Multiple sequence alignment - TraesCS2D01G319600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G319600 chr2D 100.000 6669 0 0 1 6669 410413945 410407277 0.000000e+00 12316.0
1 TraesCS2D01G319600 chr2D 88.415 751 59 15 2990 3714 380417279 380416531 0.000000e+00 880.0
2 TraesCS2D01G319600 chr2D 90.123 324 28 3 9 330 309166285 309165964 1.030000e-112 418.0
3 TraesCS2D01G319600 chr2D 87.975 316 27 5 333 640 309156122 309155810 4.920000e-96 363.0
4 TraesCS2D01G319600 chr2D 89.209 139 13 1 4401 4539 193393251 193393115 8.890000e-39 172.0
5 TraesCS2D01G319600 chr2D 88.652 141 15 1 4401 4541 498106120 498106259 3.200000e-38 171.0
6 TraesCS2D01G319600 chr2D 88.750 80 8 1 6519 6597 467965394 467965473 5.500000e-16 97.1
7 TraesCS2D01G319600 chr2A 94.924 2502 77 25 3900 6363 578388215 578385726 0.000000e+00 3871.0
8 TraesCS2D01G319600 chr2A 96.206 1845 62 4 1875 3719 578390315 578388479 0.000000e+00 3013.0
9 TraesCS2D01G319600 chr2A 92.726 1086 44 16 632 1694 578394335 578393262 0.000000e+00 1535.0
10 TraesCS2D01G319600 chr2A 88.889 756 55 16 2990 3718 515952393 515951640 0.000000e+00 904.0
11 TraesCS2D01G319600 chr2A 96.129 155 5 1 3744 3898 578388495 578388342 1.110000e-62 252.0
12 TraesCS2D01G319600 chr2A 94.410 161 8 1 1670 1830 578390486 578390327 5.170000e-61 246.0
13 TraesCS2D01G319600 chr2A 86.517 89 11 1 6515 6602 722077292 722077204 5.500000e-16 97.1
14 TraesCS2D01G319600 chr2B 93.926 1811 73 8 851 2660 484934609 484932835 0.000000e+00 2700.0
15 TraesCS2D01G319600 chr2B 94.646 1681 59 12 2690 4363 484932836 484931180 0.000000e+00 2577.0
16 TraesCS2D01G319600 chr2B 88.818 1261 96 29 5287 6520 484930234 484928992 0.000000e+00 1506.0
17 TraesCS2D01G319600 chr2B 93.943 875 21 9 4405 5252 484931174 484930305 0.000000e+00 1293.0
18 TraesCS2D01G319600 chr2B 78.756 193 28 7 632 813 722398926 722399116 4.230000e-22 117.0
19 TraesCS2D01G319600 chr2B 90.805 87 6 2 6518 6602 594837496 594837582 1.520000e-21 115.0
20 TraesCS2D01G319600 chr5D 88.372 731 67 6 2990 3702 152753366 152754096 0.000000e+00 863.0
21 TraesCS2D01G319600 chr5D 90.879 307 26 2 331 635 404767237 404767543 1.730000e-110 411.0
22 TraesCS2D01G319600 chr5D 88.855 332 34 1 2 330 507868804 507868473 8.050000e-109 405.0
23 TraesCS2D01G319600 chr5D 87.202 336 38 3 1 331 24920642 24920977 1.760000e-100 377.0
24 TraesCS2D01G319600 chr5D 87.500 328 38 1 3 330 404764965 404765289 6.310000e-100 375.0
25 TraesCS2D01G319600 chr5D 86.760 287 33 4 333 617 556518813 556518530 1.400000e-81 315.0
26 TraesCS2D01G319600 chr5D 85.616 146 16 5 4398 4540 324404771 324404914 1.500000e-31 148.0
27 TraesCS2D01G319600 chr5D 77.376 221 36 11 632 841 524495127 524495344 1.170000e-22 119.0
28 TraesCS2D01G319600 chr5D 100.000 34 0 0 6557 6590 565094154 565094187 5.580000e-06 63.9
29 TraesCS2D01G319600 chr7D 87.834 748 65 11 2990 3714 332696664 332695920 0.000000e+00 854.0
30 TraesCS2D01G319600 chr7D 86.178 709 67 11 2990 3678 466053769 466053072 0.000000e+00 737.0
31 TraesCS2D01G319600 chr7D 87.901 405 35 8 216 617 585671698 585671305 1.310000e-126 464.0
32 TraesCS2D01G319600 chr7D 89.091 330 35 1 1 330 45706989 45707317 6.230000e-110 409.0
33 TraesCS2D01G319600 chr7D 89.206 315 28 1 22 330 46727461 46727147 8.110000e-104 388.0
34 TraesCS2D01G319600 chr7D 77.551 196 32 6 636 820 581493420 581493614 2.540000e-19 108.0
35 TraesCS2D01G319600 chr7D 83.077 65 10 1 6540 6603 79631909 79631845 2.600000e-04 58.4
36 TraesCS2D01G319600 chr1D 85.940 761 75 17 2990 3719 194673771 194674530 0.000000e+00 784.0
37 TraesCS2D01G319600 chr1D 90.000 330 32 1 1 330 418099965 418099637 6.180000e-115 425.0
38 TraesCS2D01G319600 chr1D 88.450 329 36 2 1 329 408537588 408537914 4.850000e-106 396.0
39 TraesCS2D01G319600 chr1D 91.489 282 23 1 333 613 402292821 402293102 2.920000e-103 387.0
40 TraesCS2D01G319600 chr1D 90.909 286 23 2 333 617 403201631 403201348 1.360000e-101 381.0
41 TraesCS2D01G319600 chr1D 84.810 316 40 3 22 330 452531166 452530852 1.810000e-80 311.0
42 TraesCS2D01G319600 chr1D 83.706 313 40 8 333 636 384773743 384773433 1.090000e-72 285.0
43 TraesCS2D01G319600 chr1D 88.321 137 12 3 4404 4540 97911892 97911760 1.920000e-35 161.0
44 TraesCS2D01G319600 chr1D 89.888 89 8 1 6516 6603 111540664 111540752 5.470000e-21 113.0
45 TraesCS2D01G319600 chr1D 76.526 213 35 10 632 832 235679758 235679549 1.180000e-17 102.0
46 TraesCS2D01G319600 chr1D 81.111 90 7 3 6510 6598 115089973 115089893 5.580000e-06 63.9
47 TraesCS2D01G319600 chr4D 88.035 677 58 9 2990 3645 303078535 303077861 0.000000e+00 780.0
48 TraesCS2D01G319600 chr4D 86.532 594 54 14 2274 2857 417361338 417360761 1.220000e-176 630.0
49 TraesCS2D01G319600 chr4D 92.715 302 20 2 333 633 442565567 442565267 1.030000e-117 435.0
50 TraesCS2D01G319600 chr4D 92.977 299 19 2 336 633 442641306 442641009 1.030000e-117 435.0
51 TraesCS2D01G319600 chr4D 86.141 368 31 13 333 692 432420322 432420677 4.880000e-101 379.0
52 TraesCS2D01G319600 chr4D 89.796 294 27 2 3418 3711 409444650 409444360 2.270000e-99 374.0
53 TraesCS2D01G319600 chr4D 91.935 248 20 0 1977 2224 417361584 417361337 1.380000e-91 348.0
54 TraesCS2D01G319600 chr4D 86.478 318 34 5 17 330 324470368 324470680 2.300000e-89 340.0
55 TraesCS2D01G319600 chr4D 87.456 287 31 5 333 617 44194556 44194273 6.450000e-85 326.0
56 TraesCS2D01G319600 chr4D 83.686 331 50 3 1 330 461767318 461766991 6.500000e-80 309.0
57 TraesCS2D01G319600 chr4D 87.023 262 26 5 1635 1894 417361844 417361589 8.460000e-74 289.0
58 TraesCS2D01G319600 chr4D 81.791 335 32 14 1 330 30280036 30280346 3.090000e-63 254.0
59 TraesCS2D01G319600 chr4D 91.129 124 11 0 21 144 405474460 405474583 1.150000e-37 169.0
60 TraesCS2D01G319600 chr4D 93.333 105 4 1 229 330 461222708 461222812 1.160000e-32 152.0
61 TraesCS2D01G319600 chr4D 84.211 133 13 8 361 489 30284131 30284259 9.080000e-24 122.0
62 TraesCS2D01G319600 chr4D 75.166 302 50 14 333 617 352572631 352572924 1.170000e-22 119.0
63 TraesCS2D01G319600 chr4D 76.442 208 31 13 631 823 72419291 72419495 5.500000e-16 97.1
