Multiple sequence alignment - TraesCS2D01G319700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G319700 chr2D 100.000 7713 0 0 1 7713 410425224 410417512 0.000000e+00 14244.0
1 TraesCS2D01G319700 chr2D 76.667 870 140 49 1898 2715 516323291 516322433 2.570000e-114 424.0
2 TraesCS2D01G319700 chr2D 92.000 50 3 1 2804 2852 570087585 570087536 1.390000e-07 69.4
3 TraesCS2D01G319700 chr2D 90.698 43 4 0 2810 2852 554306600 554306642 3.010000e-04 58.4
4 TraesCS2D01G319700 chr2A 93.593 5213 204 51 2109 7244 578603097 578608256 0.000000e+00 7657.0
5 TraesCS2D01G319700 chr2A 91.309 1933 132 17 210 2116 578601147 578603069 0.000000e+00 2606.0
6 TraesCS2D01G319700 chr2A 93.195 338 22 1 7018 7354 325798746 325798409 5.380000e-136 496.0
7 TraesCS2D01G319700 chr2A 88.221 399 29 9 7236 7617 578609875 578610272 1.960000e-125 460.0
8 TraesCS2D01G319700 chr2A 76.812 690 128 27 1898 2561 659888781 659888098 7.360000e-95 359.0
9 TraesCS2D01G319700 chr2A 90.598 234 20 2 1 232 578578660 578578893 7.520000e-80 309.0
10 TraesCS2D01G319700 chr2A 87.111 225 25 4 436 658 88988695 88988473 1.280000e-62 252.0
11 TraesCS2D01G319700 chr2B 95.779 2677 84 13 4791 7459 485042198 485039543 0.000000e+00 4290.0
12 TraesCS2D01G319700 chr2B 94.545 2255 89 13 2574 4804 485044492 485042248 0.000000e+00 3452.0
13 TraesCS2D01G319700 chr2B 93.704 1366 49 11 771 2116 485046273 485044925 0.000000e+00 2012.0
14 TraesCS2D01G319700 chr2B 93.052 403 28 0 2109 2511 485044897 485044495 2.400000e-164 590.0
15 TraesCS2D01G319700 chr2B 76.156 692 135 21 1898 2572 607534326 607533648 3.450000e-88 337.0
16 TraesCS2D01G319700 chr2B 95.238 126 6 0 7490 7615 485039543 485039418 4.720000e-47 200.0
17 TraesCS2D01G319700 chr2B 95.122 41 2 0 2812 2852 682571466 682571426 1.800000e-06 65.8
18 TraesCS2D01G319700 chr3D 84.989 453 59 6 2126 2572 591356994 591357443 1.180000e-122 451.0
19 TraesCS2D01G319700 chr3D 82.623 305 30 13 436 721 527520535 527520235 1.660000e-61 248.0
20 TraesCS2D01G319700 chr7B 79.328 595 83 15 2122 2703 226580828 226580261 1.570000e-101 381.0
21 TraesCS2D01G319700 chr7B 81.597 288 42 10 436 716 634277376 634277093 2.170000e-55 228.0
22 TraesCS2D01G319700 chr3B 86.441 236 25 6 430 661 680975224 680975456 1.280000e-62 252.0
23 TraesCS2D01G319700 chr3B 75.455 550 92 29 2174 2703 640663883 640663357 2.170000e-55 228.0
24 TraesCS2D01G319700 chr3B 77.922 308 47 13 427 716 758368042 758368346 1.030000e-38 172.0
25 TraesCS2D01G319700 chr5B 82.770 296 35 12 430 719 510816252 510816537 4.620000e-62 250.0
26 TraesCS2D01G319700 chr7D 86.017 236 26 6 430 661 548022388 548022620 5.980000e-61 246.0
27 TraesCS2D01G319700 chr5A 86.017 236 26 6 430 661 524008381 524008613 5.980000e-61 246.0
28 TraesCS2D01G319700 chr4A 85.957 235 26 6 430 660 714825917 714826148 2.150000e-60 244.0
29 TraesCS2D01G319700 chr4A 85.043 234 30 4 430 660 5831960 5832191 4.650000e-57 233.0
30 TraesCS2D01G319700 chr4A 84.932 146 20 2 1018 1161 164636257 164636112 6.240000e-31 147.0
31 TraesCS2D01G319700 chr3A 85.185 243 26 8 423 661 589179554 589179790 2.780000e-59 241.0
32 TraesCS2D01G319700 chr3A 93.137 102 5 1 7614 7713 377797919 377797818 1.730000e-31 148.0
33 TraesCS2D01G319700 chr3A 75.817 306 38 20 430 716 723345878 723346166 1.050000e-23 122.0
34 TraesCS2D01G319700 chr3A 72.532 466 93 25 2370 2806 479687706 479687247 1.360000e-22 119.0
35 TraesCS2D01G319700 chrUn 79.100 311 36 16 430 716 23379345 23379650 3.670000e-43 187.0
36 TraesCS2D01G319700 chrUn 78.457 311 38 16 430 716 23375941 23376246 7.950000e-40 176.0
37 TraesCS2D01G319700 chr6A 74.834 453 92 14 2370 2806 594277334 594276888 1.320000e-42 185.0
38 TraesCS2D01G319700 chr6A 83.929 56 9 0 661 716 610413370 610413425 4.000000e-03 54.7
39 TraesCS2D01G319700 chr4D 84.932 146 20 2 1018 1161 310099492 310099637 6.240000e-31 147.0
40 TraesCS2D01G319700 chr7A 93.000 100 5 1 7616 7713 538162450 538162549 2.240000e-30 145.0
41 TraesCS2D01G319700 chr7A 72.996 237 48 9 2575 2804 182842963 182842736 1.390000e-07 69.4
42 TraesCS2D01G319700 chr4B 83.562 146 22 2 1018 1161 387500403 387500548 1.350000e-27 135.0
43 TraesCS2D01G319700 chr1A 90.196 102 8 1 7614 7713 48990104 48990003 1.750000e-26 132.0
44 TraesCS2D01G319700 chr1A 86.458 96 11 1 7620 7713 435410201 435410106 3.810000e-18 104.0
45 TraesCS2D01G319700 chr6B 72.235 443 83 22 2396 2803 720063608 720064045 4.930000e-17 100.0
46 TraesCS2D01G319700 chr6B 77.019 161 37 0 2396 2556 720127503 720127663 8.240000e-15 93.5
47 TraesCS2D01G319700 chr6B 100.000 43 0 0 1898 1940 6200112 6200070 6.420000e-11 80.5
48 TraesCS2D01G319700 chr5D 86.275 51 7 0 1900 1950 435955224 435955174 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G319700 chr2D 410417512 410425224 7712 True 14244.000000 14244 100.0000 1 7713 1 chr2D.!!$R1 7712
1 TraesCS2D01G319700 chr2D 516322433 516323291 858 True 424.000000 424 76.6670 1898 2715 1 chr2D.!!$R2 817
2 TraesCS2D01G319700 chr2A 578601147 578610272 9125 False 3574.333333 7657 91.0410 210 7617 3 chr2A.!!$F2 7407
3 TraesCS2D01G319700 chr2A 659888098 659888781 683 True 359.000000 359 76.8120 1898 2561 1 chr2A.!!$R3 663
4 TraesCS2D01G319700 chr2B 485039418 485046273 6855 True 2108.800000 4290 94.4636 771 7615 5 chr2B.!!$R3 6844
5 TraesCS2D01G319700 chr2B 607533648 607534326 678 True 337.000000 337 76.1560 1898 2572 1 chr2B.!!$R1 674
6 TraesCS2D01G319700 chr7B 226580261 226580828 567 True 381.000000 381 79.3280 2122 2703 1 chr7B.!!$R1 581
7 TraesCS2D01G319700 chr3B 640663357 640663883 526 True 228.000000 228 75.4550 2174 2703 1 chr3B.!!$R1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.109723 TGAGCTGGCCGGTTTTAAGT 59.890 50.000 14.55 0.00 0.00 2.24 F
513 516 0.246635 ACACACGCACACCCTATCTC 59.753 55.000 0.00 0.00 0.00 2.75 F
721 724 0.391661 ACAGATTGATTCGCCACGCT 60.392 50.000 0.00 0.00 0.00 5.07 F
2275 2357 0.738975 ATCATCGTCGTCGTCCATGT 59.261 50.000 1.33 0.00 38.33 3.21 F
3627 3764 2.174685 TCTATCTGGCTGCCAGGTTA 57.825 50.000 39.88 30.12 43.31 2.85 F
4229 4369 3.701205 TCTCTTGGACTTGCAGCAATA 57.299 42.857 8.67 0.00 0.00 1.90 F
4477 4621 3.766545 ACATCAGGGTTATGCACAAGTT 58.233 40.909 0.00 0.00 0.00 2.66 F
5900 6125 1.967319 TGTGACTTTCTCCCTTGTGC 58.033 50.000 0.00 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2136 0.861837 GCGAACTATGCCCGAATCTG 59.138 55.000 0.00 0.00 0.00 2.90 R
2172 2245 0.819666 GCCCGAAATGGTGATCTCCC 60.820 60.000 11.24 3.34 35.15 4.30 R
2514 2606 1.978080 TTCCGTCCCCGTCGATTCA 60.978 57.895 0.00 0.00 0.00 2.57 R
4206 4346 0.520847 GCTGCAAGTCCAAGAGAAGC 59.479 55.000 0.00 0.00 35.30 3.86 R
4679 4823 2.277969 CACTCTCAAGCAGCATCGATT 58.722 47.619 0.00 0.00 0.00 3.34 R
5665 5890 1.113788 AGTTGAGCTGGCTTTGCAAA 58.886 45.000 12.14 12.14 0.00 3.68 R
5995 6220 1.204941 GACCACTATCGCCACTTCTGT 59.795 52.381 0.00 0.00 0.00 3.41 R
7661 9550 0.032267 GAGCGCATGTAGGTACTCCC 59.968 60.000 11.47 0.00 41.75 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 6.988109 ACGTTTAAGACATATCATAGACGC 57.012 37.500 0.00 0.00 39.12 5.19
88 89 6.500910 ACGTTTAAGACATATCATAGACGCA 58.499 36.000 0.00 0.00 39.12 5.24
89 90 6.417044 ACGTTTAAGACATATCATAGACGCAC 59.583 38.462 0.00 0.00 39.12 5.34
