Multiple sequence alignment - TraesCS2D01G321400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G321400 chr2D 100.000 7525 0 0 1 7525 412840075 412832551 0.000000e+00 13897.0
1 TraesCS2D01G321400 chr2D 93.220 59 4 0 2774 2832 412837208 412837150 3.740000e-13 87.9
2 TraesCS2D01G321400 chr2D 93.220 59 4 0 2868 2926 412837302 412837244 3.740000e-13 87.9
3 TraesCS2D01G321400 chr2A 95.414 5059 170 24 1 5032 580024448 580019425 0.000000e+00 8000.0
4 TraesCS2D01G321400 chr2A 92.623 1708 58 10 5094 6770 580019424 580017754 0.000000e+00 2394.0
5 TraesCS2D01G321400 chr2A 88.034 585 31 16 6959 7525 579972604 579972041 0.000000e+00 656.0
6 TraesCS2D01G321400 chr2A 92.500 80 3 2 6773 6851 580017776 580017699 2.220000e-20 111.0
7 TraesCS2D01G321400 chr2A 96.610 59 2 0 2774 2832 580021580 580021522 1.730000e-16 99.0
8 TraesCS2D01G321400 chr2B 95.482 3165 96 15 1397 4535 486196407 486193264 0.000000e+00 5009.0
9 TraesCS2D01G321400 chr2B 91.885 2292 78 35 4515 6770 486193249 486191030 0.000000e+00 3103.0
10 TraesCS2D01G321400 chr2B 93.020 831 41 9 474 1293 486197259 486196435 0.000000e+00 1197.0
11 TraesCS2D01G321400 chr2B 92.890 647 20 7 6888 7525 486117858 486117229 0.000000e+00 917.0
12 TraesCS2D01G321400 chr2B 92.825 223 15 1 1 222 486199928 486199706 9.420000e-84 322.0
13 TraesCS2D01G321400 chr2B 89.600 250 14 6 214 458 486199678 486199436 2.640000e-79 307.0
14 TraesCS2D01G321400 chr2B 98.214 56 1 0 6776 6831 486191049 486190994 1.730000e-16 99.0
15 TraesCS2D01G321400 chr2B 98.113 53 1 0 2780 2832 486194930 486194878 8.040000e-15 93.5
16 TraesCS2D01G321400 chr2B 91.525 59 3 1 2868 2926 486195028 486194972 6.260000e-11 80.5
17 TraesCS2D01G321400 chr4B 84.793 217 27 6 3520 3732 26251980 26251766 5.910000e-51 213.0
18 TraesCS2D01G321400 chr4B 84.793 217 26 7 3520 3732 26170550 26170337 2.130000e-50 211.0
19 TraesCS2D01G321400 chr4B 84.404 218 27 7 3520 3732 25992244 25992029 2.750000e-49 207.0
20 TraesCS2D01G321400 chr4B 84.332 217 28 6 3520 3732 26032597 26032383 2.750000e-49 207.0
21 TraesCS2D01G321400 chr4B 84.332 217 28 6 3520 3732 26128639 26128425 2.750000e-49 207.0
22 TraesCS2D01G321400 chr4B 84.332 217 28 6 3520 3732 26212428 26212214 2.750000e-49 207.0
23 TraesCS2D01G321400 chr4B 84.332 217 28 6 3520 3732 26293830 26293616 2.750000e-49 207.0
24 TraesCS2D01G321400 chr4A 85.556 90 11 1 2943 3030 586778377 586778466 8.040000e-15 93.5
25 TraesCS2D01G321400 chr4D 92.727 55 4 0 3241 3295 504189472 504189526 6.260000e-11 80.5
26 TraesCS2D01G321400 chr6B 87.143 70 6 1 3782 3851 669022781 669022847 8.100000e-10 76.8
27 TraesCS2D01G321400 chr6B 87.143 70 6 1 3782 3851 669030433 669030499 8.100000e-10 76.8
28 TraesCS2D01G321400 chr3D 95.238 42 2 0 2734 2775 26665206 26665247 4.870000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G321400 chr2D 412832551 412840075 7524 True 4690.933333 13897 95.48000 1 7525 3 chr2D.!!$R1 7524
1 TraesCS2D01G321400 chr2A 580017699 580024448 6749 True 2651.000000 8000 94.28675 1 6851 4 chr2A.!!$R2 6850
2 TraesCS2D01G321400 chr2A 579972041 579972604 563 True 656.000000 656 88.03400 6959 7525 1 chr2A.!!$R1 566
3 TraesCS2D01G321400 chr2B 486190994 486199928 8934 True 1276.375000 5009 93.83300 1 6831 8 chr2B.!!$R2 6830
4 TraesCS2D01G321400 chr2B 486117229 486117858 629 True 917.000000 917 92.89000 6888 7525 1 chr2B.!!$R1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 428 0.237498 GTTTCGGCACAGCACTTACC 59.763 55.000 0.00 0.00 0.00 2.85 F
613 2827 0.321298 CCCTCGGTGGAAAACGACAT 60.321 55.000 0.00 0.00 38.35 3.06 F
683 2897 0.324645 GCCTTCCCCCACATGACAAT 60.325 55.000 0.00 0.00 0.00 2.71 F
1116 3342 1.222936 GGGTGAGCCACTCCATCAG 59.777 63.158 0.00 0.00 34.40 2.90 F
1468 3714 1.238439 TTAGCTTCCACTGTGCTTGC 58.762 50.000 1.29 5.73 38.15 4.01 F