64 TraesCS2D01G319600 chr4D 75.481 208 34 10 629 822 382740302 382740098 1.190000e-12 86.1
65 TraesCS2D01G319600 chr4D 100.000 28 0 0 6564 6591 321816699 321816726 1.200000e-02 52.8
66 TraesCS2D01G319600 chr4B 83.820 822 87 22 2992 3776 324919438 324920250 0.000000e+00 739.0
67 TraesCS2D01G319600 chr4B 90.030 331 30 1 3 330 67116839 67116509 6.180000e-115 425.0
68 TraesCS2D01G319600 chr4B 84.776 335 41 7 1 330 132316218 132315889 1.790000e-85 327.0
69 TraesCS2D01G319600 chr4B 78.857 175 26 7 632 796 672942778 672942951 2.540000e-19 108.0
70 TraesCS2D01G319600 chr4B 89.412 85 8 1 6519 6602 109084875 109084959 9.150000e-19 106.0
71 TraesCS2D01G319600 chr4B 86.905 84 11 0 6519 6602 207422837 207422920 1.980000e-15 95.3
72 TraesCS2D01G319600 chr4A 84.094 679 90 10 3049 3717 484539290 484538620 2.030000e-179 640.0
73 TraesCS2D01G319600 chr4A 87.500 312 29 5 333 636 677838493 677838802 1.060000e-92 351.0
74 TraesCS2D01G319600 chr4A 87.676 284 32 3 333 615 677867402 677867683 1.790000e-85 327.0
75 TraesCS2D01G319600 chr4A 86.014 143 16 4 4401 4543 34259748 34259886 4.170000e-32 150.0
76 TraesCS2D01G319600 chr4A 100.000 29 0 0 610 638 111053498 111053526 3.000000e-03 54.7
77 TraesCS2D01G319600 chr7B 90.845 426 36 2 3270 3695 387156081 387155659 9.710000e-158 568.0
78 TraesCS2D01G319600 chr7B 90.333 300 23 4 333 631 248554197 248553903 8.110000e-104 388.0
79 TraesCS2D01G319600 chr7B 91.197 284 23 2 333 615 599800323 599800605 1.050000e-102 385.0
80 TraesCS2D01G319600 chr7B 77.340 203 30 11 631 819 99633387 99633187 9.150000e-19 106.0
81 TraesCS2D01G319600 chr7B 78.212 179 27 8 628 796 222312188 222312012 3.290000e-18 104.0
82 TraesCS2D01G319600 chr7B 89.873 79 8 0 632 710 539221904 539221982 1.180000e-17 102.0
83 TraesCS2D01G319600 chr7B 75.595 168 36 5 631 796 687677849 687677685 1.990000e-10 78.7
84 TraesCS2D01G319600 chr7B 87.931 58 2 3 767 820 647749323 647749267 5.580000e-06 63.9
85 TraesCS2D01G319600 chr7A 88.939 443 38 6 3270 3711 442268915 442268483 2.740000e-148 536.0
86 TraesCS2D01G319600 chr3D 89.303 402 33 4 3309 3705 46481312 46481708 4.650000e-136 496.0
87 TraesCS2D01G319600 chr3D 90.964 332 25 2 1 330 47197096 47196768 6.140000e-120 442.0
88 TraesCS2D01G319600 chr3D 87.576 330 34 3 1 330 593914072 593914394 6.310000e-100 375.0
89 TraesCS2D01G319600 chr3D 85.714 140 15 4 4401 4539 355882366 355882501 6.970000e-30 143.0
90 TraesCS2D01G319600 chr3D 87.209 86 10 1 6519 6603 434025880 434025795 5.500000e-16 97.1
91 TraesCS2D01G319600 chr3D 75.225 222 38 10 632 840 581095851 581095634 9.210000e-14 89.8
92 TraesCS2D01G319600 chr3D 77.143 175 25 8 628 791 548803614 548803444 3.310000e-13 87.9
93 TraesCS2D01G319600 chr3A 90.244 328 29 1 3 330 468736146 468735822 6.180000e-115 425.0
94 TraesCS2D01G319600 chr3A 88.506 87 9 1 6517 6602 78732141 78732055 3.290000e-18 104.0
95 TraesCS2D01G319600 chr3A 89.333 75 6 1 6518 6590 67157824 67157750 7.120000e-15 93.5
96 TraesCS2D01G319600 chr6D 88.182 330 39 0 1 330 156441544 156441215 1.740000e-105 394.0
97 TraesCS2D01G319600 chr6D 85.852 311 37 4 21 330 430363397 430363093 2.320000e-84 324.0
98 TraesCS2D01G319600 chr6D 87.063 286 35 2 333 617 35002112 35001828 8.340000e-84 322.0
99 TraesCS2D01G319600 chr6D 85.761 309 39 3 23 330 429943889 429943585 8.340000e-84 322.0
100 TraesCS2D01G319600 chr6D 90.164 244 18 5 333 574 156439264 156439025 5.020000e-81 313.0
101 TraesCS2D01G319600 chr6D 84.227 317 39 7 18 330 437961020 437961329 1.410000e-76 298.0
102 TraesCS2D01G319600 chr6D 79.389 262 37 12 361 615 17388381 17388130 1.150000e-37 169.0
103 TraesCS2D01G319600 chr6D 77.377 305 41 14 333 617 437962176 437962472 8.950000e-34 156.0
104 TraesCS2D01G319600 chr6D 88.496 113 8 3 219 330 429891156 429891048 1.510000e-26 132.0
105 TraesCS2D01G319600 chr6D 79.024 205 34 7 373 573 448632343 448632144 1.510000e-26 132.0
106 TraesCS2D01G319600 chr6D 78.947 171 25 5 631 791 6141008 6140839 9.150000e-19 106.0
107 TraesCS2D01G319600 chr6D 88.889 81 8 1 6518 6597 196357994 196357914 1.530000e-16 99.0
108 TraesCS2D01G319600 chr6D 97.368 38 0 1 331 367 17388426 17388389 5.580000e-06 63.9
109 TraesCS2D01G319600 chr6D 97.222 36 1 0 361 396 57822008 57822043 2.010000e-05 62.1
110 TraesCS2D01G319600 chr6A 87.898 314 32 4 21 330 560850660 560850349 1.370000e-96 364.0
111 TraesCS2D01G319600 chr6A 89.474 285 27 3 333 615 469160202 469160485 2.290000e-94 357.0
112 TraesCS2D01G319600 chr6A 75.743 202 34 7 632 820 29792648 29792449 3.310000e-13 87.9
113 TraesCS2D01G319600 chr6A 83.951 81 12 1 629 709 154048736 154048657 7.170000e-10 76.8
114 TraesCS2D01G319600 chr6A 88.636 44 4 1 6563 6605 203599982 203599939 1.200000e-02 52.8
115 TraesCS2D01G319600 chr5B 88.312 308 28 5 336 637 608314468 608314163 4.920000e-96 363.0
116 TraesCS2D01G319600 chr5B 87.742 310 27 4 336 637 608192795 608192489 1.060000e-92 351.0
117 TraesCS2D01G319600 chr5B 90.141 142 10 3 4401 4539 271941864 271942004 1.480000e-41 182.0
118 TraesCS2D01G319600 chr1B 87.153 288 31 5 333 617 562435272 562434988 8.340000e-84 322.0
119 TraesCS2D01G319600 chr1B 85.915 142 13 4 4401 4540 155431500 155431636 1.940000e-30 145.0
120 TraesCS2D01G319600 chr1B 77.477 222 34 10 632 842 527837617 527837401 1.170000e-22 119.0
121 TraesCS2D01G319600 chr1B 87.209 86 10 1 6519 6603 640474624 640474709 5.500000e-16 97.1
122 TraesCS2D01G319600 chr1A 85.223 291 38 5 333 621 588383088 588382801 1.820000e-75 294.0
123 TraesCS2D01G319600 chr1A 84.337 83 12 1 6516 6597 15915162 15915244 5.540000e-11 80.5
124 TraesCS2D01G319600 chr3B 90.909 88 7 1 6517 6603 112281271 112281184 4.230000e-22 117.0
125 TraesCS2D01G319600 chr6B 90.278 72 7 0 631 702 636587404 636587333 1.980000e-15 95.3
126 TraesCS2D01G319600 chrUn 73.443 305 55 15 333 617 262691552 262691254 2.560000e-14 91.6
127 TraesCS2D01G319600 chrUn 73.443 305 55 15 333 617 268714400 268714698 2.560000e-14 91.6
128 TraesCS2D01G319600 chrUn 88.732 71 8 0 632 702 8098582 8098652 3.310000e-13 87.9