90 91 6.397584 CGTTTAAGACATATCATAGACGCACG 60.398 42.308 0.00 0.00 32.29 5.34
91 92 4.569761 AAGACATATCATAGACGCACGT 57.430 40.909 0.00 0.00 0.00 4.49
92 93 5.684550 AAGACATATCATAGACGCACGTA 57.315 39.130 0.00 0.00 0.00 3.57
93 94 5.032100 AGACATATCATAGACGCACGTAC 57.968 43.478 0.00 0.00 0.00 3.67
94 95 4.514066 AGACATATCATAGACGCACGTACA 59.486 41.667 0.00 0.00 0.00 2.90
95 96 5.008316 AGACATATCATAGACGCACGTACAA 59.992 40.000 0.00 0.00 0.00 2.41
96 97 5.769367 ACATATCATAGACGCACGTACAAT 58.231 37.500 0.00 0.00 0.00 2.71
97 98 5.856986 ACATATCATAGACGCACGTACAATC 59.143 40.000 0.00 0.00 0.00 2.67
98 99 3.768468 TCATAGACGCACGTACAATCA 57.232 42.857 0.00 0.00 0.00 2.57
99 100 3.431856 TCATAGACGCACGTACAATCAC 58.568 45.455 0.00 0.00 0.00 3.06
100 101 2.267188 TAGACGCACGTACAATCACC 57.733 50.000 0.00 0.00 0.00 4.02
101 102 0.389426 AGACGCACGTACAATCACCC 60.389 55.000 0.00 0.00 0.00 4.61
102 103 1.356527 GACGCACGTACAATCACCCC 61.357 60.000 0.00 0.00 0.00 4.95
103 104 1.079405 CGCACGTACAATCACCCCT 60.079 57.895 0.00 0.00 0.00 4.79
104 105 0.173935 CGCACGTACAATCACCCCTA 59.826 55.000 0.00 0.00 0.00 3.53
105 106 1.202486 CGCACGTACAATCACCCCTAT 60.202 52.381 0.00 0.00 0.00 2.57
106 107 2.210116 GCACGTACAATCACCCCTATG 58.790 52.381 0.00 0.00 0.00 2.23
107 108 2.833794 CACGTACAATCACCCCTATGG 58.166 52.381 0.00 0.00 41.37 2.74
108 109 2.432874 CACGTACAATCACCCCTATGGA 59.567 50.000 0.00 0.00 38.00 3.41
109 110 3.071023 CACGTACAATCACCCCTATGGAT 59.929 47.826 0.00 0.00 38.00 3.41
110 111 3.071023 ACGTACAATCACCCCTATGGATG 59.929 47.826 0.00 0.00 38.00 3.51
111 112 2.664402 ACAATCACCCCTATGGATGC 57.336 50.000 0.00 0.00 38.00 3.91
112 113 1.852309 ACAATCACCCCTATGGATGCA 59.148 47.619 0.00 0.00 38.00 3.96
113 114 2.448194 ACAATCACCCCTATGGATGCAT 59.552 45.455 4.68 4.68 38.00 3.96
114 115 2.823747 CAATCACCCCTATGGATGCATG 59.176 50.000 10.37 0.01 38.00 4.06
115 116 1.521764 TCACCCCTATGGATGCATGT 58.478 50.000 10.37 0.00 38.00 3.21
116 117 2.700354 TCACCCCTATGGATGCATGTA 58.300 47.619 10.37 0.00 38.00 2.29
117 118 2.371841 TCACCCCTATGGATGCATGTAC 59.628 50.000 10.37 0.00 38.00 2.90
118 119 2.106338 CACCCCTATGGATGCATGTACA 59.894 50.000 10.37 0.00 38.00 2.90
119 120 2.106511 ACCCCTATGGATGCATGTACAC 59.893 50.000 10.37 0.00 38.00 2.90
120 121 2.106338 CCCCTATGGATGCATGTACACA 59.894 50.000 10.37 0.00 35.39 3.72
121 122 3.141398 CCCTATGGATGCATGTACACAC 58.859 50.000 10.37 0.00 0.00 3.82
122 123 3.433456 CCCTATGGATGCATGTACACACA 60.433 47.826 10.37 0.00 39.52 3.72
123 124 4.392047 CCTATGGATGCATGTACACACAT 58.608 43.478 10.37 11.26 46.58 3.21
124 125 4.823442 CCTATGGATGCATGTACACACATT 59.177 41.667 10.37 2.17 42.98 2.71
125 126 4.906065 ATGGATGCATGTACACACATTC 57.094 40.909 2.46 11.25 42.98 2.67
126 127 3.954200 TGGATGCATGTACACACATTCT 58.046 40.909 2.46 0.00 42.98 2.40
127 128 5.096443 TGGATGCATGTACACACATTCTA 57.904 39.130 2.46 5.92 42.98 2.10
128 129 5.683681 TGGATGCATGTACACACATTCTAT 58.316 37.500 2.46 0.00 42.98 1.98
129 130 5.759763 TGGATGCATGTACACACATTCTATC 59.240 40.000 2.46 4.99 42.98 2.08
130 131 5.180117 GGATGCATGTACACACATTCTATCC 59.820 44.000 2.46 7.16 42.98 2.59
131 132 5.096443 TGCATGTACACACATTCTATCCA 57.904 39.130 0.00 0.00 42.98 3.41
132 133 5.683681 TGCATGTACACACATTCTATCCAT 58.316 37.500 0.00 0.00 42.98 3.41
133 134 5.528320 TGCATGTACACACATTCTATCCATG 59.472 40.000 0.00 0.00 42.98 3.66
134 135 5.528690 GCATGTACACACATTCTATCCATGT 59.471 40.000 0.00 0.00 42.98 3.21
138 139 2.675767 CACATTCTATCCATGTGCGC 57.324 50.000 0.00 0.00 43.78 6.09
139 140 1.941975 CACATTCTATCCATGTGCGCA 59.058 47.619 5.66 5.66 43.78 6.09
140 141 1.942657 ACATTCTATCCATGTGCGCAC 59.057 47.619 33.11 33.11 33.42 5.34
141 142 1.265095 CATTCTATCCATGTGCGCACC 59.735 52.381 35.72 19.24 0.00 5.01
142 143 0.541392 TTCTATCCATGTGCGCACCT 59.459 50.000 35.72 25.10 0.00 4.00
143 144 0.541392 TCTATCCATGTGCGCACCTT 59.459 50.000 35.72 21.57 0.00 3.50
144 145 0.940126 CTATCCATGTGCGCACCTTC 59.060 55.000 35.72 13.65 0.00 3.46
145 146 0.809636 TATCCATGTGCGCACCTTCG 60.810 55.000 35.72 20.86 0.00 3.79
146 147 2.520465 ATCCATGTGCGCACCTTCGA 62.520 55.000 35.72 24.71 0.00 3.71
147 148 2.476051 CATGTGCGCACCTTCGAC 59.524 61.111 35.72 11.64 0.00 4.20
148 149 2.030412 ATGTGCGCACCTTCGACA 59.970 55.556 35.72 17.36 0.00 4.35
149 150 2.029288 ATGTGCGCACCTTCGACAG 61.029 57.895 35.72 0.00 0.00 3.51
150 151 2.355837 GTGCGCACCTTCGACAGA 60.356 61.111 30.12 0.00 0.00 3.41
151 152 1.738099 GTGCGCACCTTCGACAGAT 60.738 57.895 30.12 0.00 0.00 2.90
152 153 1.005037 TGCGCACCTTCGACAGATT 60.005 52.632 5.66 0.00 0.00 2.40
153 154 1.291184 TGCGCACCTTCGACAGATTG 61.291 55.000 5.66 0.00 0.00 2.67
154 155 1.014044 GCGCACCTTCGACAGATTGA 61.014 55.000 0.30 0.00 0.00 2.57
155 156 0.994995 CGCACCTTCGACAGATTGAG 59.005 55.000 0.00 0.00 0.00 3.02
156 157 0.723981 GCACCTTCGACAGATTGAGC 59.276 55.000 0.00 0.00 0.00 4.26
157 158 1.674221 GCACCTTCGACAGATTGAGCT 60.674 52.381 0.00 0.00 0.00 4.09
158 159 1.998315 CACCTTCGACAGATTGAGCTG 59.002 52.381 0.00 0.00 41.63 4.24
159 160 1.066573 ACCTTCGACAGATTGAGCTGG 60.067 52.381 0.00 0.00 40.20 4.85
160 161 1.005340 CTTCGACAGATTGAGCTGGC 58.995 55.000 0.00 0.00 40.62 4.85
161 162 0.391661 TTCGACAGATTGAGCTGGCC 60.392 55.000 0.00 0.00 40.96 5.36
162 163 2.169789 CGACAGATTGAGCTGGCCG 61.170 63.158 0.00 0.78 40.96 6.13
163 164 1.817099 GACAGATTGAGCTGGCCGG 60.817 63.158 7.41 7.41 37.99 6.13
164 165 2.270205 CAGATTGAGCTGGCCGGT 59.730 61.111 14.55 6.18 32.26 5.28
165 166 1.377725 CAGATTGAGCTGGCCGGTT 60.378 57.895 14.55 7.16 32.26 4.44
166 167 0.962356 CAGATTGAGCTGGCCGGTTT 60.962 55.000 14.55 1.29 32.26 3.27
167 168 0.251341 AGATTGAGCTGGCCGGTTTT 60.251 50.000 14.55 0.00 0.00 2.43
168 169 1.004277 AGATTGAGCTGGCCGGTTTTA 59.996 47.619 14.55 0.00 0.00 1.52
169 170 1.816224 GATTGAGCTGGCCGGTTTTAA 59.184 47.619 14.55 7.45 0.00 1.52
170 171 1.243902 TTGAGCTGGCCGGTTTTAAG 58.756 50.000 14.55 0.00 0.00 1.85
171 172 0.109723 TGAGCTGGCCGGTTTTAAGT 59.890 50.000 14.55 0.00 0.00 2.24
172 173 1.244816 GAGCTGGCCGGTTTTAAGTT 58.755 50.000 14.55 0.00 0.00 2.66
173 174 1.611977 GAGCTGGCCGGTTTTAAGTTT 59.388 47.619 14.55 0.00 0.00 2.66
174 175 1.339929 AGCTGGCCGGTTTTAAGTTTG 59.660 47.619 14.55 0.00 0.00 2.93
175 176 1.067974 GCTGGCCGGTTTTAAGTTTGT 59.932 47.619 14.55 0.00 0.00 2.83
176 177 2.482316 GCTGGCCGGTTTTAAGTTTGTT 60.482 45.455 14.55 0.00 0.00 2.83
177 178 3.243468 GCTGGCCGGTTTTAAGTTTGTTA 60.243 43.478 14.55 0.00 0.00 2.41
178 179 4.737055 GCTGGCCGGTTTTAAGTTTGTTAA 60.737 41.667 14.55 0.00 0.00 2.01
179 180 5.334724 TGGCCGGTTTTAAGTTTGTTAAA 57.665 34.783 1.90 0.00 0.00 1.52
180 181 5.727434 TGGCCGGTTTTAAGTTTGTTAAAA 58.273 33.333 1.90 0.00 33.11 1.52
181 182 6.346896 TGGCCGGTTTTAAGTTTGTTAAAAT 58.653 32.000 1.90 0.00 36.59 1.82
182 183 6.822170 TGGCCGGTTTTAAGTTTGTTAAAATT 59.178 30.769 1.90 0.00 36.59 1.82
183 184 7.127042 GGCCGGTTTTAAGTTTGTTAAAATTG 58.873 34.615 1.90 3.15 36.59 2.32
184 185 6.629649 GCCGGTTTTAAGTTTGTTAAAATTGC 59.370 34.615 1.90 6.04 36.59 3.56
185 186 7.127042 CCGGTTTTAAGTTTGTTAAAATTGCC 58.873 34.615 0.00 3.29 36.59 4.52
186 187 7.201617 CCGGTTTTAAGTTTGTTAAAATTGCCA 60.202 33.333 0.00 0.00 36.59 4.92
187 188 7.636745 CGGTTTTAAGTTTGTTAAAATTGCCAC 59.363 33.333 6.09 0.00 36.59 5.01