2753 5000 2.017782 TGTTTTCGTAAGCTTGGTGCA 58.982 42.857 9.86 0.00 45.94 4.57 F
3728 5977 1.019805 GTAGGCCTGCTGGTTCGAAC 61.020 60.000 20.14 20.14 35.27 3.95 F
4855 7147 0.901827 TGCATAGGAACCTGCTTCGA 59.098 50.000 3.36 0.00 38.19 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1246 3472 1.135402 CATGGGCGGAAACTTGCTAAC 60.135 52.381 0.00 0.00 0.00 2.34 R
2547 4794 3.059597 GTCGACACACAAAAGATCACCTG 60.060 47.826 11.55 0.00 0.00 4.00 R
2778 5025 3.005791 GCTATGTTCTGCAAACCCAAGTT 59.994 43.478 8.60 0.00 38.03 2.66 R
2883 5130 4.383850 ACTCAGCACAGCTATGTTCTAG 57.616 45.455 0.00 0.00 37.65 2.43 R
3410 5658 1.754226 GAACCAGAAAAACAGGGCACA 59.246 47.619 0.00 0.00 0.00 4.57 R
4593 6885 1.836166 CTGGATCCTCCTCAGCTGAAA 59.164 52.381 18.85 8.06 37.46 2.69 R
5061 7353 2.293399 GTCCCGACTTGATTTTGCTTGT 59.707 45.455 0.00 0.00 0.00 3.16 R
6886 9220 0.317603 CACGGGTTAGCGGTCGATAG 60.318 60.000 0.00 0.00 0.00 2.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 143 4.521062 GATCGCCTGCTGCCGTCT 62.521 66.667 0.00 0.00 36.24 4.18
374 428 0.237498 GTTTCGGCACAGCACTTACC 59.763 55.000 0.00 0.00 0.00 2.85
381 435 2.044946 CAGCACTTACCCTGCCCC 60.045 66.667 0.00 0.00 35.01 5.80
437 491 0.950836 TCGGTTACTCGTGGTCGAAA 59.049 50.000 0.00 0.00 45.61 3.46
613 2827 0.321298 CCCTCGGTGGAAAACGACAT 60.321 55.000 0.00 0.00 38.35 3.06
629 2843 2.527100 GACATCCACCGTAGAGAAACG 58.473 52.381 0.00 0.00 42.49 3.60
635 2849 4.808649 CGTAGAGAAACGGGCTCC 57.191 61.111 0.00 0.00 39.19 4.70
652 2866 4.003788 CCCTTCACCGACCTGCGT 62.004 66.667 0.00 0.00 38.67 5.24
682 2896 1.076549 GCCTTCCCCCACATGACAA 59.923 57.895 0.00 0.00 0.00 3.18
683 2897 0.324645 GCCTTCCCCCACATGACAAT 60.325 55.000 0.00 0.00 0.00 2.71
818 3033 3.861840 TCTCCAGCTGAAAAATACTCCG 58.138 45.455 17.39 0.00 0.00 4.63
980 3195 1.723870 GTATGCTGCGGCTTTGAGG 59.276 57.895 20.27 0.00 39.59 3.86
1116 3342 1.222936 GGGTGAGCCACTCCATCAG 59.777 63.158 0.00 0.00 34.40 2.90
1130 3356 7.212274 CCACTCCATCAGTTTTCTCAATTTTT 58.788 34.615 0.00 0.00 30.26 1.94
1131 3357 7.383300 CCACTCCATCAGTTTTCTCAATTTTTC 59.617 37.037 0.00 0.00 30.26 2.29
1306 3535 6.697641 TTTCCTGTTAGTGGAAGGTCTTAT 57.302 37.500 0.00 0.00 43.48 1.73
1314 3543 5.793030 AGTGGAAGGTCTTATAATCTCCG 57.207 43.478 0.00 0.00 0.00 4.63
1346 3575 7.284034 CAGCTTTCATGGATTATGTAGGTTCTT 59.716 37.037 0.00 0.00 38.01 2.52
1422 3652 4.708177 TCTCTATGGCTGATAACTTTGGC 58.292 43.478 0.00 0.00 0.00 4.52
1468 3714 1.238439 TTAGCTTCCACTGTGCTTGC 58.762 50.000 1.29 5.73 38.15 4.01
1492 3738 7.098477 GCCCCAACTACGGTTTAAAATAAAAT 58.902 34.615 0.00 0.00 32.73 1.82
1563 3809 7.589958 TTATGCTTAAACTGGTTTTCTGGAA 57.410 32.000 4.01 0.00 34.23 3.53
1643 3889 2.352651 CACCACCGCACATATTTCTCTG 59.647 50.000 0.00 0.00 0.00 3.35
1663 3909 5.871539 TCTGTGTTTGAACCTTTCGTAAAC 58.128 37.500 0.00 0.00 33.20 2.01
1678 3924 7.484959 CCTTTCGTAAACATAATCTTGCCTTTC 59.515 37.037 0.00 0.00 0.00 2.62
1691 3937 7.622893 ATCTTGCCTTTCTTCACTTAGATTC 57.377 36.000 0.00 0.00 0.00 2.52
1728 3974 8.451748 GGGCTTTAACTGAACTAGTAGAATTTG 58.548 37.037 3.59 0.00 39.18 2.32
1765 4011 6.975772 GCAGAACTAGTATTCTTCTGGTGTAG 59.024 42.308 18.63 0.00 36.78 2.74
1766 4012 7.363094 GCAGAACTAGTATTCTTCTGGTGTAGT 60.363 40.741 18.63 0.00 36.78 2.73
1770 4016 9.750783 AACTAGTATTCTTCTGGTGTAGTAAGA 57.249 33.333 0.00 0.00 0.00 2.10
1771 4017 9.750783 ACTAGTATTCTTCTGGTGTAGTAAGAA 57.249 33.333 0.00 0.00 37.17 2.52
1816 4062 9.276590 TCTGTCTATGGTCATAATAATTTGCTG 57.723 33.333 0.00 0.00 0.00 4.41
1824 4070 7.920151 TGGTCATAATAATTTGCTGTGCATTAC 59.080 33.333 0.00 0.00 38.76 1.89
1939 4185 9.050601 CAAAAATGTATTTGCTTTACCTTTGGA 57.949 29.630 0.00 0.00 33.90 3.53
2013 4259 4.693283 TGAAGCTAAATATGAGGACCACG 58.307 43.478 0.00 0.00 0.00 4.94
2027 4273 3.886505 AGGACCACGTTTATTCTTGCAAA 59.113 39.130 0.00 0.00 0.00 3.68
