Multiple sequence alignment - TraesCS2D01G321600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G321600 chr2D 100.000 3849 0 0 1 3849 413262973 413266821 0.000000e+00 7108.0
1 TraesCS2D01G321600 chr2D 87.923 679 74 4 2172 2850 413274495 413275165 0.000000e+00 793.0
2 TraesCS2D01G321600 chr2D 86.667 630 75 2 2223 2843 413290575 413291204 0.000000e+00 689.0
3 TraesCS2D01G321600 chr2D 78.552 373 50 11 1001 1370 413288624 413288969 6.470000e-53 219.0
4 TraesCS2D01G321600 chr2D 82.083 240 38 3 1007 1246 413273629 413273863 2.350000e-47 200.0
5 TraesCS2D01G321600 chr2D 86.747 166 21 1 3673 3837 552108187 552108022 2.360000e-42 183.0
6 TraesCS2D01G321600 chr2D 94.030 67 3 1 641 706 413263551 413263617 2.450000e-17 100.0
7 TraesCS2D01G321600 chr2D 94.030 67 3 1 579 645 413263613 413263678 2.450000e-17 100.0
8 TraesCS2D01G321600 chr2A 92.919 3008 118 42 1 2935 580251118 580254103 0.000000e+00 4287.0
9 TraesCS2D01G321600 chr2A 88.365 679 71 4 2172 2850 580282077 580282747 0.000000e+00 809.0
10 TraesCS2D01G321600 chr2A 86.957 621 81 0 2223 2843 580324441 580325061 0.000000e+00 699.0
11 TraesCS2D01G321600 chr2A 87.903 248 29 1 3592 3839 760872905 760872659 1.350000e-74 291.0
12 TraesCS2D01G321600 chr2A 86.034 179 23 2 1007 1184 580281237 580281414 1.410000e-44 191.0
13 TraesCS2D01G321600 chr2A 94.030 67 3 1 641 706 580251709 580251775 2.450000e-17 100.0
14 TraesCS2D01G321600 chr2A 94.030 67 3 1 579 645 580251771 580251836 2.450000e-17 100.0
15 TraesCS2D01G321600 chr2B 91.737 1416 67 25 567 1947 486584491 486585891 0.000000e+00 1921.0
16 TraesCS2D01G321600 chr2B 94.499 909 28 5 2045 2935 486588628 486589532 0.000000e+00 1382.0
17 TraesCS2D01G321600 chr2B 91.304 575 33 7 1 570 486583849 486584411 0.000000e+00 769.0
18 TraesCS2D01G321600 chr2B 87.005 631 71 4 2223 2843 486770897 486771526 0.000000e+00 701.0
19 TraesCS2D01G321600 chr2B 76.984 630 125 14 2224 2843 486952507 486953126 3.680000e-90 342.0
20 TraesCS2D01G321600 chr2B 87.597 258 32 0 2219 2476 486742419 486742676 2.250000e-77 300.0
21 TraesCS2D01G321600 chr2B 81.405 242 32 7 1007 1246 486741522 486741752 6.570000e-43 185.0
22 TraesCS2D01G321600 chr2B 78.275 313 44 11 1697 1992 486741967 486742272 3.060000e-41 180.0
23 TraesCS2D01G321600 chr2B 76.800 375 54 15 1001 1370 486768813 486769159 3.060000e-41 180.0
24 TraesCS2D01G321600 chr2B 97.015 67 1 1 579 645 486584565 486584630 1.130000e-20 111.0
25 TraesCS2D01G321600 chr6D 97.410 502 13 0 3336 3837 458064773 458064272 0.000000e+00 856.0