188 189 8.451748 GGTTTTAAGTTTGTTAAAATTGCCACA 58.548 29.630 6.09 0.00 36.59 4.17
189 190 9.484326 GTTTTAAGTTTGTTAAAATTGCCACAG 57.516 29.630 6.09 0.00 36.59 3.66
190 191 9.436957 TTTTAAGTTTGTTAAAATTGCCACAGA 57.563 25.926 0.00 0.00 31.27 3.41
191 192 6.902224 AAGTTTGTTAAAATTGCCACAGAC 57.098 33.333 0.00 0.00 0.00 3.51
192 193 5.040635 AGTTTGTTAAAATTGCCACAGACG 58.959 37.500 0.00 0.00 31.30 4.18
193 194 3.006659 TGTTAAAATTGCCACAGACGC 57.993 42.857 0.00 0.00 0.00 5.19
194 195 2.287909 TGTTAAAATTGCCACAGACGCC 60.288 45.455 0.00 0.00 0.00 5.68
195 196 1.904287 TAAAATTGCCACAGACGCCT 58.096 45.000 0.00 0.00 0.00 5.52
196 197 0.598065 AAAATTGCCACAGACGCCTC 59.402 50.000 0.00 0.00 0.00 4.70
197 198 1.577328 AAATTGCCACAGACGCCTCG 61.577 55.000 0.00 0.00 0.00 4.63
198 199 2.731691 AATTGCCACAGACGCCTCGT 62.732 55.000 0.00 0.00 45.10 4.18
199 200 1.884075 ATTGCCACAGACGCCTCGTA 61.884 55.000 0.00 0.00 41.37 3.43
200 201 2.202623 GCCACAGACGCCTCGTAG 60.203 66.667 0.00 0.00 41.37 3.51
201 202 2.202623 CCACAGACGCCTCGTAGC 60.203 66.667 0.00 0.00 41.37 3.58
202 203 2.701780 CCACAGACGCCTCGTAGCT 61.702 63.158 0.00 0.00 41.37 3.32
203 204 1.515088 CACAGACGCCTCGTAGCTG 60.515 63.158 0.00 6.54 41.37 4.24
204 205 1.674651 ACAGACGCCTCGTAGCTGA 60.675 57.895 12.77 0.00 41.37 4.26
205 206 1.226435 CAGACGCCTCGTAGCTGAC 60.226 63.158 0.00 0.00 41.37 3.51
218 219 4.832590 GTAGCTGACGGACACACTATAT 57.167 45.455 0.00 0.00 0.00 0.86
219 220 5.184340 GTAGCTGACGGACACACTATATT 57.816 43.478 0.00 0.00 0.00 1.28
273 274 5.665916 AAATCTAGAAAAATGCCCACCTG 57.334 39.130 0.00 0.00 0.00 4.00
289 290 5.316987 CCCACCTGTCAAATCTAGAACTTT 58.683 41.667 0.00 0.00 0.00 2.66
295 296 6.072452 CCTGTCAAATCTAGAACTTTGAACCC 60.072 42.308 18.60 10.32 41.57 4.11
320 321 3.706594 TGGACCAGCTCCACTATAAGAAG 59.293 47.826 0.00 0.00 44.99 2.85
386 389 8.833231 TTTTAGTGAAAACATTGGTGAAAACA 57.167 26.923 0.00 0.00 29.38 2.83
395 398 8.785329 AAACATTGGTGAAAACAAAATACACT 57.215 26.923 0.00 0.00 0.00 3.55
396 399 8.419076 AACATTGGTGAAAACAAAATACACTC 57.581 30.769 0.00 0.00 0.00 3.51
397 400 6.695278 ACATTGGTGAAAACAAAATACACTCG 59.305 34.615 0.00 0.00 0.00 4.18
423 426 3.865446 AGTATAAACCACCACGCCTAAC 58.135 45.455 0.00 0.00 0.00 2.34
455 458 9.534565 TTCTTGAACATCAGTATAGATACAAGC 57.465 33.333 0.00 0.00 35.44 4.01
457 460 5.920840 TGAACATCAGTATAGATACAAGCGC 59.079 40.000 0.00 0.00 35.74 5.92
459 462 5.704888 ACATCAGTATAGATACAAGCGCTC 58.295 41.667 12.06 0.00 35.74 5.03
477 480 4.094590 GCGCTCATATATACTCGTACACCT 59.905 45.833 0.00 0.00 0.00 4.00
478 481 5.727239 GCGCTCATATATACTCGTACACCTC 60.727 48.000 0.00 0.00 0.00 3.85
489 492 2.240414 TCGTACACCTCCACCTCTATGA 59.760 50.000 0.00 0.00 0.00 2.15
491 494 3.181489 CGTACACCTCCACCTCTATGAAC 60.181 52.174 0.00 0.00 0.00 3.18
495 498 1.471676 CCTCCACCTCTATGAACGCAC 60.472 57.143 0.00 0.00 0.00 5.34
504 507 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
506 509 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
511 514 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
513 516 0.246635 ACACACGCACACCCTATCTC 59.753 55.000 0.00 0.00 0.00 2.75
516 519 2.362397 CACACGCACACCCTATCTCTAT 59.638 50.000 0.00 0.00 0.00 1.98
525 528 3.509575 CACCCTATCTCTATGAGCACCTC 59.490 52.174 0.00 0.00 0.00 3.85
527 530 2.752354 CCTATCTCTATGAGCACCTCCG 59.248 54.545 0.00 0.00 0.00 4.63
529 532 2.437085 TCTCTATGAGCACCTCCGAA 57.563 50.000 0.00 0.00 0.00 4.30
535 538 0.603569 TGAGCACCTCCGAAAGACTC 59.396 55.000 0.00 0.00 0.00 3.36
538 541 1.016653 GCACCTCCGAAAGACTCAGC 61.017 60.000 0.00 0.00 0.00 4.26
540 543 1.153745 CCTCCGAAAGACTCAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
541 544 1.595993 CCTCCGAAAGACTCAGCCGA 61.596 60.000 0.00 0.00 0.00 5.54
550 553 3.340814 AGACTCAGCCGACATTTCATT 57.659 42.857 0.00 0.00 0.00 2.57
562 565 7.542130 AGCCGACATTTCATTTTGAGATTTTAC 59.458 33.333 0.00 0.00 0.00 2.01
571 574 9.611284 TTCATTTTGAGATTTTACAAGTCATCG 57.389 29.630 0.00 0.00 0.00 3.84
578 581 3.581024 TTTACAAGTCATCGTAGGCGT 57.419 42.857 0.00 0.00 39.49 5.68
582 585 1.132453 CAAGTCATCGTAGGCGTCTCA 59.868 52.381 0.00 0.00 39.49 3.27
591 594 2.096980 CGTAGGCGTCTCATAGTTGACA 59.903 50.000 0.00 0.00 33.18 3.58
593 596 1.478510 AGGCGTCTCATAGTTGACAGG 59.521 52.381 0.00 0.00 33.18 4.00
597 600 3.172050 CGTCTCATAGTTGACAGGAACG 58.828 50.000 0.00 0.00 33.18 3.95
602 605 3.192844 TCATAGTTGACAGGAACGTCTCC 59.807 47.826 8.26 8.26 45.81 3.71
614 617 3.490399 GAACGTCTCCTTCTACTGAACG 58.510 50.000 0.00 0.00 0.00 3.95
617 620 1.199558 GTCTCCTTCTACTGAACGCGT 59.800 52.381 5.58 5.58 0.00 6.01
658 661 9.236691 TGAAATAAATTCAGAATAAATGCGAGC 57.763 29.630 0.00 0.00 43.08 5.03
663 666 2.938451 TCAGAATAAATGCGAGCACTGG 59.062 45.455 0.00 0.00 0.00 4.00
672 675 4.729918 GAGCACTGGTGGGCTGGG 62.730 72.222 0.00 0.00 41.22 4.45
708 711 3.333680 ACCTAACCATCCAACCACAGATT 59.666 43.478 0.00 0.00 0.00 2.40
710 713 3.524095 AACCATCCAACCACAGATTGA 57.476 42.857 0.00 0.00 0.00 2.57
713 716 4.019174 ACCATCCAACCACAGATTGATTC 58.981 43.478 0.00 0.00 0.00 2.52
721 724 0.391661 ACAGATTGATTCGCCACGCT 60.392 50.000 0.00 0.00 0.00 5.07
731 734 2.443887 TCGCCACGCTTAACTTTACT 57.556 45.000 0.00 0.00 0.00 2.24
732 735 2.758009 TCGCCACGCTTAACTTTACTT 58.242 42.857 0.00 0.00 0.00 2.24
737 740 5.333568 CGCCACGCTTAACTTTACTTAAACT 60.334 40.000 0.00 0.00 0.00 2.66
745 748 9.310971 GCTTAACTTTACTTAAACTCGCTAAAC 57.689 33.333 0.00 0.00 0.00 2.01
754 758 7.852516 ACTTAAACTCGCTAAACAAGAAGAAG 58.147 34.615 0.00 0.00 0.00 2.85
760 764 7.379750 ACTCGCTAAACAAGAAGAAGAAGTAT 58.620 34.615 0.00 0.00 0.00 2.12
761 765 8.521176 ACTCGCTAAACAAGAAGAAGAAGTATA 58.479 33.333 0.00 0.00 0.00 1.47
763 767 7.758528 TCGCTAAACAAGAAGAAGAAGTATACC 59.241 37.037 0.00 0.00 0.00 2.73
764 768 7.544566 CGCTAAACAAGAAGAAGAAGTATACCA 59.455 37.037 0.00 0.00 0.00 3.25
810 826 1.488393 GGAGAAATCCAGCCAGCTAGT 59.512 52.381 0.00 0.00 0.00 2.57
925 943 3.308705 GTCGTCCGTCCCCACCTT 61.309 66.667 0.00 0.00 0.00 3.50
1336 1354 8.995220 GTCTGTTTAGATAATTTGTGGTGTACA 58.005 33.333 0.00 0.00 34.58 2.90
1459 1477 3.084786 GTCTAGCTTGGCATGTTCCTTT 58.915 45.455 0.00 0.00 0.00 3.11
1625 1652 3.758554 GTGAAACCTTGTACAGCATGGAT 59.241 43.478 11.47 0.14 43.04 3.41
1671 1700 2.991250 CCTGGTTAATCAGGTGTGGAG 58.009 52.381 24.48 0.00 46.89 3.86
1763 1792 7.029563 GGAAGAACAGTTTTGCATACATAAGG 58.970 38.462 0.00 0.00 0.00 2.69
1812 1841 6.471146 AGAAATCAGCTTTTCTTCTGCTCTA 58.529 36.000 7.46 0.00 41.95 2.43
1813 1842 7.111466 AGAAATCAGCTTTTCTTCTGCTCTAT 58.889 34.615 7.46 0.00 41.95 1.98
1814 1843 8.263640 AGAAATCAGCTTTTCTTCTGCTCTATA 58.736 33.333 7.46 0.00 41.95 1.31
1886 1915 7.568349 ACTATCTTCATAATGGTCATGTGTGT 58.432 34.615 0.00 0.00 0.00 3.72
1950 1979 1.481056 GGCCCTATACGCCTGTGGAT 61.481 60.000 0.00 0.00 43.48 3.41
2078 2116 7.899178 ACAACGTAGATGAACATCACAATAA 57.101 32.000 15.63 0.00 40.22 1.40
2088 2126 9.720667 GATGAACATCACAATAAATCGAATGAA 57.279 29.630 9.54 0.00 37.74 2.57
2172 2245 1.202879 AGCTAGACGATGAGGAGAGGG 60.203 57.143 0.00 0.00 0.00 4.30
2244 2323 0.952497 TCTCCTTCGTGTACGCGTCT 60.952 55.000 26.44 0.00 39.60 4.18
2247 2326 1.728074 CTTCGTGTACGCGTCTGCA 60.728 57.895 26.44 11.32 42.97 4.41
2275 2357 0.738975 ATCATCGTCGTCGTCCATGT 59.261 50.000 1.33 0.00 38.33 3.21