2234 4480 8.849168 CAAAATGGGAGCTGTATATTTGTATGA 58.151 33.333 0.00 0.00 0.00 2.15
2753 5000 2.017782 TGTTTTCGTAAGCTTGGTGCA 58.982 42.857 9.86 0.00 45.94 4.57
2883 5130 6.575162 AAATGAGTACATGACTTGGGTTTC 57.425 37.500 0.00 0.00 39.06 2.78
2884 5131 4.974645 TGAGTACATGACTTGGGTTTCT 57.025 40.909 0.00 0.00 39.06 2.52
2937 5184 8.438676 ACAAAATGAGTAATCTACATACCTGC 57.561 34.615 0.00 0.00 0.00 4.85
2945 5192 3.526931 TCTACATACCTGCACTGCTTC 57.473 47.619 1.98 0.00 0.00 3.86
2959 5207 4.742659 GCACTGCTTCGGTTTTCAATAAAA 59.257 37.500 0.00 0.00 32.15 1.52
3046 5294 4.579869 TCTCCTACAGATTTTGGAAGTGC 58.420 43.478 0.00 0.00 0.00 4.40
3091 5339 9.599866 TGAGATCCTACATTGTGTAGTTTTATG 57.400 33.333 14.12 1.03 46.68 1.90
3414 5662 7.862372 ACGAATATAATTGTCAATTCCATGTGC 59.138 33.333 14.07 0.78 32.38 4.57
3528 5776 3.978855 CACAATAAAGATGCATCATGGCG 59.021 43.478 27.81 13.67 36.28 5.69
3558 5806 4.274705 TGCATTTGTACGAGCTTTTCTTCA 59.725 37.500 0.00 0.00 0.00 3.02
3672 5921 8.707796 TCTAGTTACAATGGAGGGTAATCTAG 57.292 38.462 0.80 0.80 35.46 2.43
3728 5977 1.019805 GTAGGCCTGCTGGTTCGAAC 61.020 60.000 20.14 20.14 35.27 3.95
4016 6272 7.127032 AGGGATCTATCAAACAACAATCTCTCT 59.873 37.037 0.00 0.00 0.00 3.10
4212 6468 1.202940 GCACCTCCTTTTTCTCCACCT 60.203 52.381 0.00 0.00 0.00 4.00
4215 6471 1.705186 CCTCCTTTTTCTCCACCTCCA 59.295 52.381 0.00 0.00 0.00 3.86
4252 6508 4.690719 CACCCGCGGCACAAGGTA 62.691 66.667 22.85 0.00 0.00 3.08
4374 6630 6.071221 TGTGCTTGCTGGAATAATTCAATTCT 60.071 34.615 0.00 0.00 36.34 2.40
4376 6632 6.071221 TGCTTGCTGGAATAATTCAATTCTGT 60.071 34.615 0.00 0.00 36.34 3.41
4738 7030 1.067776 GTGTACAAGGGGAGACTGACG 60.068 57.143 0.00 0.00 0.00 4.35
4816 7108 5.560953 CGAACTCCAATTCCAAACAGAAGTC 60.561 44.000 0.00 0.00 0.00 3.01
4855 7147 0.901827 TGCATAGGAACCTGCTTCGA 59.098 50.000 3.36 0.00 38.19 3.71
4944 7236 1.006832 GCATCACGTTTGCGAGGTAT 58.993 50.000 4.62 0.00 42.00 2.73
4945 7237 1.267532 GCATCACGTTTGCGAGGTATG 60.268 52.381 4.62 0.00 42.00 2.39
4946 7238 2.267426 CATCACGTTTGCGAGGTATGA 58.733 47.619 0.00 0.00 42.00 2.15
4948 7240 2.967362 TCACGTTTGCGAGGTATGAAT 58.033 42.857 0.00 0.00 42.00 2.57
4951 7243 2.676342 ACGTTTGCGAGGTATGAATTCC 59.324 45.455 2.27 0.00 42.00 3.01
4952 7244 2.936498 CGTTTGCGAGGTATGAATTCCT 59.064 45.455 2.27 0.00 41.33 3.36
4960 7252 5.585047 GCGAGGTATGAATTCCTTTGTACTT 59.415 40.000 2.27 0.00 33.83 2.24
5019 7311 6.982160 TTTGACCAACTGTAGACCTAGTTA 57.018 37.500 0.00 0.00 35.50 2.24
5034 7326 8.974060 AGACCTAGTTATCTCTTTCTCTGTAG 57.026 38.462 0.00 0.00 0.00 2.74
5090 7382 0.756294 TCAAGTCGGGACAGCAAGAA 59.244 50.000 1.17 0.00 0.00 2.52
5099 7391 3.248602 CGGGACAGCAAGAATAATACTGC 59.751 47.826 0.00 0.00 31.46 4.40
5107 7399 5.067023 AGCAAGAATAATACTGCCAAAGCTC 59.933 40.000 0.00 0.00 40.80 4.09
5108 7400 5.163622 GCAAGAATAATACTGCCAAAGCTCA 60.164 40.000 0.00 0.00 40.80 4.26
5127 7419 9.869757 AAAGCTCAACTTTAAACTGTTTAATGT 57.130 25.926 26.14 26.14 46.95 2.71
5254 7548 3.452474 ACGACTCTGAGCTTCATTATGC 58.548 45.455 4.19 0.00 0.00 3.14
5285 7601 4.662468 TGCAAATCCAACTGCACTAAAA 57.338 36.364 0.00 0.00 43.44 1.52
5331 7647 0.460635 TAAGTTCGCGTGCCCCATAC 60.461 55.000 5.77 0.00 0.00 2.39
5332 7648 2.435234 GTTCGCGTGCCCCATACA 60.435 61.111 5.77 0.00 0.00 2.29
5335 7651 0.394938 TTCGCGTGCCCCATACATAT 59.605 50.000 5.77 0.00 0.00 1.78
5336 7652 0.320334 TCGCGTGCCCCATACATATG 60.320 55.000 5.77 0.00 0.00 1.78
5358 7674 3.341823 ACCTGTGAATGTGATCAGAAGC 58.658 45.455 0.00 0.00 0.00 3.86
5359 7675 3.244665 ACCTGTGAATGTGATCAGAAGCA 60.245 43.478 0.00 0.00 0.00 3.91
5360 7676 3.945921 CCTGTGAATGTGATCAGAAGCAT 59.054 43.478 0.00 0.00 0.00 3.79
5361 7677 5.121105 CCTGTGAATGTGATCAGAAGCATA 58.879 41.667 0.00 0.00 0.00 3.14
5362 7678 5.763698 CCTGTGAATGTGATCAGAAGCATAT 59.236 40.000 0.00 0.00 0.00 1.78
5363 7679 6.073167 CCTGTGAATGTGATCAGAAGCATATC 60.073 42.308 0.00 0.00 0.00 1.63