26 TraesCS2D01G321600 chr6D 97.800 409 5 1 2936 3340 458065557 458065149 0.000000e+00 702.0
27 TraesCS2D01G321600 chr1D 96.813 502 15 1 3336 3837 49429248 49428748 0.000000e+00 837.0
28 TraesCS2D01G321600 chr1D 95.413 218 10 0 2932 3149 49429991 49429774 7.910000e-92 348.0
29 TraesCS2D01G321600 chr1D 100.000 152 0 0 3189 3340 49429775 49429624 8.140000e-72 281.0
30 TraesCS2D01G321600 chr4A 84.444 540 39 26 3335 3841 149099555 149099028 1.240000e-134 490.0
31 TraesCS2D01G321600 chr4A 89.837 246 19 2 2936 3177 149107067 149106824 1.040000e-80 311.0
32 TraesCS2D01G321600 chr4A 84.393 173 25 2 2929 3100 96858777 96858948 6.610000e-38 169.0
33 TraesCS2D01G321600 chr3D 87.561 410 34 10 2935 3338 6469955 6470353 3.500000e-125 459.0
34 TraesCS2D01G321600 chr3D 91.144 271 22 2 3572 3841 6471063 6471332 2.180000e-97 366.0
35 TraesCS2D01G321600 chr3D 89.431 246 20 4 2936 3177 53560197 53559954 4.830000e-79 305.0
36 TraesCS2D01G321600 chr3D 84.579 214 18 5 3357 3570 6470832 6471030 8.430000e-47 198.0
37 TraesCS2D01G321600 chr1A 82.836 536 41 27 3334 3837 497897375 497897891 2.120000e-117 433.0
38 TraesCS2D01G321600 chr1A 88.259 247 23 2 2935 3177 497896637 497896881 1.350000e-74 291.0
39 TraesCS2D01G321600 chr1A 92.771 83 5 1 3257 3338 497896912 497896994 6.760000e-23 119.0
40 TraesCS2D01G321600 chr1B 91.450 269 21 2 3573 3840 631767583 631767316 6.070000e-98 368.0
41 TraesCS2D01G321600 chr3A 87.097 248 26 5 2936 3177 64822236 64822483 3.790000e-70 276.0
42 TraesCS2D01G321600 chr3A 88.199 161 19 0 2940 3100 64855139 64854979 3.920000e-45 193.0
43 TraesCS2D01G321600 chr3A 92.537 67 5 0 3213 3279 64822557 64822623 3.170000e-16 97.1
44 TraesCS2D01G321600 chr5B 84.083 289 22 7 3046 3333 23305449 23305184 1.370000e-64 257.0
45 TraesCS2D01G321600 chr7D 88.485 165 19 0 2936 3100 85027576 85027740 2.350000e-47 200.0
46 TraesCS2D01G321600 chr7D 88.732 71 8 0 1105 1175 112866857 112866927 1.900000e-13 87.9
47 TraesCS2D01G321600 chr7D 82.178 101 12 2 1075 1175 112946695 112946789 8.860000e-12 82.4
48 TraesCS2D01G321600 chr7D 85.714 63 9 0 3357 3419 634682371 634682309 2.480000e-07 67.6
49 TraesCS2D01G321600 chr3B 85.052 194 24 5 3647 3837 503575430 503575621 3.920000e-45 193.0
50 TraesCS2D01G321600 chr4D 79.839 248 37 7 3607 3841 97387132 97386885 6.610000e-38 169.0
51 TraesCS2D01G321600 chr7B 85.057 87 7 2 1067 1153 72435945 72436025 2.460000e-12 84.2