129 TraesCS2D01G319600 chrUn 82.759 87 7 2 6512 6597 464218346 464218425 3.340000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G319600 chr2D 410407277 410413945 6668 True 12316.000000 12316 100.000000 1 6669 1 chr2D.!!$R5 6668
1 TraesCS2D01G319600 chr2D 380416531 380417279 748 True 880.000000 880 88.415000 2990 3714 1 chr2D.!!$R4 724
2 TraesCS2D01G319600 chr2A 578385726 578394335 8609 True 1783.400000 3871 94.879000 632 6363 5 chr2A.!!$R3 5731
3 TraesCS2D01G319600 chr2A 515951640 515952393 753 True 904.000000 904 88.889000 2990 3718 1 chr2A.!!$R1 728
4 TraesCS2D01G319600 chr2B 484928992 484934609 5617 True 2019.000000 2700 92.833250 851 6520 4 chr2B.!!$R1 5669
5 TraesCS2D01G319600 chr5D 152753366 152754096 730 False 863.000000 863 88.372000 2990 3702 1 chr5D.!!$F2 712
6 TraesCS2D01G319600 chr5D 404764965 404767543 2578 False 393.000000 411 89.189500 3 635 2 chr5D.!!$F6 632
7 TraesCS2D01G319600 chr7D 332695920 332696664 744 True 854.000000 854 87.834000 2990 3714 1 chr7D.!!$R3 724
8 TraesCS2D01G319600 chr7D 466053072 466053769 697 True 737.000000 737 86.178000 2990 3678 1 chr7D.!!$R4 688
9 TraesCS2D01G319600 chr1D 194673771 194674530 759 False 784.000000 784 85.940000 2990 3719 1 chr1D.!!$F2 729
10 TraesCS2D01G319600 chr4D 303077861 303078535 674 True 780.000000 780 88.035000 2990 3645 1 chr4D.!!$R2 655
11 TraesCS2D01G319600 chr4D 417360761 417361844 1083 True 422.333333 630 88.496667 1635 2857 3 chr4D.!!$R8 1222
12 TraesCS2D01G319600 chr4B 324919438 324920250 812 False 739.000000 739 83.820000 2992 3776 1 chr4B.!!$F3 784
13 TraesCS2D01G319600 chr4A 484538620 484539290 670 True 640.000000 640 84.094000 3049 3717 1 chr4A.!!$R1 668
14 TraesCS2D01G319600 chr6D 156439025 156441544 2519 True 353.500000 394 89.173000 1 574 2 chr6D.!!$R9 573
15 TraesCS2D01G319600 chr6D 437961020 437962472 1452 False 227.000000 298 80.802000 18 617 2 chr6D.!!$F2 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 2776 0.452987 CAATGATGGTGGCGTTCCTG 59.547 55.000 0.00 0.00 0.00 3.86 F
890 2973 0.804989 CCTTTGCTACAGAAAGCGGG 59.195 55.000 0.00 0.00 45.85 6.13 F
1448 3532 1.521457 CACGCGGATGCAGGTACAT 60.521 57.895 12.47 0.00 42.97 2.29 F
1961 4302 1.961394 ACTTGCCTGAGTACTCAACGA 59.039 47.619 25.14 18.08 39.39 3.85 F
3423 6699 0.729690 GCACCGATTGAAGAGAAGCC 59.270 55.000 0.00 0.00 0.00 4.35 F
4087 9524 1.597027 CACAAGTGTGGACCGGGAC 60.597 63.158 6.32 0.00 42.10 4.46 F
5341 10851 0.179020 CACCCTTGTCACTTCTGCCA 60.179 55.000 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 4450 1.123077 TCAGAACAGGTCAGCACACT 58.877 50.000 0.00 0.00 0.00 3.55 R
2152 4494 3.192422 CCGATGTTTTATGTTGGCAAGGA 59.808 43.478 0.00 0.00 0.00 3.36 R
3016 6268 0.038526 AGTACTGAAACCGCACCTCG 60.039 55.000 0.00 0.00 38.08 4.63 R
3807 9119 0.968901 TACCTGGCAGGACCACGTAG 60.969 60.000 38.99 10.29 46.36 3.51 R
4393 9831 1.376037 GAACGGAGGGAGCAGTTGG 60.376 63.158 0.00 0.00 0.00 3.77 R
5523 11043 2.027377 CCCTGCCATTTAAAACATGCCA 60.027 45.455 0.00 0.00 0.00 4.92 R
6590 12136 0.322322 TTTTGTGATACGCCCTCGGT 59.678 50.000 0.00 0.00 40.69 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 228 3.964221 GACGGACGCGCTGACATCA 62.964 63.158 5.73 0.00 0.00 3.07
330 337 3.147132 TGCTCCTTCAAGCACCGA 58.853 55.556 0.00 0.00 47.00 4.69
388 2447 8.006298 ACTTTTATGTCATGAACTTGTTTGGA 57.994 30.769 0.00 0.00 0.00 3.53
400 2459 8.655651 TGAACTTGTTTGGATGATTTTAAACC 57.344 30.769 0.00 0.00 33.33 3.27
446 2507 9.986833 TGTTTGAAATATCACATATTGTCTTCG 57.013 29.630 0.00 0.00 35.71 3.79
496 2557 3.777925 CGCGCGCTGCAGTTTAGT 61.778 61.111 30.48 0.00 46.97 2.24
539 2600 1.597195 CGTGCTATATTTTGCAGCGGA 59.403 47.619 0.00 0.00 40.06 5.54
652 2713 1.774639 TAGCACAACGAGTTTCCGAC 58.225 50.000 0.00 0.00 0.00 4.79
656 2717 1.931172 CACAACGAGTTTCCGACTGTT 59.069 47.619 0.00 0.00 39.19 3.16
665 2726 5.108103 CGAGTTTCCGACTGTTTACTACAAC 60.108 44.000 0.00 0.00 39.19 3.32
675 2736 5.163591 ACTGTTTACTACAACAAGGTTTGCC 60.164 40.000 0.00 0.00 36.22 4.52
682 2743 1.115326 AACAAGGTTTGCCTGGCTCC 61.115 55.000 21.03 18.13 46.33 4.70
683 2744 2.282462 AAGGTTTGCCTGGCTCCG 60.282 61.111 21.03 0.00 46.33 4.63
685 2746 4.660938 GGTTTGCCTGGCTCCGGT 62.661 66.667 21.03 0.00 0.00 5.28
697 2758 2.038813 TCCGGTGATGGAGGAGCA 59.961 61.111 0.00 0.00 33.05 4.26
702 2763 1.202734 CGGTGATGGAGGAGCAATGAT 60.203 52.381 0.00 0.00 0.00 2.45
709 2770 1.442526 GAGGAGCAATGATGGTGGCG 61.443 60.000 0.00 0.00 37.41 5.69
713 2774 1.139520 GCAATGATGGTGGCGTTCC 59.860 57.895 0.00 0.00 0.00 3.62
715 2776 0.452987 CAATGATGGTGGCGTTCCTG 59.547 55.000 0.00 0.00 0.00 3.86
716 2777 1.315257 AATGATGGTGGCGTTCCTGC 61.315 55.000 0.00 0.00 0.00 4.85
717 2778 2.359850 GATGGTGGCGTTCCTGCA 60.360 61.111 0.00 0.00 36.28 4.41
718 2779 2.672996 ATGGTGGCGTTCCTGCAC 60.673 61.111 0.00 0.00 36.28 4.57
719 2780 3.196207 ATGGTGGCGTTCCTGCACT 62.196 57.895 0.00 0.00 36.28 4.40
720 2781 3.357079 GGTGGCGTTCCTGCACTG 61.357 66.667 0.00 0.00 36.28 3.66
741 2812 2.413765 GCTTGTAGTCTTCGCTACGTGA 60.414 50.000 0.00 0.00 43.03 4.35
743 2814 4.413087 CTTGTAGTCTTCGCTACGTGATT 58.587 43.478 0.00 0.00 43.03 2.57
761 2832 5.616866 CGTGATTCATGAACCTGGTTGTAAC 60.617 44.000 18.42 2.72 0.00 2.50
763 2834 6.016276 GTGATTCATGAACCTGGTTGTAACTT 60.016 38.462 18.42 0.00 0.00 2.66
764 2835 6.549364 TGATTCATGAACCTGGTTGTAACTTT 59.451 34.615 18.42 0.00 0.00 2.66
765 2836 5.766150 TCATGAACCTGGTTGTAACTTTG 57.234 39.130 18.42 5.24 0.00 2.77
766 2837 5.197451 TCATGAACCTGGTTGTAACTTTGT 58.803 37.500 18.42 0.00 0.00 2.83
767 2838 5.654650 TCATGAACCTGGTTGTAACTTTGTT 59.345 36.000 18.42 0.00 0.00 2.83
771 2842 7.314393 TGAACCTGGTTGTAACTTTGTTTTAC 58.686 34.615 18.42 0.00 0.00 2.01
890 2973 0.804989 CCTTTGCTACAGAAAGCGGG 59.195 55.000 0.00 0.00 45.85 6.13
901 2984 3.199880 AGAAAGCGGGTTCTGGATATG 57.800 47.619 0.00 0.00 36.48 1.78
1431 3515 2.421314 CTCGGTGACACCTGCACA 59.579 61.111 22.14 0.59 37.99 4.57
1446 3530 2.125673 ACACGCGGATGCAGGTAC 60.126 61.111 12.47 0.00 42.97 3.34
1448 3532 1.521457 CACGCGGATGCAGGTACAT 60.521 57.895 12.47 0.00 42.97 2.29