5364 7680 5.761726 TGTGAATGTGATCAGAAGCATATCC 59.238 40.000 0.00 0.00 0.00 2.59
5365 7681 5.761726 GTGAATGTGATCAGAAGCATATCCA 59.238 40.000 0.00 0.00 0.00 3.41
5366 7682 5.761726 TGAATGTGATCAGAAGCATATCCAC 59.238 40.000 0.00 0.00 0.00 4.02
5367 7683 5.563876 ATGTGATCAGAAGCATATCCACT 57.436 39.130 0.00 0.00 0.00 4.00
5368 7684 6.676990 ATGTGATCAGAAGCATATCCACTA 57.323 37.500 0.00 0.00 0.00 2.74
5369 7685 6.094193 TGTGATCAGAAGCATATCCACTAG 57.906 41.667 0.00 0.00 0.00 2.57
5370 7686 5.835280 TGTGATCAGAAGCATATCCACTAGA 59.165 40.000 0.00 0.00 0.00 2.43
5371 7687 6.496218 TGTGATCAGAAGCATATCCACTAGAT 59.504 38.462 0.00 0.00 39.15 1.98
5372 7688 7.015974 TGTGATCAGAAGCATATCCACTAGATT 59.984 37.037 0.00 0.00 36.33 2.40
5373 7689 8.526978 GTGATCAGAAGCATATCCACTAGATTA 58.473 37.037 0.00 0.00 36.33 1.75
5374 7690 9.264653 TGATCAGAAGCATATCCACTAGATTAT 57.735 33.333 0.00 0.00 36.33 1.28
5375 7691 9.748708 GATCAGAAGCATATCCACTAGATTATC 57.251 37.037 0.00 0.00 36.33 1.75
5376 7692 8.072321 TCAGAAGCATATCCACTAGATTATCC 57.928 38.462 0.00 0.00 36.33 2.59
5377 7693 7.675619 TCAGAAGCATATCCACTAGATTATCCA 59.324 37.037 0.00 0.00 36.33 3.41
5378 7694 7.763528 CAGAAGCATATCCACTAGATTATCCAC 59.236 40.741 0.00 0.00 36.33 4.02
5379 7695 7.455953 AGAAGCATATCCACTAGATTATCCACA 59.544 37.037 0.00 0.00 36.33 4.17
5380 7696 7.180322 AGCATATCCACTAGATTATCCACAG 57.820 40.000 0.00 0.00 36.33 3.66
5416 7732 8.745464 TTTACGGCAATTGAAATAACTAAACC 57.255 30.769 10.34 0.00 0.00 3.27
5622 7938 4.898320 TGTCTTACTTGCATGATCACTGT 58.102 39.130 6.60 0.00 0.00 3.55
5625 7941 5.583854 GTCTTACTTGCATGATCACTGTGAT 59.416 40.000 22.45 22.45 40.34 3.06
5751 8067 2.076863 GACACTCATGTAACCACAGCC 58.923 52.381 0.00 0.00 39.95 4.85
5862 8178 3.191078 CTTCTGGAGCTTATCACTGGG 57.809 52.381 0.00 0.00 0.00 4.45
6118 8442 0.882042 AAGCTGACTGACACTTGGCG 60.882 55.000 0.00 0.00 0.00 5.69
6524 8855 2.441532 CTCTCCGGCCCGAGGTAA 60.442 66.667 19.35 1.53 0.00 2.85
6525 8856 2.757099 TCTCCGGCCCGAGGTAAC 60.757 66.667 19.35 0.00 0.00 2.50
6557 8888 7.994425 AAAAAGAACAAAACAAAATGGTCCT 57.006 28.000 0.00 0.00 33.68 3.85
6559 8890 4.932146 AGAACAAAACAAAATGGTCCTCG 58.068 39.130 0.00 0.00 33.68 4.63
6590 8923 3.347411 GGCTAGTAGTGCCTCGTTG 57.653 57.895 0.00 0.00 46.38 4.10
6746 9079 3.543680 GTGGCTAATGCTACTCCTGAA 57.456 47.619 0.00 0.00 45.51 3.02
6747 9080 4.078639 GTGGCTAATGCTACTCCTGAAT 57.921 45.455 0.00 0.00 45.51 2.57
6748 9081 4.061596 GTGGCTAATGCTACTCCTGAATC 58.938 47.826 0.00 0.00 45.51 2.52
6749 9082 3.071602 TGGCTAATGCTACTCCTGAATCC 59.928 47.826 0.00 0.00 39.59 3.01
6750 9083 3.326297 GGCTAATGCTACTCCTGAATCCT 59.674 47.826 0.00 0.00 39.59 3.24
6751 9084 4.314121 GCTAATGCTACTCCTGAATCCTG 58.686 47.826 0.00 0.00 36.03 3.86
6752 9085 4.039730 GCTAATGCTACTCCTGAATCCTGA 59.960 45.833 0.00 0.00 36.03 3.86
6753 9086 5.279910 GCTAATGCTACTCCTGAATCCTGAT 60.280 44.000 0.00 0.00 36.03 2.90
6754 9087 4.620589 ATGCTACTCCTGAATCCTGATG 57.379 45.455 0.00 0.00 0.00 3.07
6755 9088 3.378512 TGCTACTCCTGAATCCTGATGT 58.621 45.455 0.00 0.00 0.00 3.06
6756 9089 4.546674 TGCTACTCCTGAATCCTGATGTA 58.453 43.478 0.00 0.00 0.00 2.29
6757 9090 5.150715 TGCTACTCCTGAATCCTGATGTAT 58.849 41.667 0.00 0.00 0.00 2.29
6758 9091 5.604231 TGCTACTCCTGAATCCTGATGTATT 59.396 40.000 0.00 0.00 0.00 1.89
6759 9092 5.931146 GCTACTCCTGAATCCTGATGTATTG 59.069 44.000 0.00 0.00 0.00 1.90
6760 9093 5.965033 ACTCCTGAATCCTGATGTATTGT 57.035 39.130 0.00 0.00 0.00 2.71
6761 9094 7.255977 GCTACTCCTGAATCCTGATGTATTGTA 60.256 40.741 0.00 0.00 0.00 2.41
6762 9095 6.821388 ACTCCTGAATCCTGATGTATTGTAC 58.179 40.000 0.00 0.00 0.00 2.90
6763 9096 6.613271 ACTCCTGAATCCTGATGTATTGTACT 59.387 38.462 0.00 0.00 0.00 2.73
6764 9097 7.126421 ACTCCTGAATCCTGATGTATTGTACTT 59.874 37.037 0.00 0.00 0.00 2.24