52 TraesCS2D01G321600 chr7B 93.878 49 3 0 1105 1153 72511690 72511738 1.480000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G321600 chr2D 413262973 413266821 3848 False 2436.000000 7108 96.020000 1 3849 3 chr2D.!!$F1 3848
1 TraesCS2D01G321600 chr2D 413273629 413275165 1536 False 496.500000 793 85.003000 1007 2850 2 chr2D.!!$F2 1843
2 TraesCS2D01G321600 chr2D 413288624 413291204 2580 False 454.000000 689 82.609500 1001 2843 2 chr2D.!!$F3 1842
3 TraesCS2D01G321600 chr2A 580251118 580254103 2985 False 1495.666667 4287 93.659667 1 2935 3 chr2A.!!$F2 2934
4 TraesCS2D01G321600 chr2A 580324441 580325061 620 False 699.000000 699 86.957000 2223 2843 1 chr2A.!!$F1 620
5 TraesCS2D01G321600 chr2A 580281237 580282747 1510 False 500.000000 809 87.199500 1007 2850 2 chr2A.!!$F3 1843
6 TraesCS2D01G321600 chr2B 486583849 486589532 5683 False 1045.750000 1921 93.638750 1 2935 4 chr2B.!!$F2 2934
7 TraesCS2D01G321600 chr2B 486768813 486771526 2713 False 440.500000 701 81.902500 1001 2843 2 chr2B.!!$F4 1842
8 TraesCS2D01G321600 chr2B 486952507 486953126 619 False 342.000000 342 76.984000 2224 2843 1 chr2B.!!$F1 619
9 TraesCS2D01G321600 chr2B 486741522 486742676 1154 False 221.666667 300 82.425667 1007 2476 3 chr2B.!!$F3 1469
10 TraesCS2D01G321600 chr6D 458064272 458065557 1285 True 779.000000 856 97.605000 2936 3837 2 chr6D.!!$R1 901
11 TraesCS2D01G321600 chr1D 49428748 49429991 1243 True 488.666667 837 97.408667 2932 3837 3 chr1D.!!$R1 905
12 TraesCS2D01G321600 chr4A 149099028 149099555 527 True 490.000000 490 84.444000 3335 3841 1 chr4A.!!$R1 506
13 TraesCS2D01G321600 chr3D 6469955 6471332 1377 False 341.000000 459 87.761333 2935 3841 3 chr3D.!!$F1 906
14 TraesCS2D01G321600 chr1A 497896637 497897891 1254 False 281.000000 433 87.955333 2935 3837 3 chr1A.!!$F1 902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1054 1.789739 CTGCTCTTTGAAACGCGCG 60.790 57.895 30.96 30.96 0.0 6.86 F
1460 1601 0.253610 ATTACCCCCGAAACATCGCA 59.746 50.000 0.00 0.00 0.0 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2823 6715 2.430465 TGGAGAACTTGAAGAGCATGC 58.570 47.619 10.51 10.51 0.00 4.06 R
3355 7778 0.037326 TCACGCAGGAGCCTAAACAG 60.037 55.000 0.00 0.00 37.52 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 3.071874 TGTCCGGCAATTCTTCTGATT 57.928 42.857 0.00 0.00 0.00 2.57
103 104 1.815421 GCATTCGACATGCCGGTCT 60.815 57.895 16.79 0.00 39.01 3.85
129 130 5.865552 GTCAGTCGTAGTTACTGCCAATAAA 59.134 40.000 0.00 0.00 43.30 1.40
275 277 4.720649 TTTTTGAAATGTTGGGACGTCA 57.279 36.364 18.91 0.00 0.00 4.35