2462 2554 3.450115 GAGGTGCCTAGCGTCCGT 61.450 66.667 0.00 0.00 32.38 4.69
2859 2983 7.441157 CCGGTTGTAGATGCTCTTAATCATTAA 59.559 37.037 0.00 0.00 0.00 1.40
3009 3133 4.349048 TCATGAAATCTCCAGGAATCGGAT 59.651 41.667 0.00 0.00 0.00 4.18
3250 3374 5.870978 TCGTCCCGTTCCTAATTTTCTTTAG 59.129 40.000 0.00 0.00 0.00 1.85
3299 3427 2.229792 CATATCATTTCCCCACACCGG 58.770 52.381 0.00 0.00 0.00 5.28
3380 3508 8.637196 TGATCTAGACTACTTTCTGTTCAGAA 57.363 34.615 10.67 10.67 0.00 3.02
3627 3764 2.174685 TCTATCTGGCTGCCAGGTTA 57.825 50.000 39.88 30.12 43.31 2.85
3761 3898 4.394300 GGATGAAGGTCAGTGACTCATTTG 59.606 45.833 22.17 0.00 30.96 2.32
3962 4102 5.443185 ACCTGACATTGCATATGTATTGC 57.557 39.130 13.51 8.52 40.55 3.56
3963 4103 4.279169 ACCTGACATTGCATATGTATTGCC 59.721 41.667 13.51 5.58 39.39 4.52
4156 4296 5.091431 GCACAAGAAGTATGCTCATTTGTC 58.909 41.667 5.12 0.00 36.40 3.18
4206 4346 6.183360 ACCCGTAATATGCAAAAACTTATGGG 60.183 38.462 21.14 21.14 46.93 4.00
4229 4369 3.701205 TCTCTTGGACTTGCAGCAATA 57.299 42.857 8.67 0.00 0.00 1.90
4334 4474 4.305769 TGAAATTTTCAATTGTCGGCTGG 58.694 39.130 9.36 0.00 36.59 4.85
4418 4562 5.221843 TGCCACCACTAGTTTCAGTCTTATT 60.222 40.000 0.00 0.00 0.00 1.40
4419 4563 6.014070 TGCCACCACTAGTTTCAGTCTTATTA 60.014 38.462 0.00 0.00 0.00 0.98
4420 4564 6.535508 GCCACCACTAGTTTCAGTCTTATTAG 59.464 42.308 0.00 0.00 0.00 1.73
4421 4565 6.535508 CCACCACTAGTTTCAGTCTTATTAGC 59.464 42.308 0.00 0.00 0.00 3.09
4422 4566 7.097192 CACCACTAGTTTCAGTCTTATTAGCA 58.903 38.462 0.00 0.00 0.00 3.49
4423 4567 7.063544 CACCACTAGTTTCAGTCTTATTAGCAC 59.936 40.741 0.00 0.00 0.00 4.40
4477 4621 3.766545 ACATCAGGGTTATGCACAAGTT 58.233 40.909 0.00 0.00 0.00 2.66
4679 4823 6.446318 GCAATCTGTTGTGTTTCTCCATTAA 58.554 36.000 0.00 0.00 37.65 1.40
4791 4935 6.922407 GCTCAAAGAATTTTCAGCTTCTCTTT 59.078 34.615 0.00 0.00 38.05 2.52
4792 4936 7.096147 GCTCAAAGAATTTTCAGCTTCTCTTTG 60.096 37.037 13.56 13.56 45.64 2.77
4793 4937 7.775120 TCAAAGAATTTTCAGCTTCTCTTTGT 58.225 30.769 17.29 0.00 45.02 2.83
4795 4939 7.998753 AAGAATTTTCAGCTTCTCTTTGTTG 57.001 32.000 0.00 0.00 31.45 3.33
4809 5015 8.780846 TTCTCTTTGTTGTTGTTGTTCTACTA 57.219 30.769 0.00 0.00 0.00 1.82
4874 5080 4.563976 GCATTCAACGCATTTGCTATTCTT 59.436 37.500 0.51 0.00 39.32 2.52
5348 5572 7.905604 TTCTTTGTACTTGACATACTGATGG 57.094 36.000 0.00 0.00 38.07 3.51
5349 5573 6.406370 TCTTTGTACTTGACATACTGATGGG 58.594 40.000 0.00 0.00 38.07 4.00
5350 5574 6.212589 TCTTTGTACTTGACATACTGATGGGA 59.787 38.462 0.00 0.00 38.07 4.37
5351 5575 6.367374 TTGTACTTGACATACTGATGGGAA 57.633 37.500 0.00 0.00 38.07 3.97
5352 5576 5.730550 TGTACTTGACATACTGATGGGAAC 58.269 41.667 0.00 0.00 37.39 3.62
5353 5577 5.247337 TGTACTTGACATACTGATGGGAACA 59.753 40.000 0.00 0.00 37.82 3.18
5354 5578 6.070251 TGTACTTGACATACTGATGGGAACAT 60.070 38.462 0.00 0.00 43.95 2.71
5355 5579 7.528712 TGTACTTGACATACTGATGGGAACATT 60.529 37.037 0.00 0.00 42.15 2.71
5529 5753 9.442047 TTTGTTTGTAATGTTGTTGATTTCCTT 57.558 25.926 0.00 0.00 0.00 3.36
5530 5754 8.417780 TGTTTGTAATGTTGTTGATTTCCTTG 57.582 30.769 0.00 0.00 0.00 3.61
5665 5890 4.100498 TGTTAAGGTTTGTCTTCTCGGTCT 59.900 41.667 0.00 0.00 0.00 3.85
5729 5954 6.957631 TGCTCCTGATTTTGTTAGATCCTTA 58.042 36.000 0.00 0.00 0.00 2.69
5750 5975 8.832735 TCCTTATTCAGTTATTCCTGGTACTTT 58.167 33.333 0.00 0.00 33.14 2.66
5753 5978 9.667107 TTATTCAGTTATTCCTGGTACTTTCAG 57.333 33.333 0.00 0.00 33.14 3.02
5900 6125 1.967319 TGTGACTTTCTCCCTTGTGC 58.033 50.000 0.00 0.00 0.00 4.57
6097 6322 5.356882 TCTTGAAGTACTTGAATTTGGCG 57.643 39.130 14.14 0.00 0.00 5.69
6098 6323 4.819630 TCTTGAAGTACTTGAATTTGGCGT 59.180 37.500 14.14 0.00 0.00 5.68
6366 6596 7.175119 GCTATTGTTGGAGGTAATATTTCCCTC 59.825 40.741 18.84 18.84 43.35 4.30
6495 6725 7.231317 GGCCATTCCTGATTCATGAGTAAAATA 59.769 37.037 0.00 0.00 0.00 1.40
6496 6726 8.800332 GCCATTCCTGATTCATGAGTAAAATAT 58.200 33.333 0.00 0.00 0.00 1.28
6521 6751 1.490910 GTATGTCCCCTTTGCTAGCCT 59.509 52.381 13.29 0.00 0.00 4.58
6738 6968 3.290710 TCAATCAAGCCTTCCTATTGCC 58.709 45.455 0.00 0.00 0.00 4.52
6756 6986 1.160137 CCGCAGAACCTCCTTTTGAG 58.840 55.000 0.00 0.00 41.07 3.02
6926 7156 3.797865 GCATACAAAATGGCTCATCTGGC 60.798 47.826 0.00 0.00 0.00 4.85
6962 7192 1.901591 ATATCGCTCAGGCAAATGGG 58.098 50.000 0.00 0.00 38.60 4.00
6994 7224 5.239525 AGAGGTGCTCAATTTTTGTACACTC 59.760 40.000 0.00 0.00 37.55 3.51
7173 7417 5.358298 AGACCATTTGAACGAAACTAAGC 57.642 39.130 0.00 0.00 0.00 3.09
7238 9109 5.424121 CCTTTTGAAGGTATTGCTATCGG 57.576 43.478 0.00 0.00 43.95 4.18
7339 9210 4.464951 TCCACGTGTTCTACCATGATTAGT 59.535 41.667 15.65 0.00 0.00 2.24
7340 9211 4.566759 CCACGTGTTCTACCATGATTAGTG 59.433 45.833 15.65 0.00 0.00 2.74
7366 9237 0.169451 TCATGCATTGCAGTGAAGCG 59.831 50.000 17.52 0.00 43.65 4.68
7369 9241 0.667453 TGCATTGCAGTGAAGCGAAA 59.333 45.000 14.15 0.00 37.31 3.46
7370 9242 1.066757 TGCATTGCAGTGAAGCGAAAA 59.933 42.857 14.15 0.00 37.31 2.29
7407 9279 0.107508 GCCAGTGGCTTAGCAGATCA 60.108 55.000 27.48 0.00 46.69 2.92
7409 9281 2.492012 CCAGTGGCTTAGCAGATCATC 58.508 52.381 6.53 0.00 0.00 2.92
7469 9358 6.766467 ACAGTTAAAAGAGAACGAAATGAGGT 59.234 34.615 0.00 0.00 31.85 3.85
7503 9392 1.378531 GCGGCATGTGTTGGAGAATA 58.621 50.000 0.00 0.00 0.00 1.75
7590 9479 8.485976 ACTCTGTATTTGCTATTTGTCTCTTC 57.514 34.615 0.00 0.00 0.00 2.87
7598 9487 5.171476 TGCTATTTGTCTCTTCTCGAAAGG 58.829 41.667 7.27 0.00 0.00 3.11
7617 9506 0.462047 GGCCGGTCTCACATGTAAGG 60.462 60.000 1.90 0.00 0.00 2.69
7618 9507 0.462047 GCCGGTCTCACATGTAAGGG 60.462 60.000 1.90 0.00 0.00 3.95
7619 9508 0.462047 CCGGTCTCACATGTAAGGGC 60.462 60.000 0.00 0.00 0.00 5.19
7620 9509 0.462047 CGGTCTCACATGTAAGGGCC 60.462 60.000 0.00 0.00 0.00 5.80
7621 9510 0.912486 GGTCTCACATGTAAGGGCCT 59.088 55.000 0.00 0.00 0.00 5.19
7622 9511 1.407437 GGTCTCACATGTAAGGGCCTG 60.407 57.143 6.92 0.00 0.00 4.85
7623 9512 1.279271 GTCTCACATGTAAGGGCCTGT 59.721 52.381 6.92 0.00 0.00 4.00
7624 9513 1.985159 TCTCACATGTAAGGGCCTGTT 59.015 47.619 6.92 0.00 0.00 3.16
7625 9514 2.027192 TCTCACATGTAAGGGCCTGTTC 60.027 50.000 6.92 0.80 0.00 3.18
7626 9515 1.086696 CACATGTAAGGGCCTGTTCG 58.913 55.000 6.92 0.00 0.00 3.95
7627 9516 0.035439 ACATGTAAGGGCCTGTTCGG 60.035 55.000 6.92 0.00 0.00 4.30
7628 9517 0.251916 CATGTAAGGGCCTGTTCGGA 59.748 55.000 6.92 0.00 33.16 4.55
7629 9518 1.134098 CATGTAAGGGCCTGTTCGGAT 60.134 52.381 6.92 0.00 33.16 4.18
7630 9519 1.868713 TGTAAGGGCCTGTTCGGATA 58.131 50.000 6.92 0.00 33.16 2.59
7631 9520 2.189676 TGTAAGGGCCTGTTCGGATAA 58.810 47.619 6.92 0.00 33.16 1.75
7632 9521 2.093341 TGTAAGGGCCTGTTCGGATAAC 60.093 50.000 6.92 0.00 33.16 1.89
7633 9522 0.255033 AAGGGCCTGTTCGGATAACC 59.745 55.000 6.92 0.00 33.16 2.85
7634 9523 0.912487 AGGGCCTGTTCGGATAACCA 60.912 55.000 4.50 0.00 35.59 3.67
7635 9524 0.746923 GGGCCTGTTCGGATAACCAC 60.747 60.000 0.84 0.00 35.59 4.16
7636 9525 0.746923 GGCCTGTTCGGATAACCACC 60.747 60.000 0.00 0.00 35.59 4.61
7637 9526 0.252197 GCCTGTTCGGATAACCACCT 59.748 55.000 0.00 0.00 35.59 4.00
7638 9527 2.012051 GCCTGTTCGGATAACCACCTG 61.012 57.143 0.00 0.00 35.59 4.00
7639 9528 1.369625 CTGTTCGGATAACCACCTGC 58.630 55.000 0.00 0.00 35.59 4.85