1471 3555 9.265901 ACATAGATCAATCCTTTTCGTCTATTG 57.734 33.333 0.00 0.00 0.00 1.90
1472 3556 6.610741 AGATCAATCCTTTTCGTCTATTGC 57.389 37.500 0.00 0.00 0.00 3.56
1473 3557 5.529060 AGATCAATCCTTTTCGTCTATTGCC 59.471 40.000 0.00 0.00 0.00 4.52
1474 3558 4.843728 TCAATCCTTTTCGTCTATTGCCT 58.156 39.130 0.00 0.00 0.00 4.75
1475 3559 5.984725 TCAATCCTTTTCGTCTATTGCCTA 58.015 37.500 0.00 0.00 0.00 3.93
1476 3560 6.591935 TCAATCCTTTTCGTCTATTGCCTAT 58.408 36.000 0.00 0.00 0.00 2.57
1568 3652 7.396540 AACCTTGTATTTTAGGAGAAGCATG 57.603 36.000 0.00 0.00 35.45 4.06
1644 3728 4.783450 GCATAGTTTTGTATGAGCAGCGAC 60.783 45.833 0.00 0.00 32.88 5.19
1727 3811 5.415701 AGATCATGTGGATGTTTTAACGCTT 59.584 36.000 0.00 0.00 36.00 4.68
1809 3893 9.757227 GTGAAGCAATTCTATAGAGAACTGTAT 57.243 33.333 9.98 0.13 44.50 2.29
1820 3904 5.470047 AGAGAACTGTATTCAGAAACGGT 57.530 39.130 6.32 4.85 43.76 4.83
1873 4176 7.712205 AGTTGGAGTTCGTAGCTTTTAAACTTA 59.288 33.333 0.00 0.00 30.68 2.24
1874 4177 8.501580 GTTGGAGTTCGTAGCTTTTAAACTTAT 58.498 33.333 0.00 0.00 30.68 1.73
1927 4268 6.042143 GGCCAACTTCACATGTTATATTTGG 58.958 40.000 14.54 14.54 35.16 3.28
1948 4289 4.395625 GGTTTAACCAACTAGACTTGCCT 58.604 43.478 9.56 0.00 38.42 4.75
1955 4296 3.511934 CCAACTAGACTTGCCTGAGTACT 59.488 47.826 0.00 0.00 0.00 2.73
1960 4301 2.029828 AGACTTGCCTGAGTACTCAACG 60.030 50.000 25.14 18.52 39.39 4.10
1961 4302 1.961394 ACTTGCCTGAGTACTCAACGA 59.039 47.619 25.14 18.08 39.39 3.85
1966 4307 3.069016 TGCCTGAGTACTCAACGAAAGAA 59.931 43.478 25.14 3.59 39.39 2.52
1970 4311 5.258456 TGAGTACTCAACGAAAGAACAGT 57.742 39.130 23.24 0.00 36.53 3.55
1973 4314 5.903810 AGTACTCAACGAAAGAACAGTTCT 58.096 37.500 10.27 10.27 43.15 3.01
2108 4450 2.500098 AGTTACAATAGGCGAGCAGGAA 59.500 45.455 0.00 0.00 0.00 3.36
2143 4485 2.820178 TCTGACAGCCTACAAGATCCA 58.180 47.619 0.00 0.00 0.00 3.41
2152 4494 5.026790 AGCCTACAAGATCCAACTAGTTCT 58.973 41.667 4.77 0.00 0.00 3.01
2249 4591 3.367321 TCGTCCAACCTGTATCATACCA 58.633 45.455 0.00 0.00 0.00 3.25
2261 4603 6.315393 CCTGTATCATACCACAAACCAGTTAC 59.685 42.308 0.00 0.00 0.00 2.50
2289 4631 3.382803 CTTGCAGCGAGGAGAGGGG 62.383 68.421 0.94 0.00 0.00 4.79
2364 4830 2.435203 AGTTGGGGAGGACCTTAGTT 57.565 50.000 0.00 0.00 40.03 2.24
2474 5233 5.181433 GTGTCCTGTCTTGGGTAGAAAATTC 59.819 44.000 0.00 0.00 33.81 2.17
2510 5269 4.442073 CACTTGGCTTGAGTTTTGATTTCG 59.558 41.667 0.00 0.00 0.00 3.46
2667 5918 8.400186 TCAATGTTTATGTGCTATGATTGTGAG 58.600 33.333 0.00 0.00 0.00 3.51
2789 6041 7.187824 TCTTCTATTGTCTGGATTAAGTGCT 57.812 36.000 0.00 0.00 0.00 4.40
2790 6042 8.306313 TCTTCTATTGTCTGGATTAAGTGCTA 57.694 34.615 0.00 0.00 0.00 3.49
2791 6043 8.198109 TCTTCTATTGTCTGGATTAAGTGCTAC 58.802 37.037 0.00 0.00 0.00 3.58
2988 6240 4.561213 GGCAACATATTTCGTTTTAGTGGC 59.439 41.667 0.00 0.00 0.00 5.01
3016 6268 9.127006 GCTTAGTAGAACTAAAACTGAGTACAC 57.873 37.037 0.00 0.00 39.89 2.90
3124 6392 1.029681 TCAATGCTGCAGATGGATGC 58.970 50.000 20.43 0.39 46.68 3.91
3423 6699 0.729690 GCACCGATTGAAGAGAAGCC 59.270 55.000 0.00 0.00 0.00 4.35
3437 6713 2.681848 GAGAAGCCTGTCCAACATCATG 59.318 50.000 0.00 0.00 0.00 3.07
3501 8799 4.342772 GGTTAAAGCGTGCTGATAATGTG 58.657 43.478 0.00 0.00 0.00 3.21
3533 8832 2.158726 GGGGTAGACCAAACTTGACACA 60.159 50.000 0.21 0.00 42.91 3.72
3554 8853 2.725637 GGAGGAGTCCGTAAAGAGAGT 58.274 52.381 2.76 0.00 31.37 3.24
3562 8861 3.921630 GTCCGTAAAGAGAGTTCTGAAGC 59.078 47.826 0.00 0.00 32.79 3.86
3807 9119 7.849804 TTTCTTTTAGCTGTGTCCTCATATC 57.150 36.000 0.00 0.00 0.00 1.63
3877 9189 5.277779 CGACAGTTTATTCCAGTTCTTTGCA 60.278 40.000 0.00 0.00 0.00 4.08
3898 9210 4.620982 CACATATCGCACTCTACCATTGA 58.379 43.478 0.00 0.00 0.00 2.57
3931 9368 6.872920 AGACTCACCTTTTAGAGATGACATC 58.127 40.000 7.39 7.39 35.83 3.06
3951 9388 9.342308 TGACATCTTGTTAGAATTTGAGAAGTT 57.658 29.630 0.00 0.00 33.20 2.66
4087 9524 1.597027 CACAAGTGTGGACCGGGAC 60.597 63.158 6.32 0.00 42.10 4.46
4296 9734 5.056480 ACTTTGGCTGTTAATTCCTTTTGC 58.944 37.500 0.00 0.00 0.00 3.68
4372 9810 4.994217 CGAATTTAATGGGTGCCACTTTTT 59.006 37.500 0.00 0.00 35.80 1.94
4382 9820 2.857748 GTGCCACTTTTTGTGTTGCTAC 59.142 45.455 0.00 0.00 44.81 3.58
4399 9837 5.468540 TGCTACACCTATATAGCCAACTG 57.531 43.478 4.04 0.00 42.67 3.16
4547 10007 7.272144 AGGAACAGAGGGAGTAATTATGTTT 57.728 36.000 1.16 0.00 30.10 2.83
4674 10134 4.464008 CATTCCATGTACTGTGCCCTTAT 58.536 43.478 0.00 0.00 0.00 1.73
4800 10260 0.947244 AGCTTCAAAGAAGTGTGCGG 59.053 50.000 8.39 0.00 0.00 5.69
5098 10558 4.702131 GCTCCATCCACATCTTGTACTTTT 59.298 41.667 0.00 0.00 0.00 2.27
5341 10851 0.179020 CACCCTTGTCACTTCTGCCA 60.179 55.000 0.00 0.00 0.00 4.92
5447 10959 4.156477 CTGTTATCCTTTTTGGTTCCCCA 58.844 43.478 0.00 0.00 39.65 4.96
5456 10968 5.163205 CCTTTTTGGTTCCCCAGAATCTTTT 60.163 40.000 0.00 0.00 43.15 2.27
5464 10976 5.179452 TCCCCAGAATCTTTTCTTAGTGG 57.821 43.478 0.00 0.00 40.28 4.00
5473 10985 5.825593 TCTTTTCTTAGTGGTCAGGACAT 57.174 39.130 1.41 0.00 0.00 3.06
5497 11016 5.939883 TGCAATACTCTTACTCTGCATTGTT 59.060 36.000 0.00 0.00 35.02 2.83
5522 11042 5.401972 CGTATTGCTTGAATTGCTGACAAAA 59.598 36.000 0.00 0.00 39.77 2.44
5523 11043 6.089820 CGTATTGCTTGAATTGCTGACAAAAT 59.910 34.615 0.00 0.00 39.77 1.82
5524 11044 5.660629 TTGCTTGAATTGCTGACAAAATG 57.339 34.783 0.00 0.00 39.77 2.32
5525 11045 4.059511 TGCTTGAATTGCTGACAAAATGG 58.940 39.130 0.00 0.00 39.77 3.16
5526 11046 3.120442 GCTTGAATTGCTGACAAAATGGC 60.120 43.478 0.00 0.00 39.77 4.40
5527 11047 3.747854 TGAATTGCTGACAAAATGGCA 57.252 38.095 0.00 0.00 39.77 4.92
5528 11048 4.274602 TGAATTGCTGACAAAATGGCAT 57.725 36.364 0.00 0.00 39.77 4.40
5563 11083 2.293399 GGGATTCCGTTATGTTGCATCC 59.707 50.000 0.00 0.00 0.00 3.51
5754 11274 8.931385 ACATGTTTGATTTTATACATCTTGGC 57.069 30.769 0.00 0.00 0.00 4.52
5793 11313 5.791367 TCAAGAGAATGAATTCTTCTGCG 57.209 39.130 18.77 10.50 46.47 5.18
5847 11368 6.000246 TGCATTTCTTCACACTATCCCATA 58.000 37.500 0.00 0.00 0.00 2.74
6195 11734 3.002348 GCCACTAACGAGCATTATTGACC 59.998 47.826 0.00 0.00 0.00 4.02