325 328 4.508124 ACGATGAAATGTTATCTCGCTTCC 59.492 41.667 0.00 0.00 0.00 3.46
365 368 3.262151 TGTATCTTGGGGTGTCGAAATCA 59.738 43.478 0.00 0.00 0.00 2.57
372 375 3.244596 TGGGGTGTCGAAATCAACATGTA 60.245 43.478 0.00 0.00 0.00 2.29
373 376 3.945285 GGGGTGTCGAAATCAACATGTAT 59.055 43.478 0.00 0.00 0.00 2.29
400 404 8.738645 ATTACTCTTATCCCAACATCAACTTC 57.261 34.615 0.00 0.00 0.00 3.01
489 505 6.901081 TGTCTCTCAGTCTGATTGAACTTA 57.099 37.500 2.22 0.00 0.00 2.24
546 562 5.921962 AGATTTTGCCTGAAGGAAATACC 57.078 39.130 0.00 0.00 37.39 2.73
707 807 2.624838 CGCCCTAAACTAACGGGAGATA 59.375 50.000 0.00 0.00 39.80 1.98
954 1054 1.789739 CTGCTCTTTGAAACGCGCG 60.790 57.895 30.96 30.96 0.00 6.86
1016 1121 0.393537 ACAATGGCTAGAGCTGCACC 60.394 55.000 1.02 0.00 41.70 5.01
1110 1218 2.341846 ACGGGCTCAAGAACAAGAAA 57.658 45.000 0.00 0.00 0.00 2.52
1199 1307 0.258774 GGTATGGTCATGGCTGGGTT 59.741 55.000 0.00 0.00 0.00 4.11
1276 1389 1.145571 TCTTGTTGCTTAGGGGGTGT 58.854 50.000 0.00 0.00 0.00 4.16
1376 1496 6.073222 TCACGAATTCCTCTGTTTTTAAGCTC 60.073 38.462 0.00 0.00 0.00 4.09
1389 1509 0.736325 TAAGCTCTCGCCGTTTCAGC 60.736 55.000 0.00 0.00 36.60 4.26
1390 1510 2.715532 AAGCTCTCGCCGTTTCAGCA 62.716 55.000 0.00 0.00 36.60 4.41
1416 1541 7.039293 ACGGTAGATATACCTATGCATTGTTGA 60.039 37.037 14.43 0.00 37.96 3.18
1447 1588 3.067461 TGTTGTTGTTGCACTGATTACCC 59.933 43.478 0.00 0.00 0.00 3.69
1460 1601 0.253610 ATTACCCCCGAAACATCGCA 59.746 50.000 0.00 0.00 0.00 5.10
1468 1609 2.418628 CCCGAAACATCGCACTTATGTT 59.581 45.455 0.00 0.00 46.77 2.71
1515 1675 4.439776 CGCACAGCTAAAAGGTAAAACAAC 59.560 41.667 0.00 0.00 0.00 3.32
1559 1721 2.159841 CGAGAAACTGTAACATGCGGTG 60.160 50.000 0.00 0.00 0.00 4.94
1793 1986 3.311596 GGCAATAACTCCATTCACGGTAC 59.688 47.826 0.00 0.00 0.00 3.34
1794 1987 4.189231 GCAATAACTCCATTCACGGTACT 58.811 43.478 0.00 0.00 0.00 2.73
1795 1988 5.353938 GCAATAACTCCATTCACGGTACTA 58.646 41.667 0.00 0.00 0.00 1.82
1804 1997 3.520290 TTCACGGTACTATGCTTCAGG 57.480 47.619 0.00 0.00 0.00 3.86
1850 2071 1.090052 GGGAGTGACCATGCGCTAAC 61.090 60.000 9.73 0.00 41.20 2.34
2120 4992 6.951971 ACTACAGCTTATCCAAGAAGTCAAT 58.048 36.000 0.00 0.00 33.20 2.57
2121 4993 7.044798 ACTACAGCTTATCCAAGAAGTCAATC 58.955 38.462 0.00 0.00 33.20 2.67
2122 4994 5.809001 ACAGCTTATCCAAGAAGTCAATCA 58.191 37.500 0.00 0.00 33.20 2.57
2123 4995 6.240894 ACAGCTTATCCAAGAAGTCAATCAA 58.759 36.000 0.00 0.00 33.20 2.57
2533 6413 2.134287 CATGGAGATCGTCCCCGGT 61.134 63.158 0.00 0.00 46.31 5.28