7640 9529 0.981183 TGTTCGGATAACCACCTGCT 59.019 50.000 0.00 0.00 35.59 4.24
7641 9530 1.066430 TGTTCGGATAACCACCTGCTC 60.066 52.381 0.00 0.00 35.59 4.26
7642 9531 0.539986 TTCGGATAACCACCTGCTCC 59.460 55.000 0.00 0.00 35.59 4.70
7643 9532 1.146263 CGGATAACCACCTGCTCCC 59.854 63.158 0.00 0.00 35.59 4.30
7644 9533 1.338136 CGGATAACCACCTGCTCCCT 61.338 60.000 0.00 0.00 35.59 4.20
7645 9534 0.181350 GGATAACCACCTGCTCCCTG 59.819 60.000 0.00 0.00 35.97 4.45
7646 9535 1.204146 GATAACCACCTGCTCCCTGA 58.796 55.000 0.00 0.00 0.00 3.86
7647 9536 1.559682 GATAACCACCTGCTCCCTGAA 59.440 52.381 0.00 0.00 0.00 3.02
7648 9537 1.440618 TAACCACCTGCTCCCTGAAA 58.559 50.000 0.00 0.00 0.00 2.69
7649 9538 0.779997 AACCACCTGCTCCCTGAAAT 59.220 50.000 0.00 0.00 0.00 2.17
7650 9539 0.779997 ACCACCTGCTCCCTGAAATT 59.220 50.000 0.00 0.00 0.00 1.82
7651 9540 1.147817 ACCACCTGCTCCCTGAAATTT 59.852 47.619 0.00 0.00 0.00 1.82
7652 9541 1.821136 CCACCTGCTCCCTGAAATTTC 59.179 52.381 11.41 11.41 0.00 2.17
7653 9542 2.517959 CACCTGCTCCCTGAAATTTCA 58.482 47.619 19.45 19.45 35.57 2.69
7669 9558 7.565680 TGAAATTTCAGAATCTAGGGAGTACC 58.434 38.462 16.91 0.00 34.21 3.34
7670 9559 7.403231 TGAAATTTCAGAATCTAGGGAGTACCT 59.597 37.037 16.91 0.00 41.89 3.08
7678 9567 4.752514 GGGAGTACCTACATGCGC 57.247 61.111 0.00 0.00 35.85 6.09
7679 9568 2.125178 GGGAGTACCTACATGCGCT 58.875 57.895 9.73 0.00 35.85 5.92
7680 9569 0.032267 GGGAGTACCTACATGCGCTC 59.968 60.000 9.73 0.00 35.85 5.03
7681 9570 0.032267 GGAGTACCTACATGCGCTCC 59.968 60.000 9.73 0.00 36.21 4.70
7682 9571 0.744874 GAGTACCTACATGCGCTCCA 59.255 55.000 9.73 0.00 0.00 3.86
7683 9572 0.460311 AGTACCTACATGCGCTCCAC 59.540 55.000 9.73 0.00 0.00 4.02
7700 9589 5.758924 GCTCCACGATTTTTAACTTGAACT 58.241 37.500 0.00 0.00 0.00 3.01
7701 9590 5.851703 GCTCCACGATTTTTAACTTGAACTC 59.148 40.000 0.00 0.00 0.00 3.01
7702 9591 6.308371 TCCACGATTTTTAACTTGAACTCC 57.692 37.500 0.00 0.00 0.00 3.85
7703 9592 5.049954 TCCACGATTTTTAACTTGAACTCCG 60.050 40.000 0.00 0.00 0.00 4.63
7704 9593 4.611366 CACGATTTTTAACTTGAACTCCGC 59.389 41.667 0.00 0.00 0.00 5.54
7705 9594 4.156182 CGATTTTTAACTTGAACTCCGCC 58.844 43.478 0.00 0.00 0.00 6.13
7706 9595 3.994204 TTTTTAACTTGAACTCCGCCC 57.006 42.857 0.00 0.00 0.00 6.13
7707 9596 1.515081 TTTAACTTGAACTCCGCCCG 58.485 50.000 0.00 0.00 0.00 6.13
7708 9597 0.952010 TTAACTTGAACTCCGCCCGC 60.952 55.000 0.00 0.00 0.00 6.13
7709 9598 1.823169 TAACTTGAACTCCGCCCGCT 61.823 55.000 0.00 0.00 0.00 5.52
7710 9599 2.815647 CTTGAACTCCGCCCGCTC 60.816 66.667 0.00 0.00 0.00 5.03
7711 9600 4.388499 TTGAACTCCGCCCGCTCC 62.388 66.667 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 8.294577 TGCGTCTATGATATGTCTTAAACGTAT 58.705 33.333 11.16 3.60 41.77 3.06
63 64 7.588854 GTGCGTCTATGATATGTCTTAAACGTA 59.411 37.037 11.16 5.79 33.47 3.57
64 65 6.417044 GTGCGTCTATGATATGTCTTAAACGT 59.583 38.462 11.16 0.00 33.47 3.99
65 66 6.397584 CGTGCGTCTATGATATGTCTTAAACG 60.398 42.308 6.81 6.81 33.83 3.60
66 67 6.417044 ACGTGCGTCTATGATATGTCTTAAAC 59.583 38.462 0.00 0.00 0.00 2.01
67 68 6.500910 ACGTGCGTCTATGATATGTCTTAAA 58.499 36.000 0.00 0.00 0.00 1.52
68 69 6.068473 ACGTGCGTCTATGATATGTCTTAA 57.932 37.500 0.00 0.00 0.00 1.85
69 70 5.684550 ACGTGCGTCTATGATATGTCTTA 57.315 39.130 0.00 0.00 0.00 2.10
70 71 4.569761 ACGTGCGTCTATGATATGTCTT 57.430 40.909 0.00 0.00 0.00 3.01
71 72 4.514066 TGTACGTGCGTCTATGATATGTCT 59.486 41.667 0.00 0.00 0.00 3.41
72 73 4.779987 TGTACGTGCGTCTATGATATGTC 58.220 43.478 0.00 0.00 0.00 3.06
73 74 4.823790 TGTACGTGCGTCTATGATATGT 57.176 40.909 0.00 0.00 0.00 2.29
74 75 5.856455 TGATTGTACGTGCGTCTATGATATG 59.144 40.000 0.00 0.00 0.00 1.78
75 76 5.856986 GTGATTGTACGTGCGTCTATGATAT 59.143 40.000 0.00 0.00 0.00 1.63
76 77 5.209977 GTGATTGTACGTGCGTCTATGATA 58.790 41.667 0.00 0.00 0.00 2.15
77 78 4.042398 GTGATTGTACGTGCGTCTATGAT 58.958 43.478 0.00 0.00 0.00 2.45
78 79 3.431856 GTGATTGTACGTGCGTCTATGA 58.568 45.455 0.00 0.00 0.00 2.15
79 80 2.534349 GGTGATTGTACGTGCGTCTATG 59.466 50.000 0.00 0.00 0.00 2.23
80 81 2.480759 GGGTGATTGTACGTGCGTCTAT 60.481 50.000 0.00 0.00 0.00 1.98
81 82 1.135315 GGGTGATTGTACGTGCGTCTA 60.135 52.381 0.00 0.00 0.00 2.59
82 83 0.389426 GGGTGATTGTACGTGCGTCT 60.389 55.000 0.00 0.00 0.00 4.18
83 84 1.356527 GGGGTGATTGTACGTGCGTC 61.357 60.000 0.00 0.00 0.00 5.19
84 85 1.375013 GGGGTGATTGTACGTGCGT 60.375 57.895 0.00 2.05 0.00 5.24
85 86 0.173935 TAGGGGTGATTGTACGTGCG 59.826 55.000 0.00 0.00 0.00 5.34
86 87 2.210116 CATAGGGGTGATTGTACGTGC 58.790 52.381 0.00 0.00 0.00 5.34
87 88 2.432874 TCCATAGGGGTGATTGTACGTG 59.567 50.000 0.00 0.00 38.11 4.49
88 89 2.754465 TCCATAGGGGTGATTGTACGT 58.246 47.619 0.00 0.00 38.11 3.57
98 99 2.106511 GTGTACATGCATCCATAGGGGT 59.893 50.000 0.00 0.00 38.11 4.95
99 100 2.106338 TGTGTACATGCATCCATAGGGG 59.894 50.000 0.00 0.00 38.37 4.79
100 101 3.141398 GTGTGTACATGCATCCATAGGG 58.859 50.000 0.00 0.00 0.00 3.53
101 102 3.807553 TGTGTGTACATGCATCCATAGG 58.192 45.455 0.00 0.00 0.00 2.57
102 103 5.761726 AGAATGTGTGTACATGCATCCATAG 59.238 40.000 13.20 0.00 46.54 2.23
103 104 5.683681 AGAATGTGTGTACATGCATCCATA 58.316 37.500 13.20 0.00 46.54 2.74
104 105 4.529897 AGAATGTGTGTACATGCATCCAT 58.470 39.130 13.20 1.26 46.54 3.41
105 106 3.954200 AGAATGTGTGTACATGCATCCA 58.046 40.909 13.20 0.00 46.54 3.41
106 107 5.180117 GGATAGAATGTGTGTACATGCATCC 59.820 44.000 13.20 8.62 46.54 3.51
107 108 5.759763 TGGATAGAATGTGTGTACATGCATC 59.240 40.000 13.20 8.64 46.54 3.91
108 109 5.683681 TGGATAGAATGTGTGTACATGCAT 58.316 37.500 0.00 4.05 46.54 3.96
109 110 5.096443 TGGATAGAATGTGTGTACATGCA 57.904 39.130 0.00 1.48 46.54 3.96
110 111 5.528690 ACATGGATAGAATGTGTGTACATGC 59.471 40.000 0.00 0.00 46.54 4.06
111 112 6.951643 CACATGGATAGAATGTGTGTACATG 58.048 40.000 0.00 0.00 46.54 3.21
120 121 1.942657 GTGCGCACATGGATAGAATGT 59.057 47.619 34.52 0.00 38.81 2.71
121 122 1.265095 GGTGCGCACATGGATAGAATG 59.735 52.381 38.60 0.00 0.00 2.67
122 123 1.141657 AGGTGCGCACATGGATAGAAT 59.858 47.619 38.60 10.43 0.00 2.40
123 124 0.541392 AGGTGCGCACATGGATAGAA 59.459 50.000 38.60 0.00 0.00 2.10
124 125 0.541392 AAGGTGCGCACATGGATAGA 59.459 50.000 38.60 0.00 0.00 1.98
125 126 0.940126 GAAGGTGCGCACATGGATAG 59.060 55.000 38.60 0.00 0.00 2.08
126 127 0.809636 CGAAGGTGCGCACATGGATA 60.810 55.000 38.60 0.00 0.00 2.59
127 128 2.108514 CGAAGGTGCGCACATGGAT 61.109 57.895 38.60 20.17 0.00 3.41
128 129 2.741985 CGAAGGTGCGCACATGGA 60.742 61.111 38.60 0.00 0.00 3.41
129 130 2.741985 TCGAAGGTGCGCACATGG 60.742 61.111 38.60 27.35 0.00 3.66
130 131 2.231745 CTGTCGAAGGTGCGCACATG 62.232 60.000 38.60 22.91 0.00 3.21
131 132 2.029288 CTGTCGAAGGTGCGCACAT 61.029 57.895 38.60 32.11 0.00 3.21
132 133 2.434658 ATCTGTCGAAGGTGCGCACA 62.435 55.000 38.60 18.06 0.00 4.57
133 134 1.291877 AATCTGTCGAAGGTGCGCAC 61.292 55.000 32.15 32.15 0.00 5.34
134 135 1.005037 AATCTGTCGAAGGTGCGCA 60.005 52.632 5.66 5.66 0.00 6.09
135 136 1.014044 TCAATCTGTCGAAGGTGCGC 61.014 55.000 0.00 0.00 0.00 6.09
136 137 0.994995 CTCAATCTGTCGAAGGTGCG 59.005 55.000 0.00 0.00 0.00 5.34
137 138 0.723981 GCTCAATCTGTCGAAGGTGC 59.276 55.000 0.00 0.00 0.00 5.01
138 139 1.998315 CAGCTCAATCTGTCGAAGGTG 59.002 52.381 0.00 0.00 0.00 4.00
139 140 1.066573 CCAGCTCAATCTGTCGAAGGT 60.067 52.381 0.00 0.00 32.32 3.50