6765 9098 7.275183 TCCTGAATCCTGATGTATTGTACTTG 58.725 38.462 0.00 0.00 0.00 3.16
6766 9099 7.050377 CCTGAATCCTGATGTATTGTACTTGT 58.950 38.462 0.00 0.00 0.00 3.16
6767 9100 8.204160 CCTGAATCCTGATGTATTGTACTTGTA 58.796 37.037 0.00 0.00 0.00 2.41
6768 9101 8.942338 TGAATCCTGATGTATTGTACTTGTAC 57.058 34.615 4.14 4.14 0.00 2.90
6769 9102 7.704899 TGAATCCTGATGTATTGTACTTGTACG 59.295 37.037 6.46 0.00 0.00 3.67
6770 9103 6.762702 TCCTGATGTATTGTACTTGTACGA 57.237 37.500 3.63 3.63 0.00 3.43
6771 9104 7.160547 TCCTGATGTATTGTACTTGTACGAA 57.839 36.000 5.12 2.72 0.00 3.85
6772 9105 7.778083 TCCTGATGTATTGTACTTGTACGAAT 58.222 34.615 5.12 8.56 0.00 3.34
6773 9106 7.919091 TCCTGATGTATTGTACTTGTACGAATC 59.081 37.037 5.12 5.16 0.00 2.52
6774 9107 7.169308 CCTGATGTATTGTACTTGTACGAATCC 59.831 40.741 5.12 0.58 0.00 3.01
6831 9165 2.614057 CCGTGCTAAGGCTAAATCCTTG 59.386 50.000 5.38 0.00 45.51 3.61
6832 9166 3.270877 CGTGCTAAGGCTAAATCCTTGT 58.729 45.455 5.38 0.00 45.51 3.16
6862 9196 8.530269 TTAGTAGTAGTAAAGCAAAACTCTGC 57.470 34.615 0.00 0.00 42.97 4.26
6863 9197 5.932883 AGTAGTAGTAAAGCAAAACTCTGCC 59.067 40.000 0.00 0.00 43.73 4.85
6864 9198 3.746492 AGTAGTAAAGCAAAACTCTGCCG 59.254 43.478 0.00 0.00 43.73 5.69
6865 9199 2.846193 AGTAAAGCAAAACTCTGCCGA 58.154 42.857 0.00 0.00 43.73 5.54
6866 9200 2.808543 AGTAAAGCAAAACTCTGCCGAG 59.191 45.455 3.27 3.27 43.73 4.63
6867 9201 0.312102 AAAGCAAAACTCTGCCGAGC 59.688 50.000 4.89 0.00 43.73 5.03
6868 9202 0.536006 AAGCAAAACTCTGCCGAGCT 60.536 50.000 4.89 0.00 43.73 4.09
6869 9203 0.321671 AGCAAAACTCTGCCGAGCTA 59.678 50.000 4.89 0.00 43.73 3.32
6870 9204 0.444260 GCAAAACTCTGCCGAGCTAC 59.556 55.000 4.89 0.00 41.09 3.58
6871 9205 1.079503 CAAAACTCTGCCGAGCTACC 58.920 55.000 4.89 0.00 41.09 3.18
6872 9206 0.389948 AAAACTCTGCCGAGCTACCG 60.390 55.000 4.89 0.00 41.09 4.02
6879 9213 2.981909 CCGAGCTACCGGCCGATA 60.982 66.667 30.73 14.83 43.25 2.92
6880 9214 2.561885 CGAGCTACCGGCCGATAG 59.438 66.667 30.73 26.68 43.05 2.08
6881 9215 2.258897 GAGCTACCGGCCGATAGC 59.741 66.667 39.40 39.40 43.49 2.97
6883 9217 3.677527 GCTACCGGCCGATAGCTA 58.322 61.111 38.95 13.91 40.59 3.32
6884 9218 2.190756 GCTACCGGCCGATAGCTAT 58.809 57.895 38.95 5.76 40.59 2.97
6885 9219 0.531200 GCTACCGGCCGATAGCTATT 59.469 55.000 38.95 10.43 40.59 1.73
6886 9220 1.469423 GCTACCGGCCGATAGCTATTC 60.469 57.143 38.95 14.47 40.59 1.75
6887 9221 2.093106 CTACCGGCCGATAGCTATTCT 58.907 52.381 30.73 0.00 43.05 2.40
6888 9222 2.211250 ACCGGCCGATAGCTATTCTA 57.789 50.000 30.73 0.00 43.05 2.10
6889 9223 2.736347 ACCGGCCGATAGCTATTCTAT 58.264 47.619 30.73 0.00 43.05 1.98
6890 9224 2.688958 ACCGGCCGATAGCTATTCTATC 59.311 50.000 30.73 0.00 46.53 2.08
6927 9261 5.287274 GTGATCAGTCATCGTCTACTTGTTG 59.713 44.000 0.00 0.00 36.60 3.33
6944 9284 7.872113 ACTTGTTGTCTTCAAAAGAAGAGAT 57.128 32.000 8.09 0.00 41.31 2.75
6946 9286 8.401709 ACTTGTTGTCTTCAAAAGAAGAGATTC 58.598 33.333 8.09 5.15 41.31 2.52
6956 9296 5.896922 AAAGAAGAGATTCATATGTCGCG 57.103 39.130 0.00 0.00 0.00 5.87
6995 9338 3.382048 ACTTACAACACTCGAGGAACC 57.618 47.619 18.41 0.00 0.00 3.62
6996 9339 2.963782 ACTTACAACACTCGAGGAACCT 59.036 45.455 18.41 0.00 0.00 3.50
7044 9387 5.005971 CACCAAACAAGAGCAAAATCACAAG 59.994 40.000 0.00 0.00 0.00 3.16
7294 9655 1.215647 GAGCGTCGTCATCCCTTGT 59.784 57.895 0.00 0.00 0.00 3.16
7305 9666 0.423544 ATCCCTTGTTCCTCCTCCCT 59.576 55.000 0.00 0.00 0.00 4.20
7311 9672 1.383386 GTTCCTCCTCCCTCTCCCC 60.383 68.421 0.00 0.00 0.00 4.81
7347 9708 1.264749 TTCTCCTGATGGGACGGTGG 61.265 60.000 0.00 0.00 39.58 4.61
7371 9732 4.477975 CTGCCCTCCGTCGTCGTC 62.478 72.222 0.71 0.00 35.01 4.20
7493 9854 3.823330 GCCATGTCAGCTGCTGGC 61.823 66.667 27.69 27.69 46.54 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 132 4.426112 TGCTCGAGACGGCAGCAG 62.426 66.667 18.75 0.00 38.25 4.24
367 421 3.682292 GAGCGGGGCAGGGTAAGTG 62.682 68.421 0.00 0.00 0.00 3.16