6261 11806 2.612672 CTCGTCAACCGTCTGAGCTATA 59.387 50.000 0.00 0.00 37.94 1.31
6305 11850 0.965363 AAGGTTGCTTACATGCCCCG 60.965 55.000 0.00 0.00 0.00 5.73
6315 11860 0.904394 ACATGCCCCGCCATTTTCTT 60.904 50.000 0.00 0.00 0.00 2.52
6380 11925 2.919666 TTAGCTTTGATTCGCAAGCC 57.080 45.000 13.92 1.41 37.87 4.35
6408 11953 2.322161 CACTTTGCCTCTTTGATTGCG 58.678 47.619 0.00 0.00 0.00 4.85
6426 11971 3.797039 TGCGGGACTAAAAGATCATGAG 58.203 45.455 0.09 0.00 0.00 2.90
6427 11972 3.197766 TGCGGGACTAAAAGATCATGAGT 59.802 43.478 0.09 0.00 0.00 3.41
6428 11973 4.404394 TGCGGGACTAAAAGATCATGAGTA 59.596 41.667 0.09 0.00 0.00 2.59
6433 11978 7.383572 CGGGACTAAAAGATCATGAGTATGAAG 59.616 40.741 0.09 0.00 45.82 3.02
6466 12011 8.535335 AGAATCTATATCATGGCATTTACGACT 58.465 33.333 0.00 0.00 0.00 4.18
6467 12012 9.155975 GAATCTATATCATGGCATTTACGACTT 57.844 33.333 0.00 0.00 0.00 3.01
6468 12013 7.889589 TCTATATCATGGCATTTACGACTTG 57.110 36.000 0.00 0.00 0.00 3.16
6477 12023 5.522460 TGGCATTTACGACTTGCTAACTATC 59.478 40.000 0.00 0.00 36.62 2.08
6478 12024 5.050295 GGCATTTACGACTTGCTAACTATCC 60.050 44.000 0.00 0.00 36.62 2.59
6485 12031 2.829720 ACTTGCTAACTATCCGACCACA 59.170 45.455 0.00 0.00 0.00 4.17
6500 12046 3.121126 CGACCACATGTTTGTTCTCGTAC 60.121 47.826 0.00 0.00 32.34 3.67
6501 12047 3.799366 ACCACATGTTTGTTCTCGTACA 58.201 40.909 0.00 0.00 32.34 2.90
6502 12048 4.193090 ACCACATGTTTGTTCTCGTACAA 58.807 39.130 0.00 0.00 36.30 2.41
6503 12049 4.636648 ACCACATGTTTGTTCTCGTACAAA 59.363 37.500 0.00 8.43 43.62 2.83
6514 12060 7.367159 TGTTCTCGTACAAAAAGTTCTTTGA 57.633 32.000 13.79 0.00 38.35 2.69
6520 12066 9.155053 CTCGTACAAAAAGTTCTTTGATTGTAC 57.845 33.333 24.62 24.62 42.40 2.90
6521 12067 8.885722 TCGTACAAAAAGTTCTTTGATTGTACT 58.114 29.630 27.52 10.68 42.92 2.73
6522 12068 9.155053 CGTACAAAAAGTTCTTTGATTGTACTC 57.845 33.333 27.52 16.29 42.92 2.59
6523 12069 9.447040 GTACAAAAAGTTCTTTGATTGTACTCC 57.553 33.333 25.77 13.39 42.46 3.85
6524 12070 7.489160 ACAAAAAGTTCTTTGATTGTACTCCC 58.511 34.615 11.30 0.00 38.35 4.30
6525 12071 7.342026 ACAAAAAGTTCTTTGATTGTACTCCCT 59.658 33.333 11.30 0.00 38.35 4.20
6526 12072 7.511959 AAAAGTTCTTTGATTGTACTCCCTC 57.488 36.000 0.00 0.00 0.00 4.30
6527 12073 5.825593 AGTTCTTTGATTGTACTCCCTCA 57.174 39.130 0.00 0.00 0.00 3.86
6528 12074 6.187727 AGTTCTTTGATTGTACTCCCTCAA 57.812 37.500 0.00 0.00 0.00 3.02
6529 12075 6.784031 AGTTCTTTGATTGTACTCCCTCAAT 58.216 36.000 0.00 0.00 37.04 2.57
6530 12076 7.918076 AGTTCTTTGATTGTACTCCCTCAATA 58.082 34.615 0.00 0.00 34.92 1.90
6531 12077 8.383175 AGTTCTTTGATTGTACTCCCTCAATAA 58.617 33.333 0.00 0.00 34.92 1.40
6532 12078 9.010029 GTTCTTTGATTGTACTCCCTCAATAAA 57.990 33.333 0.00 0.00 34.92 1.40
6533 12079 8.792830 TCTTTGATTGTACTCCCTCAATAAAG 57.207 34.615 0.00 0.00 34.92 1.85
6534 12080 8.602424 TCTTTGATTGTACTCCCTCAATAAAGA 58.398 33.333 0.00 0.00 35.16 2.52
6535 12081 9.231297 CTTTGATTGTACTCCCTCAATAAAGAA 57.769 33.333 0.00 0.00 34.92 2.52
6536 12082 9.581289 TTTGATTGTACTCCCTCAATAAAGAAA 57.419 29.630 0.00 0.00 34.92 2.52
6537 12083 9.753674 TTGATTGTACTCCCTCAATAAAGAAAT 57.246 29.630 0.00 0.00 34.92 2.17
6564 12110 7.820044 AAGAACGTTTAGATCTCTAAAGCAG 57.180 36.000 11.67 9.30 45.76 4.24
6565 12111 6.926313 AGAACGTTTAGATCTCTAAAGCAGT 58.074 36.000 11.67 9.79 45.76 4.40
6566 12112 6.809196 AGAACGTTTAGATCTCTAAAGCAGTG 59.191 38.462 11.67 4.38 45.76 3.66
6567 12113 6.268825 ACGTTTAGATCTCTAAAGCAGTGA 57.731 37.500 11.67 0.00 45.76 3.41
6568 12114 6.868622 ACGTTTAGATCTCTAAAGCAGTGAT 58.131 36.000 11.67 0.00 45.76 3.06
6569 12115 6.975772 ACGTTTAGATCTCTAAAGCAGTGATC 59.024 38.462 11.67 7.81 45.76 2.92
6576 12122 7.727331 ATCTCTAAAGCAGTGATCTAAATGC 57.273 36.000 0.00 0.00 33.18 3.56
6586 12132 9.790344 AGCAGTGATCTAAATGCTCTTATATTT 57.210 29.630 2.45 0.00 45.57 1.40
6596 12142 8.608844 AAATGCTCTTATATTTCTTACCGAGG 57.391 34.615 0.00 0.00 0.00 4.63
6597 12143 6.097915 TGCTCTTATATTTCTTACCGAGGG 57.902 41.667 0.00 0.00 0.00 4.30
6598 12144 4.930405 GCTCTTATATTTCTTACCGAGGGC 59.070 45.833 0.00 0.00 0.00 5.19
6599 12145 5.130292 TCTTATATTTCTTACCGAGGGCG 57.870 43.478 0.00 0.00 37.24 6.13
6600 12146 4.586001 TCTTATATTTCTTACCGAGGGCGT 59.414 41.667 0.00 0.00 35.23 5.68
6601 12147 5.769662 TCTTATATTTCTTACCGAGGGCGTA 59.230 40.000 0.00 0.00 35.23 4.42
6602 12148 6.435277 TCTTATATTTCTTACCGAGGGCGTAT 59.565 38.462 0.00 0.00 35.23 3.06
6603 12149 2.877043 TTTCTTACCGAGGGCGTATC 57.123 50.000 0.00 0.00 35.23 2.24
6604 12150 1.766494 TTCTTACCGAGGGCGTATCA 58.234 50.000 0.00 0.00 35.23 2.15
6605 12151 1.027357 TCTTACCGAGGGCGTATCAC 58.973 55.000 0.00 0.00 35.23 3.06
6606 12152 0.742505 CTTACCGAGGGCGTATCACA 59.257 55.000 0.00 0.00 35.23 3.58
6607 12153 1.135527 CTTACCGAGGGCGTATCACAA 59.864 52.381 0.00 0.00 35.23 3.33
6608 12154 1.184431 TACCGAGGGCGTATCACAAA 58.816 50.000 0.00 0.00 35.23 2.83
6609 12155 0.322322 ACCGAGGGCGTATCACAAAA 59.678 50.000 0.00 0.00 35.23 2.44
6610 12156 1.270947 ACCGAGGGCGTATCACAAAAA 60.271 47.619 0.00 0.00 35.23 1.94
6611 12157 1.396996 CCGAGGGCGTATCACAAAAAG 59.603 52.381 0.00 0.00 35.23 2.27
6612 12158 1.396996 CGAGGGCGTATCACAAAAAGG 59.603 52.381 0.00 0.00 0.00 3.11
6613 12159 1.132453 GAGGGCGTATCACAAAAAGGC 59.868 52.381 0.00 0.00 0.00 4.35
6614 12160 1.173913 GGGCGTATCACAAAAAGGCT 58.826 50.000 0.00 0.00 0.00 4.58
6615 12161 1.132453 GGGCGTATCACAAAAAGGCTC 59.868 52.381 0.00 0.00 0.00 4.70
6616 12162 1.810151 GGCGTATCACAAAAAGGCTCA 59.190 47.619 0.00 0.00 0.00 4.26
6617 12163 2.227865 GGCGTATCACAAAAAGGCTCAA 59.772 45.455 0.00 0.00 0.00 3.02
6618 12164 3.492313 GCGTATCACAAAAAGGCTCAAG 58.508 45.455 0.00 0.00 0.00 3.02
6619 12165 3.188460 GCGTATCACAAAAAGGCTCAAGA 59.812 43.478 0.00 0.00 0.00 3.02
6620 12166 4.320202 GCGTATCACAAAAAGGCTCAAGAA 60.320 41.667 0.00 0.00 0.00 2.52
6621 12167 5.619981 GCGTATCACAAAAAGGCTCAAGAAT 60.620 40.000 0.00 0.00 0.00 2.40
6622 12168 6.381801 CGTATCACAAAAAGGCTCAAGAATT 58.618 36.000 0.00 0.00 0.00 2.17
6623 12169 6.863126 CGTATCACAAAAAGGCTCAAGAATTT 59.137 34.615 0.00 0.00 0.00 1.82