140 141 1.649664 CCAGCTCAATCTGTCGAAGG 58.350 55.000 0.00 0.00 32.32 3.46
141 142 1.005340 GCCAGCTCAATCTGTCGAAG 58.995 55.000 0.00 0.00 32.32 3.79
142 143 0.391661 GGCCAGCTCAATCTGTCGAA 60.392 55.000 0.00 0.00 32.32 3.71
143 144 1.219124 GGCCAGCTCAATCTGTCGA 59.781 57.895 0.00 0.00 32.32 4.20
144 145 2.169789 CGGCCAGCTCAATCTGTCG 61.170 63.158 2.24 0.00 32.32 4.35
145 146 1.817099 CCGGCCAGCTCAATCTGTC 60.817 63.158 2.24 0.00 32.32 3.51
146 147 2.129555 AACCGGCCAGCTCAATCTGT 62.130 55.000 0.00 0.00 32.32 3.41
147 148 0.962356 AAACCGGCCAGCTCAATCTG 60.962 55.000 0.00 0.00 0.00 2.90
148 149 0.251341 AAAACCGGCCAGCTCAATCT 60.251 50.000 0.00 0.00 0.00 2.40
149 150 1.459450 TAAAACCGGCCAGCTCAATC 58.541 50.000 0.00 0.00 0.00 2.67
150 151 1.818674 CTTAAAACCGGCCAGCTCAAT 59.181 47.619 0.00 0.00 0.00 2.57
151 152 1.243902 CTTAAAACCGGCCAGCTCAA 58.756 50.000 0.00 0.00 0.00 3.02
152 153 0.109723 ACTTAAAACCGGCCAGCTCA 59.890 50.000 0.00 0.00 0.00 4.26
153 154 1.244816 AACTTAAAACCGGCCAGCTC 58.755 50.000 0.00 0.00 0.00 4.09
154 155 1.339929 CAAACTTAAAACCGGCCAGCT 59.660 47.619 0.00 0.00 0.00 4.24
155 156 1.067974 ACAAACTTAAAACCGGCCAGC 59.932 47.619 0.00 0.00 0.00 4.85
156 157 3.446310 AACAAACTTAAAACCGGCCAG 57.554 42.857 0.00 0.00 0.00 4.85
157 158 4.996788 TTAACAAACTTAAAACCGGCCA 57.003 36.364 0.00 0.00 0.00 5.36
158 159 6.847956 ATTTTAACAAACTTAAAACCGGCC 57.152 33.333 0.00 0.00 36.89 6.13
159 160 6.629649 GCAATTTTAACAAACTTAAAACCGGC 59.370 34.615 0.00 2.69 36.89 6.13
160 161 7.127042 GGCAATTTTAACAAACTTAAAACCGG 58.873 34.615 0.00 0.00 36.89 5.28
161 162 7.636745 GTGGCAATTTTAACAAACTTAAAACCG 59.363 33.333 0.00 0.00 36.89 4.44
162 163 8.451748 TGTGGCAATTTTAACAAACTTAAAACC 58.548 29.630 0.00 0.51 36.89 3.27
163 164 9.484326 CTGTGGCAATTTTAACAAACTTAAAAC 57.516 29.630 0.00 0.00 36.89 2.43
164 165 9.436957 TCTGTGGCAATTTTAACAAACTTAAAA 57.563 25.926 0.00 1.56 37.98 1.52
165 166 8.874816 GTCTGTGGCAATTTTAACAAACTTAAA 58.125 29.630 0.00 0.00 0.00 1.52
166 167 7.221067 CGTCTGTGGCAATTTTAACAAACTTAA 59.779 33.333 0.00 0.00 0.00 1.85
167 168 6.693545 CGTCTGTGGCAATTTTAACAAACTTA 59.306 34.615 0.00 0.00 0.00 2.24
168 169 5.518487 CGTCTGTGGCAATTTTAACAAACTT 59.482 36.000 0.00 0.00 0.00 2.66
169 170 5.040635 CGTCTGTGGCAATTTTAACAAACT 58.959 37.500 0.00 0.00 0.00 2.66
170 171 4.317769 GCGTCTGTGGCAATTTTAACAAAC 60.318 41.667 0.00 0.00 0.00 2.93
171 172 3.799420 GCGTCTGTGGCAATTTTAACAAA 59.201 39.130 0.00 0.00 0.00 2.83
172 173 3.376540 GCGTCTGTGGCAATTTTAACAA 58.623 40.909 0.00 0.00 0.00 2.83
173 174 2.287909 GGCGTCTGTGGCAATTTTAACA 60.288 45.455 0.00 0.00 0.00 2.41
174 175 2.030274 AGGCGTCTGTGGCAATTTTAAC 60.030 45.455 0.00 0.00 36.77 2.01
175 176 2.227865 GAGGCGTCTGTGGCAATTTTAA 59.772 45.455 0.00 0.00 36.77 1.52
176 177 1.810151 GAGGCGTCTGTGGCAATTTTA 59.190 47.619 0.00 0.00 36.77 1.52
177 178 0.598065 GAGGCGTCTGTGGCAATTTT 59.402 50.000 0.00 0.00 36.77 1.82
178 179 1.577328 CGAGGCGTCTGTGGCAATTT 61.577 55.000 0.00 0.00 36.77 1.82
179 180 2.034879 CGAGGCGTCTGTGGCAATT 61.035 57.895 0.00 0.00 36.77 2.32
180 181 1.884075 TACGAGGCGTCTGTGGCAAT 61.884 55.000 0.00 0.00 41.54 3.56
181 182 2.486636 CTACGAGGCGTCTGTGGCAA 62.487 60.000 0.00 0.00 41.54 4.52
182 183 2.986979 TACGAGGCGTCTGTGGCA 60.987 61.111 0.00 0.00 41.54 4.92
183 184 2.202623 CTACGAGGCGTCTGTGGC 60.203 66.667 0.00 0.00 41.54 5.01
184 185 2.202623 GCTACGAGGCGTCTGTGG 60.203 66.667 0.00 7.46 41.54 4.17
185 186 1.515088 CAGCTACGAGGCGTCTGTG 60.515 63.158 0.00 0.00 41.54 3.66
186 187 1.674651 TCAGCTACGAGGCGTCTGT 60.675 57.895 0.00 6.94 41.54 3.41
187 188 1.226435 GTCAGCTACGAGGCGTCTG 60.226 63.158 0.00 0.00 41.54 3.51
188 189 3.188965 GTCAGCTACGAGGCGTCT 58.811 61.111 4.69 0.00 41.54 4.18
197 198 4.832590 ATATAGTGTGTCCGTCAGCTAC 57.167 45.455 0.00 0.00 0.00 3.58
198 199 6.713450 TGATAATATAGTGTGTCCGTCAGCTA 59.287 38.462 0.00 0.00 0.00 3.32
199 200 5.535030 TGATAATATAGTGTGTCCGTCAGCT 59.465 40.000 0.00 0.00 0.00 4.24
200 201 5.769367 TGATAATATAGTGTGTCCGTCAGC 58.231 41.667 0.00 0.00 0.00 4.26
201 202 8.642908 TTTTGATAATATAGTGTGTCCGTCAG 57.357 34.615 0.00 0.00 0.00 3.51
202 203 8.471609 TCTTTTGATAATATAGTGTGTCCGTCA 58.528 33.333 0.00 0.00 0.00 4.35
203 204 8.867112 TCTTTTGATAATATAGTGTGTCCGTC 57.133 34.615 0.00 0.00 0.00 4.79
204 205 8.475639 ACTCTTTTGATAATATAGTGTGTCCGT 58.524 33.333 0.00 0.00 0.00 4.69
205 206 8.873215 ACTCTTTTGATAATATAGTGTGTCCG 57.127 34.615 0.00 0.00 0.00 4.79
273 274 5.699458 TCGGGTTCAAAGTTCTAGATTTGAC 59.301 40.000 17.27 13.18 43.21 3.18
289 290 1.899437 GAGCTGGTCCATCGGGTTCA 61.899 60.000 0.00 0.00 34.93 3.18
368 369 9.484326 GTGTATTTTGTTTTCACCAATGTTTTC 57.516 29.630 0.00 0.00 0.00 2.29
377 380 5.449304 CCTCGAGTGTATTTTGTTTTCACC 58.551 41.667 12.31 0.00 0.00 4.02
395 398 2.762327 GTGGTGGTTTATACTCCCTCGA 59.238 50.000 0.00 0.00 0.00 4.04
396 399 2.480759 CGTGGTGGTTTATACTCCCTCG 60.481 54.545 0.00 0.00 0.00 4.63
397 400 2.740904 GCGTGGTGGTTTATACTCCCTC 60.741 54.545 0.00 0.00 0.00 4.30
445 448 7.494952 ACGAGTATATATGAGCGCTTGTATCTA 59.505 37.037 13.26 7.58 0.00 1.98
449 452 5.874895 ACGAGTATATATGAGCGCTTGTA 57.125 39.130 13.26 8.38 0.00 2.41
455 458 5.220624 GGAGGTGTACGAGTATATATGAGCG 60.221 48.000 0.00 0.00 0.00 5.03
457 460 6.093771 GGTGGAGGTGTACGAGTATATATGAG 59.906 46.154 0.00 0.00 0.00 2.90
459 462 5.944599 AGGTGGAGGTGTACGAGTATATATG 59.055 44.000 0.00 0.00 0.00 1.78
467 470 2.414994 TAGAGGTGGAGGTGTACGAG 57.585 55.000 0.00 0.00 0.00 4.18
468 471 2.240414 TCATAGAGGTGGAGGTGTACGA 59.760 50.000 0.00 0.00 0.00 3.43
469 472 2.651455 TCATAGAGGTGGAGGTGTACG 58.349 52.381 0.00 0.00 0.00 3.67
477 480 1.067142 GTGTGCGTTCATAGAGGTGGA 60.067 52.381 0.00 0.00 0.00 4.02
478 481 1.337728 TGTGTGCGTTCATAGAGGTGG 60.338 52.381 0.00 0.00 0.00 4.61
489 492 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
495 498 0.532573 AGAGATAGGGTGTGCGTGTG 59.467 55.000 0.00 0.00 0.00 3.82
504 507 3.501385 GGAGGTGCTCATAGAGATAGGGT 60.501 52.174 0.00 0.00 31.08 4.34
506 509 2.752354 CGGAGGTGCTCATAGAGATAGG 59.248 54.545 0.00 0.00 31.08 2.57
507 510 3.680490 TCGGAGGTGCTCATAGAGATAG 58.320 50.000 0.00 0.00 31.08 2.08
511 514 2.690497 TCTTTCGGAGGTGCTCATAGAG 59.310 50.000 0.00 0.00 31.08 2.43
513 516 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
516 519 0.603569 GAGTCTTTCGGAGGTGCTCA 59.396 55.000 0.00 0.00 31.08 4.26
525 528 0.108615 ATGTCGGCTGAGTCTTTCGG 60.109 55.000 0.00 0.00 35.13 4.30
527 530 3.067106 TGAAATGTCGGCTGAGTCTTTC 58.933 45.455 13.64 13.64 0.00 2.62
529 532 2.839486 TGAAATGTCGGCTGAGTCTT 57.161 45.000 0.00 0.00 0.00 3.01
535 538 4.424061 TCTCAAAATGAAATGTCGGCTG 57.576 40.909 0.00 0.00 0.00 4.85
538 541 8.741101 TGTAAAATCTCAAAATGAAATGTCGG 57.259 30.769 0.00 0.00 0.00 4.79
550 553 7.148474 GCCTACGATGACTTGTAAAATCTCAAA 60.148 37.037 0.00 0.00 0.00 2.69
562 565 1.132453 TGAGACGCCTACGATGACTTG 59.868 52.381 0.00 0.00 43.93 3.16
570 573 2.096980 TGTCAACTATGAGACGCCTACG 59.903 50.000 0.00 0.00 40.11 3.51
571 574 3.489398 CCTGTCAACTATGAGACGCCTAC 60.489 52.174 0.00 0.00 37.58 3.18
578 581 4.079970 AGACGTTCCTGTCAACTATGAGA 58.920 43.478 0.00 0.00 41.41 3.27
582 585 3.870633 GGAGACGTTCCTGTCAACTAT 57.129 47.619 8.87 0.00 43.16 2.12