2823 6715 2.325082 GCCAGGTGTACAAGCACGG 61.325 63.158 0.00 0.00 40.08 4.94
2851 6743 5.352846 GCTCTTCAAGTTCTCCAATTAGGTC 59.647 44.000 0.00 0.00 39.02 3.85
2881 6776 1.168407 CCTGATTGGCGCTGTATGGG 61.168 60.000 7.64 0.00 0.00 4.00
2918 6813 7.058525 TCTTGAGTATCCTCATTGCAATGAAT 58.941 34.615 34.91 28.75 46.80 2.57
2955 6850 6.463995 TTTGAGTAAAATGCACTTCTGGTT 57.536 33.333 0.00 0.00 0.00 3.67
3004 6899 4.412843 TGGTCACTGTACTCAGGAATACA 58.587 43.478 0.00 0.00 45.14 2.29
3021 6916 5.975939 GGAATACAGTCAATACGGTCACTAC 59.024 44.000 0.00 0.00 35.53 2.73
3079 6974 4.304110 TCGCATAGTTCCGTATTTCATCC 58.696 43.478 0.00 0.00 0.00 3.51
3153 7049 0.252103 GGTCCTACCTGTCAGTGGGA 60.252 60.000 0.00 1.72 44.36 4.37
3155 7051 1.081481 TCCTACCTGTCAGTGGGAGA 58.919 55.000 0.00 0.00 41.98 3.71
3156 7052 1.431633 TCCTACCTGTCAGTGGGAGAA 59.568 52.381 0.00 0.00 41.98 2.87
3157 7053 2.158219 TCCTACCTGTCAGTGGGAGAAA 60.158 50.000 0.00 0.00 41.98 2.52
3158 7054 2.840651 CCTACCTGTCAGTGGGAGAAAT 59.159 50.000 0.00 0.00 40.71 2.17
3159 7055 4.030913 CCTACCTGTCAGTGGGAGAAATA 58.969 47.826 0.00 0.00 40.71 1.40
3160 7056 4.469945 CCTACCTGTCAGTGGGAGAAATAA 59.530 45.833 0.00 0.00 40.71 1.40
3161 7057 4.559862 ACCTGTCAGTGGGAGAAATAAG 57.440 45.455 0.00 0.00 0.00 1.73
3162 7058 3.274288 CCTGTCAGTGGGAGAAATAAGC 58.726 50.000 0.00 0.00 0.00 3.09
3163 7059 3.307691 CCTGTCAGTGGGAGAAATAAGCA 60.308 47.826 0.00 0.00 0.00 3.91
3164 7060 3.937706 CTGTCAGTGGGAGAAATAAGCAG 59.062 47.826 0.00 0.00 0.00 4.24
3165 7061 3.582647 TGTCAGTGGGAGAAATAAGCAGA 59.417 43.478 0.00 0.00 0.00 4.26
3166 7062 4.187694 GTCAGTGGGAGAAATAAGCAGAG 58.812 47.826 0.00 0.00 0.00 3.35
3167 7063 2.941720 CAGTGGGAGAAATAAGCAGAGC 59.058 50.000 0.00 0.00 0.00 4.09
3168 7064 1.936547 GTGGGAGAAATAAGCAGAGCG 59.063 52.381 0.00 0.00 0.00 5.03
3169 7065 1.134401 TGGGAGAAATAAGCAGAGCGG 60.134 52.381 0.00 0.00 0.00 5.52
3170 7066 1.139058 GGGAGAAATAAGCAGAGCGGA 59.861 52.381 0.00 0.00 0.00 5.54
3171 7067 2.420129 GGGAGAAATAAGCAGAGCGGAA 60.420 50.000 0.00 0.00 0.00 4.30
3172 7068 3.270877 GGAGAAATAAGCAGAGCGGAAA 58.729 45.455 0.00 0.00 0.00 3.13
3173 7069 3.879892 GGAGAAATAAGCAGAGCGGAAAT 59.120 43.478 0.00 0.00 0.00 2.17
3174 7070 5.057149 GGAGAAATAAGCAGAGCGGAAATA 58.943 41.667 0.00 0.00 0.00 1.40
3175 7071 5.527582 GGAGAAATAAGCAGAGCGGAAATAA 59.472 40.000 0.00 0.00 0.00 1.40
3185 7081 6.599638 AGCAGAGCGGAAATAAAGAAATAAGT 59.400 34.615 0.00 0.00 0.00 2.24
3355 7778 9.530633 CCAGTAGTTCATAAGTACTATTTCACC 57.469 37.037 0.00 0.00 43.89 4.02