444 498 6.411630 TTCACGAATAAATAACTGAACCCG 57.588 37.500 0.00 0.00 0.00 5.28
480 534 2.890371 GTACGCCCGTCACCAGAT 59.110 61.111 0.00 0.00 0.00 2.90
629 2843 4.097361 GTCGGTGAAGGGGAGCCC 62.097 72.222 0.00 0.00 45.90 5.19
635 2849 4.003788 ACGCAGGTCGGTGAAGGG 62.004 66.667 0.00 0.00 43.86 3.95
676 2890 0.740868 CCACCTCGCGTCATTGTCAT 60.741 55.000 5.77 0.00 0.00 3.06
682 2896 4.457496 CTGCCCACCTCGCGTCAT 62.457 66.667 5.77 0.00 0.00 3.06
1116 3342 8.547894 AGCCAAATAACGAAAAATTGAGAAAAC 58.452 29.630 0.00 0.00 0.00 2.43
1246 3472 1.135402 CATGGGCGGAAACTTGCTAAC 60.135 52.381 0.00 0.00 0.00 2.34
1306 3535 3.270877 GAAAGCTGGAAAGCGGAGATTA 58.729 45.455 0.00 0.00 31.23 1.75
1314 3543 3.881937 AATCCATGAAAGCTGGAAAGC 57.118 42.857 0.00 0.00 45.57 3.51
1346 3575 6.707608 GCACAATATGAGAGACATGGTGATAA 59.292 38.462 0.00 0.00 39.77 1.75
1402 3631 3.459598 AGGCCAAAGTTATCAGCCATAGA 59.540 43.478 5.01 0.00 46.35 1.98
1422 3652 5.649782 ATCTTTGTGAATTTGCCAGTAGG 57.350 39.130 0.00 0.00 38.23 3.18
1440 3670 5.819901 GCACAGTGGAAGCTAATTCTATCTT 59.180 40.000 1.84 0.00 38.07 2.40
1492 3738 7.669089 ACTTCAGAAGGGGAAATTGTTTTTA 57.331 32.000 14.90 0.00 0.00 1.52
1500 3746 3.344515 GCGTTACTTCAGAAGGGGAAAT 58.655 45.455 14.90 0.00 0.00 2.17
1563 3809 3.912496 TGTAGAGCCATAACATGCACT 57.088 42.857 0.00 0.00 33.04 4.40
1643 3889 8.791355 ATTATGTTTACGAAAGGTTCAAACAC 57.209 30.769 8.11 0.00 40.67 3.32
1663 3909 8.498054 TCTAAGTGAAGAAAGGCAAGATTATG 57.502 34.615 0.00 0.00 0.00 1.90
1678 3924 8.388484 CCAAAGATATGGGAATCTAAGTGAAG 57.612 38.462 0.00 0.00 35.10 3.02
1770 4016 9.911788 AGACAGAATGATATCACTATTTTGGTT 57.088 29.630 7.78 0.00 39.69 3.67
1824 4070 3.891049 AGGAGCCAGGCATTACTAAAAG 58.109 45.455 15.80 0.00 0.00 2.27
2027 4273 3.615709 GCGCACTGCCCCCTTTTT 61.616 61.111 0.30 0.00 37.76 1.94
2136 4382 7.928307 AAGTACAGATAAATGTGTGAATGCT 57.072 32.000 3.18 0.00 34.91 3.79
2234 4480 4.394920 CAGTTACTTCGCCACCACATTATT 59.605 41.667 0.00 0.00 0.00 1.40
2353 4599 3.266772 AGAGCATCACCTACCAATGGAAA 59.733 43.478 6.16 0.00 37.82 3.13
2547 4794 3.059597 GTCGACACACAAAAGATCACCTG 60.060 47.826 11.55 0.00 0.00 4.00
2778 5025 3.005791 GCTATGTTCTGCAAACCCAAGTT 59.994 43.478 8.60 0.00 38.03 2.66
2883 5130 4.383850 ACTCAGCACAGCTATGTTCTAG 57.616 45.455 0.00 0.00 37.65 2.43
2884 5131 4.950475 AGTACTCAGCACAGCTATGTTCTA 59.050 41.667 0.00 0.00 37.65 2.10
2937 5184 6.863126 AGATTTTATTGAAAACCGAAGCAGTG 59.137 34.615 0.00 0.00 37.37 3.66
3046 5294 4.753610 TCTCAGCAGAAATCTCACAAACAG 59.246 41.667 0.00 0.00 0.00 3.16
3091 5339 6.272822 AGGCACAGAAATAATGAGAAAACC 57.727 37.500 0.00 0.00 0.00 3.27
3410 5658 1.754226 GAACCAGAAAAACAGGGCACA 59.246 47.619 0.00 0.00 0.00 4.57
3414 5662 2.623416 GGTCTGAACCAGAAAAACAGGG 59.377 50.000 0.00 0.00 45.68 4.45
3558 5806 5.489792 TGCAAATCTAAGAGGACTTCTGT 57.510 39.130 0.00 0.00 35.91 3.41
3672 5921 4.335594 AGCCACAAGAAAAGAACTACACAC 59.664 41.667 0.00 0.00 0.00 3.82
3728 5977 4.576463 ACAAGCAGGGCTAGAAAATAATCG 59.424 41.667 0.00 0.00 38.25 3.34
3945 6194 6.687081 TGTACTGGTTTGAAGGTTTGTTAG 57.313 37.500 0.00 0.00 0.00 2.34
4212 6468 2.378208 TGTTGGAGGATTGAATGGTGGA 59.622 45.455 0.00 0.00 0.00 4.02
4215 6471 2.109834 TGGTGTTGGAGGATTGAATGGT 59.890 45.455 0.00 0.00 0.00 3.55
4252 6508 9.423061 GCCACAGAATCATAGTTAACAAAATTT 57.577 29.630 8.61 0.00 0.00 1.82
4339 6595 5.973899 TCCAGCAAGCACATGTTAAATAA 57.026 34.783 0.00 0.00 0.00 1.40
4593 6885 1.836166 CTGGATCCTCCTCAGCTGAAA 59.164 52.381 18.85 8.06 37.46 2.69
4738 7030 3.560636 ACTGCTACCAATGTACCATCC 57.439 47.619 0.00 0.00 0.00 3.51
4816 7108 4.273235 TGCACTGCCATACTAATCATTTCG 59.727 41.667 0.00 0.00 0.00 3.46
4915 7207 2.695055 CGTGATGCAACGCTACCG 59.305 61.111 5.95 0.00 36.65 4.02
4999 7291 6.829811 AGAGATAACTAGGTCTACAGTTGGTC 59.170 42.308 0.00 0.00 35.79 4.02