593 596 3.490399 CGTTCAGTAGAAGGAGACGTTC 58.510 50.000 0.00 0.00 41.03 3.95
597 600 1.199558 ACGCGTTCAGTAGAAGGAGAC 59.800 52.381 5.58 0.00 40.40 3.36
602 605 1.774085 GCGATACGCGTTCAGTAGAAG 59.226 52.381 20.78 1.88 44.55 2.85
617 620 8.934507 AATTTATTTCAAAATTTCCGGCGATA 57.065 26.923 9.30 0.00 35.96 2.92
633 636 9.236691 TGCTCGCATTTATTCTGAATTTATTTC 57.763 29.630 8.38 0.00 34.72 2.17
658 661 2.000701 TATCCCCAGCCCACCAGTG 61.001 63.158 0.00 0.00 0.00 3.66
672 675 7.037873 TGGATGGTTAGGTGTATAATGGTATCC 60.038 40.741 0.00 0.00 0.00 2.59
673 676 7.913789 TGGATGGTTAGGTGTATAATGGTATC 58.086 38.462 0.00 0.00 0.00 2.24
680 683 5.251005 TGTGGTTGGATGGTTAGGTGTATAA 59.749 40.000 0.00 0.00 0.00 0.98
682 685 3.589735 TGTGGTTGGATGGTTAGGTGTAT 59.410 43.478 0.00 0.00 0.00 2.29
684 687 1.777878 TGTGGTTGGATGGTTAGGTGT 59.222 47.619 0.00 0.00 0.00 4.16
692 695 3.065786 CGAATCAATCTGTGGTTGGATGG 59.934 47.826 0.00 0.00 27.56 3.51
696 699 1.133025 GGCGAATCAATCTGTGGTTGG 59.867 52.381 0.00 0.00 27.56 3.77
708 711 1.803334 AAGTTAAGCGTGGCGAATCA 58.197 45.000 0.00 0.00 0.00 2.57
710 713 3.332034 AGTAAAGTTAAGCGTGGCGAAT 58.668 40.909 0.00 0.00 0.00 3.34
713 716 4.650545 TTAAGTAAAGTTAAGCGTGGCG 57.349 40.909 0.00 0.00 0.00 5.69
731 734 8.428186 TTCTTCTTCTTGTTTAGCGAGTTTAA 57.572 30.769 0.00 0.00 0.00 1.52
732 735 7.709613 ACTTCTTCTTCTTGTTTAGCGAGTTTA 59.290 33.333 0.00 0.00 0.00 2.01
737 740 7.758528 GGTATACTTCTTCTTCTTGTTTAGCGA 59.241 37.037 2.25 0.00 0.00 4.93
924 942 1.770927 TTGGTTGAGGGACCGGGAA 60.771 57.895 6.32 0.00 42.83 3.97
925 943 2.122324 TTGGTTGAGGGACCGGGA 60.122 61.111 6.32 0.00 42.83 5.14
1336 1354 2.233922 CAGTAAGTCCGTCCATCTGGTT 59.766 50.000 0.00 0.00 36.34 3.67
1338 1356 1.471676 GCAGTAAGTCCGTCCATCTGG 60.472 57.143 0.00 0.00 0.00 3.86
1472 1490 3.447586 AGTAGACACCAATGATGTACGCT 59.552 43.478 0.00 0.00 0.00 5.07
1652 1681 3.981071 TCTCCACACCTGATTAACCAG 57.019 47.619 0.00 0.00 0.00 4.00
1725 1754 3.572642 TGTTCTTCCAGGTCACTACAGA 58.427 45.455 0.00 0.00 0.00 3.41
1763 1792 2.341257 TCGAATTTCTGTGCTCTGAGC 58.659 47.619 22.38 22.38 42.82 4.26
1886 1915 6.946340 TGTAGATGCTCTAAATGGTCTTTGA 58.054 36.000 0.00 0.00 29.58 2.69
1967 1996 2.848679 TGCCCAGTCAGTGCCAGA 60.849 61.111 0.00 0.00 0.00 3.86
2085 2123 6.353323 TGCCCGAATCTGTCTATATTTTTCA 58.647 36.000 0.00 0.00 0.00 2.69
2088 2126 7.680730 ACTATGCCCGAATCTGTCTATATTTT 58.319 34.615 0.00 0.00 0.00 1.82
2098 2136 0.861837 GCGAACTATGCCCGAATCTG 59.138 55.000 0.00 0.00 0.00 2.90
2172 2245 0.819666 GCCCGAAATGGTGATCTCCC 60.820 60.000 11.24 3.34 35.15 4.30
2244 2323 2.824546 GATGATCCTCCCGCTGCA 59.175 61.111 0.00 0.00 0.00 4.41
2247 2326 2.556459 CGACGATGATCCTCCCGCT 61.556 63.158 0.00 0.00 0.00 5.52
2275 2357 4.329545 GGAGAGCGGCACCACCAA 62.330 66.667 1.45 0.00 39.03 3.67
2449 2541 3.138798 GGAGACGGACGCTAGGCA 61.139 66.667 0.00 0.00 0.00 4.75
2514 2606 1.978080 TTCCGTCCCCGTCGATTCA 60.978 57.895 0.00 0.00 0.00 2.57
2517 2609 3.818787 CGTTCCGTCCCCGTCGAT 61.819 66.667 0.00 0.00 0.00 3.59
2727 2850 4.845580 CCGCCGCAATGCTCCTCT 62.846 66.667 2.94 0.00 0.00 3.69
2769 2892 4.462417 CTCGAGCTCCGTCGCGTT 62.462 66.667 8.47 0.00 39.90 4.84
2888 3012 4.928263 AGCAGCTCTTTATTTTCCTCCTT 58.072 39.130 0.00 0.00 0.00 3.36
2995 3119 3.834813 TCCTAATCATCCGATTCCTGGAG 59.165 47.826 0.00 0.00 41.09 3.86
3226 3350 5.870978 CTAAAGAAAATTAGGAACGGGACGA 59.129 40.000 0.00 0.00 40.72 4.20
3250 3374 2.287393 AAACGGTTGGCAAGTCAAAC 57.713 45.000 0.00 0.00 0.00 2.93
3299 3427 7.990314 AGATACTAATTCTTGAAAGAGAAGGCC 59.010 37.037 0.00 0.00 38.90 5.19
3380 3508 5.631119 ACCAAAGGTAGATGTTAGCAAGTT 58.369 37.500 0.00 0.00 32.11 2.66
3524 3652 5.380043 AGCAGCATAGGTAGCAACAATAAT 58.620 37.500 0.00 0.00 0.00 1.28
3566 3694 9.646522 ACCAGGTAAAAAGAATATGCAAGATAT 57.353 29.630 0.00 0.00 0.00 1.63
3589 3726 8.204160 CAGATAGATCAACCATAACTTGTACCA 58.796 37.037 0.00 0.00 0.00 3.25
3590 3727 7.657761 CCAGATAGATCAACCATAACTTGTACC 59.342 40.741 0.00 0.00 0.00 3.34
3700 3837 4.021632 TGCTTAGTTGCAATAACATTGCCA 60.022 37.500 18.43 7.37 44.32 4.92
4206 4346 0.520847 GCTGCAAGTCCAAGAGAAGC 59.479 55.000 0.00 0.00 35.30 3.86
4260 4400 6.995686 TGTAGCAGTTTCTGAAAGGTAATGAA 59.004 34.615 2.48 0.00 32.44 2.57
4318 4458 1.611491 GGAACCAGCCGACAATTGAAA 59.389 47.619 13.59 0.00 0.00 2.69
4361 4501 9.533831 ACATCCAGAACTTTAAATGGAACTAAT 57.466 29.630 11.33 0.00 44.63 1.73
4374 4518 5.716228 TGGCATAATTCACATCCAGAACTTT 59.284 36.000 0.00 0.00 0.00 2.66
4418 4562 5.348986 CCTTTTGCTCTATAACTCGTGCTA 58.651 41.667 0.00 0.00 0.00 3.49
4419 4563 4.184629 CCTTTTGCTCTATAACTCGTGCT 58.815 43.478 0.00 0.00 0.00 4.40
4420 4564 3.242446 GCCTTTTGCTCTATAACTCGTGC 60.242 47.826 0.00 0.00 36.87 5.34
4421 4565 3.932710 TGCCTTTTGCTCTATAACTCGTG 59.067 43.478 0.00 0.00 42.00 4.35
4422 4566 3.933332 GTGCCTTTTGCTCTATAACTCGT 59.067 43.478 0.00 0.00 42.00 4.18
4423 4567 3.932710 TGTGCCTTTTGCTCTATAACTCG 59.067 43.478 0.00 0.00 42.00 4.18
4477 4621 4.277423 GCCTTTTGCTCCTTAACAAGTACA 59.723 41.667 0.00 0.00 36.87 2.90
4679 4823 2.277969 CACTCTCAAGCAGCATCGATT 58.722 47.619 0.00 0.00 0.00 3.34
4753 4897 3.062763 TCTTTGAGCAGAGAAGAAAGCG 58.937 45.455 0.00 0.00 0.00 4.68
4791 4935 8.725405 TTCATCTTAGTAGAACAACAACAACA 57.275 30.769 0.00 0.00 33.20 3.33
4795 4939 8.604890 GCCTATTCATCTTAGTAGAACAACAAC 58.395 37.037 0.00 0.00 33.20 3.32
4809 5015 7.995488 AGCACTATTTAACAGCCTATTCATCTT 59.005 33.333 0.00 0.00 0.00 2.40
5082 5294 6.810911 ACAGTGCACACCATACAAATTAAAA 58.189 32.000 21.04 0.00 0.00 1.52
5346 5570 6.042552 TGGCAAGAAAAATCTAAATGTTCCCA 59.957 34.615 0.00 0.00 0.00 4.37
5348 5572 7.961325 TTGGCAAGAAAAATCTAAATGTTCC 57.039 32.000 0.00 0.00 0.00 3.62
5351 5575 9.101655 GCATATTGGCAAGAAAAATCTAAATGT 57.898 29.630 5.96 0.00 0.00 2.71
5352 5576 9.321562 AGCATATTGGCAAGAAAAATCTAAATG 57.678 29.630 5.96 0.00 35.83 2.32
5353 5577 9.895138 AAGCATATTGGCAAGAAAAATCTAAAT 57.105 25.926 5.96 0.00 35.83 1.40
5354 5578 9.153721 CAAGCATATTGGCAAGAAAAATCTAAA 57.846 29.630 5.96 0.00 35.83 1.85
5355 5579 7.278424 GCAAGCATATTGGCAAGAAAAATCTAA 59.722 33.333 5.96 0.00 35.83 2.10
5356 5580 6.757947 GCAAGCATATTGGCAAGAAAAATCTA 59.242 34.615 5.96 0.00 35.83 1.98
5357 5581 5.583457 GCAAGCATATTGGCAAGAAAAATCT 59.417 36.000 5.96 0.00 35.83 2.40
5358 5582 5.583457 AGCAAGCATATTGGCAAGAAAAATC 59.417 36.000 5.96 0.00 35.83 2.17
5359 5583 5.493809 AGCAAGCATATTGGCAAGAAAAAT 58.506 33.333 5.96 0.00 35.83 1.82
5376 5600 9.249457 GGATAAGTTTGGATATTTAAAGCAAGC 57.751 33.333 0.00 0.00 0.00 4.01
5489 5713 9.319143 CATTACAAACAAAACAGAATTTACCCA 57.681 29.630 0.00 0.00 0.00 4.51
5529 5753 7.397892 TTTCTCAAACACACAAAAGGATACA 57.602 32.000 0.00 0.00 41.41 2.29
5530 5754 8.696410 TTTTTCTCAAACACACAAAAGGATAC 57.304 30.769 0.00 0.00 0.00 2.24
5573 5798 4.789012 ACACATTGGCCAAGTATGAAAG 57.211 40.909 24.94 14.10 0.00 2.62
5665 5890 1.113788 AGTTGAGCTGGCTTTGCAAA 58.886 45.000 12.14 12.14 0.00 3.68
5729 5954 6.599638 GCTGAAAGTACCAGGAATAACTGAAT 59.400 38.462 0.00 0.00 37.11 2.57
5995 6220 1.204941 GACCACTATCGCCACTTCTGT 59.795 52.381 0.00 0.00 0.00 3.41
6097 6322 6.743575 AAACAACAGAATGGAGTATAGCAC 57.256 37.500 0.00 0.00 43.62 4.40
6098 6323 6.374333 GGAAAACAACAGAATGGAGTATAGCA 59.626 38.462 0.00 0.00 43.62 3.49