6624 12170 8.020819 CGTATCACAAAAAGGCTCAAGAATTTA 58.979 33.333 0.00 0.00 0.00 1.40
6625 12171 9.860898 GTATCACAAAAAGGCTCAAGAATTTAT 57.139 29.630 0.00 0.00 0.00 1.40
6627 12173 9.783081 ATCACAAAAAGGCTCAAGAATTTATTT 57.217 25.926 0.00 0.00 0.00 1.40
6628 12174 9.044150 TCACAAAAAGGCTCAAGAATTTATTTG 57.956 29.630 0.00 0.00 0.00 2.32
6629 12175 8.829612 CACAAAAAGGCTCAAGAATTTATTTGT 58.170 29.630 0.00 0.00 37.65 2.83
6630 12176 9.394767 ACAAAAAGGCTCAAGAATTTATTTGTT 57.605 25.926 0.00 0.00 34.64 2.83
6633 12179 9.710900 AAAAGGCTCAAGAATTTATTTGTTAGG 57.289 29.630 0.00 0.00 0.00 2.69
6634 12180 8.650143 AAGGCTCAAGAATTTATTTGTTAGGA 57.350 30.769 0.00 0.00 0.00 2.94
6635 12181 8.650143 AGGCTCAAGAATTTATTTGTTAGGAA 57.350 30.769 0.00 0.00 0.00 3.36
6636 12182 8.523658 AGGCTCAAGAATTTATTTGTTAGGAAC 58.476 33.333 0.00 0.00 0.00 3.62
6637 12183 7.484959 GGCTCAAGAATTTATTTGTTAGGAACG 59.515 37.037 0.00 0.00 0.00 3.95
6638 12184 7.484959 GCTCAAGAATTTATTTGTTAGGAACGG 59.515 37.037 0.00 0.00 0.00 4.44
6639 12185 8.624367 TCAAGAATTTATTTGTTAGGAACGGA 57.376 30.769 0.00 0.00 0.00 4.69
6640 12186 8.726988 TCAAGAATTTATTTGTTAGGAACGGAG 58.273 33.333 0.00 0.00 0.00 4.63
6641 12187 8.726988 CAAGAATTTATTTGTTAGGAACGGAGA 58.273 33.333 0.00 0.00 0.00 3.71
6642 12188 8.494016 AGAATTTATTTGTTAGGAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
6643 12189 8.319146 AGAATTTATTTGTTAGGAACGGAGAGA 58.681 33.333 0.00 0.00 0.00 3.10
6644 12190 8.857694 AATTTATTTGTTAGGAACGGAGAGAA 57.142 30.769 0.00 0.00 0.00 2.87
6645 12191 8.857694 ATTTATTTGTTAGGAACGGAGAGAAA 57.142 30.769 0.00 0.00 0.00 2.52
6646 12192 8.857694 TTTATTTGTTAGGAACGGAGAGAAAT 57.142 30.769 0.00 0.00 0.00 2.17
6647 12193 6.743575 ATTTGTTAGGAACGGAGAGAAATG 57.256 37.500 0.00 0.00 0.00 2.32
6648 12194 5.477607 TTGTTAGGAACGGAGAGAAATGA 57.522 39.130 0.00 0.00 0.00 2.57
6649 12195 5.677319 TGTTAGGAACGGAGAGAAATGAT 57.323 39.130 0.00 0.00 0.00 2.45
6650 12196 6.785337 TGTTAGGAACGGAGAGAAATGATA 57.215 37.500 0.00 0.00 0.00 2.15
6651 12197 7.177832 TGTTAGGAACGGAGAGAAATGATAA 57.822 36.000 0.00 0.00 0.00 1.75
6652 12198 7.792032 TGTTAGGAACGGAGAGAAATGATAAT 58.208 34.615 0.00 0.00 0.00 1.28
6653 12199 8.265055 TGTTAGGAACGGAGAGAAATGATAATT 58.735 33.333 0.00 0.00 0.00 1.40
6654 12200 9.110502 GTTAGGAACGGAGAGAAATGATAATTT 57.889 33.333 0.00 0.00 0.00 1.82
6655 12201 9.681062 TTAGGAACGGAGAGAAATGATAATTTT 57.319 29.630 0.00 0.00 0.00 1.82
6657 12203 9.331282 AGGAACGGAGAGAAATGATAATTTTAG 57.669 33.333 0.00 0.00 0.00 1.85
6658 12204 9.110502 GGAACGGAGAGAAATGATAATTTTAGT 57.889 33.333 0.00 0.00 0.00 2.24
6661 12207 9.667107 ACGGAGAGAAATGATAATTTTAGTTGA 57.333 29.630 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.542742 GACCGCGCGCTGAACTAC 61.543 66.667 29.39 9.27 0.00 2.73
220 221 0.475632 AAGGGGTGAGGGTGATGTCA 60.476 55.000 0.00 0.00 0.00 3.58
227 228 0.546988 GTGTAGGAAGGGGTGAGGGT 60.547 60.000 0.00 0.00 0.00 4.34
330 337 2.517959 CCACAACATCATCCAACCAGT 58.482 47.619 0.00 0.00 0.00 4.00
388 2447 6.549433 AGACATGGCATGGTTTAAAATCAT 57.451 33.333 29.49 5.50 33.60 2.45
400 2459 4.562082 ACATCAAAACAAGACATGGCATG 58.438 39.130 25.31 25.31 0.00 4.06
446 2507 2.536803 CGCTTGCCATATGTTGCATTTC 59.463 45.455 7.37 0.92 37.33 2.17
496 2557 3.345808 GCCGCTCAAACAGACGCA 61.346 61.111 0.00 0.00 0.00 5.24
521 2582 1.597195 CGTCCGCTGCAAAATATAGCA 59.403 47.619 0.00 0.00 37.29 3.49
644 2705 5.971895 TGTTGTAGTAAACAGTCGGAAAC 57.028 39.130 0.00 0.00 39.87 2.78
647 2708 4.099881 ACCTTGTTGTAGTAAACAGTCGGA 59.900 41.667 8.26 0.00 40.93 4.55
652 2713 5.278604 GGCAAACCTTGTTGTAGTAAACAG 58.721 41.667 0.00 0.00 40.93 3.16
675 2736 2.503061 CTCCATCACCGGAGCCAG 59.497 66.667 9.46 0.00 45.95 4.85
682 2743 0.178767 TCATTGCTCCTCCATCACCG 59.821 55.000 0.00 0.00 0.00 4.94
683 2744 2.228059 CATCATTGCTCCTCCATCACC 58.772 52.381 0.00 0.00 0.00 4.02
685 2746 1.848388 ACCATCATTGCTCCTCCATCA 59.152 47.619 0.00 0.00 0.00 3.07
694 2755 1.315257 GGAACGCCACCATCATTGCT 61.315 55.000 0.00 0.00 0.00 3.91
697 2758 1.315257 GCAGGAACGCCACCATCATT 61.315 55.000 0.00 0.00 36.29 2.57
702 2763 3.872603 AGTGCAGGAACGCCACCA 61.873 61.111 0.00 0.00 35.44 4.17
709 2770 1.801178 GACTACAAGCAGTGCAGGAAC 59.199 52.381 19.20 0.00 0.00 3.62
713 2774 1.723542 CGAAGACTACAAGCAGTGCAG 59.276 52.381 19.20 11.98 0.00 4.41
715 2776 0.440371 GCGAAGACTACAAGCAGTGC 59.560 55.000 7.13 7.13 0.00 4.40
716 2777 2.071688 AGCGAAGACTACAAGCAGTG 57.928 50.000 0.00 0.00 0.00 3.66
717 2778 2.414293 CGTAGCGAAGACTACAAGCAGT 60.414 50.000 2.94 0.00 42.23 4.40
718 2779 2.177977 CGTAGCGAAGACTACAAGCAG 58.822 52.381 2.94 0.00 42.23 4.24
719 2780 1.538512 ACGTAGCGAAGACTACAAGCA 59.461 47.619 0.00 0.00 42.23 3.91
720 2781 1.912110 CACGTAGCGAAGACTACAAGC 59.088 52.381 0.00 0.00 42.23 4.01
741 2812 6.323739 ACAAAGTTACAACCAGGTTCATGAAT 59.676 34.615 12.12 0.00 0.00 2.57
743 2814 5.197451 ACAAAGTTACAACCAGGTTCATGA 58.803 37.500 0.12 0.00 0.00 3.07
832 2913 8.712285 ATGGAGAATTGTTCATTTTATGCTTG 57.288 30.769 0.00 0.00 0.00 4.01
890 2973 4.383052 CGATGAAGCGTACATATCCAGAAC 59.617 45.833 0.00 0.00 0.00 3.01
901 2984 2.350964 GGAGAGATCCGATGAAGCGTAC 60.351 54.545 0.00 0.00 0.00 3.67
1053 3137 2.123251 GAGATGGAGCGGGAGGGA 60.123 66.667 0.00 0.00 0.00 4.20
1431 3515 0.032130 CTATGTACCTGCATCCGCGT 59.968 55.000 4.92 0.00 42.97 6.01
1446 3530 8.226448 GCAATAGACGAAAAGGATTGATCTATG 58.774 37.037 0.00 0.00 30.33 2.23
1448 3532 6.706270 GGCAATAGACGAAAAGGATTGATCTA 59.294 38.462 0.00 0.00 30.62 1.98
1568 3652 8.734386 CATATGGATCATCTAAACTAAAAGCCC 58.266 37.037 0.00 0.00 0.00 5.19
1644 3728 3.758023 TCACACTATTTGCCCTCACAATG 59.242 43.478 0.00 0.00 0.00 2.82
1809 3893 2.613026 TGAGCTGAACCGTTTCTGAA 57.387 45.000 3.76 0.00 33.56 3.02
1820 3904 4.763279 TCTTCAGATTGCAATTGAGCTGAA 59.237 37.500 26.80 26.80 39.30 3.02
1822 3906 4.696899 TCTTCAGATTGCAATTGAGCTG 57.303 40.909 14.33 15.40 34.99 4.24
1927 4268 5.061179 TCAGGCAAGTCTAGTTGGTTAAAC 58.939 41.667 0.03 0.00 39.24 2.01
1948 4289 5.258456 ACTGTTCTTTCGTTGAGTACTCA 57.742 39.130 21.74 21.74 37.91 3.41
1955 4296 5.301045 TCTCCTAGAACTGTTCTTTCGTTGA 59.699 40.000 26.33 14.67 41.14 3.18