3399 7822 1.068588 CGAGCCGATCCATCCAAACTA 59.931 52.381 0.00 0.00 0.00 2.24
3713 8174 6.423905 GTCAAATAGATGCAATACGGAGCTAA 59.576 38.462 0.00 0.00 37.49 3.09
3823 8284 8.150945 AGCTTATACGATAAGTTCAATGACCAT 58.849 33.333 12.90 0.00 0.00 3.55
3837 8298 6.862209 TCAATGACCATAAGTGCATTTTACC 58.138 36.000 0.00 0.00 29.36 2.85
3841 8302 6.486056 TGACCATAAGTGCATTTTACCCTTA 58.514 36.000 0.00 0.00 0.00 2.69
3842 8303 7.122715 TGACCATAAGTGCATTTTACCCTTAT 58.877 34.615 0.00 0.00 0.00 1.73
3843 8304 7.284489 TGACCATAAGTGCATTTTACCCTTATC 59.716 37.037 0.00 0.00 0.00 1.75
3844 8305 7.354312 ACCATAAGTGCATTTTACCCTTATCT 58.646 34.615 0.00 0.00 0.00 1.98
3845 8306 7.839200 ACCATAAGTGCATTTTACCCTTATCTT 59.161 33.333 0.00 0.00 0.00 2.40
3846 8307 8.695456 CCATAAGTGCATTTTACCCTTATCTTT 58.305 33.333 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.887996 TCCATGAAATGTTTATCAAGCAAAC 57.112 32.000 0.00 0.00 44.81 2.93
83 84 1.643868 GACCGGCATGTCGAATGCAA 61.644 55.000 23.62 0.00 46.21 4.08
129 130 8.038944 AGAAACAGTATATCAAATACACACGGT 58.961 33.333 0.00 0.00 0.00 4.83
176 177 1.735571 GCGCACCGAATTTCTTAGGAA 59.264 47.619 0.30 0.00 31.99 3.36
200 201 1.816074 TTACAAAACCCTGCCTAGCG 58.184 50.000 0.00 0.00 0.00 4.26
425 429 7.254727 GCTTCCAAACAAAAAGAAACATGCATA 60.255 33.333 0.00 0.00 0.00 3.14
426 430 6.458615 GCTTCCAAACAAAAAGAAACATGCAT 60.459 34.615 0.00 0.00 0.00 3.96
427 431 5.163774 GCTTCCAAACAAAAAGAAACATGCA 60.164 36.000 0.00 0.00 0.00 3.96
428 432 5.163774 TGCTTCCAAACAAAAAGAAACATGC 60.164 36.000 0.00 0.00 0.00 4.06
429 433 6.313411 TCTGCTTCCAAACAAAAAGAAACATG 59.687 34.615 0.00 0.00 0.00 3.21
493 509 6.655003 CCCAAACAAAGATTAGCAGTAGAAGA 59.345 38.462 0.00 0.00 0.00 2.87
496 512 5.876357 ACCCAAACAAAGATTAGCAGTAGA 58.124 37.500 0.00 0.00 0.00 2.59
546 562 5.007430 GGTACACATCATTTCTGAGATGCAG 59.993 44.000 3.44 1.75 44.16 4.41
625 725 4.386312 CCATTCTCCCATTAGTTTAGGGCA 60.386 45.833 0.00 0.00 42.52 5.36
707 807 3.429410 GCTAATCCCAAATTGCTCGCTTT 60.429 43.478 0.00 0.00 0.00 3.51
954 1054 0.251354 TGAGATGAGCCTGCTGGTTC 59.749 55.000 17.90 17.90 42.93 3.62
1110 1218 2.511637 GACCTTGATGGAGAAATCCCCT 59.488 50.000 0.00 0.00 39.71 4.79
1199 1307 4.282496 TGGGTACTTGGAAGCAAGAAAAA 58.718 39.130 0.00 0.00 36.16 1.94
1447 1588 2.006888 ACATAAGTGCGATGTTTCGGG 58.993 47.619 0.00 0.00 45.59 5.14
1468 1609 9.658475 GCGTGTTTATATGTCAAGCAATAATAA 57.342 29.630 0.00 0.00 36.79 1.40
1469 1610 8.831550 TGCGTGTTTATATGTCAAGCAATAATA 58.168 29.630 11.91 0.00 41.62 0.98