6197 6427 9.686683 AGTATAAAATGCATGACTTAAGGTCTT 57.313 29.630 7.53 0.00 44.74 3.01
6222 6452 5.657474 ACTGATGCCTTGCAAAAATATCAG 58.343 37.500 25.39 25.39 43.62 2.90
6495 6725 3.039011 AGCAAAGGGGACATACTCGTAT 58.961 45.455 0.00 0.00 0.00 3.06
6496 6726 2.463752 AGCAAAGGGGACATACTCGTA 58.536 47.619 0.00 0.00 0.00 3.43
6497 6727 1.276622 AGCAAAGGGGACATACTCGT 58.723 50.000 0.00 0.00 0.00 4.18
6498 6728 2.803492 GCTAGCAAAGGGGACATACTCG 60.803 54.545 10.63 0.00 0.00 4.18
6499 6729 2.485657 GGCTAGCAAAGGGGACATACTC 60.486 54.545 18.24 0.00 0.00 2.59
6500 6730 1.490910 GGCTAGCAAAGGGGACATACT 59.509 52.381 18.24 0.00 0.00 2.12
6506 6736 1.768870 GACATAGGCTAGCAAAGGGGA 59.231 52.381 18.24 0.00 0.00 4.81
6521 6751 7.638444 TCATAGTTTTCCAATTCCAGGACATA 58.362 34.615 0.00 0.00 34.19 2.29
6682 6912 0.321671 TGCCGAGTTCCCTCTTCTTG 59.678 55.000 0.00 0.00 35.43 3.02
6926 7156 4.381863 GCGATATACCAACATCACAGTACG 59.618 45.833 0.00 0.00 0.00 3.67
6962 7192 5.382618 AAATTGAGCACCTCTGAAATGTC 57.617 39.130 0.00 0.00 0.00 3.06
7146 7381 9.329913 CTTAGTTTCGTTCAAATGGTCTTTATG 57.670 33.333 0.00 0.00 0.00 1.90
7148 7383 7.227910 AGCTTAGTTTCGTTCAAATGGTCTTTA 59.772 33.333 0.00 0.00 0.00 1.85
7173 7417 4.739716 CGAAAAACACCCTGACAAATTGAG 59.260 41.667 0.00 0.00 0.00 3.02
7370 9242 4.145052 CTGGCCTAACTTCTCACCTTTTT 58.855 43.478 3.32 0.00 0.00 1.94
7401 9273 6.562825 CGACACCAATGTATTTCGATGATCTG 60.563 42.308 0.00 0.00 39.95 2.90
7407 9279 3.531538 AGCGACACCAATGTATTTCGAT 58.468 40.909 0.00 0.00 39.95 3.59
7409 9281 3.863424 AGTAGCGACACCAATGTATTTCG 59.137 43.478 0.00 0.00 39.95 3.46
7482 9371 3.443045 CTCCAACACATGCCGCCC 61.443 66.667 0.00 0.00 0.00 6.13
7483 9372 1.315257 ATTCTCCAACACATGCCGCC 61.315 55.000 0.00 0.00 0.00 6.13
7503 9392 7.797038 AACTTTTCTTACACGGTCACTTAAT 57.203 32.000 0.00 0.00 0.00 1.40
7590 9479 2.184579 GAGACCGGCCCTTTCGAG 59.815 66.667 0.00 0.00 0.00 4.04
7598 9487 0.462047 CCTTACATGTGAGACCGGCC 60.462 60.000 18.62 0.00 0.00 6.13
7617 9506 0.746923 GGTGGTTATCCGAACAGGCC 60.747 60.000 0.00 0.00 40.77 5.19
7618 9507 0.252197 AGGTGGTTATCCGAACAGGC 59.748 55.000 0.00 0.00 40.77 4.85
7619 9508 2.012051 GCAGGTGGTTATCCGAACAGG 61.012 57.143 0.00 0.00 42.97 4.00
7620 9509 1.066143 AGCAGGTGGTTATCCGAACAG 60.066 52.381 0.00 0.00 36.30 3.16
7621 9510 0.981183 AGCAGGTGGTTATCCGAACA 59.019 50.000 0.00 0.00 36.30 3.18
7622 9511 1.653151 GAGCAGGTGGTTATCCGAAC 58.347 55.000 0.00 0.00 36.30 3.95
7623 9512 0.539986 GGAGCAGGTGGTTATCCGAA 59.460 55.000 0.00 0.00 36.30 4.30
7624 9513 1.335132 GGGAGCAGGTGGTTATCCGA 61.335 60.000 0.00 0.00 36.30 4.55
7625 9514 1.146263 GGGAGCAGGTGGTTATCCG 59.854 63.158 0.00 0.00 36.30 4.18
7626 9515 0.181350 CAGGGAGCAGGTGGTTATCC 59.819 60.000 0.00 0.00 0.00 2.59
7627 9516 1.204146 TCAGGGAGCAGGTGGTTATC 58.796 55.000 0.00 0.00 0.00 1.75
7628 9517 1.668826 TTCAGGGAGCAGGTGGTTAT 58.331 50.000 0.00 0.00 0.00 1.89
7629 9518 1.440618 TTTCAGGGAGCAGGTGGTTA 58.559 50.000 0.00 0.00 0.00 2.85
7630 9519 0.779997 ATTTCAGGGAGCAGGTGGTT 59.220 50.000 0.00 0.00 0.00 3.67
7631 9520 0.779997 AATTTCAGGGAGCAGGTGGT 59.220 50.000 0.00 0.00 0.00 4.16
7632 9521 1.821136 GAAATTTCAGGGAGCAGGTGG 59.179 52.381 13.40 0.00 0.00 4.61
7633 9522 2.517959 TGAAATTTCAGGGAGCAGGTG 58.482 47.619 16.91 0.00 32.50 4.00
7634 9523 2.978156 TGAAATTTCAGGGAGCAGGT 57.022 45.000 16.91 0.00 32.50 4.00
7644 9533 7.403231 AGGTACTCCCTAGATTCTGAAATTTCA 59.597 37.037 19.45 19.45 43.87 2.69
7645 9534 7.797062 AGGTACTCCCTAGATTCTGAAATTTC 58.203 38.462 11.41 11.41 43.87 2.17
7646 9535 7.757242 AGGTACTCCCTAGATTCTGAAATTT 57.243 36.000 0.00 0.00 43.87 1.82
7647 9536 7.844779 TGTAGGTACTCCCTAGATTCTGAAATT 59.155 37.037 0.00 0.00 46.75 1.82
7648 9537 7.363031 TGTAGGTACTCCCTAGATTCTGAAAT 58.637 38.462 0.00 0.00 46.75 2.17
7649 9538 6.738635 TGTAGGTACTCCCTAGATTCTGAAA 58.261 40.000 0.00 0.00 46.75 2.69
7650 9539 6.337185 TGTAGGTACTCCCTAGATTCTGAA 57.663 41.667 0.00 0.00 46.75 3.02
7651 9540 5.988865 TGTAGGTACTCCCTAGATTCTGA 57.011 43.478 0.00 0.00 46.75 3.27
7652 9541 5.047660 GCATGTAGGTACTCCCTAGATTCTG 60.048 48.000 0.00 0.00 45.24 3.02
7653 9542 5.081032 GCATGTAGGTACTCCCTAGATTCT 58.919 45.833 0.00 0.00 45.24 2.40
7654 9543 4.082679 CGCATGTAGGTACTCCCTAGATTC 60.083 50.000 0.00 0.00 45.24 2.52
7655 9544 3.827302 CGCATGTAGGTACTCCCTAGATT 59.173 47.826 0.00 0.00 45.24 2.40
7657 9546 2.860009 CGCATGTAGGTACTCCCTAGA 58.140 52.381 0.00 0.00 46.75 2.43
7658 9547 1.269998 GCGCATGTAGGTACTCCCTAG 59.730 57.143 0.30 0.00 46.75 3.02
7659 9548 1.133575 AGCGCATGTAGGTACTCCCTA 60.134 52.381 11.47 0.00 43.87 3.53
7661 9550 0.032267 GAGCGCATGTAGGTACTCCC 59.968 60.000 11.47 0.00 41.75 4.30
7662 9551 0.032267 GGAGCGCATGTAGGTACTCC 59.968 60.000 11.47 0.00 41.75 3.85
7663 9552 0.744874 TGGAGCGCATGTAGGTACTC 59.255 55.000 11.47 0.00 41.75 2.59
7664 9553 0.460311 GTGGAGCGCATGTAGGTACT 59.540 55.000 11.47 0.00 46.37 2.73
7665 9554 0.870307 CGTGGAGCGCATGTAGGTAC 60.870 60.000 11.47 0.00 0.00 3.34
7666 9555 1.033202 TCGTGGAGCGCATGTAGGTA 61.033 55.000 11.47 0.00 41.07 3.08
7667 9556 1.676678 ATCGTGGAGCGCATGTAGGT 61.677 55.000 11.47 0.00 41.07 3.08
7668 9557 0.530650 AATCGTGGAGCGCATGTAGG 60.531 55.000 11.47 0.00 41.07 3.18
7669 9558 1.290203 AAATCGTGGAGCGCATGTAG 58.710 50.000 11.47 0.00 41.07 2.74
7670 9559 1.732941 AAAATCGTGGAGCGCATGTA 58.267 45.000 11.47 0.00 41.07 2.29
7671 9560 0.881118 AAAAATCGTGGAGCGCATGT 59.119 45.000 11.47 0.00 41.07 3.21
7672 9561 2.823196 TAAAAATCGTGGAGCGCATG 57.177 45.000 11.47 0.00 41.07 4.06
7673 9562 2.747446 AGTTAAAAATCGTGGAGCGCAT 59.253 40.909 11.47 0.00 41.07 4.73
7674 9563 2.147958 AGTTAAAAATCGTGGAGCGCA 58.852 42.857 11.47 0.00 41.07 6.09
7675 9564 2.894307 AGTTAAAAATCGTGGAGCGC 57.106 45.000 0.00 0.00 41.07 5.92
7676 9565 4.398549 TCAAGTTAAAAATCGTGGAGCG 57.601 40.909 0.00 0.00 43.01 5.03
7677 9566 5.758924 AGTTCAAGTTAAAAATCGTGGAGC 58.241 37.500 0.00 0.00 0.00 4.70
7678 9567 6.371389 GGAGTTCAAGTTAAAAATCGTGGAG 58.629 40.000 0.00 0.00 0.00 3.86
7679 9568 5.049954 CGGAGTTCAAGTTAAAAATCGTGGA 60.050 40.000 0.00 0.00 0.00 4.02
7680 9569 5.144359 CGGAGTTCAAGTTAAAAATCGTGG 58.856 41.667 0.00 0.00 0.00 4.94
7681 9570 4.611366 GCGGAGTTCAAGTTAAAAATCGTG 59.389 41.667 0.00 0.00 0.00 4.35
7682 9571 4.319984 GGCGGAGTTCAAGTTAAAAATCGT 60.320 41.667 0.00 0.00 0.00 3.73
7683 9572 4.156182 GGCGGAGTTCAAGTTAAAAATCG 58.844 43.478 0.00 0.00 0.00 3.34
7684 9573 4.482386 GGGCGGAGTTCAAGTTAAAAATC 58.518 43.478 0.00 0.00 0.00 2.17
7685 9574 3.057806 CGGGCGGAGTTCAAGTTAAAAAT 60.058 43.478 0.00 0.00 0.00 1.82
7686 9575 2.291190 CGGGCGGAGTTCAAGTTAAAAA 59.709 45.455 0.00 0.00 0.00 1.94
7687 9576 1.874872 CGGGCGGAGTTCAAGTTAAAA 59.125 47.619 0.00 0.00 0.00 1.52
7688 9577 1.515081 CGGGCGGAGTTCAAGTTAAA 58.485 50.000 0.00 0.00 0.00 1.52
7689 9578 0.952010 GCGGGCGGAGTTCAAGTTAA 60.952 55.000 0.00 0.00 0.00 2.01
7690 9579 1.375013 GCGGGCGGAGTTCAAGTTA 60.375 57.895 0.00 0.00 0.00 2.24
7691 9580 2.668550 GCGGGCGGAGTTCAAGTT 60.669 61.111 0.00 0.00 0.00 2.66
7692 9581 3.591254 GAGCGGGCGGAGTTCAAGT 62.591 63.158 0.00 0.00 0.00 3.16
7693 9582 2.815647 GAGCGGGCGGAGTTCAAG 60.816 66.667 0.00 0.00 0.00 3.02
7694 9583 4.388499 GGAGCGGGCGGAGTTCAA 62.388 66.667 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.