5061 7353 2.293399 GTCCCGACTTGATTTTGCTTGT 59.707 45.455 0.00 0.00 0.00 3.16
5090 7382 6.840780 AAAGTTGAGCTTTGGCAGTATTAT 57.159 33.333 0.00 0.00 45.00 1.28
5099 7391 8.696410 TTAAACAGTTTAAAGTTGAGCTTTGG 57.304 30.769 14.94 0.00 46.07 3.28
5126 7418 4.913924 GTGTCAAAGTGATGCAGATGAAAC 59.086 41.667 0.00 0.00 0.00 2.78
5127 7419 4.579753 TGTGTCAAAGTGATGCAGATGAAA 59.420 37.500 0.00 0.00 0.00 2.69
5254 7548 4.505191 CAGTTGGATTTGCAAAAGTGAGTG 59.495 41.667 17.19 11.67 0.00 3.51
5285 7601 7.270047 TCGTCGGTTAAATTTTAGGATCAGAT 58.730 34.615 0.00 0.00 0.00 2.90
5323 7639 2.371841 TCACAGGTCATATGTATGGGGC 59.628 50.000 1.90 0.00 34.50 5.80
5331 7647 6.285990 TCTGATCACATTCACAGGTCATATG 58.714 40.000 0.00 0.00 0.00 1.78
5332 7648 6.490241 TCTGATCACATTCACAGGTCATAT 57.510 37.500 0.00 0.00 0.00 1.78
5335 7651 4.572909 CTTCTGATCACATTCACAGGTCA 58.427 43.478 0.00 0.00 0.00 4.02
5336 7652 3.373439 GCTTCTGATCACATTCACAGGTC 59.627 47.826 0.00 0.00 0.00 3.85
5358 7674 6.939622 TGCTGTGGATAATCTAGTGGATATG 58.060 40.000 0.00 0.00 33.71 1.78
5359 7675 7.559335 TTGCTGTGGATAATCTAGTGGATAT 57.441 36.000 0.00 0.00 33.71 1.63
5360 7676 6.994421 TTGCTGTGGATAATCTAGTGGATA 57.006 37.500 0.00 0.00 33.71 2.59
5361 7677 5.894298 TTGCTGTGGATAATCTAGTGGAT 57.106 39.130 0.00 0.00 35.97 3.41
5362 7678 5.894298 ATTGCTGTGGATAATCTAGTGGA 57.106 39.130 0.00 0.00 0.00 4.02
5363 7679 9.155975 GTTATATTGCTGTGGATAATCTAGTGG 57.844 37.037 0.00 0.00 0.00 4.00
5364 7680 9.935241 AGTTATATTGCTGTGGATAATCTAGTG 57.065 33.333 0.00 0.00 0.00 2.74
5371 7687 8.832521 CCGTAAAAGTTATATTGCTGTGGATAA 58.167 33.333 0.00 0.00 0.00 1.75
5372 7688 7.041644 GCCGTAAAAGTTATATTGCTGTGGATA 60.042 37.037 0.00 0.00 0.00 2.59
5373 7689 6.238648 GCCGTAAAAGTTATATTGCTGTGGAT 60.239 38.462 0.00 0.00 0.00 3.41
5374 7690 5.065474 GCCGTAAAAGTTATATTGCTGTGGA 59.935 40.000 0.00 0.00 0.00 4.02
5375 7691 5.163703 TGCCGTAAAAGTTATATTGCTGTGG 60.164 40.000 0.00 0.00 0.00 4.17
5376 7692 5.874831 TGCCGTAAAAGTTATATTGCTGTG 58.125 37.500 0.00 0.00 0.00 3.66
5377 7693 6.503589 TTGCCGTAAAAGTTATATTGCTGT 57.496 33.333 0.00 0.00 0.00 4.40
5378 7694 7.700234 TCAATTGCCGTAAAAGTTATATTGCTG 59.300 33.333 0.00 0.00 0.00 4.41
5379 7695 7.767261 TCAATTGCCGTAAAAGTTATATTGCT 58.233 30.769 0.00 0.00 0.00 3.91
5380 7696 7.979115 TCAATTGCCGTAAAAGTTATATTGC 57.021 32.000 0.00 0.00 0.00 3.56
5485 7801 5.858475 AGTCAAAACTGAAATCGCTAATCG 58.142 37.500 0.00 0.00 33.32 3.34
5625 7941 4.141642 ACATCACGATGAATGATCTTGGGA 60.142 41.667 13.83 0.00 41.20 4.37
5862 8178 1.522580 GAGGTCGAATGCCCTCTGC 60.523 63.158 11.55 0.00 43.29 4.26
6118 8442 0.620556 ACATCACACATGGGAGGGAC 59.379 55.000 0.00 0.00 32.80 4.46
6509 8840 2.652095 TTGTTACCTCGGGCCGGAG 61.652 63.158 28.76 28.76 0.00 4.63
6581 8914 3.611530 GCTAAAAATTCTGCAACGAGGCA 60.612 43.478 5.71 5.71 42.53 4.75
6590 8923 8.076178 TGTACAAAAGAGAGCTAAAAATTCTGC 58.924 33.333 0.00 0.00 0.00 4.26
6745 9078 7.778083 TCGTACAAGTACAATACATCAGGATT 58.222 34.615 10.63 0.00 35.87 3.01
6746 9079 7.342769 TCGTACAAGTACAATACATCAGGAT 57.657 36.000 10.63 0.00 35.87 3.24
6747 9080 6.762702 TCGTACAAGTACAATACATCAGGA 57.237 37.500 10.63 0.00 35.87 3.86
6748 9081 7.169308 GGATTCGTACAAGTACAATACATCAGG 59.831 40.741 10.63 0.00 35.87 3.86
6749 9082 7.921214 AGGATTCGTACAAGTACAATACATCAG 59.079 37.037 10.63 0.00 35.87 2.90
6750 9083 7.704899 CAGGATTCGTACAAGTACAATACATCA 59.295 37.037 10.63 0.00 35.87 3.07
6751 9084 7.919091 TCAGGATTCGTACAAGTACAATACATC 59.081 37.037 10.63 4.27 35.87 3.06
6752 9085 7.778083 TCAGGATTCGTACAAGTACAATACAT 58.222 34.615 10.63 0.00 35.87 2.29
6753 9086 7.160547 TCAGGATTCGTACAAGTACAATACA 57.839 36.000 10.63 0.00 35.87 2.29
6754 9087 7.705325 ACATCAGGATTCGTACAAGTACAATAC 59.295 37.037 10.63 9.35 35.87 1.89
6755 9088 7.778083 ACATCAGGATTCGTACAAGTACAATA 58.222 34.615 10.63 0.00 35.87 1.90