1960 4301 5.731957 ACCTCTCCTAGAACTGTTCTTTC 57.268 43.478 26.33 0.00 41.14 2.62
1961 4302 5.743422 GCAACCTCTCCTAGAACTGTTCTTT 60.743 44.000 26.33 10.57 41.14 2.52
1966 4307 2.896039 AGCAACCTCTCCTAGAACTGT 58.104 47.619 0.00 0.00 0.00 3.55
1970 4311 6.213600 ACAGAAAATAGCAACCTCTCCTAGAA 59.786 38.462 0.00 0.00 0.00 2.10
1973 4314 6.013725 TGAACAGAAAATAGCAACCTCTCCTA 60.014 38.462 0.00 0.00 0.00 2.94
2108 4450 1.123077 TCAGAACAGGTCAGCACACT 58.877 50.000 0.00 0.00 0.00 3.55
2143 4485 3.857157 TGTTGGCAAGGAGAACTAGTT 57.143 42.857 8.13 8.13 0.00 2.24
2152 4494 3.192422 CCGATGTTTTATGTTGGCAAGGA 59.808 43.478 0.00 0.00 0.00 3.36
2232 4574 4.398044 GGTTTGTGGTATGATACAGGTTGG 59.602 45.833 4.83 0.00 0.00 3.77
2235 4577 4.288626 ACTGGTTTGTGGTATGATACAGGT 59.711 41.667 4.83 0.00 0.00 4.00
2249 4591 4.589374 AGCTCTCTGTAGTAACTGGTTTGT 59.411 41.667 0.00 0.00 0.00 2.83
2300 4642 8.213518 ACGATGAACATCAAATAGTTGCTTAT 57.786 30.769 13.92 0.00 37.69 1.73
2510 5269 7.484035 TTCTGAAGAAGAAACTAGCTTGAAC 57.516 36.000 1.04 0.00 42.09 3.18
2667 5918 4.818546 CAGTCAACATCTGGGGATATTGTC 59.181 45.833 0.00 0.00 37.55 3.18
2676 5928 7.716998 AGCTAATTATTACAGTCAACATCTGGG 59.283 37.037 0.00 0.00 37.25 4.45
2677 5929 8.668510 AGCTAATTATTACAGTCAACATCTGG 57.331 34.615 0.00 0.00 37.25 3.86
2790 6042 8.978874 TCAACATGGATTGCATACTTAATAGT 57.021 30.769 0.00 0.00 38.44 2.12
2976 6228 1.001181 ACTAAGCCGCCACTAAAACGA 59.999 47.619 0.00 0.00 0.00 3.85
2988 6240 6.388278 ACTCAGTTTTAGTTCTACTAAGCCG 58.612 40.000 0.00 0.00 41.23 5.52
3016 6268 0.038526 AGTACTGAAACCGCACCTCG 60.039 55.000 0.00 0.00 38.08 4.63
3124 6392 5.411977 GGGCTCACATCTTCATCAATATCAG 59.588 44.000 0.00 0.00 0.00 2.90
3423 6699 5.188434 ACCATCTTACATGATGTTGGACAG 58.812 41.667 18.16 8.31 41.47 3.51
3437 6713 8.732746 AGTTGTATATGTCCAAACCATCTTAC 57.267 34.615 0.00 0.00 0.00 2.34
3501 8799 1.391577 GTCTACCCCGACCTCTCTTC 58.608 60.000 0.00 0.00 0.00 2.87
3533 8832 2.309458 ACTCTCTTTACGGACTCCTCCT 59.691 50.000 0.00 0.00 33.79 3.69
3554 8853 3.198068 GTGATATTCCAGCGCTTCAGAA 58.802 45.455 7.50 12.22 0.00 3.02
3562 8861 3.941483 AGTTCTTTGGTGATATTCCAGCG 59.059 43.478 1.83 0.00 37.36 5.18
3807 9119 0.968901 TACCTGGCAGGACCACGTAG 60.969 60.000 38.99 10.29 46.36 3.51
3877 9189 4.937201 TCAATGGTAGAGTGCGATATGT 57.063 40.909 0.00 0.00 0.00 2.29
4349 9787 3.866883 AAGTGGCACCCATTAAATTCG 57.133 42.857 15.27 0.00 35.28 3.34
4393 9831 1.376037 GAACGGAGGGAGCAGTTGG 60.376 63.158 0.00 0.00 0.00 3.77
4399 9837 5.011840 ACTTATATTTAGGAACGGAGGGAGC 59.988 44.000 0.00 0.00 0.00 4.70
4519 9979 8.832735 ACATAATTACTCCCTCTGTTCCTAAAA 58.167 33.333 0.00 0.00 0.00 1.52
4547 10007 3.706802 TTCGAACTTTGCAATGCTTGA 57.293 38.095 11.96 6.88 0.00 3.02
4610 10070 4.079253 AGCCGGTGTGTCAAAATAGAAAT 58.921 39.130 1.90 0.00 0.00 2.17
4800 10260 3.313690 CTTAAAATTTGCACGGTGGTCC 58.686 45.455 10.60 0.00 0.00 4.46
5098 10558 6.077197 CGTAATCGAAAATTGCAAGAACTCA 58.923 36.000 4.94 0.00 39.71 3.41
5276 10786 5.739752 TTCTTTGCGGATCATGATACTTG 57.260 39.130 16.00 2.51 0.00 3.16
5456 10968 2.256306 TGCATGTCCTGACCACTAAGA 58.744 47.619 0.00 0.00 0.00 2.10
5464 10976 5.665459 AGTAAGAGTATTGCATGTCCTGAC 58.335 41.667 0.00 0.00 0.00 3.51
5473 10985 5.491070 ACAATGCAGAGTAAGAGTATTGCA 58.509 37.500 0.00 0.00 44.49 4.08
5497 11016 3.750652 TGTCAGCAATTCAAGCAATACGA 59.249 39.130 0.00 0.00 0.00 3.43
5522 11042 3.370739 CCCTGCCATTTAAAACATGCCAT 60.371 43.478 0.00 0.00 0.00 4.40
5523 11043 2.027377 CCCTGCCATTTAAAACATGCCA 60.027 45.455 0.00 0.00 0.00 4.92
5524 11044 2.235898 TCCCTGCCATTTAAAACATGCC 59.764 45.455 0.00 0.00 0.00 4.40
5525 11045 3.608316 TCCCTGCCATTTAAAACATGC 57.392 42.857 0.00 0.00 0.00 4.06
5526 11046 5.118286 GGAATCCCTGCCATTTAAAACATG 58.882 41.667 0.00 0.00 0.00 3.21
5527 11047 4.141959 CGGAATCCCTGCCATTTAAAACAT 60.142 41.667 0.00 0.00 0.00 2.71
5528 11048 3.194542 CGGAATCCCTGCCATTTAAAACA 59.805 43.478 0.00 0.00 0.00 2.83
5701 11221 9.241919 TCTCCAATTAGAACATCTTATTTGCAA 57.758 29.630 0.00 0.00 0.00 4.08
5836 11357 5.049680 GCCACGTACAAAATATGGGATAGTG 60.050 44.000 0.00 0.00 0.00 2.74
5847 11368 8.349983 GGATGATTTTATAGCCACGTACAAAAT 58.650 33.333 0.00 0.00 0.00 1.82
6025 11562 5.277825 CGGTCTACATCTCTTTCTCATGAC 58.722 45.833 0.00 0.00 0.00 3.06
6195 11734 2.734723 CAGTCACCAGTGCGACGG 60.735 66.667 0.00 2.08 37.23 4.79
6261 11806 2.428890 TGGACGGTTGACAAAGCAAATT 59.571 40.909 0.00 0.00 33.21 1.82
6305 11850 1.067354 CCAGTGGCAGAAGAAAATGGC 60.067 52.381 0.00 0.00 42.01 4.40
6315 11860 2.203832 TGCTCCTCCAGTGGCAGA 60.204 61.111 3.51 2.32 0.00 4.26
6388 11933 2.322161 CGCAATCAAAGAGGCAAAGTG 58.678 47.619 0.00 0.00 0.00 3.16
6408 11953 8.424918 TCTTCATACTCATGATCTTTTAGTCCC 58.575 37.037 0.00 0.00 40.85 4.46
6445 11990 6.369890 AGCAAGTCGTAAATGCCATGATATAG 59.630 38.462 0.00 0.00 40.93 1.31
6461 12006 2.098770 GGTCGGATAGTTAGCAAGTCGT 59.901 50.000 0.00 0.00 0.00 4.34
6463 12008 3.119245 TGTGGTCGGATAGTTAGCAAGTC 60.119 47.826 0.00 0.00 0.00 3.01
6464 12009 2.829720 TGTGGTCGGATAGTTAGCAAGT 59.170 45.455 0.00 0.00 0.00 3.16
6466 12011 3.196901 ACATGTGGTCGGATAGTTAGCAA 59.803 43.478 0.00 0.00 0.00 3.91
6467 12012 2.764010 ACATGTGGTCGGATAGTTAGCA 59.236 45.455 0.00 0.00 0.00 3.49
6468 12013 3.454371 ACATGTGGTCGGATAGTTAGC 57.546 47.619 0.00 0.00 0.00 3.09
6477 12023 1.194547 CGAGAACAAACATGTGGTCGG 59.805 52.381 0.00 0.00 40.35 4.79
6478 12024 1.864711 ACGAGAACAAACATGTGGTCG 59.135 47.619 0.00 4.78 40.35 4.79
6485 12031 7.758495 AGAACTTTTTGTACGAGAACAAACAT 58.242 30.769 12.60 2.73 46.20 2.71
6500 12046 7.716612 AGGGAGTACAATCAAAGAACTTTTTG 58.283 34.615 0.00 8.99 38.97 2.44
6501 12047 7.559897 TGAGGGAGTACAATCAAAGAACTTTTT 59.440 33.333 0.00 0.00 0.00 1.94
6502 12048 7.060421 TGAGGGAGTACAATCAAAGAACTTTT 58.940 34.615 0.00 0.00 0.00 2.27
6503 12049 6.601332 TGAGGGAGTACAATCAAAGAACTTT 58.399 36.000 0.00 0.00 0.00 2.66
6538 12084 9.522804 CTGCTTTAGAGATCTAAACGTTCTTAT 57.477 33.333 10.31 0.00 41.85 1.73
6539 12085 8.521176 ACTGCTTTAGAGATCTAAACGTTCTTA 58.479 33.333 10.31 0.00 41.85 2.10
