00 0.00 3.41
3526 9699 2.596851 GGCCTCTTCTGTGCCTCCA 61.597 63.158 0.00 0.00 42.01 3.86
3527 9700 2.270527 GGCCTCTTCTGTGCCTCC 59.729 66.667 0.00 0.00 42.01 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.