6756 9089 6.640518 ACATCAGGATTCGTACAAGTACAAT 58.359 36.000 10.63 8.75 35.87 2.71
6757 9090 6.032956 ACATCAGGATTCGTACAAGTACAA 57.967 37.500 10.63 4.90 35.87 2.41
6758 9091 5.654603 ACATCAGGATTCGTACAAGTACA 57.345 39.130 10.63 0.00 35.87 2.90
6759 9092 7.705325 ACAATACATCAGGATTCGTACAAGTAC 59.295 37.037 0.29 0.29 0.00 2.73
6760 9093 7.778083 ACAATACATCAGGATTCGTACAAGTA 58.222 34.615 0.00 0.00 0.00 2.24
6761 9094 6.640518 ACAATACATCAGGATTCGTACAAGT 58.359 36.000 0.00 0.00 0.00 3.16
6762 9095 7.921214 AGTACAATACATCAGGATTCGTACAAG 59.079 37.037 0.00 0.00 31.38 3.16
6763 9096 7.778083 AGTACAATACATCAGGATTCGTACAA 58.222 34.615 0.00 0.00 31.38 2.41
6764 9097 7.342769 AGTACAATACATCAGGATTCGTACA 57.657 36.000 0.00 0.00 31.38 2.90
6765 9098 7.705325 ACAAGTACAATACATCAGGATTCGTAC 59.295 37.037 0.00 0.00 0.00 3.67
6766 9099 7.778083 ACAAGTACAATACATCAGGATTCGTA 58.222 34.615 0.00 0.00 0.00 3.43
6767 9100 6.640518 ACAAGTACAATACATCAGGATTCGT 58.359 36.000 0.00 0.00 0.00 3.85
6768 9101 7.096599 CGTACAAGTACAATACATCAGGATTCG 60.097 40.741 10.63 0.00 35.87 3.34
6769 9102 7.705325 ACGTACAAGTACAATACATCAGGATTC 59.295 37.037 10.63 0.00 35.87 2.52
6770 9103 7.491372 CACGTACAAGTACAATACATCAGGATT 59.509 37.037 10.63 0.00 35.87 3.01
6771 9104 6.978659 CACGTACAAGTACAATACATCAGGAT 59.021 38.462 10.63 0.00 35.87 3.24
6772 9105 6.327154 CACGTACAAGTACAATACATCAGGA 58.673 40.000 10.63 0.00 35.87 3.86
6773 9106 5.005394 GCACGTACAAGTACAATACATCAGG 59.995 44.000 10.63 0.00 35.87 3.86
6774 9107 5.575218 TGCACGTACAAGTACAATACATCAG 59.425 40.000 10.63 0.00 35.87 2.90
6847 9181 1.535462 GCTCGGCAGAGTTTTGCTTTA 59.465 47.619 15.48 0.00 46.03 1.85
6851 9185 0.444260 GTAGCTCGGCAGAGTTTTGC 59.556 55.000 15.48 1.26 46.03 3.68
6852 9186 1.079503 GGTAGCTCGGCAGAGTTTTG 58.920 55.000 15.48 0.00 46.03 2.44
6853 9187 0.389948 CGGTAGCTCGGCAGAGTTTT 60.390 55.000 15.48 4.58 46.03 2.43
6854 9188 1.215647 CGGTAGCTCGGCAGAGTTT 59.784 57.895 15.48 6.95 46.03 2.66
6855 9189 2.711922 CCGGTAGCTCGGCAGAGTT 61.712 63.158 15.48 11.99 46.03 3.01
6856 9190 3.141488 CCGGTAGCTCGGCAGAGT 61.141 66.667 15.48 5.13 46.03 3.24
6863 9197 2.561885 CTATCGGCCGGTAGCTCG 59.438 66.667 31.22 10.34 43.05 5.03
6867 9201 2.093106 AGAATAGCTATCGGCCGGTAG 58.907 52.381 36.06 36.06 43.05 3.18
6868 9202 2.211250 AGAATAGCTATCGGCCGGTA 57.789 50.000 27.83 23.29 43.05 4.02
6869 9203 2.211250 TAGAATAGCTATCGGCCGGT 57.789 50.000 27.83 23.47 43.05 5.28
6870 9204 3.357166 GATAGAATAGCTATCGGCCGG 57.643 52.381 27.83 10.87 44.32 6.13
6886 9220 0.317603 CACGGGTTAGCGGTCGATAG 60.318 60.000 0.00 0.00 0.00 2.08
6887 9221 0.747644 TCACGGGTTAGCGGTCGATA 60.748 55.000 0.00 0.00 0.00 2.92
6888 9222 1.389609 ATCACGGGTTAGCGGTCGAT 61.390 55.000 0.00 0.00 0.00 3.59
6889 9223 1.996786 GATCACGGGTTAGCGGTCGA 61.997 60.000 0.00 0.00 0.00 4.20
6890 9224 1.588139 GATCACGGGTTAGCGGTCG 60.588 63.158 0.00 0.00 0.00 4.79
6891 9225 0.527817 CTGATCACGGGTTAGCGGTC 60.528 60.000 0.00 0.00 0.00 4.79
6892 9226 1.255667 ACTGATCACGGGTTAGCGGT 61.256 55.000 0.00 0.00 0.00 5.68
6944 9284 1.662517 AATGTGCCGCGACATATGAA 58.337 45.000 8.23 0.00 35.43 2.57
6946 9286 2.543848 AGTTAATGTGCCGCGACATATG 59.456 45.455 8.23 0.00 35.43 1.78
6995 9338 1.854743 CGTGATGCTTGTGGATCGTAG 59.145 52.381 0.00 0.00 42.88 3.51
6996 9339 1.921243 CGTGATGCTTGTGGATCGTA 58.079 50.000 0.00 0.00 42.88 3.43
7044 9387 5.290400 CACTACTTTTACCGTTTAGCTAGCC 59.710 44.000 12.13 0.00 0.00 3.93
7283 9644 1.210722 GGAGGAGGAACAAGGGATGAC 59.789 57.143 0.00 0.00 0.00 3.06
7294 9655 2.647949 GGGGGAGAGGGAGGAGGAA 61.648 68.421 0.00 0.00 0.00 3.36
7427 9788 2.933878 TATGCAGGTTTAGGCGCCCG 62.934 60.000 26.15 4.00 0.00 6.13
7428 9789 0.750182 TTATGCAGGTTTAGGCGCCC 60.750 55.000 26.15 7.48 0.00 6.13
7493 9854 2.094700 TGCGTAGGACTCTTGCTACTTG 60.095 50.000 2.44 0.00 42.92 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.