6540 12086 7.329717 CACTGCTTTAGAGATCTAAACGTTCTT 59.670 37.037 10.31 0.00 41.85 2.52
6541 12087 6.809196 CACTGCTTTAGAGATCTAAACGTTCT 59.191 38.462 10.31 0.00 41.85 3.01
6542 12088 6.807230 TCACTGCTTTAGAGATCTAAACGTTC 59.193 38.462 10.31 0.00 41.85 3.95
6543 12089 6.688578 TCACTGCTTTAGAGATCTAAACGTT 58.311 36.000 10.31 0.00 41.85 3.99
6544 12090 6.268825 TCACTGCTTTAGAGATCTAAACGT 57.731 37.500 10.31 6.28 41.85 3.99
6545 12091 7.388290 GATCACTGCTTTAGAGATCTAAACG 57.612 40.000 10.31 8.44 44.94 3.60
6552 12098 7.507829 AGCATTTAGATCACTGCTTTAGAGAT 58.492 34.615 0.00 0.00 42.03 2.75
6553 12099 6.882656 AGCATTTAGATCACTGCTTTAGAGA 58.117 36.000 0.00 0.00 42.03 3.10
6554 12100 6.985645 AGAGCATTTAGATCACTGCTTTAGAG 59.014 38.462 11.13 0.00 44.56 2.43
6555 12101 6.882656 AGAGCATTTAGATCACTGCTTTAGA 58.117 36.000 11.13 0.00 44.56 2.10
6556 12102 7.551035 AAGAGCATTTAGATCACTGCTTTAG 57.449 36.000 11.13 0.00 44.56 1.85
6558 12104 9.790344 ATATAAGAGCATTTAGATCACTGCTTT 57.210 29.630 11.13 4.98 44.56 3.51
6559 12105 9.790344 AATATAAGAGCATTTAGATCACTGCTT 57.210 29.630 11.13 0.00 44.56 3.91
6570 12116 9.706691 CCTCGGTAAGAAATATAAGAGCATTTA 57.293 33.333 0.00 0.00 0.00 1.40
6571 12117 7.661847 CCCTCGGTAAGAAATATAAGAGCATTT 59.338 37.037 0.00 0.00 0.00 2.32
6572 12118 7.162082 CCCTCGGTAAGAAATATAAGAGCATT 58.838 38.462 0.00 0.00 0.00 3.56
6573 12119 6.702329 CCCTCGGTAAGAAATATAAGAGCAT 58.298 40.000 0.00 0.00 0.00 3.79
6574 12120 5.510861 GCCCTCGGTAAGAAATATAAGAGCA 60.511 44.000 0.00 0.00 0.00 4.26
6575 12121 4.930405 GCCCTCGGTAAGAAATATAAGAGC 59.070 45.833 0.00 0.00 0.00 4.09
6576 12122 5.162075 CGCCCTCGGTAAGAAATATAAGAG 58.838 45.833 0.00 0.00 0.00 2.85
6577 12123 4.586001 ACGCCCTCGGTAAGAAATATAAGA 59.414 41.667 0.00 0.00 40.69 2.10
6578 12124 4.879598 ACGCCCTCGGTAAGAAATATAAG 58.120 43.478 0.00 0.00 40.69 1.73
6579 12125 4.942761 ACGCCCTCGGTAAGAAATATAA 57.057 40.909 0.00 0.00 40.69 0.98
6580 12126 5.711506 TGATACGCCCTCGGTAAGAAATATA 59.288 40.000 0.00 0.00 40.69 0.86
6581 12127 4.525487 TGATACGCCCTCGGTAAGAAATAT 59.475 41.667 0.00 0.00 40.69 1.28
6582 12128 3.890756 TGATACGCCCTCGGTAAGAAATA 59.109 43.478 0.00 0.00 40.69 1.40
6583 12129 2.696707 TGATACGCCCTCGGTAAGAAAT 59.303 45.455 0.00 0.00 40.69 2.17
6584 12130 2.101783 TGATACGCCCTCGGTAAGAAA 58.898 47.619 0.00 0.00 40.69 2.52
6585 12131 1.406539 GTGATACGCCCTCGGTAAGAA 59.593 52.381 0.00 0.00 40.69 2.52
6586 12132 1.027357 GTGATACGCCCTCGGTAAGA 58.973 55.000 0.00 0.00 40.69 2.10
6587 12133 0.742505 TGTGATACGCCCTCGGTAAG 59.257 55.000 0.00 0.00 40.69 2.34
6588 12134 1.184431 TTGTGATACGCCCTCGGTAA 58.816 50.000 0.00 0.00 40.69 2.85
6589 12135 1.184431 TTTGTGATACGCCCTCGGTA 58.816 50.000 0.00 0.00 40.69 4.02
6590 12136 0.322322 TTTTGTGATACGCCCTCGGT 59.678 50.000 0.00 0.00 40.69 4.69
6591 12137 1.396996 CTTTTTGTGATACGCCCTCGG 59.603 52.381 0.00 0.00 40.69 4.63
6592 12138 1.396996 CCTTTTTGTGATACGCCCTCG 59.603 52.381 0.00 0.00 42.43 4.63
6593 12139 1.132453 GCCTTTTTGTGATACGCCCTC 59.868 52.381 0.00 0.00 0.00 4.30
6594 12140 1.173913 GCCTTTTTGTGATACGCCCT 58.826 50.000 0.00 0.00 0.00 5.19
6595 12141 1.132453 GAGCCTTTTTGTGATACGCCC 59.868 52.381 0.00 0.00 0.00 6.13
6596 12142 1.810151 TGAGCCTTTTTGTGATACGCC 59.190 47.619 0.00 0.00 0.00 5.68
6597 12143 3.188460 TCTTGAGCCTTTTTGTGATACGC 59.812 43.478 0.00 0.00 0.00 4.42
6598 12144 5.356882 TTCTTGAGCCTTTTTGTGATACG 57.643 39.130 0.00 0.00 0.00 3.06
6599 12145 9.860898 ATAAATTCTTGAGCCTTTTTGTGATAC 57.139 29.630 0.00 0.00 0.00 2.24
6601 12147 9.783081 AAATAAATTCTTGAGCCTTTTTGTGAT 57.217 25.926 0.00 0.00 0.00 3.06
6602 12148 9.044150 CAAATAAATTCTTGAGCCTTTTTGTGA 57.956 29.630 0.00 0.00 0.00 3.58
6603 12149 8.829612 ACAAATAAATTCTTGAGCCTTTTTGTG 58.170 29.630 0.00 0.00 33.67 3.33
6604 12150 8.962884 ACAAATAAATTCTTGAGCCTTTTTGT 57.037 26.923 0.00 0.00 0.00 2.83
6607 12153 9.710900 CCTAACAAATAAATTCTTGAGCCTTTT 57.289 29.630 2.81 0.00 0.00 2.27
6608 12154 9.088987 TCCTAACAAATAAATTCTTGAGCCTTT 57.911 29.630 2.81 0.00 0.00 3.11
6609 12155 8.650143 TCCTAACAAATAAATTCTTGAGCCTT 57.350 30.769 2.81 0.00 0.00 4.35
6610 12156 8.523658 GTTCCTAACAAATAAATTCTTGAGCCT 58.476 33.333 2.81 0.00 0.00 4.58
6611 12157 7.484959 CGTTCCTAACAAATAAATTCTTGAGCC 59.515 37.037 2.81 0.00 0.00 4.70
6612 12158 7.484959 CCGTTCCTAACAAATAAATTCTTGAGC 59.515 37.037 2.81 0.00 0.00 4.26
6613 12159 8.726988 TCCGTTCCTAACAAATAAATTCTTGAG 58.273 33.333 2.81 0.00 0.00 3.02
6614 12160 8.624367 TCCGTTCCTAACAAATAAATTCTTGA 57.376 30.769 2.81 0.00 0.00 3.02
6615 12161 8.726988 TCTCCGTTCCTAACAAATAAATTCTTG 58.273 33.333 0.00 0.00 0.00 3.02
6616 12162 8.857694 TCTCCGTTCCTAACAAATAAATTCTT 57.142 30.769 0.00 0.00 0.00 2.52
6617 12163 8.319146 TCTCTCCGTTCCTAACAAATAAATTCT 58.681 33.333 0.00 0.00 0.00 2.40
6618 12164 8.488651 TCTCTCCGTTCCTAACAAATAAATTC 57.511 34.615 0.00 0.00 0.00 2.17
6619 12165 8.857694 TTCTCTCCGTTCCTAACAAATAAATT 57.142 30.769 0.00 0.00 0.00 1.82
6620 12166 8.857694 TTTCTCTCCGTTCCTAACAAATAAAT 57.142 30.769 0.00 0.00 0.00 1.40
6621 12167 8.726988 CATTTCTCTCCGTTCCTAACAAATAAA 58.273 33.333 0.00 0.00 0.00 1.40
6622 12168 8.098286 TCATTTCTCTCCGTTCCTAACAAATAA 58.902 33.333 0.00 0.00 0.00 1.40
6623 12169 7.617225 TCATTTCTCTCCGTTCCTAACAAATA 58.383 34.615 0.00 0.00 0.00 1.40
6624 12170 6.472887 TCATTTCTCTCCGTTCCTAACAAAT 58.527 36.000 0.00 0.00 0.00 2.32
6625 12171 5.860611 TCATTTCTCTCCGTTCCTAACAAA 58.139 37.500 0.00 0.00 0.00 2.83
6626 12172 5.477607 TCATTTCTCTCCGTTCCTAACAA 57.522 39.130 0.00 0.00 0.00 2.83
6627 12173 5.677319 ATCATTTCTCTCCGTTCCTAACA 57.323 39.130 0.00 0.00 0.00 2.41
6628 12174 8.664211 AATTATCATTTCTCTCCGTTCCTAAC 57.336 34.615 0.00 0.00 0.00 2.34
6629 12175 9.681062 AAAATTATCATTTCTCTCCGTTCCTAA 57.319 29.630 0.00 0.00 30.80 2.69
6631 12177 9.331282 CTAAAATTATCATTTCTCTCCGTTCCT 57.669 33.333 0.00 0.00 30.80 3.36
6632 12178 9.110502 ACTAAAATTATCATTTCTCTCCGTTCC 57.889 33.333 0.00 0.00 30.80 3.62
6635 12181 9.667107 TCAACTAAAATTATCATTTCTCTCCGT 57.333 29.630 0.00 0.00 30.80 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.