1470 1611 7.643764 GTGCGTGTTTATATGTCAAGCAATAAT 59.356 33.333 14.40 0.00 44.60 1.28
1515 1675 5.229469 CGTTATTACAGTTTCTACCTCTGCG 59.771 44.000 0.00 0.00 33.12 5.18
1571 1733 4.650972 AGAACCCTTGCATTTGGTACTA 57.349 40.909 3.07 0.00 0.00 1.82
1572 1734 3.525800 AGAACCCTTGCATTTGGTACT 57.474 42.857 3.07 0.00 0.00 2.73
1573 1735 4.600692 AAAGAACCCTTGCATTTGGTAC 57.399 40.909 3.07 0.00 31.91 3.34
1941 2162 3.698040 GGTAGAAGAAGGTGATGTACGGA 59.302 47.826 0.00 0.00 0.00 4.69
2101 4970 7.951347 ATTTGATTGACTTCTTGGATAAGCT 57.049 32.000 0.00 0.00 33.82 3.74
2823 6715 2.430465 TGGAGAACTTGAAGAGCATGC 58.570 47.619 10.51 10.51 0.00 4.06
2881 6776 6.004408 GGATACTCAAGAGAGGATAACGAC 57.996 45.833 3.73 0.00 45.67 4.34
2949 6844 7.654520 GCGTATACAATAAGTCCAATAACCAGA 59.345 37.037 3.32 0.00 0.00 3.86
2955 6850 7.948357 AGTGAGCGTATACAATAAGTCCAATA 58.052 34.615 3.32 0.00 0.00 1.90
3004 6899 6.096423 ACATGTATGTAGTGACCGTATTGACT 59.904 38.462 0.00 0.00 39.68 3.41
3021 6916 6.929049 ACCGTATAATCACCTCAACATGTATG 59.071 38.462 0.00 0.00 0.00 2.39
3153 7049 6.823689 TCTTTATTTCCGCTCTGCTTATTTCT 59.176 34.615 0.00 0.00 0.00 2.52
3155 7051 7.391148 TTCTTTATTTCCGCTCTGCTTATTT 57.609 32.000 0.00 0.00 0.00 1.40
3156 7052 7.391148 TTTCTTTATTTCCGCTCTGCTTATT 57.609 32.000 0.00 0.00 0.00 1.40
3157 7053 7.573968 ATTTCTTTATTTCCGCTCTGCTTAT 57.426 32.000 0.00 0.00 0.00 1.73
3158 7054 8.500753 TTATTTCTTTATTTCCGCTCTGCTTA 57.499 30.769 0.00 0.00 0.00 3.09
3159 7055 5.904362 ATTTCTTTATTTCCGCTCTGCTT 57.096 34.783 0.00 0.00 0.00 3.91
3160 7056 6.599638 ACTTATTTCTTTATTTCCGCTCTGCT 59.400 34.615 0.00 0.00 0.00 4.24
3161 7057 6.786207 ACTTATTTCTTTATTTCCGCTCTGC 58.214 36.000 0.00 0.00 0.00 4.26
3162 7058 9.314321 TCTACTTATTTCTTTATTTCCGCTCTG 57.686 33.333 0.00 0.00 0.00 3.35
3163 7059 9.535878 CTCTACTTATTTCTTTATTTCCGCTCT 57.464 33.333 0.00 0.00 0.00 4.09
3164 7060 8.277018 GCTCTACTTATTTCTTTATTTCCGCTC 58.723 37.037 0.00 0.00 0.00 5.03
3165 7061 7.042658 CGCTCTACTTATTTCTTTATTTCCGCT 60.043 37.037 0.00 0.00 0.00 5.52
3166 7062 7.042925 TCGCTCTACTTATTTCTTTATTTCCGC 60.043 37.037 0.00 0.00 0.00 5.54
3167 7063 8.348983 TCGCTCTACTTATTTCTTTATTTCCG 57.651 34.615 0.00 0.00 0.00 4.30
3355 7778 0.037326 TCACGCAGGAGCCTAAACAG 60.037 55.000 0.00 0.00 37.52 3.16
3399 7822 4.152402 GCATTAGCATGGACGACGATTTAT 59.848 41.667 0.00 0.00 41.58 1.40
3477 7906 3.842820 CTCGCATCGATCAATAGACCAT 58.157 45.455 0.00 0.00 34.61 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.